FF:10612-108F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004903 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007891;DRR008763;DRZ000188;DRZ001573;DRZ011538;DRZ012923 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100787,FF:0102380,FF:0101225 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!270.46!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.07!115.85!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.06!112.68!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.77!58.50!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.67!52.02!PPARG;;chr13:73633131..73633149,+!p1@KLF5!1.59!381.26!KLF5;;chr17:74137321..74137337,-!p1@FOXJ1!1.57!36.17!FOXJ1;;chr20:42984330..42984364,+!p2@HNF4A!1.55!34.44!HNF4A;;chr20:22564895..22564910,-!p1@FOXA2!1.48!29.39!FOXA2;;chr8:102504651..102504683,+!p1@GRHL2!1.46!28.10!GRHL2;;chr19:46367576..46367592,+!p1@FOXA3!1.39!23.63!FOXA3;;chr11:34645791..34645836,+!p3@EHF!1.38!23.20!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.38!23.20!ONECUT3;;chr6:29648890..29648944,-!p1@ZFP57!1.38!22.77!ZFP57;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.52!TFAP2A;;chr17:41622765..41622821,-!p2@ETV4!1.35!32.28!ETV4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.75!ZBED1;;chr11:61520075..61520136,+!p1@C11orf9!1.30!39.62!C11orf9;;chr3:169381420..169381535,-!p1@MECOM!1.30!22.05!MECOM;;chr17:70117153..70117174,+!p1@SOX9!1.28!182.27!SOX9;;chr12:54380404..54380433,+!p3@HOXC10!1.28!17.87!HOXC10;;chr7:156803329..156803362,-!p1@MNX1!1.25!16.71!MNX1;;chr3:168864315..168864339,-!p2@MECOM!1.24!26.94!MECOM;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.86!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.16!IRF6;;chr19:50432453..50432468,+!p1@ATF5!1.17!764.26!ATF5;;chr16:52581025..52581072,-!p1@TOX3!1.17!13.69!TOX3;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!68.59!CREB3L1;;chr3:12329397..12329433,+!p2@PPARG!1.16!30.40!PPARG;;chr1:27240455..27240474,-!p1@NR0B2!1.15!12.97!NR0B2;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.96!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!1.11!11.82!ETV4;;chr11:34642656..34642667,+!p2@EHF!1.09!11.38!EHF;;chr11:63684602..63684664,-!p1@RCOR2!1.04!20.17!RCOR2;;chr3:32023232..32023273,+!p1@ZNF860!1.04!14.41!ZNF860;;chr17:41622925..41622976,-!p3@ETV4!1.03!14.70!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!1.02!9.51!HOXC4;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.51!IRX2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.37!TFCP2L1;;chr7:73038839..73038862,-!p1@MLXIPL!1.01!9.22!MLXIPL;;chr12:54447599..54447630,+!p3@HOXC4!1.00!11.24!HOXC4;;chr1:197881592..197881617,+!p6@LHX9!1.00!8.93!LHX9;;chr9:96717629..96717644,-!p1@BARX1!0.99!8.79!BARX1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.40!PITX1;;chr17:46687959..46688007,-!p2@HOXB7!0.98!11.82!HOXB7;;chr7:14028488..14028516,-!p2@ETV1!0.97!9.22!ETV1;;chr10:28032421..28032494,-!p2@MKX!0.97!8.36!MKX;;chr5:150284532..150284549,-!p1@ZNF300!0.96!17.29!ZNF300;;chr12:54380036..54380091,+!p4@HOXC10!0.96!8.21!HOXC10;;chr12:54379136..54379150,+!p4@HOXC5!0.96!8.07!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.54!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.95!7.92!GATA4;;chr17:36105042..36105060,-!p1@HNF1B!0.95!7.92!HNF1B;;chr17:41623692..41623715,-!p1@ETV4!0.94!33.72!ETV4;;chr7:14028743..14028799,-!p3@ETV1!0.92!9.37!ETV1;;chr18:19749517..19749531,+!p3@GATA6!0.91!13.11!GATA6;;chr7:27219833..27219845,-!p7@HOXA10!0.91!7.06!HOXA10;;chr12:54378923..54378966,+!p1@HOXC10!0.91!7.06!HOXC10;;chr1:42801540..42801562,-!p4@FOXJ3!0.91!7.06!FOXJ3;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.82!MSX2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.92!MSX2;;chr11:2291814..2291825,-!p2@ASCL2!0.90!6.92!ASCL2;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.77!PAX9;;chr11:65554528..65554546,+!p1@OVOL1!0.88!6.63!OVOL1;;chr20:22565370..22565388,-!p2@FOXA2!0.88!6.63!FOXA2;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.34!SIM2;;chr6:41514305..41514359,+!p2@FOXP4!0.86!55.33!FOXP4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.20!IKZF3;;chr9:129376201..129376225,+!p1@LMX1B!0.86!6.20!LMX1B;;chr7:14029283..14029311,-!p1@ETV1!0.85!34.44!ETV1;;chr19:33865009..33865090,+!p3@CEBPG!0.85!8.21!CEBPG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.64!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.36!HOXB7;;chr3:168865194..168865245,-!p3@MECOM!0.82!7.35!MECOM;;chr11:32457103..32457123,-!p3@WT1!0.82!5.62!WT1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.82!5.62!EN2;;chr17:41622834..41622883,-!p6@ETV4!0.81!6.77!ETV4;;chr16:52580953..52580992,-!p2@TOX3!0.81!5.48!TOX3;;chr1:10856639..10856662,-!p2@CASZ1!0.81!5.48!CASZ1;;chr18:3449330..3449344,+!p10@TGIF1!0.80!7.20!TGIF1;;chr3:168865250..168865272,-!p5@MECOM!0.80!5.33!MECOM;;chr6:135502501..135502546,+!p1@MYB!0.79!6.34!MYB;;chr12:54332608..54332636,+!p1@HOXC13!0.79!5.19!HOXC13;;chr13:28543285..28543314,-!p2@CDX2!0.79!5.19!CDX2;;chr6:41514078..41514158,+!p1@FOXP4!0.78!49.28!FOXP4;;chr6:34524093..34524135,-!p1@SPDEF!0.77!4.90!SPDEF;;chr1:119530493..119530572,-!p1@TBX15!0.77!4.90!TBX15;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.90!HEYL;;chr11:32457075..32457095,-!p1@WT1!0.77!4.90!WT1;;chr10:114711019..114711041,+!p7@TCF7L2!0.76!7.49!TCF7L2;;chr3:18486354..18486377,-!p2@SATB1!0.76!6.05!SATB1;;chr2:177053386..177053402,+!p1@HOXD1!0.76!4.75!HOXD1;;chr7:27190547..27190591,-!p1@HOXA6!0.76!4.75!HOXA6;;chr17:36105074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| |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!270.46!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.07!115.85!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.06!112.68!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.77!58.50!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.67!52.02!PPARG;;chr13:73633131..73633149,+!p1@KLF5!1.59!381.26!KLF5;;chr17:74137321..74137337,-!p1@FOXJ1!1.57!36.17!FOXJ1;;chr20:42984330..42984364,+!p2@HNF4A!1.55!34.44!HNF4A;;chr20:22564895..22564910,-!p1@FOXA2!1.48!29.39!FOXA2;;chr8:102504651..102504683,+!p1@GRHL2!1.46!28.10!GRHL2;;chr19:46367576..46367592,+!p1@FOXA3!1.39!23.63!FOXA3;;chr11:34645791..34645836,+!p3@EHF!1.38!23.20!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.38!23.20!ONECUT3;;chr6:29648890..29648944,-!p1@ZFP57!1.38!22.77!ZFP57;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.52!TFAP2A;;chr17:41622765..41622821,-!p2@ETV4!1.35!32.28!ETV4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.75!ZBED1;;chr11:61520075..61520136,+!p1@C11orf9!1.30!39.62!C11orf9;;chr3:169381420..169381535,-!p1@MECOM!1.30!22.05!MECOM;;chr17:70117153..70117174,+!p1@SOX9!1.28!182.27!SOX9;;chr12:54380404..54380433,+!p3@HOXC10!1.28!17.87!HOXC10;;chr7:156803329..156803362,-!p1@MNX1!1.25!16.71!MNX1;;chr3:168864315..168864339,-!p2@MECOM!1.24!26.94!MECOM;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.86!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.16!IRF6;;chr19:50432453..50432468,+!p1@ATF5!1.17!764.26!ATF5;;chr16:52581025..52581072,-!p1@TOX3!1.17!13.69!TOX3;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!68.59!CREB3L1;;chr3:12329397..12329433,+!p2@PPARG!1.16!30.40!PPARG;;chr1:27240455..27240474,-!p1@NR0B2!1.15!12.97!NR0B2;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.96!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!1.11!11.82!ETV4;;chr11:34642656..34642667,+!p2@EHF!1.09!11.38!EHF;;chr11:63684602..63684664,-!p1@RCOR2!1.04!20.17!RCOR2;;chr3:32023232..32023273,+!p1@ZNF860!1.04!14.41!ZNF860;;chr17:41622925..41622976,-!p3@ETV4!1.03!14.70!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!1.02!9.51!HOXC4;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.51!IRX2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.37!TFCP2L1;;chr7:73038839..73038862,-!p1@MLXIPL!1.01!9.22!MLXIPL;;chr12:54447599..54447630,+!p3@HOXC4!1.00!11.24!HOXC4;;chr1:197881592..197881617,+!p6@LHX9!1.00!8.93!LHX9;;chr9:96717629..96717644,-!p1@BARX1!0.99!8.79!BARX1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.40!PITX1;;chr17:46687959..46688007,-!p2@HOXB7!0.98!11.82!HOXB7;;chr7:14028488..14028516,-!p2@ETV1!0.97!9.22!ETV1;;chr10:28032421..28032494,-!p2@MKX!0.97!8.36!MKX;;chr5:150284532..150284549,-!p1@ZNF300!0.96!17.29!ZNF300;;chr12:54380036..54380091,+!p4@HOXC10!0.96!8.21!HOXC10;;chr12:54379136..54379150,+!p4@HOXC5!0.96!8.07!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.54!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.95!7.92!GATA4;;chr17:36105042..36105060,-!p1@HNF1B!0.95!7.92!HNF1B;;chr17:41623692..41623715,-!p1@ETV4!0.94!33.72!ETV4;;chr7:14028743..14028799,-!p3@ETV1!0.92!9.37!ETV1;;chr18:19749517..19749531,+!p3@GATA6!0.91!13.11!GATA6;;chr7:27219833..27219845,-!p7@HOXA10!0.91!7.06!HOXA10;;chr12:54378923..54378966,+!p1@HOXC10!0.91!7.06!HOXC10;;chr1:42801540..42801562,-!p4@FOXJ3!0.91!7.06!FOXJ3;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.82!MSX2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.92!MSX2;;chr11:2291814..2291825,-!p2@ASCL2!0.90!6.92!ASCL2;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.77!PAX9;;chr11:65554528..65554546,+!p1@OVOL1!0.88!6.63!OVOL1;;chr20:22565370..22565388,-!p2@FOXA2!0.88!6.63!FOXA2;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.34!SIM2;;chr6:41514305..41514359,+!p2@FOXP4!0.86!55.33!FOXP4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.20!IKZF3;;chr9:129376201..129376225,+!p1@LMX1B!0.86!6.20!LMX1B;;chr7:14029283..14029311,-!p1@ETV1!0.85!34.44!ETV1;;chr19:33865009..33865090,+!p3@CEBPG!0.85!8.21!CEBPG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.64!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.36!HOXB7;;chr3:168865194..168865245,-!p3@MECOM!0.82!7.35!MECOM;;chr11:32457103..32457123,-!p3@WT1!0.82!5.62!WT1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.82!5.62!EN2;;chr17:41622834..41622883,-!p6@ETV4!0.81!6.77!ETV4;;chr16:52580953..52580992,-!p2@TOX3!0.81!5.48!TOX3;;chr1:10856639..10856662,-!p2@CASZ1!0.81!5.48!CASZ1;;chr18:3449330..3449344,+!p10@TGIF1!0.80!7.20!TGIF1;;chr3:168865250..168865272,-!p5@MECOM!0.80!5.33!MECOM;;chr6:135502501..135502546,+!p1@MYB!0.79!6.34!MYB;;chr12:54332608..54332636,+!p1@HOXC13!0.79!5.19!HOXC13;;chr13:28543285..28543314,-!p2@CDX2!0.79!5.19!CDX2;;chr6:41514078..41514158,+!p1@FOXP4!0.78!49.28!FOXP4;;chr6:34524093..34524135,-!p1@SPDEF!0.77!4.90!SPDEF;;chr1:119530493..119530572,-!p1@TBX15!0.77!4.90!TBX15;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.90!HEYL;;chr11:32457075..32457095,-!p1@WT1!0.77!4.90!WT1;;chr10:114711019..114711041,+!p7@TCF7L2!0.76!7.49!TCF7L2;;chr3:18486354..18486377,-!p2@SATB1!0.76!6.05!SATB1;;chr2:177053386..177053402,+!p1@HOXD1!0.76!4.75!HOXD1;;chr7:27190547..27190591,-!p1@HOXA6!0.76!4.75!HOXA6;;chr17:36105074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| ||
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line=FF:0100787,FF:0101120 | |fonse_cell_line=FF:0100787,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100787,FF:0101120 | |fonse_cell_line_closure=FF:0100787,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10612-108F9 | |id=FF:10612-108F9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101225 | ||
|is_obsolete= | |||
|library_id=CNhs11819 | |||
|library_id_phase_based=2:CNhs11819 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10612 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10612 | |||
|name=gastric adenocarcinoma cell line:MKN45 | |name=gastric adenocarcinoma cell line:MKN45 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11819,LSID829,release010,COMPLETED | |profile_hcage=CNhs11819,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.172670188852901,0.109976833388356,0.0556260867457727,0.199800599463649,0,0,0,0,0,0,0,0,0,0,0,0.0584603479879495,0,0.0443328555109792,0,0,0,0,0,0.53693025728302,0,0,0.25459413982765,0,0,0,0,0,0,0,0,0,0,0.0584603479879495,0,-0.0128986628440534,0.108388164194644,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.0584603479879495,0.100663504616802,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0359799146864538,-0.156208986001691,0,0,0,0,-0.0395750032497569,0.159906980383305,0,0,0,0.0584603479879495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0389125499329719,0,0,0,0,-0.108784723672912,0,0,0.109976833388356,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0584603479879495,-0.0395750032497569,0,0,0.0584603479879495,0,0,0,0,0.0584603479879495,0,0,0,-0.0115362931703606,0.078012637427781,0.188884971767815,0.159385433672016,0,0,-0.0802767244298626,0,0,0,0,0,0.0584603479879495,0,0.0584603479879495,0,-0.128119866952565,0,0.185230030525889,0,0,0,0,-0.0186252810838506,0.630880235193729,0,-0.056436770091908,0.0416325723109883,0,0,0,0,-0.152419378276722,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.52314390928433,0.00274785120676753,0,0,0,-0.461250716243507,0.970164388430701,0,0,0.0844499673978675,-0.181349618560659,0,0,-0.391044581551635,0,-0.141327980727404,0.0727899273585369,0,0.130800544493125,0,0,0,0,0,0.0584603479879495,0,0,0.109976833388356,0,0,-0.0574934668214365,0.0854710416205137,0,0.0584603479879495,0.156025274855562,0.0584603479879495,-0.0567155669946876,0,0,0.724569012100635,0.151014837075921,-0.0872224699045004,0.777190782780044,0,-0.302389727009913,-0.031313978791568,0.324204906610465,0.0359799146864538,-0.147401849371139,-0.189981719549847,0.0584603479879495,0.0193395763244217,-0.515700341403146,-0.0287462408562144,-0.0632901010686038,0.0292301739939748,-0.401229521395821,0.174954589995197,0,0.634888153551077,-0.0775089264793031,-0.0631847091927659,0,0.177592463105537,-0.0540976511424193,0.294363623600929,-0.0468089860833695,-0.192001038737707,0.271047522114282,-0.272517336973159,-0.0395325284566706,-0.0963106726433992,0,-0.241009434777102,-0.0062686480194567,0.0584603479879495,0.0584603479879495,0.095821681321591,0.0155839019270713,0.133205840595035,0,0.0537833573076084,0.0876810137781941,0.0292301739939748,-0.346375388309141,-0.167562391124099,0,0,-0.166317592571929,0,0,0,0,0.0584603479879495,0.243319446687494,-0.2689198553193,0.0700450146399433,0,0.0408697401384409,0.0556562641882327,-0.179464789294984,0,0.0466020661458411,-0.143710413622856,-0.100418286501886,0.119445845596539,0,0.207474619882759,-0.335536088694918,-0.00896542148344046,-0.312417972003381,1.3521176124312e-05,-0.294454870441377,0.0406513620233888,0.244795843346415,-0.289066424987849,0,-0.0881268324752877,0,-0.88354475051838,-0.199884555676815,0.0211319671994763,0.0653181244811995,0.0584603479879495,-0.0383137301357219,0,0.19809483546784,0,-0.216994940147047,0.0944544020778373,-0.0517386449741739,0.289609788937684,0,-0.00525576351472612,-0.678154104385618,0,0.00305459751065063,0,0.857084391409288,-0.150367083334639,0.805213652431322,-0.101673594476233,-0.0037033128237617,0,-0.270850003146522,0,0,0.443624422219536,-0.0378201719049819,0,-0.0453340227269109,-0.020168825097327,0.121916968902982,-0.00599424004657759,0.0584603479879495,0,0.447130548602016,0,0,0.486902822776711,0.0463719882505548,0.419322863843702,-0.253326341486756,-0.0305709917843579,0.451962132117504,0,0,0.155460452974111,0,-0.22241810102237,0,0,-0.0692008345071052,0,0,0.054988416694178,0,0,0,0,0,0,0,0,0,-0.156745422898836,-0.0842610425055821,0,0.235642582115204,0,0,0,0,0,0,0,0,-1.59233083881968,-0.0461972240862261,-0.0130405822880638,0.0292301739939748,0,0.0584603479879495,0,0.373310686562595,0.0324060200204801,0.109976833388356,-0.0734023585096822,0,0,0,0,-0.0861409897892114,0,0,0,0.0988279329297035,0.000729890934285507,0.0749467906553885,0,0.0584603479879495,0.0292301739939748,0.0841713786514051,0,0,0,0,0.105570903032716,0,0,-0.0859916222362211,0,-0.213377011400474,0.251406339392445,0,0.111424405588055,-0.237347016629514,0.0475071303464056,0,0,-0.202886783801938,0,0,-0.0203382655559754,0,0.235642582115204,0.0076282442833781,0,0,0,0,0.235642582115204,0,-0.214314512399756,0,0.0175024546262676,0.0177995843630837,0,0,0.0584603479879495,0,0,0,0,0,-0.349431687410548,0.210676519536978,-0.00559932252915864,0,0,0,0,0,0,0.152734547278581,-0.079888301547827,0,0,0,0,0,0,0,0,0.101180583747868,0,0,0.0584603479879495,0,0,0.100663504616802,0,0,0,0,0.399601198927298,0,0,0.0556260867457727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17958149016004,-0.227913766554866,0,0,0,0,0,0.109976833388356,0,0.161183765128264,0,0,0,0,-0.0554240257210277,0,0,0,0.307663253510326,0,0.172670188852901,0,0,0,0,0,0,0.135286143855433,0,0,0,0,0,0,0,0,0,0,0.078012637427781,0,0,0,0.150928081706144,-0.0147544294813777,-0.089551650113503,0,0,0,-0.232628352633041,0,0,0,0,0,0,0.0674875089011765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0292301739939748,-0.0399585417822035,0,0,0,0,0,0,0,0.53693025728302,0,0,0.0360252971231521,0,0,0,0,0.109976833388356,0,-0.170155549599108,-0.253990225829173,0.0142656879066914,0,0,0,-0.054385572482455,0,0,0,0.0584603479879495,-0.0667773874189013,0,0,0,0,0,0,0,0,0.109976833388356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662971190519824,0.0443328555109792,0,0,0,0,0,0,0,0,0,0,0,0,0.0292301739939748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0292301739939748,0,0,0,0,0,0,-0.00478118928144177,0,0,0.0584603479879495,0,0,0,0,0,0,0,0.0584603479879495,0,0,0,0,0,0,0,0,0,0,0.0584603479879495,0.117637397590768,0,0,0,-0.103109396268687,0,0,0,0,0,0,0,0,0.156025274855562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=149.48025 | |rna_weight_ug=149.48025 | ||
|sample_age=62 | |sample_age=62 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1001 | |sample_cell_catalog=RCB1001 | ||
|sample_cell_line=MKN45 | |sample_cell_line=MKN45 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.526994719494e-269!GO:0043226;organelle;1.16622634266853e-223!GO:0043231;intracellular membrane-bound organelle;1.54273453900058e-223!GO:0043227;membrane-bound organelle;2.17078185746701e-223!GO:0043229;intracellular organelle;2.90250940815899e-223!GO:0005737;cytoplasm;6.63123420798029e-186!GO:0044422;organelle part;1.92835841193189e-150!GO:0044446;intracellular organelle part;8.54011282800046e-149!GO:0044444;cytoplasmic part;8.56304735922829e-139!GO:0044237;cellular metabolic process;7.38413011390995e-106!GO:0044238;primary metabolic process;3.0314901291498e-103!GO:0032991;macromolecular complex;1.81486233393754e-97!GO:0043170;macromolecule metabolic process;1.7567771535354e-96!GO:0030529;ribonucleoprotein complex;2.61789821533288e-92!GO:0005634;nucleus;1.90302277052272e-91!GO:0043233;organelle lumen;8.60759255882143e-82!GO:0031974;membrane-enclosed lumen;8.60759255882143e-82!GO:0003723;RNA binding;4.17546826220461e-79!GO:0044428;nuclear part;3.45721638410416e-77!GO:0005739;mitochondrion;5.98626536203612e-76!GO:0005515;protein binding;1.64000662455245e-59!GO:0043283;biopolymer metabolic process;1.36154292336095e-58!GO:0005840;ribosome;2.81320445662227e-57!GO:0006396;RNA processing;7.74413411785853e-56!GO:0006412;translation;2.39064036561395e-55!GO:0010467;gene expression;2.56178801675118e-55!GO:0031090;organelle membrane;5.31419530585037e-55!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.64154958957207e-50!GO:0019538;protein metabolic process;7.25260116105433e-50!GO:0044429;mitochondrial part;7.40603761055669e-50!GO:0003735;structural constituent of ribosome;2.94366611070599e-49!GO:0031981;nuclear lumen;5.14001419814212e-48!GO:0043234;protein complex;1.91780543413967e-46!GO:0009058;biosynthetic process;3.39022831159143e-46!GO:0044267;cellular protein metabolic process;6.69378464353842e-46!GO:0044260;cellular macromolecule metabolic process;1.92089083314813e-45!GO:0044249;cellular biosynthetic process;5.70909654309087e-45!GO:0015031;protein transport;1.12326525444051e-44!GO:0009059;macromolecule biosynthetic process;1.19332771446207e-44!GO:0033036;macromolecule localization;1.04982805974521e-43!GO:0031967;organelle envelope;1.94600903962948e-42!GO:0031975;envelope;3.47351833828343e-42!GO:0033279;ribosomal subunit;1.69979158138047e-41!GO:0016043;cellular component organization and biogenesis;6.03920430439167e-41!GO:0016071;mRNA metabolic process;1.60176580212769e-40!GO:0045184;establishment of protein localization;2.38661401649401e-40!GO:0008104;protein localization;7.36747307707986e-40!GO:0005829;cytosol;3.36758254684941e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.32281514919136e-35!GO:0008380;RNA splicing;1.2352406928345e-34!GO:0006397;mRNA processing;1.48428057661285e-34!GO:0043228;non-membrane-bound organelle;6.00407101409628e-34!GO:0043232;intracellular non-membrane-bound organelle;6.00407101409628e-34!GO:0003676;nucleic acid binding;3.86682784497056e-33!GO:0046907;intracellular transport;7.17999526340425e-33!GO:0006996;organelle organization and biogenesis;7.39601372205082e-32!GO:0006259;DNA metabolic process;1.48117118990789e-30!GO:0005740;mitochondrial envelope;2.41451165486762e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.80428366383705e-30!GO:0006886;intracellular protein transport;2.58847886258136e-29!GO:0065003;macromolecular complex assembly;8.18822018012978e-29!GO:0019866;organelle inner membrane;8.68533545787354e-29!GO:0016070;RNA metabolic process;1.19822305528873e-28!GO:0000166;nucleotide binding;1.2796037549205e-28!GO:0031966;mitochondrial membrane;2.29566606562641e-28!GO:0005654;nucleoplasm;3.32162065884341e-27!GO:0005743;mitochondrial inner membrane;7.66931665403658e-27!GO:0022607;cellular component assembly;7.04058977132177e-25!GO:0031980;mitochondrial lumen;2.53513274037365e-24!GO:0005759;mitochondrial matrix;2.53513274037365e-24!GO:0005681;spliceosome;2.91962121740784e-24!GO:0044445;cytosolic part;4.67823390103106e-24!GO:0012505;endomembrane system;1.98609859381858e-23!GO:0005730;nucleolus;3.40568207135094e-23!GO:0044451;nucleoplasm part;1.06927021370635e-22!GO:0007049;cell cycle;2.98821829570884e-22!GO:0006457;protein folding;4.13821184940535e-22!GO:0015934;large ribosomal subunit;1.90037541446888e-21!GO:0015935;small ribosomal subunit;3.25388118382672e-21!GO:0044455;mitochondrial membrane part;1.08489367696588e-20!GO:0016874;ligase activity;1.14403090708281e-20!GO:0051649;establishment of cellular localization;1.18990467526964e-20!GO:0006119;oxidative phosphorylation;1.58018617828841e-20!GO:0051641;cellular localization;5.19161478092551e-20!GO:0017076;purine nucleotide binding;8.08929572537947e-20!GO:0032553;ribonucleotide binding;9.49630122130102e-20!GO:0032555;purine ribonucleotide binding;9.49630122130102e-20!GO:0044265;cellular macromolecule catabolic process;1.62255198695358e-19!GO:0005783;endoplasmic reticulum;2.78284662188331e-19!GO:0022618;protein-RNA complex assembly;1.24954117960275e-18!GO:0006974;response to DNA damage stimulus;4.2926263084597e-18!GO:0016462;pyrophosphatase activity;4.39828670506424e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.108949064184e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;8.30889626134846e-18!GO:0032559;adenyl ribonucleotide binding;9.90303403354427e-18!GO:0005524;ATP binding;1.04548702694386e-17!GO:0030554;adenyl nucleotide binding;1.36530395158703e-17!GO:0008135;translation factor activity, nucleic acid binding;2.07230589489047e-17!GO:0006512;ubiquitin cycle;2.08141647086444e-17!GO:0042254;ribosome biogenesis and assembly;4.22091699466555e-17!GO:0005794;Golgi apparatus;4.49729515971905e-17!GO:0017111;nucleoside-triphosphatase activity;5.57488427964301e-17!GO:0043285;biopolymer catabolic process;6.38475220560647e-17!GO:0044432;endoplasmic reticulum part;8.5286961112004e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.13589566920246e-17!GO:0005746;mitochondrial respiratory chain;1.0853476461589e-16!GO:0044248;cellular catabolic process;1.59024818894941e-16!GO:0008134;transcription factor binding;1.73664860516146e-16!GO:0019941;modification-dependent protein catabolic process;1.73664860516146e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.73664860516146e-16!GO:0009057;macromolecule catabolic process;3.32435906232453e-16!GO:0044257;cellular protein catabolic process;3.45401481746328e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.46590733629262e-16!GO:0043412;biopolymer modification;3.85622663934624e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.29023665267757e-16!GO:0048770;pigment granule;1.20683358898923e-15!GO:0042470;melanosome;1.20683358898923e-15!GO:0051082;unfolded protein binding;1.37007772899529e-15!GO:0005761;mitochondrial ribosome;1.54098753205316e-15!GO:0000313;organellar ribosome;1.54098753205316e-15!GO:0022402;cell cycle process;3.28078340477603e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.30186018019109e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.90065847745109e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.62864308083589e-15!GO:0003954;NADH dehydrogenase activity;4.62864308083589e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.62864308083589e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.35715235302197e-15!GO:0006605;protein targeting;6.55583010739328e-15!GO:0006281;DNA repair;9.3207774685767e-15!GO:0006399;tRNA metabolic process;3.90354882959912e-14!GO:0009719;response to endogenous stimulus;4.58286680015026e-14!GO:0051186;cofactor metabolic process;5.4626489056618e-14!GO:0051276;chromosome organization and biogenesis;7.94648688337631e-14!GO:0006464;protein modification process;8.77178680544951e-14!GO:0005694;chromosome;1.17562403203384e-13!GO:0031965;nuclear membrane;1.69972371027476e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.71534816958089e-13!GO:0000375;RNA splicing, via transesterification reactions;1.71534816958089e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.71534816958089e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.05069260260859e-13!GO:0042773;ATP synthesis coupled electron transport;2.05069260260859e-13!GO:0030163;protein catabolic process;2.3707470931149e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.55392069421394e-13!GO:0045271;respiratory chain complex I;4.55392069421394e-13!GO:0005747;mitochondrial respiratory chain complex I;4.55392069421394e-13!GO:0005635;nuclear envelope;7.47772678956105e-13!GO:0006366;transcription from RNA polymerase II promoter;9.43864878196933e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;9.94166999320582e-13!GO:0003743;translation initiation factor activity;1.06620743137142e-12!GO:0016887;ATPase activity;1.476059245555e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.5812122643658e-12!GO:0016072;rRNA metabolic process;2.07057670194659e-12!GO:0044453;nuclear membrane part;2.84522497286684e-12!GO:0000278;mitotic cell cycle;3.18257650688441e-12!GO:0016604;nuclear body;3.28549087559313e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.4065212410663e-12!GO:0005789;endoplasmic reticulum membrane;4.14642204656298e-12!GO:0006323;DNA packaging;4.17542231339556e-12!GO:0048193;Golgi vesicle transport;4.20309150225901e-12!GO:0042623;ATPase activity, coupled;5.25299050681232e-12!GO:0004386;helicase activity;5.49017995405353e-12!GO:0006260;DNA replication;5.78227805898568e-12!GO:0006413;translational initiation;7.90136330056855e-12!GO:0006364;rRNA processing;1.37868579765059e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.26732070659005e-11!GO:0006446;regulation of translational initiation;2.29617805038913e-11!GO:0006913;nucleocytoplasmic transport;2.35032847084021e-11!GO:0012501;programmed cell death;3.27187486294216e-11!GO:0051169;nuclear transport;3.73397522820925e-11!GO:0005643;nuclear pore;3.99848869845435e-11!GO:0006732;coenzyme metabolic process;4.43151346712381e-11!GO:0043687;post-translational protein modification;5.10352672424345e-11!GO:0044427;chromosomal part;5.27329123253563e-11!GO:0006915;apoptosis;6.09447361917736e-11!GO:0008026;ATP-dependent helicase activity;1.60211052582987e-10!GO:0009055;electron carrier activity;1.72271076865461e-10!GO:0003712;transcription cofactor activity;2.06103335838383e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.94281996403403e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.94281996403403e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.94281996403403e-10!GO:0016568;chromatin modification;3.2167484829663e-10!GO:0008219;cell death;5.12524708199819e-10!GO:0016265;death;5.12524708199819e-10!GO:0065002;intracellular protein transport across a membrane;5.87583821805877e-10!GO:0016740;transferase activity;5.90538519010304e-10!GO:0016192;vesicle-mediated transport;7.34480301226805e-10!GO:0006403;RNA localization;8.37380511003654e-10!GO:0050657;nucleic acid transport;9.73728266764328e-10!GO:0051236;establishment of RNA localization;9.73728266764328e-10!GO:0050658;RNA transport;9.73728266764328e-10!GO:0043038;amino acid activation;1.11418674834871e-09!GO:0006418;tRNA aminoacylation for protein translation;1.11418674834871e-09!GO:0043039;tRNA aminoacylation;1.11418674834871e-09!GO:0016607;nuclear speck;1.42236527613182e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.51909859142352e-09!GO:0050794;regulation of cellular process;2.61249497912998e-09!GO:0009056;catabolic process;3.1217743290214e-09!GO:0022403;cell cycle phase;3.77364939783767e-09!GO:0046930;pore complex;4.25561949859962e-09!GO:0007067;mitosis;4.8477825184512e-09!GO:0000087;M phase of mitotic cell cycle;4.90360530605438e-09!GO:0008565;protein transporter activity;5.85420806698472e-09!GO:0051726;regulation of cell cycle;6.32831018027912e-09!GO:0051301;cell division;9.04054212917548e-09!GO:0000074;regulation of progression through cell cycle;1.16373664909073e-08!GO:0017038;protein import;1.3293600718528e-08!GO:0051188;cofactor biosynthetic process;1.48169037319135e-08!GO:0007005;mitochondrion organization and biogenesis;1.56958865605442e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.58355762306451e-08!GO:0008639;small protein conjugating enzyme activity;1.63570741772581e-08!GO:0005768;endosome;1.94548731888338e-08!GO:0009060;aerobic respiration;2.61368831837214e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.63044532772232e-08!GO:0004842;ubiquitin-protein ligase activity;3.63044532772232e-08!GO:0044431;Golgi apparatus part;4.59390976542603e-08!GO:0032446;protein modification by small protein conjugation;4.77640013534296e-08!GO:0006461;protein complex assembly;5.05679881447246e-08!GO:0000785;chromatin;5.18617449328235e-08!GO:0019787;small conjugating protein ligase activity;6.07389302047089e-08!GO:0051028;mRNA transport;6.55203864836744e-08!GO:0016779;nucleotidyltransferase activity;7.63387028882758e-08!GO:0016567;protein ubiquitination;8.72926259816589e-08!GO:0006333;chromatin assembly or disassembly;8.77637252039664e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.46106719603106e-07!GO:0009259;ribonucleotide metabolic process;1.47431233930542e-07!GO:0045333;cellular respiration;1.50081083528544e-07!GO:0005793;ER-Golgi intermediate compartment;1.51484134488501e-07!GO:0019222;regulation of metabolic process;2.04684647430116e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.04684647430116e-07!GO:0000279;M phase;2.22228608854413e-07!GO:0016881;acid-amino acid ligase activity;2.2682769235835e-07!GO:0006163;purine nucleotide metabolic process;3.95624506789648e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.00978519998945e-07!GO:0000139;Golgi membrane;6.69503408076452e-07!GO:0065004;protein-DNA complex assembly;6.8803885509848e-07!GO:0016491;oxidoreductase activity;7.92233942351118e-07!GO:0019829;cation-transporting ATPase activity;9.18812975437527e-07!GO:0044440;endosomal part;9.26596729396303e-07!GO:0010008;endosome membrane;9.26596729396303e-07!GO:0009108;coenzyme biosynthetic process;9.94530609959189e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.01996900628866e-06!GO:0009150;purine ribonucleotide metabolic process;1.02116710411353e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.16074860030158e-06!GO:0016787;hydrolase activity;1.16074860030158e-06!GO:0015986;ATP synthesis coupled proton transport;1.16426303113896e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.16426303113896e-06!GO:0005667;transcription factor complex;1.22777542177943e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.39010805408314e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.43739257927487e-06!GO:0000245;spliceosome assembly;1.56152575406187e-06!GO:0030120;vesicle coat;1.71041651290335e-06!GO:0030662;coated vesicle membrane;1.71041651290335e-06!GO:0009260;ribonucleotide biosynthetic process;1.86284035390985e-06!GO:0005788;endoplasmic reticulum lumen;1.98624454426315e-06!GO:0006164;purine nucleotide biosynthetic process;2.34946001525623e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.43645993461836e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.43645993461836e-06!GO:0006793;phosphorus metabolic process;2.43645993461836e-06!GO:0006796;phosphate metabolic process;2.43645993461836e-06!GO:0009141;nucleoside triphosphate metabolic process;2.87098815502619e-06!GO:0048475;coated membrane;2.95522454342979e-06!GO:0030117;membrane coat;2.95522454342979e-06!GO:0051246;regulation of protein metabolic process;2.9978907319611e-06!GO:0005762;mitochondrial large ribosomal subunit;3.22817564300195e-06!GO:0000315;organellar large ribosomal subunit;3.22817564300195e-06!GO:0043566;structure-specific DNA binding;3.22817564300195e-06!GO:0043067;regulation of programmed cell death;3.56073587328542e-06!GO:0015630;microtubule cytoskeleton;3.65281396498612e-06!GO:0046034;ATP metabolic process;3.9590808225666e-06!GO:0042981;regulation of apoptosis;4.22696604921678e-06!GO:0003697;single-stranded DNA binding;4.36449610970303e-06!GO:0045259;proton-transporting ATP synthase complex;4.40749052060125e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.53086474777257e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.53086474777257e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.61121529907988e-06!GO:0003713;transcription coactivator activity;5.8135783776037e-06!GO:0009152;purine ribonucleotide biosynthetic process;5.91606067067776e-06!GO:0006261;DNA-dependent DNA replication;5.96435376647249e-06!GO:0008033;tRNA processing;6.08413470801342e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.82952976701063e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.82952976701063e-06!GO:0016563;transcription activator activity;9.08815214381903e-06!GO:0051170;nuclear import;9.53643876809092e-06!GO:0043623;cellular protein complex assembly;9.59489915237308e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.76229276712305e-06!GO:0006099;tricarboxylic acid cycle;1.00922388417763e-05!GO:0046356;acetyl-CoA catabolic process;1.00922388417763e-05!GO:0051427;hormone receptor binding;1.03374312594704e-05!GO:0006754;ATP biosynthetic process;1.05883947806651e-05!GO:0006753;nucleoside phosphate metabolic process;1.05883947806651e-05!GO:0006091;generation of precursor metabolites and energy;1.17355171594011e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.30031215126609e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.32006500739496e-05!GO:0000151;ubiquitin ligase complex;1.5849921200427e-05!GO:0031323;regulation of cellular metabolic process;1.67819753805885e-05!GO:0050662;coenzyme binding;1.70293849417202e-05!GO:0006606;protein import into nucleus;1.71673041048766e-05!GO:0003724;RNA helicase activity;1.93605121088967e-05!GO:0016853;isomerase activity;2.04209251452452e-05!GO:0031324;negative regulation of cellular metabolic process;2.23857125971093e-05!GO:0031988;membrane-bound vesicle;2.25603797392643e-05!GO:0035257;nuclear hormone receptor binding;2.29323958667691e-05!GO:0016564;transcription repressor activity;2.32316818875184e-05!GO:0016310;phosphorylation;2.50665951159788e-05!GO:0050789;regulation of biological process;2.77717845150351e-05!GO:0003899;DNA-directed RNA polymerase activity;2.82912872492749e-05!GO:0048523;negative regulation of cellular process;2.8958422122718e-05!GO:0009117;nucleotide metabolic process;3.05628255325969e-05!GO:0006084;acetyl-CoA metabolic process;3.12639854619307e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.15542956281433e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.19378070356864e-05!GO:0006350;transcription;3.2470431653604e-05!GO:0004298;threonine endopeptidase activity;3.46432262507983e-05!GO:0043021;ribonucleoprotein binding;3.73910542250117e-05!GO:0006082;organic acid metabolic process;3.76023883310131e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.79459831103879e-05!GO:0019752;carboxylic acid metabolic process;4.02407403275746e-05!GO:0000314;organellar small ribosomal subunit;4.04782820951661e-05!GO:0005763;mitochondrial small ribosomal subunit;4.04782820951661e-05!GO:0006401;RNA catabolic process;4.16834347911619e-05!GO:0005770;late endosome;4.57006143374974e-05!GO:0006613;cotranslational protein targeting to membrane;4.67060847232256e-05!GO:0009109;coenzyme catabolic process;4.72708406819596e-05!GO:0044452;nucleolar part;4.75170278086522e-05!GO:0051168;nuclear export;4.87269519470981e-05!GO:0048037;cofactor binding;5.14724136590425e-05!GO:0009892;negative regulation of metabolic process;6.21501320972636e-05!GO:0016363;nuclear matrix;7.26884570298058e-05!GO:0016741;transferase activity, transferring one-carbon groups;8.57720494766572e-05!GO:0005813;centrosome;8.87006538831795e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.20668909015358e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.82702511436537e-05!GO:0051187;cofactor catabolic process;0.000100593789229748!GO:0006402;mRNA catabolic process;0.000100930930515104!GO:0006916;anti-apoptosis;0.000116091865136252!GO:0051789;response to protein stimulus;0.000122935379124164!GO:0006986;response to unfolded protein;0.000122935379124164!GO:0045454;cell redox homeostasis;0.000125012977228282!GO:0031072;heat shock protein binding;0.000129034617225363!GO:0005815;microtubule organizing center;0.000131162709115547!GO:0015980;energy derivation by oxidation of organic compounds;0.000131162709115547!GO:0008168;methyltransferase activity;0.00013136504528786!GO:0043069;negative regulation of programmed cell death;0.000134524930656695!GO:0005798;Golgi-associated vesicle;0.000143815431054012!GO:0006752;group transfer coenzyme metabolic process;0.000144436558463103!GO:0031982;vesicle;0.000148095379824048!GO:0051287;NAD binding;0.000150274925667459!GO:0005525;GTP binding;0.000154166194347352!GO:0016859;cis-trans isomerase activity;0.000162036258667651!GO:0000049;tRNA binding;0.000169618840733654!GO:0031497;chromatin assembly;0.00017255954114325!GO:0048471;perinuclear region of cytoplasm;0.000177148220693244!GO:0031410;cytoplasmic vesicle;0.000219371019701888!GO:0008654;phospholipid biosynthetic process;0.000221522938463111!GO:0003702;RNA polymerase II transcription factor activity;0.000227422968185455!GO:0010468;regulation of gene expression;0.000231141453615496!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000241123129443929!GO:0007264;small GTPase mediated signal transduction;0.00025694786824988!GO:0043066;negative regulation of apoptosis;0.000275478310195802!GO:0003714;transcription corepressor activity;0.000290697516388072!GO:0016481;negative regulation of transcription;0.000300472118263494!GO:0006520;amino acid metabolic process;0.000317638119913344!GO:0008186;RNA-dependent ATPase activity;0.000318652615313055!GO:0006414;translational elongation;0.000326848165700983!GO:0043681;protein import into mitochondrion;0.000331594757697966!GO:0006839;mitochondrial transport;0.000335051638153135!GO:0030867;rough endoplasmic reticulum membrane;0.000359948965461424!GO:0005769;early endosome;0.000376948935045312!GO:0004518;nuclease activity;0.000379604818201!GO:0045786;negative regulation of progression through cell cycle;0.000391131161591206!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000397709738736609!GO:0004576;oligosaccharyl transferase activity;0.000415322234582382!GO:0006334;nucleosome assembly;0.00043118602006565!GO:0003682;chromatin binding;0.000439383441202765!GO:0051252;regulation of RNA metabolic process;0.000488010747330201!GO:0003729;mRNA binding;0.000488010747330201!GO:0006302;double-strand break repair;0.000488077563180486!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000491854252825703!GO:0008094;DNA-dependent ATPase activity;0.00056392951395832!GO:0032774;RNA biosynthetic process;0.000576690472235373!GO:0048519;negative regulation of biological process;0.000619880850827783!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00062480753473708!GO:0006351;transcription, DNA-dependent;0.000639320674287519!GO:0005657;replication fork;0.000651003666439404!GO:0008250;oligosaccharyl transferase complex;0.000660980135178321!GO:0006626;protein targeting to mitochondrion;0.000815341438353589!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000815341438353589!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000828988306551357!GO:0005819;spindle;0.000856529251521039!GO:0004004;ATP-dependent RNA helicase activity;0.00088943094523452!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000893304359739529!GO:0019899;enzyme binding;0.0009067324551925!GO:0045941;positive regulation of transcription;0.000962161519329902!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102007195641306!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102007195641306!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102007195641306!GO:0051920;peroxiredoxin activity;0.00102007195641306!GO:0031968;organelle outer membrane;0.00103004090899759!GO:0003690;double-stranded DNA binding;0.00103151225365487!GO:0043488;regulation of mRNA stability;0.00103697270622887!GO:0043487;regulation of RNA stability;0.00103697270622887!GO:0005741;mitochondrial outer membrane;0.00104113202926592!GO:0007051;spindle organization and biogenesis;0.00105620889606476!GO:0033116;ER-Golgi intermediate compartment membrane;0.0010979504805448!GO:0008022;protein C-terminus binding;0.00111274221343801!GO:0005885;Arp2/3 protein complex;0.00112155424818016!GO:0003678;DNA helicase activity;0.00112855630879896!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00116971044172623!GO:0019867;outer membrane;0.0011935777290963!GO:0032561;guanyl ribonucleotide binding;0.00121490333395932!GO:0019001;guanyl nucleotide binding;0.00121490333395932!GO:0006612;protein targeting to membrane;0.00123727639016136!GO:0065009;regulation of a molecular function;0.00123773983638165!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00127908445186877!GO:0051329;interphase of mitotic cell cycle;0.00128930168918842!GO:0035258;steroid hormone receptor binding;0.00130162800069366!GO:0051052;regulation of DNA metabolic process;0.00151694037071663!GO:0045893;positive regulation of transcription, DNA-dependent;0.00165312604707071!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00174887614310738!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00175055557253902!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00183106940558315!GO:0008234;cysteine-type peptidase activity;0.0018523787769243!GO:0000059;protein import into nucleus, docking;0.00186637717778055!GO:0032508;DNA duplex unwinding;0.00189962599135747!GO:0032392;DNA geometric change;0.00189962599135747!GO:0006338;chromatin remodeling;0.00189962599135747!GO:0031252;leading edge;0.00189962599135747!GO:0003924;GTPase activity;0.00195628257784573!GO:0019843;rRNA binding;0.00200540955417711!GO:0007006;mitochondrial membrane organization and biogenesis;0.00202196411056015!GO:0051325;interphase;0.00215824983249722!GO:0006595;polyamine metabolic process;0.00215824983249722!GO:0005791;rough endoplasmic reticulum;0.0021945787437244!GO:0006352;transcription initiation;0.00237786825090641!GO:0004674;protein serine/threonine kinase activity;0.00244016667623098!GO:0016272;prefoldin complex;0.00244016667623098!GO:0018196;peptidyl-asparagine modification;0.00269647331824091!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00269647331824091!GO:0006891;intra-Golgi vesicle-mediated transport;0.00281602951408765!GO:0005048;signal sequence binding;0.00281888342243515!GO:0030658;transport vesicle membrane;0.00288918077413868!GO:0006611;protein export from nucleus;0.00295626887122467!GO:0030176;integral to endoplasmic reticulum membrane;0.00297153566919396!GO:0015631;tubulin binding;0.0030361657769976!GO:0001889;liver development;0.00303651241499207!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00320225605559066!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00321047109727896!GO:0015399;primary active transmembrane transporter activity;0.00321047109727896!GO:0000075;cell cycle checkpoint;0.00326156520070514!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00332815041218092!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00337005265543878!GO:0003746;translation elongation factor activity;0.00337305950125851!GO:0006519;amino acid and derivative metabolic process;0.00345838230344033!GO:0030118;clathrin coat;0.00357258930878685!GO:0008632;apoptotic program;0.00377555033640487!GO:0016251;general RNA polymerase II transcription factor activity;0.00385694135829021!GO:0004527;exonuclease activity;0.00392119254453478!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00401671032235645!GO:0006650;glycerophospholipid metabolic process;0.00407182652725325!GO:0004540;ribonuclease activity;0.00419313719924878!GO:0005773;vacuole;0.00423606001378871!GO:0048487;beta-tubulin binding;0.00423606001378871!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00425225446212337!GO:0015002;heme-copper terminal oxidase activity;0.00425225446212337!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00425225446212337!GO:0004129;cytochrome-c oxidase activity;0.00425225446212337!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00427195482558294!GO:0005874;microtubule;0.00435888644039551!GO:0044262;cellular carbohydrate metabolic process;0.00442877377510704!GO:0006268;DNA unwinding during replication;0.00447400619051623!GO:0005684;U2-dependent spliceosome;0.00489061003431863!GO:0048500;signal recognition particle;0.00512693373316107!GO:0046474;glycerophospholipid biosynthetic process;0.00512693373316107!GO:0045449;regulation of transcription;0.00512693373316107!GO:0030119;AP-type membrane coat adaptor complex;0.00533554796092006!GO:0009451;RNA modification;0.00549004515487787!GO:0008652;amino acid biosynthetic process;0.00550498836148383!GO:0009165;nucleotide biosynthetic process;0.00552141681348357!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00557235224797329!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00557235224797329!GO:0006730;one-carbon compound metabolic process;0.00557235224797329!GO:0042770;DNA damage response, signal transduction;0.00557235224797329!GO:0030145;manganese ion binding;0.00557235224797329!GO:0000775;chromosome, pericentric region;0.00564583017562913!GO:0008139;nuclear localization sequence binding;0.00586477783574309!GO:0006405;RNA export from nucleus;0.00638854210038469!GO:0004680;casein kinase activity;0.00647465043443536!GO:0030663;COPI coated vesicle membrane;0.00649175206772284!GO:0030126;COPI vesicle coat;0.00649175206772284!GO:0043414;biopolymer methylation;0.00676231827658291!GO:0005758;mitochondrial intermembrane space;0.00681584030788688!GO:0008287;protein serine/threonine phosphatase complex;0.00682361842129025!GO:0000792;heterochromatin;0.00689936924048875!GO:0005637;nuclear inner membrane;0.00695663701111928!GO:0019318;hexose metabolic process;0.00703068616897296!GO:0043022;ribosome binding;0.00744341708102878!GO:0030131;clathrin adaptor complex;0.0075715795210567!GO:0005996;monosaccharide metabolic process;0.00760993130176683!GO:0005905;coated pit;0.00770329323851277!GO:0006289;nucleotide-excision repair;0.00787593507270643!GO:0051087;chaperone binding;0.00787804659466019!GO:0000096;sulfur amino acid metabolic process;0.00793697880504245!GO:0022890;inorganic cation transmembrane transporter activity;0.00796242797449793!GO:0000178;exosome (RNase complex);0.00796602559826537!GO:0032259;methylation;0.0080015014238186!GO:0030521;androgen receptor signaling pathway;0.00803739252171854!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00804379431334687!GO:0030660;Golgi-associated vesicle membrane;0.00808158925756516!GO:0009303;rRNA transcription;0.00812244604858471!GO:0008637;apoptotic mitochondrial changes;0.00830855923188913!GO:0046489;phosphoinositide biosynthetic process;0.00846215627207908!GO:0048522;positive regulation of cellular process;0.00851616871424892!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00881103530173876!GO:0006383;transcription from RNA polymerase III promoter;0.00934590027259634!GO:0004532;exoribonuclease activity;0.00949047887431066!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00949047887431066!GO:0008312;7S RNA binding;0.00949091541604285!GO:0005832;chaperonin-containing T-complex;0.0095840239969929!GO:0006310;DNA recombination;0.00981811715225862!GO:0006376;mRNA splice site selection;0.00981811715225862!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00981811715225862!GO:0030133;transport vesicle;0.00988714440618484!GO:0009116;nucleoside metabolic process;0.00997814177661118!GO:0042802;identical protein binding;0.00997814177661118!GO:0030659;cytoplasmic vesicle membrane;0.0102574925747483!GO:0003711;transcription elongation regulator activity;0.0102639556574408!GO:0030384;phosphoinositide metabolic process;0.0103025317532645!GO:0000323;lytic vacuole;0.0103777670119135!GO:0005764;lysosome;0.0103777670119135!GO:0045892;negative regulation of transcription, DNA-dependent;0.0104444304336976!GO:0043284;biopolymer biosynthetic process;0.0105163995918663!GO:0030880;RNA polymerase complex;0.0105696799480718!GO:0003684;damaged DNA binding;0.0106184186373942!GO:0008017;microtubule binding;0.0109248253955562!GO:0040029;regulation of gene expression, epigenetic;0.0111830799517594!GO:0043189;H4/H2A histone acetyltransferase complex;0.0112698148554763!GO:0007088;regulation of mitosis;0.01135050304283!GO:0007017;microtubule-based process;0.0113535428116393!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0117093794750189!GO:0015992;proton transport;0.0117848568822688!GO:0006818;hydrogen transport;0.0124249709065903!GO:0031970;organelle envelope lumen;0.0125771957476968!GO:0006118;electron transport;0.0125771957476968!GO:0007243;protein kinase cascade;0.0126238960517029!GO:0007052;mitotic spindle organization and biogenesis;0.0126449247853082!GO:0006417;regulation of translation;0.0127013622524122!GO:0008276;protein methyltransferase activity;0.0127797133223112!GO:0000287;magnesium ion binding;0.0129292898835062!GO:0030134;ER to Golgi transport vesicle;0.0134455653552665!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0135379983355076!GO:0035267;NuA4 histone acetyltransferase complex;0.0136840468679493!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0136840468679493!GO:0030137;COPI-coated vesicle;0.0137492567703595!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.013835530455893!GO:0045047;protein targeting to ER;0.013835530455893!GO:0030127;COPII vesicle coat;0.0143331572398968!GO:0012507;ER to Golgi transport vesicle membrane;0.0143331572398968!GO:0048146;positive regulation of fibroblast proliferation;0.0143965747522272!GO:0016301;kinase activity;0.0145066376520174!GO:0006984;ER-nuclear signaling pathway;0.0146052633001335!GO:0031902;late endosome membrane;0.0146769488671099!GO:0006400;tRNA modification;0.0149318347087159!GO:0046483;heterocycle metabolic process;0.015474284477494!GO:0008629;induction of apoptosis by intracellular signals;0.0157851238959883!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.016130445420495!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.016164443579581!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0163346401487863!GO:0006355;regulation of transcription, DNA-dependent;0.0163545692629089!GO:0051338;regulation of transferase activity;0.0167105306826204!GO:0043492;ATPase activity, coupled to movement of substances;0.0172384129365304!GO:0031625;ubiquitin protein ligase binding;0.017500525544032!GO:0000776;kinetochore;0.017500525544032!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0175213002056221!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0175213002056221!GO:0051101;regulation of DNA binding;0.0175213002056221!GO:0004003;ATP-dependent DNA helicase activity;0.0176799565712714!GO:0006275;regulation of DNA replication;0.0177693078709849!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0179736759968178!GO:0048144;fibroblast proliferation;0.0179736759968178!GO:0048145;regulation of fibroblast proliferation;0.0179736759968178!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0179736759968178!GO:0000428;DNA-directed RNA polymerase complex;0.0179736759968178!GO:0000086;G2/M transition of mitotic cell cycle;0.0181814710191976!GO:0065007;biological regulation;0.0183322159164253!GO:0046983;protein dimerization activity;0.0186913551866297!GO:0050790;regulation of catalytic activity;0.0187307295151946!GO:0006354;RNA elongation;0.0193287966976182!GO:0006733;oxidoreduction coenzyme metabolic process;0.019606937001308!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0198892668104287!GO:0044433;cytoplasmic vesicle part;0.0198892668104287!GO:0016197;endosome transport;0.0200990531398118!GO:0006892;post-Golgi vesicle-mediated transport;0.0203739974046357!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0205648127587834!GO:0004722;protein serine/threonine phosphatase activity;0.020669790757107!GO:0000123;histone acetyltransferase complex;0.020669790757107!GO:0031901;early endosome membrane;0.0206980181089561!GO:0033673;negative regulation of kinase activity;0.0210172332227992!GO:0006469;negative regulation of protein kinase activity;0.0210172332227992!GO:0016584;nucleosome positioning;0.0211197664839761!GO:0008361;regulation of cell size;0.0211197664839761!GO:0006596;polyamine biosynthetic process;0.0215936252825544!GO:0001558;regulation of cell growth;0.0217324402770121!GO:0008601;protein phosphatase type 2A regulator activity;0.0217620356475168!GO:0006506;GPI anchor biosynthetic process;0.0229962496182338!GO:0008538;proteasome activator activity;0.023294459176283!GO:0012506;vesicle membrane;0.0233709167609882!GO:0046966;thyroid hormone receptor binding;0.0235336950963528!GO:0003677;DNA binding;0.0235336950963528!GO:0046467;membrane lipid biosynthetic process;0.0235336950963528!GO:0007030;Golgi organization and biogenesis;0.0235680929113962!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0235894985951751!GO:0008180;signalosome;0.0236976467689483!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0238049778169621!GO:0043549;regulation of kinase activity;0.0238066280566262!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0238911391541416!GO:0005669;transcription factor TFIID complex;0.0240888707795475!GO:0031529;ruffle organization and biogenesis;0.0242706802775952!GO:0017134;fibroblast growth factor binding;0.0243263047030526!GO:0007265;Ras protein signal transduction;0.0246486619743934!GO:0006458;'de novo' protein folding;0.0246486619743934!GO:0051084;'de novo' posttranslational protein folding;0.0246486619743934!GO:0016790;thiolester hydrolase activity;0.0246510409467767!GO:0007010;cytoskeleton organization and biogenesis;0.0246644660128483!GO:0031124;mRNA 3'-end processing;0.0253674867617141!GO:0016615;malate dehydrogenase activity;0.0253674867617141!GO:0019783;small conjugating protein-specific protease activity;0.0260091911276693!GO:0030125;clathrin vesicle coat;0.0260605063344168!GO:0030665;clathrin coated vesicle membrane;0.0260605063344168!GO:0030132;clathrin coat of coated pit;0.0263908679866304!GO:0008408;3'-5' exonuclease activity;0.0264111999197684!GO:0030503;regulation of cell redox homeostasis;0.0264111999197684!GO:0006779;porphyrin biosynthetic process;0.0264352890733951!GO:0033014;tetrapyrrole biosynthetic process;0.0264352890733951!GO:0016049;cell growth;0.0275293850511758!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0275293850511758!GO:0010257;NADH dehydrogenase complex assembly;0.0275293850511758!GO:0033108;mitochondrial respiratory chain complex assembly;0.0275293850511758!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0280903629946284!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0288725027314977!GO:0006505;GPI anchor metabolic process;0.029571710758096!GO:0006144;purine base metabolic process;0.0295884942720341!GO:0006740;NADPH regeneration;0.0304619185734735!GO:0006098;pentose-phosphate shunt;0.0304619185734735!GO:0000209;protein polyubiquitination;0.0305194767701329!GO:0043596;nuclear replication fork;0.0314513880135172!GO:0006066;alcohol metabolic process;0.0314557254578033!GO:0008610;lipid biosynthetic process;0.0315081605270857!GO:0008092;cytoskeletal protein binding;0.031715709923604!GO:0006767;water-soluble vitamin metabolic process;0.0320124719786825!GO:0006672;ceramide metabolic process;0.0322716981274714!GO:0051348;negative regulation of transferase activity;0.0322716981274714!GO:0005095;GTPase inhibitor activity;0.0324625217313513!GO:0006769;nicotinamide metabolic process;0.0329087229145079!GO:0042393;histone binding;0.0331347022841279!GO:0031326;regulation of cellular biosynthetic process;0.0335013599829275!GO:0006497;protein amino acid lipidation;0.0336157195968026!GO:0004843;ubiquitin-specific protease activity;0.0336189119723426!GO:0017166;vinculin binding;0.033687740352573!GO:0050681;androgen receptor binding;0.0343619679323372!GO:0022415;viral reproductive process;0.0347227194670807!GO:0006778;porphyrin metabolic process;0.0348677666087572!GO:0033013;tetrapyrrole metabolic process;0.0348677666087572!GO:0000097;sulfur amino acid biosynthetic process;0.0350408545635513!GO:0000175;3'-5'-exoribonuclease activity;0.0350454521705292!GO:0005784;translocon complex;0.0350621088955464!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0351514683077399!GO:0008213;protein amino acid alkylation;0.0351514683077399!GO:0006479;protein amino acid methylation;0.0351514683077399!GO:0001836;release of cytochrome c from mitochondria;0.0355660467724517!GO:0006807;nitrogen compound metabolic process;0.0355692708341976!GO:0051128;regulation of cellular component organization and biogenesis;0.0362246899337023!GO:0042769;DNA damage response, detection of DNA damage;0.0365951706617485!GO:0048012;hepatocyte growth factor receptor signaling pathway;0.0365951706617485!GO:0005008;hepatocyte growth factor receptor activity;0.0365951706617485!GO:0051450;myoblast proliferation;0.0365951706617485!GO:0003756;protein disulfide isomerase activity;0.0366357914692899!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0366357914692899!GO:0032200;telomere organization and biogenesis;0.0367027622391434!GO:0000723;telomere maintenance;0.0367027622391434!GO:0000159;protein phosphatase type 2A complex;0.0368874000911548!GO:0016791;phosphoric monoester hydrolase activity;0.0370500450267943!GO:0045045;secretory pathway;0.0371023698590815!GO:0000339;RNA cap binding;0.0371854905819371!GO:0016126;sterol biosynthetic process;0.0374121968895287!GO:0006270;DNA replication initiation;0.0379106246272287!GO:0043407;negative regulation of MAP kinase activity;0.0379941583668943!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.038394064252981!GO:0009112;nucleobase metabolic process;0.0385238208518575!GO:0030518;steroid hormone receptor signaling pathway;0.0387455827535859!GO:0045859;regulation of protein kinase activity;0.0387455827535859!GO:0046519;sphingoid metabolic process;0.0391869352895055!GO:0043065;positive regulation of apoptosis;0.0394584459005945!GO:0042147;retrograde transport, endosome to Golgi;0.0396074950956862!GO:0006783;heme biosynthetic process;0.0399365083041624!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0399976182530736!GO:0009308;amine metabolic process;0.0400805128443976!GO:0004526;ribonuclease P activity;0.0404146371280192!GO:0005938;cell cortex;0.0408780946721721!GO:0009070;serine family amino acid biosynthetic process;0.041891769445772!GO:0006695;cholesterol biosynthetic process;0.0424540595780208!GO:0006516;glycoprotein catabolic process;0.0425035415009176!GO:0044438;microbody part;0.0425035415009176!GO:0044439;peroxisomal part;0.0425035415009176!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0425457357997906!GO:0016044;membrane organization and biogenesis;0.0425843172146559!GO:0009119;ribonucleoside metabolic process;0.0428599771632225!GO:0005876;spindle microtubule;0.0437239011555397!GO:0004197;cysteine-type endopeptidase activity;0.0446932128246865!GO:0035035;histone acetyltransferase binding;0.0461189773998029!GO:0043068;positive regulation of programmed cell death;0.0462962526481962!GO:0008097;5S rRNA binding;0.0462962526481962!GO:0006378;mRNA polyadenylation;0.0467473761210504!GO:0016311;dephosphorylation;0.0473528659944863!GO:0030027;lamellipodium;0.0483494582056014!GO:0004549;tRNA-specific ribonuclease activity;0.0492031007110386!GO:0051539;4 iron, 4 sulfur cluster binding;0.049297680820542!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0494169462713254!GO:0030433;ER-associated protein catabolic process;0.0494904145280526!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0494904145280526!GO:0051085;chaperone cofactor-dependent protein folding;0.0494946394460627!GO:0004177;aminopeptidase activity;0.0495849700494094!GO:0000786;nucleosome;0.0495880552151816!GO:0000228;nuclear chromosome;0.0496450663295896!GO:0006564;L-serine biosynthetic process;0.0497685700435063!GO:0006108;malate metabolic process;0.0497762913903921!GO:0004221;ubiquitin thiolesterase activity;0.0497762913903921!GO:0004682;protein kinase CK2 activity;0.0498354947068624!GO:0009225;nucleotide-sugar metabolic process;0.0499068889547388!GO:0004448;isocitrate dehydrogenase activity;0.0499690672990871 | |||
|sample_id=10612 | |sample_id=10612 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=HOX{A6,A7,B6,B7}:2.56850701599;SNAI1..3:2.28290723722;ZEB1:2.14140224788;HNF1A:1.89448765008;MYOD1:1.48453577939;VSX1,2:1.43498735317;POU2F1..3:1.28271157387;bHLH_family:1.25115933962;LMO2:1.21808273848;ADNP_IRX_SIX_ZHX:1.10429417205;FOX{I1,J2}:1.06690900386;ZBTB16:1.06122270307;HNF4A_NR2F1,2:1.05269400691;ONECUT1,2:0.883918582342;POU6F1:0.821919784506;FOXN1:0.792127180071;FOXQ1:0.751053915044;TP53:0.748443295864;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.686743757509;FOXA2:0.685187625108;ELK1,4_GABP{A,B1}:0.676359867018;PBX1:0.668364869113;FOXD3:0.664110885244;BREu{core}:0.626904210746;RFX1:0.559544861133;XCPE1{core}:0.552183289151;RBPJ:0.502854871832;NFY{A,B,C}:0.49978104623;STAT5{A,B}:0.495384887037;RFX2..5_RFXANK_RFXAP:0.472728074245;NANOG:0.472287269119;YY1:0.46890766495;ZNF148:0.455006449608;NKX2-1,4:0.425120881171;TEF:0.42245403627;SOX2:0.399058209127;NR6A1:0.394086707322;HSF1,2:0.393065488366;MYB:0.367004634419;NR5A1,2:0.366538268228;EP300:0.359164539453;CDX1,2,4:0.355789266122;NKX2-3_NKX2-5:0.346682553571;TFAP2{A,C}:0.336348644349;IKZF2:0.33601973248;ATF4:0.327885954393;CUX2:0.318499306198;SOX{8,9,10}:0.316698509138;ZNF143:0.316274482987;CDC5L:0.302234663934;CRX:0.270073015735;PAX4:0.266998921973;LHX3,4:0.249122924504;AIRE:0.242149218161;T:0.238498159546;E2F1..5:0.234542495651;NKX3-2:0.229403964596;OCT4_SOX2{dimer}:0.227438528942;PAX8:0.206872243436;TFAP2B:0.200961815335;MTE{core}:0.195730841929;PITX1..3:0.193975361724;MTF1:0.173933603407;EN1,2:0.161396023765;POU5F1:0.152285640727;PRRX1,2:0.125204540647;ESRRA:0.107288141035;PDX1:0.103583507783;AHR_ARNT_ARNT2:0.102507166503;TOPORS:0.101574954491;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.090311987434;ZNF384:0.0634695616154;HIC1:0.0560117974057;FOX{D1,D2}:0.0285887243489;HLF:0.0145438367826;FOX{F1,F2,J1}:0.0081968614289;GATA6:-0.00114560891294;CEBPA,B_DDIT3:-0.00321602148782;RXRA_VDR{dimer}:-0.0196169415586;NKX3-1:-0.0205543522852;LEF1_TCF7_TCF7L1,2:-0.0229398886518;NRF1:-0.0434269511203;SP1:-0.0548365598902;IKZF1:-0.0686241203213;TFDP1:-0.0712599730246;DBP:-0.0806918721721;GTF2A1,2:-0.0899351244556;FOS_FOS{B,L1}_JUN{B,D}:-0.0973624119349;REST:-0.108365216661;ARID5B:-0.120319721332;PAX2:-0.123873320306;EVI1:-0.129645865603;HOX{A5,B5}:-0.161295093298;ZFP161:-0.168132290422;FOSL2:-0.202035844748;NKX6-1,2:-0.207195302908;ESR1:-0.214749206663;ATF5_CREB3:-0.215739561768;ZIC1..3:-0.223982177786;SOX17:-0.2248983276;STAT1,3:-0.229794390033;FOXO1,3,4:-0.232297872679;ALX1:-0.24464857159;NFE2:-0.248119101164;IRF7:-0.252180356216;TBP:-0.252793742012;FOXP1:-0.253098915557;BPTF:-0.263961454061;EBF1:-0.264559593406;GFI1:-0.27223705952;MED-1{core}:-0.288328693867;TFCP2:-0.292770218177;BACH2:-0.306454261749;MEF2{A,B,C,D}:-0.312511128912;FOXM1:-0.341698859695;UFEwm:-0.359597311838;HIF1A:-0.377420382481;NFIX:-0.380760871046;ELF1,2,4:-0.385422648096;HBP1_HMGB_SSRP1_UBTF:-0.40091823701;ATF2:-0.404459270658;TEAD1:-0.406171251703;ATF6:-0.409511889522;FOXP3:-0.414682208486;PATZ1:-0.428229259325;PAX6:-0.448939071507;NFKB1_REL_RELA:-0.450850504146;PPARG:-0.453569598511;NR3C1:-0.453773489328;ZBTB6:-0.465537787683;POU1F1:-0.495670121581;DMAP1_NCOR{1,2}_SMARC:-0.532953719859;TLX1..3_NFIC{dimer}:-0.541561273934;FOXL1:-0.547670702881;HOX{A4,D4}:-0.554334191519;KLF4:-0.556786189417;TAL1_TCF{3,4,12}:-0.574193610049;SPZ1:-0.575662353226;SPIB:-0.577491454354;AR:-0.600019496459;RREB1:-0.602672261157;SOX5:-0.604334248369;NFIL3:-0.605255331245;HAND1,2:-0.62269417018;SPI1:-0.623878884996;GTF2I:-0.63364184302;TBX4,5:-0.651250928671;JUN:-0.667151254511;ETS1,2:-0.675490163506;NR1H4:-0.683808589211;TLX2:-0.683942539004;ZNF238:-0.688158354734;IRF1,2:-0.688181213295;EGR1..3:-0.693393631529;RUNX1..3:-0.701139965603;CREB1:-0.715514960382;ZNF423:-0.716069419629;GLI1..3:-0.742732779373;MZF1:-0.754580873997;PRDM1:-0.773776935494;PAX3,7:-0.77395308465;XBP1:-0.782914489266;MAZ:-0.78484130032;NFE2L2:-0.791481843371;POU3F1..4:-0.804142260274;ALX4:-0.834274421786;RORA:-0.836377494691;MYBL2:-0.837047134579;STAT2,4,6:-0.837222722183;HMGA1,2:-0.859735491819;GFI1B:-0.86315346122;PAX1,9:-0.864144418354;HOXA9_MEIS1:-0.912339925001;MYFfamily:-0.97187269515;NHLH1,2:-0.981216371302;GATA4:-0.994966502067;SREBF1,2:-1.00001656495;GZF1:-1.03199526179;MAFB:-1.03266293662;NKX2-2,8:-1.05668021869;PAX5:-1.07479015681;HES1:-1.10432649973;TGIF1:-1.18096175574;SMAD1..7,9:-1.24353264606;GCM1,2:-1.32592053298;SRF:-1.33358653636;NANOG{mouse}:-1.35079096166;TFAP4:-1.41047895678;NFATC1..3:-1.47425258812;RXR{A,B,G}:-1.93068798396;NFE2L1:-2.00149616786;HMX1:-2.20241824073 | |top_motifs=HOX{A6,A7,B6,B7}:2.56850701599;SNAI1..3:2.28290723722;ZEB1:2.14140224788;HNF1A:1.89448765008;MYOD1:1.48453577939;VSX1,2:1.43498735317;POU2F1..3:1.28271157387;bHLH_family:1.25115933962;LMO2:1.21808273848;ADNP_IRX_SIX_ZHX:1.10429417205;FOX{I1,J2}:1.06690900386;ZBTB16:1.06122270307;HNF4A_NR2F1,2:1.05269400691;ONECUT1,2:0.883918582342;POU6F1:0.821919784506;FOXN1:0.792127180071;FOXQ1:0.751053915044;TP53:0.748443295864;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.686743757509;FOXA2:0.685187625108;ELK1,4_GABP{A,B1}:0.676359867018;PBX1:0.668364869113;FOXD3:0.664110885244;BREu{core}:0.626904210746;RFX1:0.559544861133;XCPE1{core}:0.552183289151;RBPJ:0.502854871832;NFY{A,B,C}:0.49978104623;STAT5{A,B}:0.495384887037;RFX2..5_RFXANK_RFXAP:0.472728074245;NANOG:0.472287269119;YY1:0.46890766495;ZNF148:0.455006449608;NKX2-1,4:0.425120881171;TEF:0.42245403627;SOX2:0.399058209127;NR6A1:0.394086707322;HSF1,2:0.393065488366;MYB:0.367004634419;NR5A1,2:0.366538268228;EP300:0.359164539453;CDX1,2,4:0.355789266122;NKX2-3_NKX2-5:0.346682553571;TFAP2{A,C}:0.336348644349;IKZF2:0.33601973248;ATF4:0.327885954393;CUX2:0.318499306198;SOX{8,9,10}:0.316698509138;ZNF143:0.316274482987;CDC5L:0.302234663934;CRX:0.270073015735;PAX4:0.266998921973;LHX3,4:0.249122924504;AIRE:0.242149218161;T:0.238498159546;E2F1..5:0.234542495651;NKX3-2:0.229403964596;OCT4_SOX2{dimer}:0.227438528942;PAX8:0.206872243436;TFAP2B:0.200961815335;MTE{core}:0.195730841929;PITX1..3:0.193975361724;MTF1:0.173933603407;EN1,2:0.161396023765;POU5F1:0.152285640727;PRRX1,2:0.125204540647;ESRRA:0.107288141035;PDX1:0.103583507783;AHR_ARNT_ARNT2:0.102507166503;TOPORS:0.101574954491;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.090311987434;ZNF384:0.0634695616154;HIC1:0.0560117974057;FOX{D1,D2}:0.0285887243489;HLF:0.0145438367826;FOX{F1,F2,J1}:0.0081968614289;GATA6:-0.00114560891294;CEBPA,B_DDIT3:-0.00321602148782;RXRA_VDR{dimer}:-0.0196169415586;NKX3-1:-0.0205543522852;LEF1_TCF7_TCF7L1,2:-0.0229398886518;NRF1:-0.0434269511203;SP1:-0.0548365598902;IKZF1:-0.0686241203213;TFDP1:-0.0712599730246;DBP:-0.0806918721721;GTF2A1,2:-0.0899351244556;FOS_FOS{B,L1}_JUN{B,D}:-0.0973624119349;REST:-0.108365216661;ARID5B:-0.120319721332;PAX2:-0.123873320306;EVI1:-0.129645865603;HOX{A5,B5}:-0.161295093298;ZFP161:-0.168132290422;FOSL2:-0.202035844748;NKX6-1,2:-0.207195302908;ESR1:-0.214749206663;ATF5_CREB3:-0.215739561768;ZIC1..3:-0.223982177786;SOX17:-0.2248983276;STAT1,3:-0.229794390033;FOXO1,3,4:-0.232297872679;ALX1:-0.24464857159;NFE2:-0.248119101164;IRF7:-0.252180356216;TBP:-0.252793742012;FOXP1:-0.253098915557;BPTF:-0.263961454061;EBF1:-0.264559593406;GFI1:-0.27223705952;MED-1{core}:-0.288328693867;TFCP2:-0.292770218177;BACH2:-0.306454261749;MEF2{A,B,C,D}:-0.312511128912;FOXM1:-0.341698859695;UFEwm:-0.359597311838;HIF1A:-0.377420382481;NFIX:-0.380760871046;ELF1,2,4:-0.385422648096;HBP1_HMGB_SSRP1_UBTF:-0.40091823701;ATF2:-0.404459270658;TEAD1:-0.406171251703;ATF6:-0.409511889522;FOXP3:-0.414682208486;PATZ1:-0.428229259325;PAX6:-0.448939071507;NFKB1_REL_RELA:-0.450850504146;PPARG:-0.453569598511;NR3C1:-0.453773489328;ZBTB6:-0.465537787683;POU1F1:-0.495670121581;DMAP1_NCOR{1,2}_SMARC:-0.532953719859;TLX1..3_NFIC{dimer}:-0.541561273934;FOXL1:-0.547670702881;HOX{A4,D4}:-0.554334191519;KLF4:-0.556786189417;TAL1_TCF{3,4,12}:-0.574193610049;SPZ1:-0.575662353226;SPIB:-0.577491454354;AR:-0.600019496459;RREB1:-0.602672261157;SOX5:-0.604334248369;NFIL3:-0.605255331245;HAND1,2:-0.62269417018;SPI1:-0.623878884996;GTF2I:-0.63364184302;TBX4,5:-0.651250928671;JUN:-0.667151254511;ETS1,2:-0.675490163506;NR1H4:-0.683808589211;TLX2:-0.683942539004;ZNF238:-0.688158354734;IRF1,2:-0.688181213295;EGR1..3:-0.693393631529;RUNX1..3:-0.701139965603;CREB1:-0.715514960382;ZNF423:-0.716069419629;GLI1..3:-0.742732779373;MZF1:-0.754580873997;PRDM1:-0.773776935494;PAX3,7:-0.77395308465;XBP1:-0.782914489266;MAZ:-0.78484130032;NFE2L2:-0.791481843371;POU3F1..4:-0.804142260274;ALX4:-0.834274421786;RORA:-0.836377494691;MYBL2:-0.837047134579;STAT2,4,6:-0.837222722183;HMGA1,2:-0.859735491819;GFI1B:-0.86315346122;PAX1,9:-0.864144418354;HOXA9_MEIS1:-0.912339925001;MYFfamily:-0.97187269515;NHLH1,2:-0.981216371302;GATA4:-0.994966502067;SREBF1,2:-1.00001656495;GZF1:-1.03199526179;MAFB:-1.03266293662;NKX2-2,8:-1.05668021869;PAX5:-1.07479015681;HES1:-1.10432649973;TGIF1:-1.18096175574;SMAD1..7,9:-1.24353264606;GCM1,2:-1.32592053298;SRF:-1.33358653636;NANOG{mouse}:-1.35079096166;TFAP4:-1.41047895678;NFATC1..3:-1.47425258812;RXR{A,B,G}:-1.93068798396;NFE2L1:-2.00149616786;HMX1:-2.20241824073 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10612-108F9;search_select_hide=table117:FF:10612-108F9 | |||
}} | }} | ||
Latest revision as of 14:31, 3 June 2020
| Name: | gastric adenocarcinoma cell line:MKN45 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11819 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11819
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11819
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.868 |
| 10 | 10 | 0.499 |
| 100 | 100 | 0.473 |
| 101 | 101 | 0.443 |
| 102 | 102 | 0.775 |
| 103 | 103 | 0.544 |
| 104 | 104 | 0.887 |
| 105 | 105 | 0.565 |
| 106 | 106 | 0.912 |
| 107 | 107 | 0.976 |
| 108 | 108 | 0.435 |
| 109 | 109 | 0.54 |
| 11 | 11 | 0.434 |
| 110 | 110 | 0.289 |
| 111 | 111 | 0.838 |
| 112 | 112 | 0.124 |
| 113 | 113 | 0.012 |
| 114 | 114 | 0.79 |
| 115 | 115 | 0.53 |
| 116 | 116 | 0.263 |
| 117 | 117 | 0.748 |
| 118 | 118 | 0.836 |
| 119 | 119 | 0.743 |
| 12 | 12 | 0.599 |
| 120 | 120 | 0.484 |
| 121 | 121 | 0.475 |
| 122 | 122 | 0.084 |
| 123 | 123 | 0.963 |
| 124 | 124 | 0.84 |
| 125 | 125 | 0.107 |
| 126 | 126 | 0.3 |
| 127 | 127 | 0.434 |
| 128 | 128 | 0.674 |
| 129 | 129 | 0.4 |
| 13 | 13 | 0.00522 |
| 130 | 130 | 0.0608 |
| 131 | 131 | 0.158 |
| 132 | 132 | 0.349 |
| 133 | 133 | 0.00651 |
| 134 | 134 | 0.598 |
| 135 | 135 | 0.0557 |
| 136 | 136 | 0.062 |
| 137 | 137 | 0.407 |
| 138 | 138 | 0.319 |
| 139 | 139 | 0.0501 |
| 14 | 14 | 0.919 |
| 140 | 140 | 0.717 |
| 141 | 141 | 0.294 |
| 142 | 142 | 0.754 |
| 143 | 143 | 0.0452 |
| 144 | 144 | 0.334 |
| 145 | 145 | 0.413 |
| 146 | 146 | 0.747 |
| 147 | 147 | 0.891 |
| 148 | 148 | 0.633 |
| 149 | 149 | 0.531 |
| 15 | 15 | 0.944 |
| 150 | 150 | 0.831 |
| 151 | 151 | 0.927 |
| 152 | 152 | 0.568 |
| 153 | 153 | 0.996 |
| 154 | 154 | 0.743 |
| 155 | 155 | 0.767 |
| 156 | 156 | 0.665 |
| 157 | 157 | 0.222 |
| 158 | 158 | 0.506 |
| 159 | 159 | 0.545 |
| 16 | 16 | 0.663 |
| 160 | 160 | 0.58 |
| 161 | 161 | 0.978 |
| 162 | 162 | 0.649 |
| 163 | 163 | 0.801 |
| 164 | 164 | 0.599 |
| 165 | 165 | 0.448 |
| 166 | 166 | 0.643 |
| 167 | 167 | 0.775 |
| 168 | 168 | 0.682 |
| 169 | 169 | 0.521 |
| 17 | 17 | 0.735 |
| 18 | 18 | 0.193 |
| 19 | 19 | 0.0587 |
| 2 | 2 | 0.375 |
| 20 | 20 | 0.238 |
| 21 | 21 | 0.649 |
| 22 | 22 | 0.478 |
| 23 | 23 | 0.0592 |
| 24 | 24 | 0.456 |
| 25 | 25 | 0.828 |
| 26 | 26 | 0.106 |
| 27 | 27 | 0.856 |
| 28 | 28 | 0.784 |
| 29 | 29 | 0.482 |
| 3 | 3 | 0.305 |
| 30 | 30 | 0.84 |
| 31 | 31 | 0.544 |
| 32 | 32 | 0.0312 |
| 33 | 33 | 0.593 |
| 34 | 34 | 0.585 |
| 35 | 35 | 0.53 |
| 36 | 36 | 0.424 |
| 37 | 37 | 0.648 |
| 38 | 38 | 0.995 |
| 39 | 39 | 0.658 |
| 4 | 4 | 0.431 |
| 40 | 40 | 0.532 |
| 41 | 41 | 0.00767 |
| 42 | 42 | 0.934 |
| 43 | 43 | 0.16 |
| 44 | 44 | 0.795 |
| 45 | 45 | 0.978 |
| 46 | 46 | 0.931 |
| 47 | 47 | 0.785 |
| 48 | 48 | 0.853 |
| 49 | 49 | 0.299 |
| 5 | 5 | 0.269 |
| 50 | 50 | 0.416 |
| 51 | 51 | 0.472 |
| 52 | 52 | 0.54 |
| 53 | 53 | 0.386 |
| 54 | 54 | 0.393 |
| 55 | 55 | 0.621 |
| 56 | 56 | 0.881 |
| 57 | 57 | 0.903 |
| 58 | 58 | 0.777 |
| 59 | 59 | 0.304 |
| 6 | 6 | 0.575 |
| 60 | 60 | 0.742 |
| 61 | 61 | 0.263 |
| 62 | 62 | 0.226 |
| 63 | 63 | 0.522 |
| 64 | 64 | 0.827 |
| 65 | 65 | 0.429 |
| 66 | 66 | 0.0397 |
| 67 | 67 | 0.514 |
| 68 | 68 | 0.0536 |
| 69 | 69 | 0.513 |
| 7 | 7 | 0.464 |
| 70 | 70 | 0.487 |
| 71 | 71 | 0.662 |
| 72 | 72 | 0.402 |
| 73 | 73 | 0.419 |
| 74 | 74 | 0.184 |
| 75 | 75 | 0.359 |
| 76 | 76 | 0.498 |
| 77 | 77 | 0.367 |
| 78 | 78 | 0.321 |
| 79 | 79 | 0.348 |
| 8 | 8 | 0.896 |
| 80 | 80 | 0.239 |
| 81 | 81 | 0.209 |
| 82 | 82 | 0.0767 |
| 83 | 83 | 0.595 |
| 84 | 84 | 0.778 |
| 85 | 85 | 0.0766 |
| 86 | 86 | 0.49 |
| 87 | 87 | 0.214 |
| 88 | 88 | 0.869 |
| 89 | 89 | 0.145 |
| 9 | 9 | 0.054 |
| 90 | 90 | 0.666 |
| 91 | 91 | 0.0843 |
| 92 | 92 | 0.491 |
| 93 | 93 | 0.771 |
| 94 | 94 | 0.0762 |
| 95 | 95 | 0.199 |
| 96 | 96 | 0.0568 |
| 97 | 97 | 0.85 |
| 98 | 98 | 0.763 |
| 99 | 99 | 0.59 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11819
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101225 MKN-45 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100787 (gastric cancer cell line sample)
0102380 (gastric adenocarcinoma cell line sample)
0101225 (MKN-45 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
