FF:10689-109F5: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	mixed mullerian tumor cell line:HTMMT
Species:	Human (Homo sapiens)
Library ID:	CNhs11944
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	endometrium
dev stage	NA
sex	female
age	66
cell type	unclassifiable
cell line	HTMMT
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004901

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11944		CAGE		DRX007952		DRR008824

Accession ID Hg19

Library id		BAM		CTSS
CNhs11944		DRZ000249		DRZ001634

Accession ID Hg38

Library id		BAM		CTSS
CNhs11944		DRZ011599		DRZ012984

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.256
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.215
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.123
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0337
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0387
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.472
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.964
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.995
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.123
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0338
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.123
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.123
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.188
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.518
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.123
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.219
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.518
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.559
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.123
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.297
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11944

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.832
MA0003.1	MA0003.1	0.516
MA0004.1	MA0004.1	0.34
MA0006.1	MA0006.1	0.671
MA0007.1	MA0007.1	0.265
MA0009.1	MA0009.1	0.645
MA0014.1	MA0014.1	0.726
MA0017.1	MA0017.1	0.237
MA0018.2	MA0018.2	0.00194
MA0019.1	MA0019.1	0.313
MA0024.1	MA0024.1	0.0824
MA0025.1	MA0025.1	0.0187
MA0027.1	MA0027.1	0.261
MA0028.1	MA0028.1	0.473
MA0029.1	MA0029.1	0.282
MA0030.1	MA0030.1	0.00137
MA0031.1	MA0031.1	0.00837
MA0035.2	MA0035.2	0.0135
MA0038.1	MA0038.1	0.214
MA0039.2	MA0039.2	0.0155
MA0040.1	MA0040.1	0.0259
MA0041.1	MA0041.1	0.0584
MA0042.1	MA0042.1	0.349
MA0043.1	MA0043.1	8.97837e-4
MA0046.1	MA0046.1	0.00285
MA0047.2	MA0047.2	0.0229
MA0048.1	MA0048.1	0.0124
MA0050.1	MA0050.1	0.0522
MA0051.1	MA0051.1	0.0434
MA0052.1	MA0052.1	4.40443e-7
MA0055.1	MA0055.1	0.0183
MA0057.1	MA0057.1	0.764
MA0058.1	MA0058.1	0.7
MA0059.1	MA0059.1	0.0494
MA0060.1	MA0060.1	0.835
MA0061.1	MA0061.1	0.46
MA0062.2	MA0062.2	0.118
MA0065.2	MA0065.2	0.0741
MA0066.1	MA0066.1	0.28
MA0067.1	MA0067.1	0.503
MA0068.1	MA0068.1	0.806
MA0069.1	MA0069.1	0.415
MA0070.1	MA0070.1	0.815
MA0071.1	MA0071.1	0.22
MA0072.1	MA0072.1	0.88
MA0073.1	MA0073.1	0.841
MA0074.1	MA0074.1	0.269
MA0076.1	MA0076.1	0.508
MA0077.1	MA0077.1	0.922
MA0078.1	MA0078.1	0.551
MA0079.2	MA0079.2	0.00247
MA0080.2	MA0080.2	2.38249e-11
MA0081.1	MA0081.1	0.0118
MA0083.1	MA0083.1	0.614
MA0084.1	MA0084.1	0.863
MA0087.1	MA0087.1	0.113
MA0088.1	MA0088.1	0.391
MA0090.1	MA0090.1	0.969
MA0091.1	MA0091.1	0.718
MA0092.1	MA0092.1	0.703
MA0093.1	MA0093.1	0.406
MA0099.2	MA0099.2	1.81361e-9
MA0100.1	MA0100.1	0.934
MA0101.1	MA0101.1	0.119
MA0102.2	MA0102.2	0.00289
MA0103.1	MA0103.1	0.309
MA0104.2	MA0104.2	0.386
MA0105.1	MA0105.1	0.06
MA0106.1	MA0106.1	0.925
MA0107.1	MA0107.1	0.0316
MA0108.2	MA0108.2	4.69578e-8
MA0111.1	MA0111.1	0.399
MA0112.2	MA0112.2	0.0196
MA0113.1	MA0113.1	0.624
MA0114.1	MA0114.1	0.862
MA0115.1	MA0115.1	0.418
MA0116.1	MA0116.1	0.112
MA0117.1	MA0117.1	0.487
MA0119.1	MA0119.1	0.0303
MA0122.1	MA0122.1	0.391
MA0124.1	MA0124.1	0.0203
MA0125.1	MA0125.1	0.413
MA0131.1	MA0131.1	0.91
MA0135.1	MA0135.1	0.0188
MA0136.1	MA0136.1	1.17171e-11
MA0137.2	MA0137.2	0.0953
MA0138.2	MA0138.2	0.876
MA0139.1	MA0139.1	0.318
MA0140.1	MA0140.1	0.0306
MA0141.1	MA0141.1	0.169
MA0142.1	MA0142.1	0.478
MA0143.1	MA0143.1	0.987
MA0144.1	MA0144.1	0.159
MA0145.1	MA0145.1	0.139
MA0146.1	MA0146.1	0.384
MA0147.1	MA0147.1	0.186
MA0148.1	MA0148.1	0.134
MA0149.1	MA0149.1	0.115
MA0150.1	MA0150.1	0.0469
MA0152.1	MA0152.1	0.208
MA0153.1	MA0153.1	0.543
MA0154.1	MA0154.1	0.41
MA0155.1	MA0155.1	0.85
MA0156.1	MA0156.1	6.02672e-9
MA0157.1	MA0157.1	0.222
MA0159.1	MA0159.1	0.0487
MA0160.1	MA0160.1	0.485
MA0162.1	MA0162.1	0.153
MA0163.1	MA0163.1	0.00161
MA0164.1	MA0164.1	0.852
MA0258.1	MA0258.1	0.0027
MA0259.1	MA0259.1	0.165

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11944

Novel motif	Logo	P-value
1	1	0.0625
10	10	0.0277
100	100	0.0176
101	101	0.784
102	102	0.75
103	103	0.291
104	104	0.998
105	105	0.00869
106	106	0.746
107	107	0.0568
108	108	0.2
109	109	0.242
11	11	0.266
110	110	0.176
111	111	0.00854
112	112	0.98
113	113	0.0078
114	114	0.0977
115	115	0.0092
116	116	0.146
117	117	0.0314
118	118	0.367
119	119	0.327
12	12	0.201
120	120	0.512
121	121	0.324
122	122	0.142
123	123	0.141
124	124	0.453
125	125	0.298
126	126	0.718
127	127	0.929
128	128	0.725
129	129	0.666
13	13	0.0235
130	130	0.0731
131	131	0.643
132	132	0.757
133	133	0.0674
134	134	0.165
135	135	0.0225
136	136	0.0756
137	137	0.188
138	138	0.939
139	139	0.991
14	14	0.407
140	140	0.619
141	141	0.18
142	142	0.705
143	143	0.514
144	144	0.927
145	145	0.624
146	146	0.742
147	147	0.131
148	148	0.706
149	149	0.688
15	15	0.247
150	150	0.0569
151	151	0.978
152	152	0.258
153	153	0.38
154	154	0.689
155	155	0.617
156	156	0.858
157	157	0.419
158	158	0.0722
159	159	0.225
16	16	0.0792
160	160	0.743
161	161	0.644
162	162	0.0711
163	163	0.71
164	164	0.0705
165	165	0.712
166	166	0.349
167	167	0.0359
168	168	0.121
169	169	0.821
17	17	0.877
18	18	0.128
19	19	0.135
2	2	0.226
20	20	0.144
21	21	0.144
22	22	0.455
23	23	0.644
24	24	0.946
25	25	0.588
26	26	0.0923
27	27	0.482
28	28	0.85
29	29	0.0645
3	3	0.445
30	30	0.209
31	31	0.531
32	32	6.14773e-7
33	33	0.082
34	34	0.45
35	35	0.121
36	36	0.265
37	37	0.0514
38	38	0.953
39	39	0.728
4	4	0.755
40	40	0.199
41	41	0.242
42	42	0.942
43	43	0.401
44	44	0.0976
45	45	0.142
46	46	0.242
47	47	0.102
48	48	0.215
49	49	0.584
5	5	0.944
50	50	0.862
51	51	0.8
52	52	0.57
53	53	0.314
54	54	0.76
55	55	0.278
56	56	0.596
57	57	0.223
58	58	0.469
59	59	0.665
6	6	0.437
60	60	0.749
61	61	0.255
62	62	0.886
63	63	0.281
64	64	0.217
65	65	0.771
66	66	0.569
67	67	0.224
68	68	0.806
69	69	0.365
7	7	0.971
70	70	0.37
71	71	0.0433
72	72	0.81
73	73	0.363
74	74	0.549
75	75	0.024
76	76	0.294
77	77	0.457
78	78	0.52
79	79	0.0979
8	8	0.0874
80	80	0.00905
81	81	0.299
82	82	0.845
83	83	0.858
84	84	0.817
85	85	0.709
86	86	0.775
87	87	0.0127
88	88	0.899
89	89	0.796
9	9	0.138
90	90	0.125
91	91	0.95
92	92	0.927
93	93	0.785
94	94	0.665
95	95	0.283
96	96	0.552
97	97	0.874
98	98	0.965
99	99	0.28

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11944

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:4236 carcinosarcoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0003134 female reproductive organ

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
154 (mixed cell type cancer)
4236 (carcinosarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0006598,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00004901
+|accession_numbers=CAGE;DRX007952;DRR008824;DRZ000249;DRZ001634;DRZ011599;DRZ012984
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:154,DOID:4236
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.61!48.16!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.51!51.11!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.41!24.90!HOXC5;;chr11:31832658..31832681,-!p1@PAX6!1.31!19.33!PAX6;;chr6:10412392..10412409,-!p4@TFAP2A!1.29!20.97!TFAP2A;;chr7:27205136..27205164,-!p1@HOXA9!1.25!16.71!HOXA9;;chr12:54393880..54393962,+!p1@HOXC9!1.25!16.71!HOXC9;;chr17:46703687..46703740,-!p1@HOXB9!1.19!14.41!HOXB9;;chr6:10415484..10415508,-!p3@TFAP2A!1.11!11.79!TFAP2A;;chr14:61116183..61116208,-!p1@SIX1!1.10!43.90!SIX1;;chr5:72744594..72744609,-!p1@FOXD1!1.09!51.76!FOXD1;;chr17:46688334..46688385,-!p1@HOXB7!1.09!16.38!HOXB7;;chr6:126240380..126240430,+!p2@NCOA7!1.08!28.83!NCOA7;;chr6:85473156..85473210,-!p2@TBX18!1.08!13.43!TBX18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.08!11.14!ZBED1;;chr5:321810..321877,+!p1@AHRR!1.06!33.42!AHRR;;chr14:37131058..37131139,+!p1@PAX9!1.06!10.48!PAX9;;chr7:35293685..35293718,-!p1@TBX20!1.01!9.17!TBX20;;chr8:72756637..72756664,-!p3@MSC!1.00!10.16!MSC;;chr5:172662197..172662216,-!p1@NKX2-5!0.99!8.85!NKX2-5;;chr20:30433396..30433414,-!p1@FOXS1!0.98!8.52!FOXS1;;chr1:25256756..25256774,-!p1@RUNX3!0.97!16.05!RUNX3;;chr17:46622229..46622257,-!p6@HOXB2!0.97!9.83!HOXB2;;chr5:158526917..158526932,-!p1@EBF1!0.95!20.31!EBF1;;chr6:10412477..10412490,-!p10@TFAP2A!0.95!7.86!TFAP2A;;chr9:96717629..96717644,-!p1@BARX1!0.95!7.86!BARX1;;chr6:85474299..85474324,-!p1@TBX18!0.94!14.09!TBX18;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.54!HOXA11;;chr8:80679993..80680011,-!p1@HEY1!0.92!10.81!HEY1;;chr7:63505799..63505904,+!p1@ZNF727!0.91!7.21!ZNF727;;chr6:126102292..126102329,+!p3@NCOA7!0.90!23.59!NCOA7;;chr1:25291475..25291511,-!p2@RUNX3!0.90!6.88!RUNX3;;chr14:29236269..29236285,+!p3@FOXG1!0.90!6.88!FOXG1;;chr17:46682321..46682362,-!p1@HOXB6!0.90!6.88!HOXB6;;chr5:72744445..72744466,-!p2@FOXD1!0.89!11.47!FOXD1;;chr7:57509877..57509895,+!p1@ZNF716!0.88!6.55!ZNF716;;chr20:42543441..42543497,+!p1@TOX2!0.87!30.14!TOX2;;chr2:172967621..172967637,-!p1@DLX2!0.86!17.36!DLX2;;chr8:72756667..72756736,-!p2@MSC!0.86!10.16!MSC;;chr14:62203595..62203676,+!p4@HIF1A!0.85!11.79!HIF1A;;chr3:157823517..157823562,-!p1@SHOX2!0.85!6.55!SHOX2;;chr17:46622205..46622218,-!p3@HOXB2!0.84!6.88!HOXB2;;chr2:172949484..172949522,+!p1@DLX1!0.84!5.90!DLX1;;chr12:54366975..54367001,+!p1@HOXC11!0.84!5.90!HOXC11;;chr6:10412576..10412599,-!p5@TFAP2A!0.84!5.90!TFAP2A;;chr7:156803329..156803362,-!p1@MNX1!0.84!5.90!MNX1;;chr7:27205106..27205134,-!p2@HOXA9!0.84!5.90!HOXA9;;chr5:134369905..134369972,-!p1@PITX1!0.83!9.17!PITX1;;chr8:72756063..72756125,-!p1@MSC!0.82!11.79!MSC;;chr17:46687959..46688007,-!p2@HOXB7!0.82!7.86!HOXB7;;chr20:55204351..55204377,+!p1@TFAP2C!0.82!7.21!TFAP2C;;chr12:54380404..54380433,+!p3@HOXC10!0.82!5.57!HOXC10;;chr3:12329358..12329393,+!p3@PPARG!0.81!14.09!PPARG;;chr20:32274150..32274166,-!p2@E2F1!0.80!10.48!E2F1;;chr14:29235961..29236008,+!p1@FOXG1!0.80!5.24!FOXG1;;chr6:85473227..85473243,-!p5@TBX18!0.80!5.24!TBX18;;chr3:157824001..157824078,-!p2@SHOX2!0.80!5.24!SHOX2;;chr20:32274179..32274213,-!p1@E2F1!0.79!37.68!E2F1;;chr20:48599506..48599526,+!p1@SNAI1!0.79!35.71!SNAI1;;chr12:80084737..80084763,-!p3@PAWR!0.79!20.97!PAWR;;chr19:20188776..20188826,+!p1@ZNF90!0.78!14.41!ZNF90;;chr9:114287433..114287513,+!p1@ZNF483!0.78!14.09!ZNF483;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.43!TWIST1;;chr19:12203100..12203132,+!p1@ZNF788!0.78!10.81!ZNF788;;chr6:28973090..28973094,-!p1@ZNF311!0.78!6.55!ZNF311;;chr6:126240356..126240379,+!p7@NCOA7!0.78!6.22!NCOA7;;chr6:1389789..1389821,+!p1@FOXF2!0.77!6.88!FOXF2;;chr8:72755987..72756002,-!p7@MSC!0.77!4.91!MSC;;chr12:54402745..54402788,+!p1@HOXC8!0.77!4.91!HOXC8;;chr2:172967323..172967336,-!p4@DLX2!0.77!4.91!DLX2;;chr2:172967353..172967365,-!p5@DLX2!0.77!4.91!DLX2;;chr2:176994408..176994492,+!p1@HOXD8!0.77!4.91!HOXD8;;chr2:223163706..223163730,-!p1@PAX3!0.77!4.91!PAX3;;chr7:17369649..17369664,+!p4@AHR!0.76!5.90!AHR;;chr11:46299199..46299233,+!p1@CREB3L1!0.75!26.21!CREB3L1;;chr1:50889103..50889145,-!p1@DMRTA2!0.75!4.59!DMRTA2;;chr21:47063625..47063658,+!p1@PCBP3!0.74!21.62!PCBP3;;chr17:41623692..41623715,-!p1@ETV4!0.74!20.97!ETV4;;chr3:12329397..12329433,+!p2@PPARG!0.74!11.14!PPARG;;chr2:177001290..177001315,+!p1@HOXD3!0.72!4.26!HOXD3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.72!4.26!HOXC5;;chr17:46806067..46806097,-!p1@HOXB13!0.72!4.26!HOXB13;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.55!TCF19;;chr7:27788205..27788255,+!p2@TAX1BP1!0.71!6.88!TAX1BP1;;chr17:46622440..46622477,-!p5@HOXB2!0.70!4.59!HOXB2;;chr19:12163769..12163798,-!p1@ZNF878!0.69!5.24!ZNF878;;chr1:119530493..119530572,-!p1@TBX15!0.69!3.93!TBX15;;chr2:46612891..46612907,+!p10@EPAS1!0.69!3.93!EPAS1;;chr11:44331576..44331650,-!p1@ALX4!0.69!3.93!ALX4;;chr12:54378923..54378966,+!p1@HOXC10!0.69!3.93!HOXC10;;chr13:79177703..79177729,-!p2@POU4F1!0.69!3.93!POU4F1;;chr14:62203749..62203798,+!p5@HIF1A!0.68!6.22!HIF1A;;chr20:42543506..42543549,+!p2@TOX2!0.67!9.83!TOX2;;chrX:66763856..66763896,+!p1@AR!0.67!5.57!AR;;chr14:62213758..62213774,+!p8@HIF1A!0.67!4.91!HIF1A;;chr12:54694758..54694805,-!p1@NFE2!0.67!4.59!NFE2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.67!3.93!GLIS1;;chr12:115121962..115121987,-!p1@TBX3!0.66!35.05!TBX3;;chr6:126102254..126102289,+!p5@NCOA7!0.66!11.14!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!0.66!3.60!PITX1;;chr11:31832610..31832639,-!p5@PAX6!0.66!3.60!PAX6;;chr12:54380112..54380126,+!p5@HOXC10!0.66!3.60!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.60!HOXC8;;chr19:58545454..58545498,+!p1@ZSCAN1!0.66!3.60!ZSCAN1;;chr7:138666053..138666146,-!p1@KIAA1549!0.65!16.38!KIAA1549;;chr17:7590797..7590815,-!p1@TP53!0.64!172.32!TP53;;chr6:28973366..28973394,-!p2@ZNF311!0.64!4.26!ZNF311;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.63!7.86!SOHLH2;;chr14:62213827..62213853,+!p6@HIF1A!0.63!4.91!HIF1A;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.26!FOXD1;;chr6:1612248..1612281,+!p2@FOXC1!0.63!3.60!FOXC1;;chr17:7197911..7197964,-!p1@YBX2!0.63!3.28!YBX2;;chr9:126774018..126774055,+!p1@LHX2!0.63!3.28!LHX2;;chr14:37132241..37132304,+!p3@PAX9!0.63!3.28!PAX9;;chr14:62214151..62214164,+!p11@HIF1A!0.63!3.28!HIF1A;;chr2:172950227..172950249,+!p2@DLX1!0.63!3.28!DLX1;;chr2:172967276..172967296,-!p3@DLX2!0.63!3.28!DLX2;;chr2:176969228..176969260,+!p1@HOXD11!0.63!3.28!HOXD11;;chr11:615942..615957,-!p1@IRF7!0.62!36.04!IRF7;;chr15:76629123..76629151,+!p1@ISL2!0.62!3.60!ISL2;;chr20:48807615..48807644,+!p6@CEBPB!0.61!5.57!CEBPB;;chr8:80680024..80680046,-!p2@HEY1!0.61!3.60!HEY1;;chr1:8934931..8934947,-!p4@ENO1!0.60!11.47!ENO1;;chr1:935398..935465,-!p2@HES4!0.60!6.88!HES4;;chr6:45390442..45390479,+!p8@RUNX2!0.60!4.91!RUNX2;;chr2:46602901..46602926,+!p7@EPAS1!0.60!4.26!EPAS1;;chr3:12329320..12329338,+!p4@PPARG!0.60!3.28!PPARG;;chr2:119604456..119604501,-!p2@EN1!0.60!2.95!EN1;;chr2:172967242..172967265,-!p2@DLX2!0.60!2.95!DLX2;;chr2:176969179..176969226,+!p2@HOXD11!0.60!2.95!HOXD11;;chr17:46688310..46688323,-!p4@HOXB7!0.60!2.95!HOXB7;;chr17:8027418..8027432,-!p1@HES7!0.60!2.95!HES7;;chr19:2867325..2867348,+!p1@ZNF556!0.60!2.95!ZNF556;;chr11:32457075..32457095,-!p1@WT1!0.60!2.95!WT1;;chr14:29234581..29234601,+!p2@FOXG1!0.60!2.95!FOXG1;;chr5:172662230..172662241,-!p3@NKX2-5!0.60!2.95!NKX2-5;;chr8:40755333..40755352,-!p1@ZMAT4!0.60!2.95!ZMAT4;;chr20:39317868..39317884,-!p1@MAFB!0.59!41.93!MAFB;;chr17:46621937..46621966,-!p2@HOXB2!0.59!9.17!HOXB2;;chr6:45390002..45390023,+!p6@RUNX2!0.59!5.57!RUNX2;;chr19:22817119..22817145,+!p1@ZNF492!0.59!5.24!ZNF492;;chr11:120107344..120107351,+!p1@POU2F3!0.59!3.60!POU2F3;;chr11:65667884..65667895,-!p2@FOSL1!0.58!12.78!FOSL1;;chr11:46299539..46299620,+!p2@CREB3L1!0.58!5.24!CREB3L1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.58!4.59!ZNF853;;chr14:62193465..62193490,+!p7@HIF1A!0.58!4.26!HIF1A;;chr8:72756023..72756055,-!p6@MSC!0.58!3.60!MSC;;chr12:57914286..57914304,-!p1@DDIT3!0.57!122.85!DDIT3;;chr20:42295713..42295738,+!p2@MYBL2!0.57!19.66!MYBL2;;chr6:20402102..20402152,+!p1@E2F3!0.57!13.43!E2F3;;chr20:48807779..48807802,+!p10@CEBPB!0.57!4.91!CEBPB;;chr1:935496..935509,-!p3@HES4!0.57!4.59!HES4;;chr16:69726820..69726843,+!p3@NFAT5!0.57!4.26!NFAT5;;chr1:170633348..170633399,+!p2@PRRX1!0.57!3.93!PRRX1;;chr20:61493117..61493187,-!p1@TCFL5!0.56!37.02!TCFL5;;chr12:53856284..53856299,+!p3@PCBP2!0.56!8.85!PCBP2;;chr14:61191018..61191048,-!p1@SIX4!0.56!6.55!SIX4;;chr13:46543725..46543747,-!p2@ZC3H13!0.56!5.57!ZC3H13;;chr11:31832687..31832704,-!p6@PAX6!0.56!2.62!PAX6;;chr12:54366894..54366922,+!p2@HOXC11!0.56!2.62!HOXC11;;chr12:54694807..54694832,-!p3@NFE2!0.56!2.62!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.56!2.62!ZIC5;;chr13:100634004..100634025,+!p2@ZIC2!0.56!2.62!ZIC2;;chr19:47523058..47523114,+!p1@NPAS1!0.56!2.62!NPAS1;;chr1:50889155..50889173,-!p2@DMRTA2!0.56!2.62!DMRTA2;;chr8:72756380..72756427,-!p8@MSC!0.56!2.62!MSC;;chr22:22874610..22874616,-!p1@ZNF280A!0.56!2.62!ZNF280A;;chr14:95236440..95236465,-!p1@GSC!0.56!2.62!GSC;;chr3:141868357..141868393,-!p3@TFDP2!0.55!20.64!TFDP2;;chr5:180287681..180287694,-!p2@ZFP62!0.55!6.22!ZFP62;;chrX:66763815..66763854,+!p2@AR!0.55!3.60!AR;;chr11:615570..615721,-!p2@IRF7!0.54!5.57!IRF7;;chr15:42743341..42743377,-!p3@ZFP106!0.54!4.59!ZFP106;;chr12:80083544..80083558,-!p13@PAWR!0.54!3.28!PAWR;;chr22:38597987..38598021,+!p2@MAFF!0.53!18.35!MAFF;;chr2:178257401..178257432,-!p4@NFE2L2!0.53!17.04!NFE2L2;;chr11:65686732..65686756,+!p2@DRAP1!0.53!12.45!DRAP1;;chr9:73029219..73029289,-!p2@KLF9!0.53!8.85!KLF9;;chr6:27356527..27356557,+!p2@ZNF391!0.53!3.60!ZNF391;;chr5:72743793..72743855,-!p4@FOXD1!0.53!2.95!FOXD1;;chr20:42295745..42295765,+!p1@MYBL2!0.52!48.81!MYBL2;;chr17:41623009..41623053,-!p4@ETV4!0.52!4.26!ETV4;;chr17:46692318..46692362,-!p5@HOXB8!0.52!2.29!HOXB8;;chr6:10412338..10412345,-!p17@TFAP2A!0.52!2.29!TFAP2A;;chr6:85474198..85474212,-!p3@TBX18!0.52!2.29!TBX18;;chr7:27213893..27213954,-!p1@HOXA10!0.52!2.29!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.52!2.29!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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=FF:10689-109F5
 |fonse_cell_line_closure=FF:10689-109F5
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mixed%2520mullerian%2520tumor%2520cell%2520line%253aHTMMT.CNhs11944.10689-109F5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mixed%2520mullerian%2520tumor%2520cell%2520line%253aHTMMT.CNhs11944.10689-109F5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mixed%2520mullerian%2520tumor%2520cell%2520line%253aHTMMT.CNhs11944.10689-109F5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mixed%2520mullerian%2520tumor%2520cell%2520line%253aHTMMT.CNhs11944.10689-109F5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mixed%2520mullerian%2520tumor%2520cell%2520line%253aHTMMT.CNhs11944.10689-109F5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10689-109F5
 |is_a=DOID:4236;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0003134
+|is_obsolete=
+|library_id=CNhs11944
+|library_id_phase_based=2:CNhs11944
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10689
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10689
 |name=mixed mullerian tumor cell line:HTMMT
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11944,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=109
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=11.20041
 |sample_age=66
+|sample_category=cell lines
 |sample_cell_catalog=RCB0660
 |sample_cell_line=HTMMT
@@ Line 77: / Line 99: @@
 |sample_tissue=endometrium
 |top_motifs=AIRE:2.46406381048;TEF:2.22460480677;UFEwm:1.98645623338;ZBTB16:1.76116802501;EVI1:1.72999033084;RXR{A,B,G}:1.45336756001;HMGA1,2:1.45281619548;ZNF384:1.42207990556;FOXD3:1.39944911757;NKX3-1:1.38775652914;PAX4:1.2842688278;NR6A1:1.22232657954;IKZF2:1.18616498846;FOXL1:1.1331056798;POU1F1:1.13149075159;LHX3,4:1.04675766946;CDX1,2,4:0.894956105088;HOX{A4,D4}:0.884944399121;EN1,2:0.866985625026;IKZF1:0.808925620439;ONECUT1,2:0.768334049408;HOXA9_MEIS1:0.766086069903;RBPJ:0.751094815584;NKX2-2,8:0.724431336523;FOXP1:0.690023625308;IRF1,2:0.65965250967;NKX6-1,2:0.635178995677;ALX4:0.628911313958;PITX1..3:0.605431513478;bHLH_family:0.571914001666;TAL1_TCF{3,4,12}:0.541934054781;FOXP3:0.529681338711;NR5A1,2:0.506318291632;NKX2-1,4:0.469443922051;NFE2L1:0.433305903628;NFIX:0.420192720073;CDC5L:0.418391410253;NKX3-2:0.41736239108;E2F1..5:0.405151700389;SRF:0.396065535521;POU6F1:0.387054887244;TOPORS:0.377629713289;HIF1A:0.360409785464;POU3F1..4:0.339312812687;ARID5B:0.323558495467;NR3C1:0.320297548042;NFY{A,B,C}:0.319851637384;ELK1,4_GABP{A,B1}:0.297426980291;ZNF423:0.254994562744;IRF7:0.243897856389;ZNF143:0.241710384569;ZIC1..3:0.238065613427;RORA:0.215883959316;LMO2:0.198099253101;MAFB:0.182799839349;TBX4,5:0.167698243205;OCT4_SOX2{dimer}:0.162078952884;GATA4:0.159954824652;NKX2-3_NKX2-5:0.155852642715;ATF4:0.146980360645;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.145484024397;ESR1:0.13087381337;NANOG{mouse}:0.127175021988;NFE2L2:0.122280224887;HOX{A6,A7,B6,B7}:0.118580602967;HLF:0.118047152853;PAX3,7:0.116834630166;HBP1_HMGB_SSRP1_UBTF:0.0899524444475;GFI1B:0.0784544440672;STAT2,4,6:0.0752843695607;PAX8:0.0660644474241;POU5F1:0.0599642186543;ALX1:0.0580545351368;TFAP4:0.0457689190643;ZBTB6:0.0453737326406;NRF1:0.0443176704895;DMAP1_NCOR{1,2}_SMARC:0.0116198358763;MYB:0.0062401738708;RXRA_VDR{dimer}:0.00558849504161;GLI1..3:-0.0106152279139;T:-0.0480866779902;TFDP1:-0.0529209941613;PRDM1:-0.0783833175326;SREBF1,2:-0.0863296063045;HES1:-0.0955932641085;TEAD1:-0.104920519289;CEBPA,B_DDIT3:-0.118582047609;REST:-0.12233448379;MTE{core}:-0.126613222528;BREu{core}:-0.130591310667;HOX{A5,B5}:-0.138435853869;GFI1:-0.170974791206;TLX1..3_NFIC{dimer}:-0.177433261736;NFKB1_REL_RELA:-0.180381805528;MYOD1:-0.204025349449;XBP1:-0.204260588849;YY1:-0.207647939397;MYBL2:-0.211865860533;RFX1:-0.214431902944;SOX17:-0.217573270161;KLF4:-0.221657921178;TFAP2B:-0.230104244276;FOXQ1:-0.238052652805;PPARG:-0.268339109671;HSF1,2:-0.275161527928;PAX5:-0.275402755976;RREB1:-0.278009820263;HIC1:-0.285559691681;TP53:-0.305637476114;HNF1A:-0.309990945502;ADNP_IRX_SIX_ZHX:-0.327361974446;SNAI1..3:-0.327845747692;DBP:-0.331077773647;CUX2:-0.331867487509;ZFP161:-0.337585994631;GTF2A1,2:-0.3433879753;PDX1:-0.347051000476;GTF2I:-0.348011633391;BACH2:-0.356696319931;VSX1,2:-0.358947483306;FOXO1,3,4:-0.365663469959;STAT1,3:-0.380865618417;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.395891580213;ATF6:-0.400874485912;ATF5_CREB3:-0.410322878312;STAT5{A,B}:-0.414080461938;HNF4A_NR2F1,2:-0.421498744843;ESRRA:-0.429567934063;RUNX1..3:-0.443033675813;POU2F1..3:-0.446856741455;PRRX1,2:-0.457795724305;MZF1:-0.463901170652;FOX{F1,F2,J1}:-0.466081530823;AHR_ARNT_ARNT2:-0.468234733411;PBX1:-0.472166707892;TFAP2{A,C}:-0.49517613582;MTF1:-0.512028232081;GCM1,2:-0.513257130325;FOSL2:-0.513302426834;SPIB:-0.52406077264;NFE2:-0.532765864128;PAX2:-0.539602375949;EBF1:-0.543486649284;MYFfamily:-0.549914166436;FOXA2:-0.559322579602;PAX1,9:-0.561413192105;FOS_FOS{B,L1}_JUN{B,D}:-0.562907748685;CREB1:-0.573621365127;SP1:-0.585955300608;TFCP2:-0.586512567914;CRX:-0.602262746801;NR1H4:-0.609972588023;FOXM1:-0.624242387224;SOX5:-0.626988692226;SPI1:-0.627129689282;PATZ1:-0.663346228821;NFIL3:-0.668833606506;GZF1:-0.678418479403;FOXN1:-0.681377103991;JUN:-0.707980858869;XCPE1{core}:-0.714150511862;BPTF:-0.727500685633;TBP:-0.753377903661;ZNF238:-0.755160936703;MEF2{A,B,C,D}:-0.776367946438;EGR1..3:-0.783814312627;PAX6:-0.790403515638;ATF2:-0.822560037802;MED-1{core}:-0.834189597798;GATA6:-0.835061201513;ELF1,2,4:-0.836197496799;SOX{8,9,10}:-0.859620325301;SMAD1..7,9:-0.897036248018;ZEB1:-0.921914155527;FOX{D1,D2}:-0.922912331323;ETS1,2:-0.926735427882;NHLH1,2:-0.941603848846;NFATC1..3:-1.04553514112;EP300:-1.05337756688;TLX2:-1.08220769818;RFX2..5_RFXANK_RFXAP:-1.08317508452;HAND1,2:-1.08668889592;SOX2:-1.09941941035;MAZ:-1.10204059978;LEF1_TCF7_TCF7L1,2:-1.11823732697;AR:-1.26993885706;HMX1:-1.28529990808;FOX{I1,J2}:-1.29684993325;TGIF1:-1.33297097664;ZNF148:-1.36910424184;SPZ1:-1.38137398549;NANOG:-1.54880376493
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10689-109F5;search_select_hide=table117:FF:10689-109F5
 }}

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FF:10689-109F5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0