FF:10686-109F2: Difference between revisions

Latest revision as of 14:32, 3 June 2020

Name:	bone marrow stromal cell line:StromaNKtert
Species:	Human (Homo sapiens)
Library ID:	CNhs11931
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	unknown
age	NA
cell type	stromal cell
cell line	StromaNKtert
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005109

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11931		CAGE		DRX007836		DRR008708

Accession ID Hg19

Library id		BAM		CTSS
CNhs11931		DRZ000133		DRZ001518

Accession ID Hg38

Library id		BAM		CTSS
CNhs11931		DRZ011483		DRZ012868

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.115
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.328
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.325
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00347
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.113
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.131
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0133
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.16
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0563
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.256
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.465
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.298
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11931

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.224
MA0003.1	MA0003.1	0.167
MA0004.1	MA0004.1	0.306
MA0006.1	MA0006.1	0.593
MA0007.1	MA0007.1	0.234
MA0009.1	MA0009.1	0.676
MA0014.1	MA0014.1	0.971
MA0017.1	MA0017.1	0.86
MA0018.2	MA0018.2	0.0271
MA0019.1	MA0019.1	0.432
MA0024.1	MA0024.1	0.804
MA0025.1	MA0025.1	0.0127
MA0027.1	MA0027.1	0.497
MA0028.1	MA0028.1	6.17158e-6
MA0029.1	MA0029.1	0.142
MA0030.1	MA0030.1	0.496
MA0031.1	MA0031.1	0.812
MA0035.2	MA0035.2	0.127
MA0038.1	MA0038.1	0.922
MA0039.2	MA0039.2	0.031
MA0040.1	MA0040.1	0.617
MA0041.1	MA0041.1	0.271
MA0042.1	MA0042.1	0.0555
MA0043.1	MA0043.1	0.00426
MA0046.1	MA0046.1	0.766
MA0047.2	MA0047.2	0.386
MA0048.1	MA0048.1	0.442
MA0050.1	MA0050.1	0.8
MA0051.1	MA0051.1	0.798
MA0052.1	MA0052.1	0.447
MA0055.1	MA0055.1	0.533
MA0057.1	MA0057.1	0.892
MA0058.1	MA0058.1	0.209
MA0059.1	MA0059.1	0.524
MA0060.1	MA0060.1	0.503
MA0061.1	MA0061.1	0.531
MA0062.2	MA0062.2	2.58542e-12
MA0065.2	MA0065.2	0.503
MA0066.1	MA0066.1	0.296
MA0067.1	MA0067.1	0.185
MA0068.1	MA0068.1	0.849
MA0069.1	MA0069.1	0.534
MA0070.1	MA0070.1	0.369
MA0071.1	MA0071.1	0.696
MA0072.1	MA0072.1	0.665
MA0073.1	MA0073.1	0.887
MA0074.1	MA0074.1	0.208
MA0076.1	MA0076.1	3.64633e-7
MA0077.1	MA0077.1	0.414
MA0078.1	MA0078.1	0.538
MA0079.2	MA0079.2	0.445
MA0080.2	MA0080.2	7.65732e-4
MA0081.1	MA0081.1	0.252
MA0083.1	MA0083.1	9.12456e-5
MA0084.1	MA0084.1	0.0858
MA0087.1	MA0087.1	0.522
MA0088.1	MA0088.1	0.714
MA0090.1	MA0090.1	2.11278e-9
MA0091.1	MA0091.1	0.453
MA0092.1	MA0092.1	0.0678
MA0093.1	MA0093.1	0.255
MA0099.2	MA0099.2	5.30188e-9
MA0100.1	MA0100.1	0.976
MA0101.1	MA0101.1	0.863
MA0102.2	MA0102.2	0.309
MA0103.1	MA0103.1	0.00659
MA0104.2	MA0104.2	0.0536
MA0105.1	MA0105.1	0.62
MA0106.1	MA0106.1	0.368
MA0107.1	MA0107.1	0.811
MA0108.2	MA0108.2	0.0876
MA0111.1	MA0111.1	0.715
MA0112.2	MA0112.2	0.153
MA0113.1	MA0113.1	0.00536
MA0114.1	MA0114.1	0.667
MA0115.1	MA0115.1	0.972
MA0116.1	MA0116.1	0.804
MA0117.1	MA0117.1	0.493
MA0119.1	MA0119.1	0.00145
MA0122.1	MA0122.1	0.897
MA0124.1	MA0124.1	0.601
MA0125.1	MA0125.1	0.911
MA0131.1	MA0131.1	0.258
MA0135.1	MA0135.1	0.243
MA0136.1	MA0136.1	0.00462
MA0137.2	MA0137.2	0.175
MA0138.2	MA0138.2	0.24
MA0139.1	MA0139.1	0.371
MA0140.1	MA0140.1	0.418
MA0141.1	MA0141.1	0.697
MA0142.1	MA0142.1	0.426
MA0143.1	MA0143.1	0.598
MA0144.1	MA0144.1	0.977
MA0145.1	MA0145.1	0.0261
MA0146.1	MA0146.1	0.115
MA0147.1	MA0147.1	0.21
MA0148.1	MA0148.1	0.0512
MA0149.1	MA0149.1	0.559
MA0150.1	MA0150.1	0.0162
MA0152.1	MA0152.1	0.0408
MA0153.1	MA0153.1	0.851
MA0154.1	MA0154.1	0.307
MA0155.1	MA0155.1	0.374
MA0156.1	MA0156.1	0.0227
MA0157.1	MA0157.1	0.217
MA0159.1	MA0159.1	0.957
MA0160.1	MA0160.1	0.978
MA0162.1	MA0162.1	0.611
MA0163.1	MA0163.1	0.666
MA0164.1	MA0164.1	0.714
MA0258.1	MA0258.1	0.333
MA0259.1	MA0259.1	0.293

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11931

Novel motif	Logo	P-value
1	1	0.0481
10	10	0.387
100	100	0.206
101	101	0.839
102	102	0.0272
103	103	0.382
104	104	0.416
105	105	0.308
106	106	0.322
107	107	0.0028
108	108	0.957
109	109	0.927
11	11	0.482
110	110	0.871
111	111	0.193
112	112	0.557
113	113	0.327
114	114	0.567
115	115	0.163
116	116	0.692
117	117	0.479
118	118	0.104
119	119	0.325
12	12	0.797
120	120	0.809
121	121	0.963
122	122	0.668
123	123	0.623
124	124	0.724
125	125	0.764
126	126	0.83
127	127	0.634
128	128	0.585
129	129	0.186
13	13	0.915
130	130	0.0635
131	131	0.622
132	132	0.306
133	133	0.998
134	134	0.192
135	135	0.743
136	136	0.132
137	137	0.521
138	138	0.845
139	139	0.337
14	14	0.227
140	140	0.135
141	141	0.429
142	142	0.648
143	143	0.248
144	144	0.602
145	145	0.0669
146	146	0.189
147	147	0.582
148	148	0.234
149	149	0.484
15	15	0.213
150	150	0.11
151	151	0.491
152	152	0.306
153	153	0.401
154	154	0.849
155	155	0.116
156	156	0.608
157	157	0.221
158	158	0.568
159	159	0.644
16	16	0.509
160	160	0.938
161	161	0.641
162	162	0.816
163	163	0.966
164	164	0.0822
165	165	0.86
166	166	0.436
167	167	0.901
168	168	0.415
169	169	0.434
17	17	0.163
18	18	0.262
19	19	0.111
2	2	0.738
20	20	0.929
21	21	0.403
22	22	0.431
23	23	0.0101
24	24	0.44
25	25	0.528
26	26	0.286
27	27	0.887
28	28	0.723
29	29	0.197
3	3	0.654
30	30	0.989
31	31	0.508
32	32	0.0604
33	33	0.764
34	34	0.596
35	35	0.813
36	36	0.976
37	37	0.799
38	38	0.464
39	39	0.499
4	4	0.883
40	40	0.352
41	41	0.45
42	42	0.495
43	43	0.219
44	44	0.207
45	45	0.523
46	46	0.149
47	47	0.87
48	48	0.995
49	49	0.139
5	5	0.257
50	50	0.665
51	51	0.68
52	52	0.832
53	53	0.926
54	54	0.124
55	55	0.0399
56	56	0.619
57	57	0.108
58	58	0.76
59	59	0.164
6	6	0.94
60	60	0.643
61	61	0.578
62	62	0.45
63	63	0.451
64	64	0.63
65	65	0.201
66	66	0.117
67	67	0.396
68	68	0.812
69	69	0.979
7	7	0.865
70	70	0.627
71	71	0.539
72	72	0.554
73	73	0.738
74	74	0.124
75	75	0.207
76	76	0.166
77	77	0.182
78	78	0.727
79	79	0.968
8	8	0.175
80	80	0.137
81	81	0.362
82	82	0.642
83	83	0.088
84	84	0.362
85	85	0.342
86	86	0.791
87	87	0.902
88	88	0.618
89	89	0.866
9	9	0.649
90	90	0.369
91	91	0.663
92	92	0.379
93	93	0.453
94	94	0.0727
95	95	0.0537
96	96	0.0771
97	97	0.0439
98	98	0.697
99	99	0.182

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11931

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103296 bone marrow stromal cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0007195 (stroma of bone marrow)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103296 (bone marrow stromal cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007731
+|DRA_sample_Accession=CAGE@SAMD00005109
-|accession_numbers=CAGE;DRX007836;DRR008708;DRZ000133;DRZ001518
+|accession_numbers=CAGE;DRX007836;DRR008708;DRZ000133;DRZ001518;DRZ011483;DRZ012868
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0007195,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:158526917..158526932,-!p1@EBF1!1.68!112.25!EBF1;;chr1:170632959..170632987,+!p4@PRRX1!1.68!51.12!PRRX1;;chrX:66763856..66763896,+!p1@AR!1.67!64.46!AR;;chr1:170633058..170633084,+!p5@PRRX1!1.61!40.01!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!1.59!37.79!LHX9;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.57!FOXC2;;chr12:54380404..54380433,+!p3@HOXC10!1.46!27.78!HOXC10;;chr1:170633348..170633399,+!p2@PRRX1!1.41!33.34!PRRX1;;chr5:158526459..158526481,-!p2@EBF1!1.39!31.12!EBF1;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.45!PRRX1;;chr2:85981073..85981091,+!p5@ATOH8!1.34!21.12!ATOH8;;chr8:49833978..49833996,-!p1@SNAI2!1.33!408.98!SNAI2;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.34!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.30!18.89!SIX2;;chrX:66763914..66763933,+!p3@AR!1.30!18.89!AR;;chr10:63809013..63809041,+!p3@ARID5B!1.27!96.69!ARID5B;;chr2:85981107..85981120,+!p3@ATOH8!1.27!17.78!ATOH8;;chr12:66218598..66218645,+!p2@HMGA2!1.23!73.35!HMGA2;;chrX:66764343..66764362,+!p4@AR!1.22!15.56!AR;;chr8:49833948..49833973,-!p2@SNAI2!1.21!95.58!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.67!ZFP106;;chr12:54402745..54402788,+!p1@HOXC8!1.19!14.45!HOXC8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.19!14.45!HOXC5;;chr1:23885981..23886002,-!p1@ID3!1.17!2342.77!ID3;;chr17:46687959..46688007,-!p2@HOXB7!1.17!18.89!HOXB7;;chr2:19558373..19558392,-!p1@OSR1!1.16!36.68!OSR1;;chrX:66763815..66763854,+!p2@AR!1.16!17.78!AR;;chr7:15726243..15726293,-!p2@MEOX2!1.16!13.34!MEOX2;;chr15:67391010..67391046,+!p13@SMAD3!1.16!13.34!SMAD3;;chr12:52445218..52445237,+!p1@NR4A1!1.12!154.48!NR4A1;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!62.24!CREB3L1;;chr20:39946361..39946379,-!p2@ZHX3!1.10!34.45!ZHX3;;chr11:65686802..65686818,+!p6@DRAP1!1.10!20.00!DRAP1;;chr2:200323414..200323455,-!p1@SATB2!1.09!24.45!SATB2;;chr2:200322654..200322707,-!p2@SATB2!1.09!16.67!SATB2;;chr10:63809106..63809127,+!p1@ARID5B!1.08!147.81!ARID5B;;chr16:86600458..86600461,+!p3@FOXC2!1.08!11.11!FOXC2;;chr3:114343768..114343822,-!p1@ZBTB20!1.07!47.79!ZBTB20;;chr11:65686732..65686756,+!p2@DRAP1!1.07!45.57!DRAP1;;chr2:157189180..157189290,-!p1@NR4A2!1.04!52.23!NR4A2;;chr10:131762504..131762555,-!p1@EBF3!1.04!10.00!EBF3;;chr16:86600870..86600921,+!p2@FOXC2!1.04!10.00!FOXC2;;chr3:169381420..169381535,-!p1@MECOM!1.02!11.11!MECOM;;chr12:77459306..77459365,-!p1@E2F7!1.00!115.58!E2F7;;chr10:63809134..63809145,+!p6@ARID5B!1.00!21.12!ARID5B;;chr8:60031619..60031676,-!p1@TOX!1.00!20.00!TOX;;chr17:46687935..46687950,-!p3@HOXB7!1.00!8.89!HOXB7;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.89!KDM5D;;chr1:119530493..119530572,-!p1@TBX15!1.00!8.89!TBX15;;chr8:67525443..67525459,-!p2@MYBL1!0.99!13.34!MYBL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.98!14.45!TFAP2A;;chr3:157823517..157823562,-!p1@SHOX2!0.97!8.89!SHOX2;;chr19:13134457..13134462,+!p5@NFIX!0.95!14.45!NFIX;;chr6:1389789..1389821,+!p1@FOXF2!0.95!11.11!FOXF2;;chr7:15726296..15726315,-!p1@MEOX2!0.94!7.78!MEOX2;;chr5:321810..321877,+!p1@AHRR!0.93!24.45!AHRR;;chr7:137686763..137686784,-!p5@CREB3L2!0.93!13.34!CREB3L2;;chr2:85980951..85981004,+!p1@ATOH8!0.92!12.23!ATOH8;;chr16:73093174..73093209,-!p3@ZFHX3!0.92!10.00!ZFHX3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.78!GLIS1;;chr3:114343826..114343869,-!p4@ZBTB20!0.90!14.45!ZBTB20;;chr17:38256799..38256815,-!p3@NR1D1!0.88!12.23!NR1D1;;chr1:170633100..170633112,+!p19@PRRX1!0.88!6.67!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!0.88!6.67!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!0.88!6.67!EBF2;;chr11:65687362..65687436,+!p3@DRAP1!0.87!31.12!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.87!16.67!TWIST1;;chr5:137804405..137804444,+!p3@EGR1!0.87!7.78!EGR1;;chr1:61547894..61547968,+!p2@NFIA!0.86!18.89!NFIA;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.78!TBX18;;chr12:66218836..66218888,+!p1@HMGA2!0.85!61.13!HMGA2;;chr11:65667846..65667868,-!p1@FOSL1!0.84!166.71!FOSL1;;chr11:65667884..65667895,-!p2@FOSL1!0.84!24.45!FOSL1;;chr3:107244229..107244254,+!p3@BBX!0.84!10.00!BBX;;chr11:65687222..65687240,+!p7@DRAP1!0.84!7.78!DRAP1;;chr2:71127699..71127744,+!p1@VAX2!0.82!12.23!VAX2;;chr2:45236579..45236596,-!p2@SIX2!0.82!5.56!SIX2;;chr2:85981027..85981047,+!p8@ATOH8!0.82!5.56!ATOH8;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.56!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.82!5.56!HOXC5;;chr19:54058073..54058088,+!p1@ZNF331!0.82!5.56!ZNF331;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.23!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!0.81!15.56!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.80!573.47!EPAS1;;chr7:150946015..150946070,-!p3@SMARCD3!0.80!12.23!SMARCD3;;chr8:60031682..60031710,-!p2@TOX!0.80!8.89!TOX;;chr12:80085061..80085119,-!p6@PAWR!0.80!8.89!PAWR;;chr3:52001448..52001478,-!p2@PCBP4!0.79!78.91!PCBP4;;chr8:77593474..77593612,+!p1@ZFHX4!0.79!23.34!ZFHX4;;chr6:45390025..45390076,+!p2@RUNX2!0.79!13.34!RUNX2;;chr9:14314522..14314556,-!p3@NFIB!0.77!12.23!NFIB;;chr6:45390002..45390023,+!p6@RUNX2!0.77!8.89!RUNX2;;chr19:45971246..45971265,+!p1@FOSB!0.76!98.91!FOSB;;chr12:2986275..2986363,-!p1@FOXM1!0.76!52.23!FOXM1;;chr3:141087339..141087387,+!p2@ZBTB38!0.75!52.23!ZBTB38;;chr1:158979792..158979814,+!p2@IFI16!0.75!48.90!IFI16;;chr3:141087393..141087426,+!p3@ZBTB38!0.75!20.00!ZBTB38;;chr11:120107344..120107351,+!p1@POU2F3!0.74!5.56!POU2F3;;chr12:54394416..54394467,+!p5@HOXC9!0.74!4.45!HOXC9;;chr12:54402729..54402743,+!p3@HOXC8!0.74!4.45!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.74!4.45!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.74!4.45!SMAD9;;chr14:74256787..74256858,-!p6@C14orf43!0.74!4.45!C14orf43;;chr4:111558135..111558198,-!p2@PITX2!0.74!4.45!PITX2;;chr5:158526756..158526797,-!p3@EBF1!0.74!4.45!EBF1;;chr7:150945865..150945896,-!p4@SMARCD3!0.74!4.45!SMARCD3;;chr7:27205106..27205134,-!p2@HOXA9!0.74!4.45!HOXA9;;chr8:77593448..77593471,+!p2@ZFHX4!0.74!4.45!ZFHX4;;chr16:54964899..54964914,+!p2@IRX5!0.74!4.45!IRX5;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.45!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.74!4.45!KLF17;;chr4:2263809..2263854,-!p1@MXD4!0.73!188.93!MXD4;;chr19:22235279..22235301,+!p1@ZNF257!0.73!8.89!ZNF257;;chr19:13134772..13134822,+!p2@NFIX!0.73!6.67!NFIX;;chr14:62162285..62162296,+!p3@HIF1A!0.72!24.45!HIF1A;;chr3:185826764..185826803,-!p2@ETV5!0.72!17.78!ETV5;;chr21:36421535..36421610,-!p2@RUNX1!0.72!16.67!RUNX1;;chr7:137686552..137686564,-!p9@CREB3L2!0.72!6.67!CREB3L2;;chr1:61548225..61548299,+!p1@NFIA!0.71!61.13!NFIA;;chr3:178789522..178789564,-!p2@ZMAT3!0.71!34.45!ZMAT3;;chr12:27485785..27485816,+!p1@ARNTL2!0.71!32.23!ARNTL2;;chr1:158985493..158985535,+!p4@IFI16!0.71!6.67!IFI16;;chr8:103667935..103667960,-!p1@KLF10!0.70!205.60!KLF10;;chr7:137686791..137686821,-!p1@CREB3L2!0.70!132.25!CREB3L2;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.56!TEAD1;;chr6:144329384..144329405,-!p1@PLAGL1!0.69!52.23!PLAGL1;;chr12:124873852..124873881,-!p3@NCOR2!0.69!26.67!NCOR2;;chr2:46524506..46524514,+!p5@EPAS1!0.69!7.78!EPAS1;;chr17:38256822..38256851,-!p1@NR1D1!0.68!34.45!NR1D1;;chr5:139487608..139487663,+!p3@PURA!0.68!8.89!PURA;;chr10:63809077..63809089,+!p5@ARID5B!0.68!8.89!ARID5B;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.67!MECOM;;chr17:42297226..42297246,-!p14@UBTF!0.67!5.56!UBTF;;chr11:65686776..65686787,+!p9@DRAP1!0.67!4.45!DRAP1;;chr1:151032860..151032918,+!p1@MLLT11!0.66!48.90!MLLT11;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.89!FOXD1;;chr20:39946279..39946356,-!p1@ZHX3!0.65!63.35!ZHX3;;chr12:2986206..2986258,-!p2@FOXM1!0.65!24.45!FOXM1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.65!16.67!LRRFIP2;;chr1:158979872..158979898,+!p3@IFI16!0.65!12.23!IFI16;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.89!MYBL1;;chr1:221052700..221052730,+!p5@HLX!0.65!5.56!HLX;;chr14:62162258..62162269,+!p2@HIF1A!0.64!37.79!HIF1A;;chr11:65687158..65687216,+!p4@DRAP1!0.64!22.23!DRAP1;;chrX:83757450..83757485,-!p1@HDX!0.64!16.67!HDX;;chr19:31840130..31840160,-!p2@TSHZ3!0.64!5.56!TSHZ3;;chr12:66218443..66218461,+!p8@HMGA2!0.64!4.45!HMGA2;;chr8:60031809..60031835,-!p4@TOX!0.64!4.45!TOX;;chr5:158526709..158526741,-!p7@EBF1!0.64!3.33!EBF1;;chr8:77596014..77596033,+!p6@ZFHX4!0.64!3.33!ZFHX4;;chr9:115819058..115819082,-!p2@ZFP37!0.64!3.33!ZFP37;;chrX:128657363..128657372,-!p3@SMARCA1!0.64!3.33!SMARCA1;;chr9:16727978..16728010,-!p6@BNC2!0.64!3.33!BNC2;;chr9:16705069..16705086,-!p3@BNC2!0.64!3.33!BNC2;;chrY:21906761..21906810,-!p2@KDM5D!0.64!3.33!KDM5D;;chr9:73028786..73028797,-!p11@KLF9!0.64!3.33!KLF9;;chr9:4299638..4299651,-!p8@GLIS3!0.64!3.33!GLIS3;;chr22:46567171..46567203,+!p6@PPARA!0.64!3.33!PPARA;;chr2:176994408..176994492,+!p1@HOXD8!0.64!3.33!HOXD8;;chr2:185463521..185463557,+!p3@ZNF804A!0.64!3.33!ZNF804A;;chr2:19558327..19558334,-!p2@OSR1!0.64!3.33!OSR1;;chr2:214014959..214015006,-!p4@IKZF2!0.64!3.33!IKZF2;;chr2:66662396..66662407,+!p4@MEIS1!0.64!3.33!MEIS1;;chr2:85981008..85981025,+!p7@ATOH8!0.64!3.33!ATOH8;;chr2:96012397..96012417,+!p3@KCNIP3!0.64!3.33!KCNIP3;;chr3:69811882..69811898,+!p6@MITF!0.64!3.33!MITF;;chr4:299227..299272,-!p1@ZNF732!0.64!3.33!ZNF732;;chr19:50542543..50542548,+!p2@ZNF473!0.64!3.33!ZNF473;;chr19:9609247..9609262,-!p2@ZNF560!0.64!3.33!ZNF560;;chr1:170633245..170633256,+!p14@PRRX1!0.64!3.33!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.64!3.33!PRRX1;;chr1:214161328..214161348,+!p2@PROX1!0.64!3.33!PROX1;;chr12:10870927..10870966,-!p5@CSDA!0.64!3.33!CSDA;;chr12:54378923..54378966,+!p1@HOXC10!0.64!3.33!HOXC10;;chr12:54379477..54379498,+!p5@HOXC5!0.64!3.33!HOXC5;;chr12:66218923..66218934,+!p14@HMGA2!0.64!3.33!HMGA2;;chr12:80085120..80085156,-!p14@PAWR!0.64!3.33!PAWR;;chr13:37494248..37494260,-!p3@SMAD9!0.64!3.33!SMAD9;;chr14:61190359..61190385,-!p4@SIX4!0.64!3.33!SIX4;;chr17:46682321..46682362,-!p1@HOXB6!0.64!3.33!HOXB6;;chr17:48072574..48072597,-!p1@DLX3!0.64!3.33!DLX3;;chr12:124873357..124873401,-!p1@NCOR2!0.63!44.45!NCOR2;;chr3:71179699..71179744,-!p2@FOXP1!0.63!28.90!FOXP1;;chr2:28616358..28616380,+!p3@FOSL2!0.63!20.00!FOSL2;;chr12:54019757..54019804,-!p2@ATF7!0.63!14.45!ATF7;;chr12:27485762..27485776,+!p3@ARNTL2!0.63!10.00!ARNTL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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10686-109F2
 |is_a=EFO:0002091;;FF:0000210;;FF:0103296
 |is_obsolete=
 |library_id=CNhs11931
-|library_id_phase_based=1:CNhs11931
+|library_id_phase_based=2:CNhs11931
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10686
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10686
 |name=bone marrow stromal cell line:StromaNKtert
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11931,LSID835,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10686-109F2;search_select_hide=table117:FF:10686-109F2
 }}

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FF:10686-109F2: Difference between revisions

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Latest revision as of 14:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0