FF:10697-109G4: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	peripheral neuroectodermal tumor cell line:KU-SN
Species:	Human (Homo sapiens)
Library ID:	CNhs11830
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	peripheral nervous system
dev stage	NA
sex	female
age	4
cell type	unclassifiable
cell line	KU-SN
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005692

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11830		CAGE		DRX007983		DRR008855

Accession ID Hg19

Library id		BAM		CTSS
CNhs11830		DRZ000280		DRZ001665

Accession ID Hg38

Library id		BAM		CTSS
CNhs11830		DRZ011630		DRZ013015

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.389
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.168
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0704
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0704
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	1.16
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.153
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0855
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0297
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0.0704
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0183
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0704
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.111
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0863
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0015
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0704
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.069
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0332
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0676
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0221
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.313
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0.184
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11830

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.01137e-4
MA0003.1	MA0003.1	0.152
MA0004.1	MA0004.1	0.00535
MA0006.1	MA0006.1	0.0788
MA0007.1	MA0007.1	0.197
MA0009.1	MA0009.1	0.636
MA0014.1	MA0014.1	0.926
MA0017.1	MA0017.1	2.11012e-4
MA0018.2	MA0018.2	0.00349
MA0019.1	MA0019.1	0.154
MA0024.1	MA0024.1	0.0214
MA0025.1	MA0025.1	0.843
MA0027.1	MA0027.1	0.453
MA0028.1	MA0028.1	0.121
MA0029.1	MA0029.1	0.697
MA0030.1	MA0030.1	0.355
MA0031.1	MA0031.1	0.2
MA0035.2	MA0035.2	0.629
MA0038.1	MA0038.1	0.117
MA0039.2	MA0039.2	0.037
MA0040.1	MA0040.1	0.0211
MA0041.1	MA0041.1	0.141
MA0042.1	MA0042.1	0.193
MA0043.1	MA0043.1	0.0709
MA0046.1	MA0046.1	0.008
MA0047.2	MA0047.2	0.577
MA0048.1	MA0048.1	0.0822
MA0050.1	MA0050.1	3.74768e-11
MA0051.1	MA0051.1	4.99184e-7
MA0052.1	MA0052.1	0.392
MA0055.1	MA0055.1	0.209
MA0057.1	MA0057.1	0.155
MA0058.1	MA0058.1	0.00138
MA0059.1	MA0059.1	0.0274
MA0060.1	MA0060.1	0.037
MA0061.1	MA0061.1	0.224
MA0062.2	MA0062.2	0.203
MA0065.2	MA0065.2	0.0107
MA0066.1	MA0066.1	0.247
MA0067.1	MA0067.1	0.074
MA0068.1	MA0068.1	0.162
MA0069.1	MA0069.1	0.76
MA0070.1	MA0070.1	0.433
MA0071.1	MA0071.1	0.334
MA0072.1	MA0072.1	0.661
MA0073.1	MA0073.1	0.239
MA0074.1	MA0074.1	0.624
MA0076.1	MA0076.1	0.0175
MA0077.1	MA0077.1	0.315
MA0078.1	MA0078.1	0.368
MA0079.2	MA0079.2	0.0523
MA0080.2	MA0080.2	3.36862e-12
MA0081.1	MA0081.1	0.0332
MA0083.1	MA0083.1	0.0548
MA0084.1	MA0084.1	0.337
MA0087.1	MA0087.1	0.101
MA0088.1	MA0088.1	0.0364
MA0090.1	MA0090.1	0.117
MA0091.1	MA0091.1	0.0557
MA0092.1	MA0092.1	0.188
MA0093.1	MA0093.1	0.00501
MA0099.2	MA0099.2	2.81495e-14
MA0100.1	MA0100.1	0.248
MA0101.1	MA0101.1	0.144
MA0102.2	MA0102.2	0.0152
MA0103.1	MA0103.1	0.949
MA0104.2	MA0104.2	4.07209e-4
MA0105.1	MA0105.1	0.21
MA0106.1	MA0106.1	0.352
MA0107.1	MA0107.1	0.0499
MA0108.2	MA0108.2	0.00936
MA0111.1	MA0111.1	0.955
MA0112.2	MA0112.2	0.00791
MA0113.1	MA0113.1	0.4
MA0114.1	MA0114.1	0.00426
MA0115.1	MA0115.1	0.064
MA0116.1	MA0116.1	0.404
MA0117.1	MA0117.1	0.536
MA0119.1	MA0119.1	0.737
MA0122.1	MA0122.1	0.136
MA0124.1	MA0124.1	0.143
MA0125.1	MA0125.1	0.835
MA0131.1	MA0131.1	0.0607
MA0135.1	MA0135.1	0.0465
MA0136.1	MA0136.1	2.51424e-6
MA0137.2	MA0137.2	0.00219
MA0138.2	MA0138.2	0.293
MA0139.1	MA0139.1	0.566
MA0140.1	MA0140.1	0.386
MA0141.1	MA0141.1	0.0912
MA0142.1	MA0142.1	0.264
MA0143.1	MA0143.1	0.202
MA0144.1	MA0144.1	0.00119
MA0145.1	MA0145.1	0.0221
MA0146.1	MA0146.1	0.111
MA0147.1	MA0147.1	1.02031e-4
MA0148.1	MA0148.1	0.832
MA0149.1	MA0149.1	0.00686
MA0150.1	MA0150.1	7.00069e-4
MA0152.1	MA0152.1	0.0332
MA0153.1	MA0153.1	0.0935
MA0154.1	MA0154.1	0.334
MA0155.1	MA0155.1	0.181
MA0156.1	MA0156.1	0.00645
MA0157.1	MA0157.1	0.543
MA0159.1	MA0159.1	0.17
MA0160.1	MA0160.1	0.0067
MA0162.1	MA0162.1	0.663
MA0163.1	MA0163.1	0.149
MA0164.1	MA0164.1	0.655
MA0258.1	MA0258.1	0.076
MA0259.1	MA0259.1	0.00632

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11830

Novel motif	Logo	P-value
1	1	0.412
10	10	0.396
100	100	0.168
101	101	0.921
102	102	0.948
103	103	0.0492
104	104	0.456
105	105	0.26
106	106	0.00265
107	107	0.00518
108	108	0.613
109	109	0.0867
11	11	0.66
110	110	0.798
111	111	0.762
112	112	0.298
113	113	0.28
114	114	0.301
115	115	0.792
116	116	0.923
117	117	0.808
118	118	0.887
119	119	0.741
12	12	0.118
120	120	0.405
121	121	0.0359
122	122	0.0968
123	123	0.0208
124	124	0.396
125	125	0.829
126	126	0.466
127	127	0.315
128	128	0.105
129	129	0.208
13	13	0.876
130	130	0.934
131	131	0.389
132	132	0.397
133	133	0.882
134	134	0.814
135	135	0.0332
136	136	0.1
137	137	0.319
138	138	0.898
139	139	0.591
14	14	0.544
140	140	0.575
141	141	0.373
142	142	0.514
143	143	0.364
144	144	0.813
145	145	0.798
146	146	0.746
147	147	0.741
148	148	0.0972
149	149	0.186
15	15	0.958
150	150	0.334
151	151	0.658
152	152	0.00175
153	153	0.36
154	154	0.331
155	155	0.949
156	156	0.78
157	157	0.462
158	158	0.318
159	159	0.143
16	16	0.275
160	160	0.535
161	161	0.902
162	162	0.436
163	163	0.696
164	164	0.462
165	165	0.646
166	166	0.832
167	167	0.147
168	168	0.0988
169	169	0.0355
17	17	0.499
18	18	0.429
19	19	0.123
2	2	0.0888
20	20	0.48
21	21	0.95
22	22	0.0582
23	23	0.0657
24	24	0.521
25	25	0.613
26	26	0.356
27	27	0.68
28	28	0.933
29	29	0.564
3	3	0.837
30	30	0.0587
31	31	0.342
32	32	0.015
33	33	0.899
34	34	0.143
35	35	0.351
36	36	0.134
37	37	0.548
38	38	0.513
39	39	0.267
4	4	0.788
40	40	0.34
41	41	0.066
42	42	0.285
43	43	0.74
44	44	0.831
45	45	0.131
46	46	0.825
47	47	0.568
48	48	0.987
49	49	0.912
5	5	0.582
50	50	0.297
51	51	0.846
52	52	0.129
53	53	0.799
54	54	0.32
55	55	0.572
56	56	0.996
57	57	0.146
58	58	0.666
59	59	0.0549
6	6	0.673
60	60	0.141
61	61	0.915
62	62	0.475
63	63	0.71
64	64	0.705
65	65	0.214
66	66	0.414
67	67	0.0328
68	68	0.526
69	69	0.289
7	7	0.702
70	70	0.529
71	71	0.934
72	72	0.872
73	73	0.00684
74	74	0.303
75	75	0.538
76	76	0.429
77	77	0.0528
78	78	0.334
79	79	0.467
8	8	0.973
80	80	0.0103
81	81	0.553
82	82	0.514
83	83	0.627
84	84	0.732
85	85	0.0548
86	86	0.855
87	87	0.0742
88	88	0.25
89	89	0.229
9	9	0.119
90	90	0.198
91	91	0.155
92	92	0.572
93	93	0.153
94	94	0.892
95	95	0.882
96	96	0.672
97	97	0.811
98	98	0.31
99	99	0.61

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11830

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:171 neuroectodermal tumor
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0002346 neurectoderm

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0002346 (neurectoderm)
0004121 (ectoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
0010316 (germ layer / neural crest)
0005291 (embryonic tissue)
0010317 (germ layer / neural crest derived structure)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007877
+|DRA_sample_Accession=CAGE@SAMD00005692
-|accession_numbers=CAGE;DRX007983;DRR008855;DRZ000280;DRZ001665
+|accession_numbers=CAGE;DRX007983;DRR008855;DRZ000280;DRZ001665;DRZ011630;DRZ013015
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0010316,UBERON:0005291,UBERON:0010317
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:25034067..25034088,-!p1@ARX!2.57!374.43!ARX;;chr7:19157248..19157268,-!p1@TWIST1!2.51!858.78!TWIST1;;chr1:214161272..214161322,+!p1@PROX1!2.35!308.30!PROX1;;chr2:223163706..223163730,-!p1@PAX3!1.95!87.41!PAX3;;chr2:219849012..219849065,-!p1@FEV!1.94!86.88!FEV;;chr18:53089453..53089482,-!p11@TCF4!1.88!74.22!TCF4;;chr13:112721457..112721482,+!p1@SOX1!1.84!67.71!SOX1;;chr1:38512457..38512474,-!p1@POU3F1!1.83!72.63!POU3F1;;chr15:57511609..57511651,+!p2@TCF12!1.75!91.28!TCF12;;chr10:119302645..119302712,+!p3@EMX2!1.73!52.59!EMX2;;chr1:170632137..170632172,+!p10@PRRX1!1.71!50.12!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!1.68!47.31!PRRX1;;chr12:114843940..114843955,-!p2@TBX5!1.68!46.61!TBX5;;chr17:46622229..46622257,-!p6@HOXB2!1.66!51.53!HOXB2;;chr8:99956662..99956684,+!p1@OSR2!1.62!62.08!OSR2;;chr13:112721490..112721504,+!p2@SOX1!1.62!40.63!SOX1;;chr1:3569072..3569093,+!p1@TP73!1.62!40.27!TP73;;chr1:25256756..25256774,-!p1@RUNX3!1.60!71.40!RUNX3;;chr10:119302232..119302265,+!p1@EMX2!1.60!39.04!EMX2;;chr10:35484053..35484076,+!p1@CREM!1.56!84.95!CREM;;chr1:170632285..170632309,+!p1@PRRX1!1.55!38.87!PRRX1;;chr18:53089493..53089517,-!p15@TCF4!1.55!34.65!TCF4;;chr20:42543441..42543497,+!p1@TOX2!1.54!147.20!TOX2;;chr17:48046642..48046667,+!p3@DLX4!1.54!33.42!DLX4;;chr17:46622440..46622477,-!p5@HOXB2!1.53!36.76!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.51!35.70!HOXB2;;chr9:132427883..132427951,+!p2@PRRX2!1.50!30.95!PRRX2;;chr7:19157043..19157088,-!p2@TWIST1!1.49!72.99!TWIST1;;chr1:214161358..214161377,+!p3@PROX1!1.44!26.38!PROX1;;chrX:30327504..30327509,-!p1@NR0B1!1.43!26.03!NR0B1;;chr20:42574529..42574563,+!p3@TOX2!1.42!25.50!TOX2;;chr8:81787006..81787031,-!p2@ZNF704!1.40!23.92!ZNF704;;chr3:21792682..21792720,-!p1@ZNF385D!1.39!23.57!ZNF385D;;chr5:88178983..88179012,-!p1@MEF2C!1.38!172.35!MEF2C;;chr13:100634031..100634045,+!p1@ZIC2!1.38!23.22!ZIC2;;chr13:37494275..37494304,-!p2@SMAD9!1.37!22.69!SMAD9;;chr4:174451370..174451387,-!p1@HAND2!1.37!22.69!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.36!21.81!EMX2;;chr1:209979467..209979494,-!p1@IRF6!1.35!23.74!IRF6;;chr21:38071430..38071456,+!p1@SIM2!1.34!21.10!SIM2;;chr13:73633131..73633149,+!p1@KLF5!1.33!209.81!KLF5;;chr19:13134772..13134822,+!p2@NFIX!1.30!27.96!NFIX;;chr10:77161650..77161661,-!p4@ZNF503!1.29!25.68!ZNF503;;chr12:114843910..114843921,-!p6@TBX5!1.29!18.47!TBX5;;chr5:174151553..174151610,+!p1@MSX2!1.26!28.67!MSX2;;chr15:96874012..96874042,+!p2@NR2F2!1.24!145.80!NR2F2;;chr10:118898078..118898093,-!p3@VAX1!1.24!16.18!VAX1;;chr12:54378923..54378966,+!p1@HOXC10!1.23!16.00!HOXC10;;chr7:63505799..63505904,+!p1@ZNF727!1.23!15.83!ZNF727;;chr20:42543506..42543549,+!p2@TOX2!1.22!36.93!TOX2;;chr9:102584262..102584276,+!p1@NR4A3!1.22!35.00!NR4A3;;chr2:172949484..172949522,+!p1@DLX1!1.22!15.65!DLX1;;chr2:73520667..73520683,-!p1@EGR4!1.22!15.48!EGR4;;chr12:54785074..54785122,-!p2@ZNF385A!1.20!22.69!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.20!21.46!CSRNP3;;chr3:18486354..18486377,-!p2@SATB1!1.20!18.47!SATB1;;chr5:88179195..88179224,-!p3@MEF2C!1.19!23.22!MEF2C;;chr17:46655704..46655718,-!p2@HOXB4!1.19!21.46!HOXB4;;chr18:56532100..56532130,+!p1@ZNF532!1.18!25.85!ZNF532;;chr1:170632477..170632506,+!p6@PRRX1!1.18!14.07!PRRX1;;chr8:71053651..71053662,-!p24@NCOA2!1.16!13.54!NCOA2;;chr11:44331576..44331650,-!p1@ALX4!1.16!13.54!ALX4;;chr13:37494248..37494260,-!p3@SMAD9!1.16!13.54!SMAD9;;chr1:8763463..8763499,-!p6@RERE!1.15!35.88!RERE;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!21.98!TFAP2A;;chr11:113930291..113930339,+!p2@ZBTB16!1.15!21.63!ZBTB16;;chr13:112721521..112721535,+!p3@SOX1!1.15!13.19!SOX1;;chr8:86089369..86089408,+!p1@E2F5!1.14!34.82!E2F5;;chr13:100634004..100634025,+!p2@ZIC2!1.14!12.84!ZIC2;;chr2:172967276..172967296,-!p3@DLX2!1.14!12.84!DLX2;;chr15:37392094..37392116,-!p6@MEIS2!1.13!15.65!MEIS2;;chr1:170632250..170632277,+!p7@PRRX1!1.13!12.49!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.13!12.49!PRRX1;;chr9:20621927..20621996,-!p3@MLLT3!1.12!20.40!MLLT3;;chr15:76629123..76629151,+!p1@ISL2!1.12!13.54!ISL2;;chr9:129376201..129376225,+!p1@LMX1B!1.12!12.31!LMX1B;;chr6:10415484..10415508,-!p3@TFAP2A!1.12!12.14!TFAP2A;;chr15:96873984..96873999,+!p3@NR2F2!1.11!87.58!NR2F2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!11.78!ZBED1;;chr3:21792790..21792824,-!p4@ZNF385D!1.10!11.61!ZNF385D;;chr6:10415276..10415341,-!p2@TFAP2A!1.09!13.89!TFAP2A;;chr1:214161328..214161348,+!p2@PROX1!1.09!11.43!PROX1;;chr4:174450089..174450153,-!p2@HAND2!1.09!11.43!HAND2;;chr12:114843852..114843867,-!p3@TBX5!1.09!11.26!TBX5;;chr15:71184890..71184909,-!p3@THAP10!1.08!14.25!THAP10;;chr2:102091144..102091183,-!p2@RFX8!1.08!11.08!RFX8;;chr2:219849213..219849224,-!p6@FEV!1.08!10.90!FEV;;chr10:119302268..119302282,+!p4@EMX2!1.08!10.90!EMX2;;chr17:47892398..47892407,+!p2@KAT7!1.08!10.90!KAT7;;chr16:73092898..73092931,-!p1@ZFHX3!1.07!41.51!ZFHX3;;chr1:164528616..164528660,+!p5@PBX1!1.07!22.34!PBX1;;chr5:132299339..132299359,-!p4@AFF4!1.06!49.77!AFF4;;chr18:53089521..53089533,-!p22@TCF4!1.06!10.55!TCF4;;chr17:46806035..46806059,-!p2@HOXB13!1.06!10.38!HOXB13;;chr5:174151612..174151633,+!p2@MSX2!1.06!10.38!MSX2;;chr1:164528687..164528711,+!p6@PBX1!1.05!11.96!PBX1;;chr9:129376233..129376251,+!p2@LMX1B!1.05!10.20!LMX1B;;chr2:172967621..172967637,-!p1@DLX2!1.04!27.08!DLX2;;chr7:102985288..102985310,-!p2@DNAJC2!1.04!23.92!DNAJC2;;chr12:125002739..125002756,-!p6@NCOR2!1.04!14.77!NCOR2;;chr10:119302508..119302559,+!p5@EMX2!1.04!10.02!EMX2;;chr18:77155922..77155939,+!p1@NFATC1!1.03!26.91!NFATC1;;chr2:71127699..71127744,+!p1@VAX2!1.03!20.23!VAX2;;chr12:125002827..125002855,-!p5@NCOR2!1.03!13.89!NCOR2;;chr17:48046671..48046697,+!p4@DLX4!1.03!9.67!DLX4;;chr9:20622444..20622468,-!p2@MLLT3!1.01!30.43!MLLT3;;chr15:96874063..96874074,+!p10@NR2F2!1.01!17.06!NR2F2;;chr16:8962202..8962222,-!p3@CARHSP1!1.01!16.71!CARHSP1;;chr13:37494306..37494324,-!p4@SMAD9!1.01!9.32!SMAD9;;chr15:37392724..37392757,-!p1@MEIS2!1.00!41.68!MEIS2;;chr7:150945754..150945789,-!p2@SMARCD3!1.00!28.14!SMARCD3;;chr1:170633262..170633285,+!p3@PRRX1!1.00!10.38!PRRX1;;chr3:128206762..128206781,-!p2@GATA2!0.99!55.40!GATA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.99!38.16!ZFHX4;;chr1:164528911..164528940,+!p7@PBX1!0.99!13.19!PBX1;;chr1:3569101..3569115,+!p2@TP73!0.99!8.79!TP73;;chr17:46655672..46655697,-!p3@HOXB4!0.99!8.79!HOXB4;;chr5:88179230..88179270,-!p4@MEF2C!0.98!17.06!MEF2C;;chr15:96874145..96874166,+!p7@NR2F2!0.98!16.88!NR2F2;;chr15:57511589..57511608,+!p4@TCF12!0.98!8.62!TCF12;;chr10:102891048..102891078,+!p1@TLX1!0.98!8.62!TLX1;;chr12:52430894..52430952,+!p3@NR4A1!0.97!16.36!NR4A1;;chr10:118897911..118897974,-!p1@VAX1!0.97!8.27!VAX1;;chr8:71053573..71053617,-!p25@NCOA2!0.97!8.27!NCOA2;;chr9:16728161..16728185,-!p4@BNC2!0.96!8.09!BNC2;;chr1:3607228..3607250,+!p8@TP73!0.96!8.09!TP73;;chr21:38071403..38071428,+!p2@SIM2!0.96!8.09!SIM2;;chr5:88179017..88179046,-!p2@MEF2C!0.95!32.71!MEF2C;;chr12:54366894..54366922,+!p2@HOXC11!0.95!7.91!HOXC11;;chr12:54366949..54366973,+!p3@HOXC11!0.95!7.91!HOXC11;;chr12:26277956..26277980,-!p1@BHLHE41!0.94!28.84!BHLHE41;;chr6:170863353..170863368,+!p2@TBP!0.94!15.48!TBP;;chr14:76842457..76842494,+!p1@ESRRB!0.94!7.74!ESRRB;;chr10:131762504..131762555,-!p1@EBF3!0.94!7.74!EBF3;;chr1:8763440..8763460,-!p2@RERE!0.93!39.40!RERE;;chr21:34144115..34144138,-!p2@GCFC1!0.93!22.69!GCFC1;;chr1:203764633..203764674,+!p2@ZC3H11A!0.93!12.49!ZC3H11A;;chr13:112721551..112721560,+!p4@SOX1!0.93!7.56!SOX1;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.56!HOXD8;;chr18:53089538..53089578,-!p14@TCF4!0.93!7.56!TCF4;;chr8:86089417..86089440,+!p2@E2F5!0.92!15.12!E2F5;;chr11:113930425..113930471,+!p1@ZBTB16!0.92!10.73!ZBTB16;;chr13:100623375..100623425,-!p1@ZIC5!0.92!7.39!ZIC5;;chr1:214161619..214161629,+!p5@PROX1!0.92!7.39!PROX1;;chr17:46806016..46806029,-!p5@HOXB13!0.92!7.39!HOXB13;;chr17:7590797..7590815,-!p1@TP53!0.91!324.66!TP53;;chr12:52445218..52445237,+!p1@NR4A1!0.90!92.51!NR4A1;;chr1:170632647..170632659,+!p17@PRRX1!0.90!7.03!PRRX1;;chr9:96717629..96717644,-!p1@BARX1!0.90!7.03!BARX1;;chr12:54366975..54367001,+!p1@HOXC11!0.90!6.86!HOXC11;;chr13:100638100..100638115,+!p4@ZIC2!0.90!6.86!ZIC2;;chr17:48072574..48072597,-!p1@DLX3!0.90!6.86!DLX3;;chr12:26277817..26277863,-!p2@BHLHE41!0.89!9.32!BHLHE41;;chr16:49891694..49891706,-!p10@ZNF423!0.88!6.51!ZNF423;;chr2:176033066..176033087,-!p2@ATF2!0.87!8.44!ATF2;;chr8:71053689..71053698,-!p31@NCOA2!0.87!6.33!NCOA2;;chr8:37553261..37553282,+!p2@ZNF703!0.86!50.30!ZNF703;;chr9:14314131..14314147,-!p2@NFIB!0.86!36.58!NFIB;;chr13:37494365..37494381,-!p1@SMAD9!0.86!11.08!SMAD9;;chr12:57914286..57914304,-!p1@DDIT3!0.85!236.55!DDIT3;;chr22:19748231..19748317,+!p1@TBX1!0.85!6.16!TBX1;;chr17:38256877..38256900,-!p2@NR1D1!0.84!20.23!NR1D1;;chr2:113993052..113993097,-!p2@PAX8!0.84!13.89!PAX8;;chr21:34144157..34144175,-!p3@GCFC1!0.84!9.85!GCFC1;;chr15:76629097..76629120,+!p2@ISL2!0.84!6.68!ISL2;;chr10:119302352..119302362,+!p9@EMX2!0.84!5.98!EMX2;;chr5:172483347..172483407,+!p1@C5orf41!0.83!46.25!CREBRF;;chr6:31515311..31515330,+!p3@NFKBIL1!0.83!8.44!NFKBIL1;;chr6:10412392..10412409,-!p4@TFAP2A!0.83!6.68!TFAP2A;;chr17:46806067..46806097,-!p1@HOXB13!0.83!5.80!HOXB13;;chr1:3569135..3569150,+!p3@TP73!0.83!5.80!TP73;;chr7:150974206..150974255,-!p1@SMARCD3!0.82!37.81!SMARCD3;;chr20:47894936..47895010,-!p2@ZNFX1!0.82!18.99!ZNFX1;;chr15:96874927..96874938,+!p8@NR2F2!0.82!12.49!NR2F2;;chr9:132427972..132428056,+!p1@PRRX2!0.82!7.56!PRRX2;;chr16:8963020..8963054,-!p6@CARHSP1!0.82!5.63!CARHSP1;;chr17:46667594..46667619,-!p1@HOXB3!0.82!5.63!HOXB3;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.63!SOX11;;chr19:45971246..45971265,+!p1@FOSB!0.81!110.27!FOSB;;chr6:122720681..122720713,+!p3@HSF2!0.81!6.86!HSF2;;chr11:16629369..16629392,-!p5@SOX6!0.81!5.45!SOX6;;chr12:54393880..54393962,+!p1@HOXC9!0.81!5.45!HOXC9;;chr19:13134457..13134462,+!p5@NFIX!0.80!9.85!NFIX;;chr12:125003087..125003141,-!p4@NCOR2!0.80!7.03!NCOR2;;chr12:54785054..54785072,-!p4@ZNF385A!0.80!6.16!ZNF385A;;chr3:21792631..21792665,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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/peripheral%2520neuroectodermal%2520tumor%2520cell%2520line%253aKU-SN.CNhs11830.10697-109G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10697-109G4
 |is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346
 |is_obsolete=
 |library_id=CNhs11830
-|library_ids=CNhs11830
+|library_id_phase_based=2:CNhs11830
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10697
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10697
 |name=peripheral neuroectodermal tumor cell line:KU-SN
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11830,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10697-109G4;search_select_hide=table117:FF:10697-109G4
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FF:10697-109G4: Difference between revisions

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Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0