FF:10699-109G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004764 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007820;DRR008692;DRZ000117;DRZ001502;DRZ011467;DRZ012852 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692,DOID:9119 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aM-MOK.CNhs13049.10699-109G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10699-109G6 | |id=FF:10699-109G6 | ||
|is_a=DOID:9119;;EFO:0002091;;FF: | |is_a=DOID:9119;;EFO:0002091;;FF:0000210;;FF:0101883 | ||
|is_obsolete= | |||
|library_id=CNhs13049 | |||
|library_id_phase_based=2:CNhs13049 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10699 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10699 | |||
|name=acute myeloid leukemia (FAB M7) cell line:M-MOK | |name=acute myeloid leukemia (FAB M7) cell line:M-MOK | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13049,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13049,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.0904786640658477,0.3796269897609,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.0268956998529496,0,0,0.234825564156042,0,0,0,0,0,0,0,0,0,0,0,0,0.00499814725199135,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.00731754653534594,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0261288986840613,0,0,0.0387126063317958,0,0,0,-0.0772520050377425,0.124853596121007,0,0,0.0716028105596136,0.281288264475417,0,0,0,0,-0.0980353512377064,0.185269752180312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0339467958619575,0,0,0,0,-0.0288156209558155,0,0,0,0,0,0 | |||
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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=42.91218 | |rna_weight_ug=42.91218 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2534 | |sample_cell_catalog=RCB2534 | ||
|sample_cell_line=M-MOK | |sample_cell_line=M-MOK | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.04502025562474e-265!GO:0043227;membrane-bound organelle;1.77151267341327e-237!GO:0043231;intracellular membrane-bound organelle;9.18155961508736e-237!GO:0043226;organelle;6.74011413827031e-226!GO:0043229;intracellular organelle;4.54252767917329e-225!GO:0044422;organelle part;3.31356111230626e-161!GO:0044446;intracellular organelle part;2.54022745788737e-159!GO:0005737;cytoplasm;3.40595362967978e-151!GO:0005634;nucleus;1.06868605378953e-129!GO:0044237;cellular metabolic process;9.94983819632839e-116!GO:0044238;primary metabolic process;3.5235359611646e-113!GO:0032991;macromolecular complex;7.18019160117293e-110!GO:0043170;macromolecule metabolic process;1.43252452770815e-108!GO:0044428;nuclear part;1.07048140688592e-104!GO:0044444;cytoplasmic part;3.2378164534885e-104!GO:0043233;organelle lumen;3.97454550897355e-92!GO:0031974;membrane-enclosed lumen;3.97454550897355e-92!GO:0030529;ribonucleoprotein complex;7.33855715475054e-89!GO:0003723;RNA binding;2.27727494324218e-86!GO:0043283;biopolymer metabolic process;3.85997687854272e-75!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.20913244147138e-71!GO:0005739;mitochondrion;5.55223573872925e-68!GO:0031981;nuclear lumen;5.62555494533972e-65!GO:0010467;gene expression;2.14281719722612e-64!GO:0006396;RNA processing;2.8937693078485e-64!GO:0005515;protein binding;1.16300413303108e-62!GO:0043234;protein complex;1.48780692942807e-55!GO:0006259;DNA metabolic process;2.93122120083436e-54!GO:0016071;mRNA metabolic process;2.86782429669442e-52!GO:0006412;translation;1.12200632436884e-50!GO:0003676;nucleic acid binding;3.97659418874337e-49!GO:0019538;protein metabolic process;9.95298096039195e-48!GO:0005840;ribosome;1.62348226406289e-45!GO:0008380;RNA splicing;2.51425229651195e-45!GO:0044429;mitochondrial part;4.52891439247617e-45!GO:0006397;mRNA processing;2.68383984344232e-44!GO:0016043;cellular component organization and biogenesis;4.50056157399517e-44!GO:0031090;organelle membrane;6.94608705019193e-44!GO:0031967;organelle envelope;7.14701590219244e-44!GO:0044267;cellular protein metabolic process;9.89606107640625e-44!GO:0031975;envelope;1.5984444719673e-43!GO:0044260;cellular macromolecule metabolic process;5.69076626344371e-43!GO:0005654;nucleoplasm;5.83778270834641e-41!GO:0033036;macromolecule localization;8.08130038496292e-41!GO:0006996;organelle organization and biogenesis;1.67477254060543e-40!GO:0009058;biosynthetic process;5.53325504126692e-39!GO:0003735;structural constituent of ribosome;5.68464076192732e-39!GO:0007049;cell cycle;5.87469011365957e-39!GO:0015031;protein transport;6.73147914295081e-39!GO:0009059;macromolecule biosynthetic process;2.55433101453953e-38!GO:0044249;cellular biosynthetic process;1.59529807574125e-37!GO:0043228;non-membrane-bound organelle;1.03058775209042e-36!GO:0043232;intracellular non-membrane-bound organelle;1.03058775209042e-36!GO:0065003;macromolecular complex assembly;2.08137421486547e-36!GO:0016070;RNA metabolic process;2.39383023126536e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.67431516085484e-36!GO:0008104;protein localization;2.07761477248352e-35!GO:0045184;establishment of protein localization;2.42887191833456e-35!GO:0000166;nucleotide binding;2.3328026954783e-34!GO:0033279;ribosomal subunit;2.79971669108849e-33!GO:0022402;cell cycle process;3.41750191202128e-33!GO:0005681;spliceosome;7.41365973142061e-33!GO:0022607;cellular component assembly;1.65591908041676e-32!GO:0044451;nucleoplasm part;1.32999994126949e-31!GO:0005694;chromosome;1.45181675902895e-31!GO:0046907;intracellular transport;1.86750551476124e-31!GO:0006974;response to DNA damage stimulus;3.28885018928247e-31!GO:0005829;cytosol;7.564391151061e-31!GO:0005740;mitochondrial envelope;2.34624725623565e-29!GO:0019866;organelle inner membrane;1.7560276420478e-28!GO:0044427;chromosomal part;1.85359447943057e-28!GO:0000278;mitotic cell cycle;6.42712211717923e-28!GO:0051276;chromosome organization and biogenesis;1.03138701917252e-27!GO:0006886;intracellular protein transport;1.40950115438001e-27!GO:0006281;DNA repair;7.26720116639489e-27!GO:0031966;mitochondrial membrane;9.34574105206249e-27!GO:0005743;mitochondrial inner membrane;1.45517546620298e-25!GO:0005730;nucleolus;1.61116962310648e-25!GO:0022403;cell cycle phase;1.28905261476647e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.26982969053038e-24!GO:0006260;DNA replication;9.95311027628002e-23!GO:0005524;ATP binding;1.29763073150668e-22!GO:0032553;ribonucleotide binding;1.45508061625318e-22!GO:0032555;purine ribonucleotide binding;1.45508061625318e-22!GO:0051649;establishment of cellular localization;1.70853184177261e-22!GO:0032559;adenyl ribonucleotide binding;1.71095307433584e-22!GO:0016462;pyrophosphatase activity;3.2370558623042e-22!GO:0009719;response to endogenous stimulus;3.28490621536799e-22!GO:0017076;purine nucleotide binding;3.63255224774304e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.24804692527991e-22!GO:0051641;cellular localization;4.64867012752962e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;4.75400706261304e-22!GO:0017111;nucleoside-triphosphatase activity;4.81769710424532e-22!GO:0000087;M phase of mitotic cell cycle;4.91767368403719e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;6.1974133390105e-22!GO:0030554;adenyl nucleotide binding;7.93009588689817e-22!GO:0007067;mitosis;1.38770557823276e-21!GO:0051301;cell division;3.51084302355591e-21!GO:0006323;DNA packaging;4.04481824361064e-21!GO:0016874;ligase activity;4.24504422295084e-21!GO:0006119;oxidative phosphorylation;8.85194265132259e-21!GO:0044445;cytosolic part;1.43958819101071e-20!GO:0000279;M phase;1.53674362611272e-20!GO:0044455;mitochondrial membrane part;1.8741775848267e-20!GO:0022618;protein-RNA complex assembly;2.65836284590413e-20!GO:0031980;mitochondrial lumen;3.81030926586121e-20!GO:0005759;mitochondrial matrix;3.81030926586121e-20!GO:0016887;ATPase activity;1.15643923984075e-19!GO:0006512;ubiquitin cycle;2.94064644368773e-19!GO:0016604;nuclear body;4.17728085334933e-19!GO:0006457;protein folding;5.70510132921854e-19!GO:0042623;ATPase activity, coupled;5.84639430588e-19!GO:0051726;regulation of cell cycle;1.12625332929124e-17!GO:0015934;large ribosomal subunit;2.43610292082798e-17!GO:0012505;endomembrane system;3.35616525971875e-17!GO:0043412;biopolymer modification;4.40417451891626e-17!GO:0000074;regulation of progression through cell cycle;4.73588310529747e-17!GO:0015935;small ribosomal subunit;9.39202898099658e-17!GO:0031965;nuclear membrane;1.91519296598637e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;2.8988362897845e-16!GO:0000375;RNA splicing, via transesterification reactions;2.8988362897845e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.8988362897845e-16!GO:0044453;nuclear membrane part;3.62396031236266e-16!GO:0004386;helicase activity;5.2673224043519e-16!GO:0042254;ribosome biogenesis and assembly;5.56906894720456e-16!GO:0000785;chromatin;1.60572056936135e-15!GO:0005635;nuclear envelope;2.36995613664444e-15!GO:0005746;mitochondrial respiratory chain;2.62464223284203e-15!GO:0044265;cellular macromolecule catabolic process;3.30457295156476e-15!GO:0016607;nuclear speck;4.02803881243903e-15!GO:0016568;chromatin modification;4.31427439979625e-15!GO:0006605;protein targeting;1.3345800023385e-14!GO:0006403;RNA localization;1.44126324338898e-14!GO:0050657;nucleic acid transport;1.44126324338898e-14!GO:0051236;establishment of RNA localization;1.44126324338898e-14!GO:0050658;RNA transport;1.44126324338898e-14!GO:0006464;protein modification process;1.47311995590213e-14!GO:0008134;transcription factor binding;1.59541911259375e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.39168660070203e-14!GO:0003954;NADH dehydrogenase activity;3.39168660070203e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.39168660070203e-14!GO:0008135;translation factor activity, nucleic acid binding;4.34724672624476e-14!GO:0008026;ATP-dependent helicase activity;4.34724672624476e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.39803068093984e-14!GO:0005643;nuclear pore;5.89465271494118e-14!GO:0043285;biopolymer catabolic process;1.68654970274504e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.89276363610604e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.96777250673161e-13!GO:0043687;post-translational protein modification;2.35375649457368e-13!GO:0019941;modification-dependent protein catabolic process;2.46157360501532e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.46157360501532e-13!GO:0048770;pigment granule;2.46157360501532e-13!GO:0042470;melanosome;2.46157360501532e-13!GO:0044257;cellular protein catabolic process;4.65710110998278e-13!GO:0006446;regulation of translational initiation;6.28693611731306e-13!GO:0051186;cofactor metabolic process;7.11154719120896e-13!GO:0051082;unfolded protein binding;7.11154719120896e-13!GO:0044248;cellular catabolic process;9.56699318094653e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.30009674728596e-12!GO:0042773;ATP synthesis coupled electron transport;1.30009674728596e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.75649392135897e-12!GO:0045271;respiratory chain complex I;1.75649392135897e-12!GO:0005747;mitochondrial respiratory chain complex I;1.75649392135897e-12!GO:0006333;chromatin assembly or disassembly;1.88472861447755e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.11902732906204e-12!GO:0006913;nucleocytoplasmic transport;2.30302777953019e-12!GO:0006413;translational initiation;2.40011141869198e-12!GO:0046930;pore complex;2.45108846636622e-12!GO:0051028;mRNA transport;2.61045101766187e-12!GO:0009057;macromolecule catabolic process;3.01459726458392e-12!GO:0048193;Golgi vesicle transport;3.01459726458392e-12!GO:0006399;tRNA metabolic process;3.21962016896558e-12!GO:0005761;mitochondrial ribosome;3.46569611867482e-12!GO:0000313;organellar ribosome;3.46569611867482e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.79347999462861e-12!GO:0051169;nuclear transport;4.53014681739078e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.92210191092558e-12!GO:0043566;structure-specific DNA binding;6.05027912403907e-12!GO:0065004;protein-DNA complex assembly;7.16710085633773e-12!GO:0006261;DNA-dependent DNA replication;1.07760847089359e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.3314002304508e-11!GO:0006364;rRNA processing;1.38772879452672e-11!GO:0003743;translation initiation factor activity;1.65717608386534e-11!GO:0050794;regulation of cellular process;1.84876441955355e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.88951991432063e-11!GO:0003697;single-stranded DNA binding;2.27820538914043e-11!GO:0016072;rRNA metabolic process;2.876462752784e-11!GO:0065002;intracellular protein transport across a membrane;2.90238103334523e-11!GO:0019222;regulation of metabolic process;3.9531471456706e-11!GO:0006732;coenzyme metabolic process;7.61506519377127e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.10103842048103e-10!GO:0044432;endoplasmic reticulum part;1.15848802360403e-10!GO:0006366;transcription from RNA polymerase II promoter;1.21849943768197e-10!GO:0000775;chromosome, pericentric region;1.24492561123713e-10!GO:0005819;spindle;1.63044723674117e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.65980203210978e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.65980203210978e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.65980203210978e-10!GO:0006163;purine nucleotide metabolic process;5.53426605055815e-10!GO:0008639;small protein conjugating enzyme activity;6.33542156292206e-10!GO:0005783;endoplasmic reticulum;6.42435185277121e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.44209813502628e-10!GO:0009259;ribonucleotide metabolic process;6.52085823336137e-10!GO:0003712;transcription cofactor activity;7.11039905459157e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.19131708700083e-10!GO:0008565;protein transporter activity;1.11457576771199e-09!GO:0017038;protein import;1.12153453648887e-09!GO:0030163;protein catabolic process;1.2444609900428e-09!GO:0043038;amino acid activation;1.35101306174692e-09!GO:0006418;tRNA aminoacylation for protein translation;1.35101306174692e-09!GO:0043039;tRNA aminoacylation;1.35101306174692e-09!GO:0016192;vesicle-mediated transport;1.5150311902898e-09!GO:0006164;purine nucleotide biosynthetic process;1.66254221130841e-09!GO:0016740;transferase activity;1.68430738708576e-09!GO:0006461;protein complex assembly;1.7830286022248e-09!GO:0004842;ubiquitin-protein ligase activity;1.939832432459e-09!GO:0012501;programmed cell death;1.94085647097309e-09!GO:0006915;apoptosis;2.42704660562082e-09!GO:0031323;regulation of cellular metabolic process;3.23157501935979e-09!GO:0016779;nucleotidyltransferase activity;3.75558443648063e-09!GO:0005794;Golgi apparatus;3.76417461001895e-09!GO:0009260;ribonucleotide biosynthetic process;3.88723676388444e-09!GO:0016310;phosphorylation;3.97117799529738e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.80449872100754e-09!GO:0019787;small conjugating protein ligase activity;5.84577544405689e-09!GO:0051329;interphase of mitotic cell cycle;6.42433906615567e-09!GO:0009150;purine ribonucleotide metabolic process;7.65571778439592e-09!GO:0006793;phosphorus metabolic process;7.65571778439592e-09!GO:0006796;phosphate metabolic process;7.65571778439592e-09!GO:0008219;cell death;1.34026524512887e-08!GO:0016265;death;1.34026524512887e-08!GO:0051325;interphase;1.48701658994579e-08!GO:0019829;cation-transporting ATPase activity;2.04261673463635e-08!GO:0031497;chromatin assembly;2.20478887614167e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.37875841992515e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.4008400756175e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.52312567853797e-08!GO:0051188;cofactor biosynthetic process;2.91655152974371e-08!GO:0006350;transcription;2.96060612915802e-08!GO:0006334;nucleosome assembly;2.99789272755641e-08!GO:0051246;regulation of protein metabolic process;3.18856660076925e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.63270337713903e-08!GO:0005789;endoplasmic reticulum membrane;8.30782830728824e-08!GO:0000245;spliceosome assembly;1.32253538525068e-07!GO:0032446;protein modification by small protein conjugation;1.32345820020465e-07!GO:0015986;ATP synthesis coupled proton transport;1.45262809169187e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.45262809169187e-07!GO:0016881;acid-amino acid ligase activity;1.51016155549274e-07!GO:0005813;centrosome;1.52548004324095e-07!GO:0008094;DNA-dependent ATPase activity;1.59634206859636e-07!GO:0003690;double-stranded DNA binding;1.92736626589256e-07!GO:0005815;microtubule organizing center;2.08589532338772e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.15040132836604e-07!GO:0015630;microtubule cytoskeleton;2.21900562450812e-07!GO:0050789;regulation of biological process;2.77003583395093e-07!GO:0006310;DNA recombination;2.86375769753081e-07!GO:0045786;negative regulation of progression through cell cycle;2.95146230724798e-07!GO:0000075;cell cycle checkpoint;3.10752590603621e-07!GO:0007051;spindle organization and biogenesis;3.83833693778289e-07!GO:0005657;replication fork;4.04733596629579e-07!GO:0010468;regulation of gene expression;4.32603629938771e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.52543453299938e-07!GO:0016567;protein ubiquitination;5.27893694504916e-07!GO:0009141;nucleoside triphosphate metabolic process;5.52137430071957e-07!GO:0005667;transcription factor complex;5.67639577455514e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.96678885980277e-07!GO:0003899;DNA-directed RNA polymerase activity;6.14127082676659e-07!GO:0003724;RNA helicase activity;6.44371213874007e-07!GO:0006752;group transfer coenzyme metabolic process;6.44574438306336e-07!GO:0046034;ATP metabolic process;6.66244437812555e-07!GO:0006754;ATP biosynthetic process;7.32278473095627e-07!GO:0006753;nucleoside phosphate metabolic process;7.32278473095627e-07!GO:0003677;DNA binding;8.396217413259e-07!GO:0007005;mitochondrion organization and biogenesis;9.25001507340029e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.51511419801643e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.51511419801643e-07!GO:0009056;catabolic process;1.04898684693094e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.07692191156322e-06!GO:0016787;hydrolase activity;1.08814078188114e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.14543699693685e-06!GO:0006302;double-strand break repair;1.18976546784276e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.22506831084675e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.22506831084675e-06!GO:0009108;coenzyme biosynthetic process;1.37602268592538e-06!GO:0045259;proton-transporting ATP synthase complex;1.53288159679826e-06!GO:0003729;mRNA binding;1.89100405763656e-06!GO:0000151;ubiquitin ligase complex;1.98573149470667e-06!GO:0016363;nuclear matrix;1.99155180222738e-06!GO:0006606;protein import into nucleus;2.00480483785004e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.05104932138928e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.05104932138928e-06!GO:0051168;nuclear export;2.1739708127832e-06!GO:0009055;electron carrier activity;2.17880649546936e-06!GO:0007088;regulation of mitosis;2.68183404526727e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.78115371319882e-06!GO:0051170;nuclear import;2.87272692094586e-06!GO:0003713;transcription coactivator activity;2.93338616933029e-06!GO:0032774;RNA biosynthetic process;3.97911818142701e-06!GO:0000776;kinetochore;4.1660094983494e-06!GO:0009117;nucleotide metabolic process;5.20832515292791e-06!GO:0048523;negative regulation of cellular process;5.21684147984823e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.23572805076934e-06!GO:0006351;transcription, DNA-dependent;5.37287634234659e-06!GO:0009060;aerobic respiration;5.58707688041594e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.99453471409367e-06!GO:0006402;mRNA catabolic process;7.70553798106589e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.07264296650028e-06!GO:0008168;methyltransferase activity;9.52759481973436e-06!GO:0007059;chromosome segregation;9.61074121536771e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.03742912931906e-05!GO:0031324;negative regulation of cellular metabolic process;1.15431661033933e-05!GO:0019899;enzyme binding;1.20923397871001e-05!GO:0003682;chromatin binding;1.3752470299408e-05!GO:0043623;cellular protein complex assembly;1.6477149361422e-05!GO:0044452;nucleolar part;1.77368434692025e-05!GO:0006401;RNA catabolic process;2.20471658070983e-05!GO:0005768;endosome;2.38304969620921e-05!GO:0003684;damaged DNA binding;2.43495766273976e-05!GO:0003678;DNA helicase activity;2.44581328023405e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.60609640020459e-05!GO:0045333;cellular respiration;2.97656766671064e-05!GO:0006613;cotranslational protein targeting to membrane;3.01991123305037e-05!GO:0048475;coated membrane;3.02050206610983e-05!GO:0030117;membrane coat;3.02050206610983e-05!GO:0008186;RNA-dependent ATPase activity;3.9318514093295e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.28826093998621e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;4.31185360384791e-05!GO:0006084;acetyl-CoA metabolic process;4.56744741864042e-05!GO:0016563;transcription activator activity;4.6864568804578e-05!GO:0006405;RNA export from nucleus;4.79503797095385e-05!GO:0005793;ER-Golgi intermediate compartment;4.79503797095385e-05!GO:0051052;regulation of DNA metabolic process;4.84283103822393e-05!GO:0045449;regulation of transcription;5.40205007794517e-05!GO:0005762;mitochondrial large ribosomal subunit;5.62681698846943e-05!GO:0000315;organellar large ribosomal subunit;5.62681698846943e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.84084676711195e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.10803826878272e-05!GO:0015399;primary active transmembrane transporter activity;6.10803826878272e-05!GO:0006099;tricarboxylic acid cycle;6.62148020026902e-05!GO:0046356;acetyl-CoA catabolic process;6.62148020026902e-05!GO:0006338;chromatin remodeling;7.03722604064679e-05!GO:0009892;negative regulation of metabolic process;7.53325633758632e-05!GO:0016564;transcription repressor activity;7.6897919829499e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.6897919829499e-05!GO:0000922;spindle pole;8.33589085205083e-05!GO:0048519;negative regulation of biological process;8.53514658929101e-05!GO:0007093;mitotic cell cycle checkpoint;9.0056608878227e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.35781182877264e-05!GO:0042981;regulation of apoptosis;9.49688286549003e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.76248869471965e-05!GO:0043067;regulation of programmed cell death;0.000108813477589655!GO:0006950;response to stress;0.000112274181456523!GO:0004298;threonine endopeptidase activity;0.000120513520696193!GO:0000786;nucleosome;0.000121407945966732!GO:0004004;ATP-dependent RNA helicase activity;0.000126957426035152!GO:0043021;ribonucleoprotein binding;0.000135071664648759!GO:0030120;vesicle coat;0.000136304101681341!GO:0030662;coated vesicle membrane;0.000136304101681341!GO:0006270;DNA replication initiation;0.000149085579989626!GO:0044440;endosomal part;0.000149999868023088!GO:0010008;endosome membrane;0.000149999868023088!GO:0006352;transcription initiation;0.000157159045436487!GO:0051427;hormone receptor binding;0.000160736388079188!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000162742710350692!GO:0007006;mitochondrial membrane organization and biogenesis;0.000188552093281726!GO:0006383;transcription from RNA polymerase III promoter;0.000197798700360609!GO:0051252;regulation of RNA metabolic process;0.000202842618170046!GO:0032508;DNA duplex unwinding;0.000225876761241402!GO:0032392;DNA geometric change;0.000225876761241402!GO:0030880;RNA polymerase complex;0.000227403841988561!GO:0007052;mitotic spindle organization and biogenesis;0.00027181132728873!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000289139687997964!GO:0006414;translational elongation;0.000295155501425613!GO:0008033;tRNA processing;0.000306341972594882!GO:0065007;biological regulation;0.000310349783507742!GO:0009165;nucleotide biosynthetic process;0.000314744048849762!GO:0044431;Golgi apparatus part;0.000316991845894075!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000323828482220986!GO:0035257;nuclear hormone receptor binding;0.000327354924120403!GO:0009109;coenzyme catabolic process;0.000332299550589042!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000332299550589042!GO:0043492;ATPase activity, coupled to movement of substances;0.00034431435640912!GO:0045454;cell redox homeostasis;0.000344687756496795!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000370002419898972!GO:0005788;endoplasmic reticulum lumen;0.000373928253411009!GO:0043681;protein import into mitochondrion;0.000373928253411009!GO:0046483;heterocycle metabolic process;0.000379917247815932!GO:0016481;negative regulation of transcription;0.000391438010655757!GO:0008654;phospholipid biosynthetic process;0.000408538949513104!GO:0005770;late endosome;0.000447200629789238!GO:0006268;DNA unwinding during replication;0.000462352739224543!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000471055794455422!GO:0004527;exonuclease activity;0.000484077373680237!GO:0000228;nuclear chromosome;0.000486020082125845!GO:0006355;regulation of transcription, DNA-dependent;0.000489007679383486!GO:0005885;Arp2/3 protein complex;0.000512388910311619!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000522536652400735!GO:0000082;G1/S transition of mitotic cell cycle;0.000526361884880346!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000528314433956116!GO:0016859;cis-trans isomerase activity;0.000528656275807389!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00054036517754508!GO:0000428;DNA-directed RNA polymerase complex;0.00054036517754508!GO:0047485;protein N-terminus binding;0.000541899133910478!GO:0042393;histone binding;0.00055025758641295!GO:0019752;carboxylic acid metabolic process;0.000558938644893469!GO:0006082;organic acid metabolic process;0.000563691654777997!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000571765213628701!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000589606224339102!GO:0006284;base-excision repair;0.000628348886743138!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000647155025063117!GO:0031252;leading edge;0.000691747637520465!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000705535438961828!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000720774254947877!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000768600047479065!GO:0004674;protein serine/threonine kinase activity;0.000780812055184439!GO:0022890;inorganic cation transmembrane transporter activity;0.00078838970572669!GO:0000314;organellar small ribosomal subunit;0.000918790122339268!GO:0005763;mitochondrial small ribosomal subunit;0.000918790122339268!GO:0006417;regulation of translation;0.00100558744039628!GO:0005637;nuclear inner membrane;0.00103735936398618!GO:0019867;outer membrane;0.00105209491379181!GO:0000059;protein import into nucleus, docking;0.00109384545120333!GO:0031968;organelle outer membrane;0.00116080937763973!GO:0005048;signal sequence binding;0.00116159244437639!GO:0031072;heat shock protein binding;0.00118812500373274!GO:0005684;U2-dependent spliceosome;0.00120450860108375!GO:0000049;tRNA binding;0.00126003671287792!GO:0032200;telomere organization and biogenesis;0.00142535535117904!GO:0000723;telomere maintenance;0.00142535535117904!GO:0051087;chaperone binding;0.00142934064523873!GO:0003711;transcription elongation regulator activity;0.00148746687015402!GO:0000792;heterochromatin;0.00149581327032937!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00149581327032937!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00149581327032937!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00149581327032937!GO:0006839;mitochondrial transport;0.00149689356740022!GO:0004518;nuclease activity;0.00155044987627942!GO:0007243;protein kinase cascade;0.0015695536673479!GO:0000139;Golgi membrane;0.00160329688376381!GO:0043488;regulation of mRNA stability;0.00165654155457598!GO:0043487;regulation of RNA stability;0.00165654155457598!GO:0006612;protein targeting to membrane;0.00168159130126579!GO:0006520;amino acid metabolic process;0.00172366034762136!GO:0031988;membrane-bound vesicle;0.00172366034762136!GO:0048471;perinuclear region of cytoplasm;0.00173572541022126!GO:0000819;sister chromatid segregation;0.00175093510155367!GO:0006818;hydrogen transport;0.00175093510155367!GO:0015992;proton transport;0.00175093510155367!GO:0043069;negative regulation of programmed cell death;0.00175685485702716!GO:0006275;regulation of DNA replication;0.00180154508865199!GO:0005741;mitochondrial outer membrane;0.00192945963468239!GO:0006289;nucleotide-excision repair;0.00192945963468239!GO:0051187;cofactor catabolic process;0.00205825696247564!GO:0016197;endosome transport;0.00208890653209052!GO:0016853;isomerase activity;0.00216092654695576!GO:0048500;signal recognition particle;0.00216941488966898!GO:0043066;negative regulation of apoptosis;0.00217458039641157!GO:0045045;secretory pathway;0.0021820213916097!GO:0000070;mitotic sister chromatid segregation;0.0022162254221426!GO:0005769;early endosome;0.00232736979987328!GO:0006626;protein targeting to mitochondrion;0.00234297195158811!GO:0008139;nuclear localization sequence binding;0.00238715888085615!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00238739586086036!GO:0044454;nuclear chromosome part;0.00244333272998949!GO:0009112;nucleobase metabolic process;0.00246248080410312!GO:0031982;vesicle;0.00249045926390476!GO:0004003;ATP-dependent DNA helicase activity;0.00253607941625203!GO:0004576;oligosaccharyl transferase activity;0.00260425763238206!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00276120069688904!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00284277826673581!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00284277826673581!GO:0000725;recombinational repair;0.00291633735709997!GO:0000724;double-strand break repair via homologous recombination;0.00291633735709997!GO:0031124;mRNA 3'-end processing;0.00292518639821285!GO:0009081;branched chain family amino acid metabolic process;0.00292614827792394!GO:0006916;anti-apoptosis;0.00304362024724441!GO:0016251;general RNA polymerase II transcription factor activity;0.00308606946681238!GO:0018193;peptidyl-amino acid modification;0.00308606946681238!GO:0007050;cell cycle arrest;0.00323500634798245!GO:0006406;mRNA export from nucleus;0.00324025417651489!GO:0005798;Golgi-associated vesicle;0.00325681373511471!GO:0003714;transcription corepressor activity;0.0032788070582719!GO:0035258;steroid hormone receptor binding;0.00331720872993518!GO:0030384;phosphoinositide metabolic process;0.00341758904411392!GO:0008250;oligosaccharyl transferase complex;0.00348210116913841!GO:0008312;7S RNA binding;0.00360273375911933!GO:0008276;protein methyltransferase activity;0.00373472621879511!GO:0006607;NLS-bearing substrate import into nucleus;0.00382996624059714!GO:0006091;generation of precursor metabolites and energy;0.00392144417876446!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00394130537687535!GO:0043596;nuclear replication fork;0.00396328822863012!GO:0065009;regulation of a molecular function;0.00400972728581674!GO:0030521;androgen receptor signaling pathway;0.0042645305508501!GO:0006891;intra-Golgi vesicle-mediated transport;0.00429290919535016!GO:0006892;post-Golgi vesicle-mediated transport;0.00429290919535016!GO:0016584;nucleosome positioning;0.00453884817552484!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00455213036865392!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00457926456298615!GO:0005876;spindle microtubule;0.0045948470615902!GO:0019904;protein domain specific binding;0.00478949265224041!GO:0016023;cytoplasmic membrane-bound vesicle;0.0048487018093758!GO:0046474;glycerophospholipid biosynthetic process;0.00499956739270934!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00509231873052098!GO:0008270;zinc ion binding;0.00525590098715842!GO:0000096;sulfur amino acid metabolic process;0.00545005899773719!GO:0006144;purine base metabolic process;0.00562992343628304!GO:0030041;actin filament polymerization;0.00573315461525765!GO:0043414;biopolymer methylation;0.00575968658709632!GO:0051053;negative regulation of DNA metabolic process;0.00579522571264704!GO:0008610;lipid biosynthetic process;0.00595718908521539!GO:0032259;methylation;0.00600260525846857!GO:0006595;polyamine metabolic process;0.00605658168170499!GO:0018196;peptidyl-asparagine modification;0.00605658168170499!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00605658168170499!GO:0042770;DNA damage response, signal transduction;0.00618143531253828!GO:0031326;regulation of cellular biosynthetic process;0.00634683064244804!GO:0008632;apoptotic program;0.00634683064244804!GO:0003725;double-stranded RNA binding;0.00643809496510965!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00655027336018547!GO:0045047;protein targeting to ER;0.00655027336018547!GO:0006611;protein export from nucleus;0.00661508589304654!GO:0003924;GTPase activity;0.00668354043625183!GO:0005525;GTP binding;0.00671241791527554!GO:0009451;RNA modification;0.00676622668454538!GO:0040029;regulation of gene expression, epigenetic;0.00676622668454538!GO:0031410;cytoplasmic vesicle;0.00684427068672645!GO:0000152;nuclear ubiquitin ligase complex;0.0068678470583748!GO:0016272;prefoldin complex;0.00688402906470383!GO:0006650;glycerophospholipid metabolic process;0.00714613398299032!GO:0005669;transcription factor TFIID complex;0.00717408002953391!GO:0016491;oxidoreductase activity;0.00726152325419739!GO:0031570;DNA integrity checkpoint;0.00730828669722231!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00733746119803029!GO:0031123;RNA 3'-end processing;0.00769673980360763!GO:0043284;biopolymer biosynthetic process;0.00770627896769215!GO:0007017;microtubule-based process;0.0077347398577358!GO:0048487;beta-tubulin binding;0.00820069616867824!GO:0000118;histone deacetylase complex;0.00841249172103295!GO:0006519;amino acid and derivative metabolic process;0.00857736170880016!GO:0016605;PML body;0.0085787946422024!GO:0009303;rRNA transcription;0.0085832856025364!GO:0051539;4 iron, 4 sulfur cluster binding;0.0085832856025364!GO:0006376;mRNA splice site selection;0.00893454058202958!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00893454058202958!GO:0044438;microbody part;0.00928561323738948!GO:0044439;peroxisomal part;0.00928561323738948!GO:0000209;protein polyubiquitination;0.0095979601361226!GO:0009124;nucleoside monophosphate biosynthetic process;0.00960665617180871!GO:0009123;nucleoside monophosphate metabolic process;0.00960665617180871!GO:0044450;microtubule organizing center part;0.0099532232418101!GO:0000781;chromosome, telomeric region;0.0103299712661154!GO:0046489;phosphoinositide biosynthetic process;0.0104622316160744!GO:0045892;negative regulation of transcription, DNA-dependent;0.0106316593636933!GO:0003887;DNA-directed DNA polymerase activity;0.0108820423063038!GO:0051789;response to protein stimulus;0.0108820423063038!GO:0006986;response to unfolded protein;0.0108820423063038!GO:0022415;viral reproductive process;0.0109086138081678!GO:0030518;steroid hormone receptor signaling pathway;0.0110578378837103!GO:0015036;disulfide oxidoreductase activity;0.0115993012151715!GO:0000910;cytokinesis;0.0123032844508965!GO:0016126;sterol biosynthetic process;0.0123648315629928!GO:0022411;cellular component disassembly;0.0124831784280676!GO:0035267;NuA4 histone acetyltransferase complex;0.0126091590491189!GO:0000726;non-recombinational repair;0.0126804592649683!GO:0032984;macromolecular complex disassembly;0.0126804592649683!GO:0019843;rRNA binding;0.0129496034738867!GO:0008629;induction of apoptosis by intracellular signals;0.0131073084443666!GO:0005832;chaperonin-containing T-complex;0.0135377935787148!GO:0000339;RNA cap binding;0.0136152486051481!GO:0009083;branched chain family amino acid catabolic process;0.0137109827840367!GO:0000790;nuclear chromatin;0.0137385922393152!GO:0005758;mitochondrial intermembrane space;0.0144751178788798!GO:0015631;tubulin binding;0.0146401552702892!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0146539694300511!GO:0015002;heme-copper terminal oxidase activity;0.0146539694300511!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0146539694300511!GO:0004129;cytochrome-c oxidase activity;0.0146539694300511!GO:0031903;microbody membrane;0.0146539694300511!GO:0005778;peroxisomal membrane;0.0146539694300511!GO:0000080;G1 phase of mitotic cell cycle;0.0152989741104731!GO:0009116;nucleoside metabolic process;0.0153917918601527!GO:0008287;protein serine/threonine phosphatase complex;0.0154036564670228!GO:0000123;histone acetyltransferase complex;0.0157960154719994!GO:0045815;positive regulation of gene expression, epigenetic;0.0161682167854097!GO:0032940;secretion by cell;0.0163689196362884!GO:0051540;metal cluster binding;0.0163908918722709!GO:0051536;iron-sulfur cluster binding;0.0163908918722709!GO:0000793;condensed chromosome;0.0164133323833433!GO:0030127;COPII vesicle coat;0.0167121995637353!GO:0012507;ER to Golgi transport vesicle membrane;0.0167121995637353!GO:0006378;mRNA polyadenylation;0.0167239053034947!GO:0016566;specific transcriptional repressor activity;0.0167939615189204!GO:0043189;H4/H2A histone acetyltransferase complex;0.0168779784152693!GO:0042802;identical protein binding;0.0171000581485778!GO:0043022;ribosome binding;0.0173053523664691!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0173248547951405!GO:0010257;NADH dehydrogenase complex assembly;0.0173248547951405!GO:0033108;mitochondrial respiratory chain complex assembly;0.0173248547951405!GO:0008022;protein C-terminus binding;0.0177911846115277!GO:0043601;nuclear replisome;0.0178883812563043!GO:0030894;replisome;0.0178883812563043!GO:0006730;one-carbon compound metabolic process;0.0183150821844948!GO:0043241;protein complex disassembly;0.018590249719349!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0187504637868513!GO:0004722;protein serine/threonine phosphatase activity;0.0188296334123292!GO:0050662;coenzyme binding;0.0191885355911016!GO:0005652;nuclear lamina;0.0192885236240887!GO:0000178;exosome (RNase complex);0.0193874559540572!GO:0030663;COPI coated vesicle membrane;0.0199279453714379!GO:0030126;COPI vesicle coat;0.0199279453714379!GO:0030658;transport vesicle membrane;0.020453656219575!GO:0006695;cholesterol biosynthetic process;0.0206121665965671!GO:0032561;guanyl ribonucleotide binding;0.0212599156090931!GO:0019001;guanyl nucleotide binding;0.0212599156090931!GO:0008047;enzyme activator activity;0.0216426409914461!GO:0030118;clathrin coat;0.0218136759417017!GO:0046914;transition metal ion binding;0.0220372677807763!GO:0009161;ribonucleoside monophosphate metabolic process;0.0220739272232686!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0220739272232686!GO:0004523;ribonuclease H activity;0.0221023662460288!GO:0015980;energy derivation by oxidation of organic compounds;0.0226409946361527!GO:0005663;DNA replication factor C complex;0.0229490417123864!GO:0031625;ubiquitin protein ligase binding;0.0235733246437746!GO:0000930;gamma-tubulin complex;0.02398837711339!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0244844607752857!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0246720530070167!GO:0008154;actin polymerization and/or depolymerization;0.0250270873761495!GO:0006740;NADPH regeneration;0.0250270873761495!GO:0006098;pentose-phosphate shunt;0.0250270873761495!GO:0016585;chromatin remodeling complex;0.0252892134021176!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0252892134021176!GO:0051318;G1 phase;0.0252892134021176!GO:0042054;histone methyltransferase activity;0.0253398051993117!GO:0046112;nucleobase biosynthetic process;0.0253398051993117!GO:0031577;spindle checkpoint;0.0254963867618462!GO:0007010;cytoskeleton organization and biogenesis;0.0256599012084087!GO:0008234;cysteine-type peptidase activity;0.0256625182584219!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0261960358559117!GO:0005773;vacuole;0.0269679201531449!GO:0016569;covalent chromatin modification;0.0269679201531449!GO:0008143;poly(A) binding;0.0273087504262494!GO:0007021;tubulin folding;0.0276853010873539!GO:0000077;DNA damage checkpoint;0.0278190962932325!GO:0016408;C-acyltransferase activity;0.0287837678372627!GO:0051297;centrosome organization and biogenesis;0.0287948798383958!GO:0031023;microtubule organizing center organization and biogenesis;0.0287948798383958!GO:0008156;negative regulation of DNA replication;0.0288204888137501!GO:0030137;COPI-coated vesicle;0.0298368137512253!GO:0051656;establishment of organelle localization;0.0300665456099455!GO:0000323;lytic vacuole;0.0304683400657117!GO:0005764;lysosome;0.0304683400657117!GO:0030036;actin cytoskeleton organization and biogenesis;0.0306693241968335!GO:0031647;regulation of protein stability;0.0306693241968335!GO:0008536;Ran GTPase binding;0.0306693241968335!GO:0046467;membrane lipid biosynthetic process;0.0307724507153025!GO:0005680;anaphase-promoting complex;0.0308139644501513!GO:0016407;acetyltransferase activity;0.0309416339139986!GO:0009889;regulation of biosynthetic process;0.0310030621724506!GO:0031902;late endosome membrane;0.0311537164990715!GO:0019783;small conjugating protein-specific protease activity;0.0311537164990715!GO:0030867;rough endoplasmic reticulum membrane;0.0311695622907247!GO:0006301;postreplication repair;0.0314116315837636!GO:0030522;intracellular receptor-mediated signaling pathway;0.0326916382092188!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0327292619932867!GO:0019206;nucleoside kinase activity;0.0328716915944265!GO:0030176;integral to endoplasmic reticulum membrane;0.03305372425672!GO:0043624;cellular protein complex disassembly;0.0338838935367394!GO:0051320;S phase;0.0338838935367394!GO:0008408;3'-5' exonuclease activity;0.0339594194580169!GO:0007004;telomere maintenance via telomerase;0.0339865643340574!GO:0050178;phenylpyruvate tautomerase activity;0.034203746866323!GO:0000097;sulfur amino acid biosynthetic process;0.0344975586746745!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0352817465202298!GO:0006400;tRNA modification;0.0357486520629367!GO:0046426;negative regulation of JAK-STAT cascade;0.0358881280925142!GO:0005874;microtubule;0.0362332121023064!GO:0006555;methionine metabolic process;0.0362425927402653!GO:0005869;dynactin complex;0.0363482930158401!GO:0030119;AP-type membrane coat adaptor complex;0.0363735458720798!GO:0005487;nucleocytoplasmic transporter activity;0.0365753729917829!GO:0050681;androgen receptor binding;0.0366037857392413!GO:0043065;positive regulation of apoptosis;0.0367908522524822!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.036955122391118!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0372153091974334!GO:0004843;ubiquitin-specific protease activity;0.0372843506268758!GO:0006779;porphyrin biosynthetic process;0.0373639857673879!GO:0033014;tetrapyrrole biosynthetic process;0.0373639857673879!GO:0004177;aminopeptidase activity;0.0376636091196281!GO:0017056;structural constituent of nuclear pore;0.0377359042880114!GO:0030660;Golgi-associated vesicle membrane;0.0381180857373681!GO:0008637;apoptotic mitochondrial changes;0.0386517370643276!GO:0000119;mediator complex;0.0395414534280455!GO:0008097;5S rRNA binding;0.0396482317007728!GO:0006635;fatty acid beta-oxidation;0.0400832770472473!GO:0004239;methionyl aminopeptidase activity;0.040432645765948!GO:0046966;thyroid hormone receptor binding;0.0404817399029365!GO:0000287;magnesium ion binding;0.0407501060908431!GO:0016581;NuRD complex;0.0407773366296644!GO:0043068;positive regulation of programmed cell death;0.0407956975374659!GO:0007265;Ras protein signal transduction;0.0412925313119013!GO:0008159;positive transcription elongation factor activity;0.0413825074850574!GO:0051059;NF-kappaB binding;0.0416759085674703!GO:0007264;small GTPase mediated signal transduction;0.0416856895883734!GO:0006917;induction of apoptosis;0.0421146405271765!GO:0016790;thiolester hydrolase activity;0.0424828409842288!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0425127156444146!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0426943657720399!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0426943657720399!GO:0045947;negative regulation of translational initiation;0.0428284176791273!GO:0003746;translation elongation factor activity;0.0428866582632288!GO:0012506;vesicle membrane;0.0433857133616886!GO:0004532;exoribonuclease activity;0.0437420137333225!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0437420137333225!GO:0009396;folic acid and derivative biosynthetic process;0.0441588678448881!GO:0016301;kinase activity;0.0441707058914775!GO:0030911;TPR domain binding;0.0444178874359515!GO:0003893;epsilon DNA polymerase activity;0.0450960791668407!GO:0005689;U12-dependent spliceosome;0.0451247592149556!GO:0005096;GTPase activator activity;0.0464280229718671!GO:0030508;thiol-disulfide exchange intermediate activity;0.0466038295849725!GO:0051640;organelle localization;0.0466038295849725!GO:0030131;clathrin adaptor complex;0.0471282084812535!GO:0001726;ruffle;0.0473844900137666!GO:0005092;GDP-dissociation inhibitor activity;0.0475002894265018!GO:0031371;ubiquitin conjugating enzyme complex;0.0477877655543345!GO:0001832;blastocyst growth;0.0480523800590701!GO:0003709;RNA polymerase III transcription factor activity;0.0480617306807853!GO:0006468;protein amino acid phosphorylation;0.0481700689837385!GO:0006458;'de novo' protein folding;0.0495234670313516!GO:0051084;'de novo' posttranslational protein folding;0.0495234670313516!GO:0016279;protein-lysine N-methyltransferase activity;0.0498393659725015!GO:0018024;histone-lysine N-methyltransferase activity;0.0498393659725015!GO:0016278;lysine N-methyltransferase activity;0.0498393659725015!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0498393659725015 | |||
|sample_id=10699 | |sample_id=10699 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=MYB:2.73116384794;GATA6:2.16722931203;E2F1..5:2.13753207643;ELF1,2,4:1.44802068555;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.43347964389;RXRA_VDR{dimer}:1.32570701426;POU2F1..3:1.28161230594;NFY{A,B,C}:1.22307222392;NANOG{mouse}:1.18015998729;HOXA9_MEIS1:1.14472203894;PAX6:1.14160379317;ZNF143:1.12040700915;ARID5B:1.07475514091;YY1:1.06675879076;STAT1,3:0.988721998564;NR5A1,2:0.90989212722;FOXD3:0.888897657103;TLX2:0.865401194809;STAT5{A,B}:0.84642919577;RUNX1..3:0.844657265328;ZNF148:0.827684189163;IKZF2:0.793874576954;TEF:0.775960745977;NRF1:0.734116966209;POU3F1..4:0.733307123702;TFDP1:0.707232975972;BREu{core}:0.691540471349;TGIF1:0.683134635748;PAX8:0.625065045348;FOXP3:0.599452966631;DMAP1_NCOR{1,2}_SMARC:0.598947399019;PITX1..3:0.585559886301;SPIB:0.571009412989;SOX{8,9,10}:0.562089585612;ELK1,4_GABP{A,B1}:0.550275518843;NANOG:0.533630676417;RBPJ:0.521995394747;FOXN1:0.517588349951;TOPORS:0.493100644063;FOXQ1:0.478991570073;CRX:0.464706900539;NKX2-1,4:0.455865114771;AR:0.446093660598;AIRE:0.430131768382;ETS1,2:0.420858856377;FOXA2:0.417112954049;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.387234000932;SPI1:0.380934673312;CUX2:0.315405957447;ZBTB16:0.293144625474;LEF1_TCF7_TCF7L1,2:0.275222343823;CDX1,2,4:0.26104264512;PPARG:0.237082784793;CREB1:0.215111951263;POU1F1:0.213348205124;VSX1,2:0.199878992174;HAND1,2:0.18403319393;KLF4:0.183369419702;PAX4:0.153892282635;bHLH_family:0.149436609112;HOX{A4,D4}:0.149350329985;NKX2-3_NKX2-5:0.141123657366;XBP1:0.116471794055;TFAP4:0.107233029481;OCT4_SOX2{dimer}:0.102756496526;PRRX1,2:0.101146920612;ZNF384:0.0981934369786;SOX17:0.0784420792464;AHR_ARNT_ARNT2:0.075093021166;SMAD1..7,9:0.052889768341;GCM1,2:0.0521682799531;POU6F1:0.0470386661181;BPTF:0.0375325464542;SOX2:0.0327573023559;EP300:0.0300547706981;PAX3,7:0.0134133939366;FOXP1:-0.000262078452146;RORA:-0.00657464491118;HOX{A5,B5}:-0.0224640055569;HNF4A_NR2F1,2:-0.0227178786363;EVI1:-0.0600424182167;PBX1:-0.0758997144395;NFKB1_REL_RELA:-0.0828855115412;HNF1A:-0.100319574756;EN1,2:-0.106228437198;SNAI1..3:-0.140821984326;MEF2{A,B,C,D}:-0.150008214621;FOX{I1,J2}:-0.160469047711;REST:-0.174264548105;RXR{A,B,G}:-0.186077851179;SOX5:-0.196291596736;NFIX:-0.206234555488;ATF5_CREB3:-0.20634913468;ZIC1..3:-0.218659750549;ONECUT1,2:-0.219367262587;ZNF238:-0.220312157427;IKZF1:-0.220921808971;MZF1:-0.233540480906;DBP:-0.248377985179;HES1:-0.25561231514;ALX1:-0.260891357181;GLI1..3:-0.264376505179;ZFP161:-0.264940662177;MYFfamily:-0.27192053192;PRDM1:-0.277659920083;EGR1..3:-0.295117515477;NKX2-2,8:-0.312010737977;HOX{A6,A7,B6,B7}:-0.357024519011;GTF2I:-0.375468057984;HLF:-0.384650230672;PAX2:-0.393148514054;SPZ1:-0.393780019777;FOX{F1,F2,J1}:-0.401014474037;MED-1{core}:-0.403799070657;GZF1:-0.414229738885;MYOD1:-0.415064542721;ZBTB6:-0.454841040669;SREBF1,2:-0.46533163437;NR6A1:-0.466923912181;NFE2:-0.469431748053;HMGA1,2:-0.481236660772;NKX6-1,2:-0.481949698673;ESR1:-0.483811390987;GATA4:-0.515419040938;GFI1:-0.545087514458;HIC1:-0.545250446441;NFE2L1:-0.546127484946;T:-0.549255839615;NHLH1,2:-0.552073539891;NKX3-1:-0.563840286121;NR1H4:-0.582561676217;FOS_FOS{B,L1}_JUN{B,D}:-0.597945023862;RREB1:-0.614276372481;IRF1,2:-0.614285290459;HBP1_HMGB_SSRP1_UBTF:-0.636325751789;FOSL2:-0.639090967368;ATF4:-0.64478693063;BACH2:-0.646346590802;UFEwm:-0.646594620795;LHX3,4:-0.65825368503;HIF1A:-0.658523936699;PATZ1:-0.659777330573;PAX1,9:-0.667132354993;RFX1:-0.672571018144;NR3C1:-0.672977970158;ESRRA:-0.699116007516;NFE2L2:-0.708408155206;MYBL2:-0.726161620402;TFAP2{A,C}:-0.740114391353;HMX1:-0.740170700806;STAT2,4,6:-0.772531115948;NFATC1..3:-0.774451564085;PAX5:-0.792307547669;ZEB1:-0.793908583158;RFX2..5_RFXANK_RFXAP:-0.811363702453;POU5F1:-0.818380469684;FOXM1:-0.832048981551;NFIL3:-0.838954402112;FOXO1,3,4:-0.855794949794;GTF2A1,2:-0.857868362387;MTE{core}:-0.862129183477;MAZ:-0.904935405265;LMO2:-0.913247018643;IRF7:-0.913792664015;CEBPA,B_DDIT3:-0.915985711757;PDX1:-0.942106774667;EBF1:-0.96484726053;TAL1_TCF{3,4,12}:-0.974474644139;NKX3-2:-0.979128173117;FOX{D1,D2}:-0.9832992815;TP53:-1.01470158451;TEAD1:-1.02158526094;TBP:-1.13259040533;TFAP2B:-1.15730476911;SRF:-1.17338462149;MTF1:-1.25890070443;ATF6:-1.26024658785;GFI1B:-1.27082298727;TLX1..3_NFIC{dimer}:-1.33530921156;ATF2:-1.37641195717;ZNF423:-1.38809694576;MAFB:-1.41269049183;TBX4,5:-1.46385639038;ADNP_IRX_SIX_ZHX:-1.54195327584;ALX4:-1.54930264489;TFCP2:-1.58427151897;CDC5L:-1.59327979791;XCPE1{core}:-1.60050428381;FOXL1:-1.60775323268;JUN:-1.72767800724;SP1:-1.78545848932;HSF1,2:-1.80309204563 | |top_motifs=MYB:2.73116384794;GATA6:2.16722931203;E2F1..5:2.13753207643;ELF1,2,4:1.44802068555;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.43347964389;RXRA_VDR{dimer}:1.32570701426;POU2F1..3:1.28161230594;NFY{A,B,C}:1.22307222392;NANOG{mouse}:1.18015998729;HOXA9_MEIS1:1.14472203894;PAX6:1.14160379317;ZNF143:1.12040700915;ARID5B:1.07475514091;YY1:1.06675879076;STAT1,3:0.988721998564;NR5A1,2:0.90989212722;FOXD3:0.888897657103;TLX2:0.865401194809;STAT5{A,B}:0.84642919577;RUNX1..3:0.844657265328;ZNF148:0.827684189163;IKZF2:0.793874576954;TEF:0.775960745977;NRF1:0.734116966209;POU3F1..4:0.733307123702;TFDP1:0.707232975972;BREu{core}:0.691540471349;TGIF1:0.683134635748;PAX8:0.625065045348;FOXP3:0.599452966631;DMAP1_NCOR{1,2}_SMARC:0.598947399019;PITX1..3:0.585559886301;SPIB:0.571009412989;SOX{8,9,10}:0.562089585612;ELK1,4_GABP{A,B1}:0.550275518843;NANOG:0.533630676417;RBPJ:0.521995394747;FOXN1:0.517588349951;TOPORS:0.493100644063;FOXQ1:0.478991570073;CRX:0.464706900539;NKX2-1,4:0.455865114771;AR:0.446093660598;AIRE:0.430131768382;ETS1,2:0.420858856377;FOXA2:0.417112954049;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.387234000932;SPI1:0.380934673312;CUX2:0.315405957447;ZBTB16:0.293144625474;LEF1_TCF7_TCF7L1,2:0.275222343823;CDX1,2,4:0.26104264512;PPARG:0.237082784793;CREB1:0.215111951263;POU1F1:0.213348205124;VSX1,2:0.199878992174;HAND1,2:0.18403319393;KLF4:0.183369419702;PAX4:0.153892282635;bHLH_family:0.149436609112;HOX{A4,D4}:0.149350329985;NKX2-3_NKX2-5:0.141123657366;XBP1:0.116471794055;TFAP4:0.107233029481;OCT4_SOX2{dimer}:0.102756496526;PRRX1,2:0.101146920612;ZNF384:0.0981934369786;SOX17:0.0784420792464;AHR_ARNT_ARNT2:0.075093021166;SMAD1..7,9:0.052889768341;GCM1,2:0.0521682799531;POU6F1:0.0470386661181;BPTF:0.0375325464542;SOX2:0.0327573023559;EP300:0.0300547706981;PAX3,7:0.0134133939366;FOXP1:-0.000262078452146;RORA:-0.00657464491118;HOX{A5,B5}:-0.0224640055569;HNF4A_NR2F1,2:-0.0227178786363;EVI1:-0.0600424182167;PBX1:-0.0758997144395;NFKB1_REL_RELA:-0.0828855115412;HNF1A:-0.100319574756;EN1,2:-0.106228437198;SNAI1..3:-0.140821984326;MEF2{A,B,C,D}:-0.150008214621;FOX{I1,J2}:-0.160469047711;REST:-0.174264548105;RXR{A,B,G}:-0.186077851179;SOX5:-0.196291596736;NFIX:-0.206234555488;ATF5_CREB3:-0.20634913468;ZIC1..3:-0.218659750549;ONECUT1,2:-0.219367262587;ZNF238:-0.220312157427;IKZF1:-0.220921808971;MZF1:-0.233540480906;DBP:-0.248377985179;HES1:-0.25561231514;ALX1:-0.260891357181;GLI1..3:-0.264376505179;ZFP161:-0.264940662177;MYFfamily:-0.27192053192;PRDM1:-0.277659920083;EGR1..3:-0.295117515477;NKX2-2,8:-0.312010737977;HOX{A6,A7,B6,B7}:-0.357024519011;GTF2I:-0.375468057984;HLF:-0.384650230672;PAX2:-0.393148514054;SPZ1:-0.393780019777;FOX{F1,F2,J1}:-0.401014474037;MED-1{core}:-0.403799070657;GZF1:-0.414229738885;MYOD1:-0.415064542721;ZBTB6:-0.454841040669;SREBF1,2:-0.46533163437;NR6A1:-0.466923912181;NFE2:-0.469431748053;HMGA1,2:-0.481236660772;NKX6-1,2:-0.481949698673;ESR1:-0.483811390987;GATA4:-0.515419040938;GFI1:-0.545087514458;HIC1:-0.545250446441;NFE2L1:-0.546127484946;T:-0.549255839615;NHLH1,2:-0.552073539891;NKX3-1:-0.563840286121;NR1H4:-0.582561676217;FOS_FOS{B,L1}_JUN{B,D}:-0.597945023862;RREB1:-0.614276372481;IRF1,2:-0.614285290459;HBP1_HMGB_SSRP1_UBTF:-0.636325751789;FOSL2:-0.639090967368;ATF4:-0.64478693063;BACH2:-0.646346590802;UFEwm:-0.646594620795;LHX3,4:-0.65825368503;HIF1A:-0.658523936699;PATZ1:-0.659777330573;PAX1,9:-0.667132354993;RFX1:-0.672571018144;NR3C1:-0.672977970158;ESRRA:-0.699116007516;NFE2L2:-0.708408155206;MYBL2:-0.726161620402;TFAP2{A,C}:-0.740114391353;HMX1:-0.740170700806;STAT2,4,6:-0.772531115948;NFATC1..3:-0.774451564085;PAX5:-0.792307547669;ZEB1:-0.793908583158;RFX2..5_RFXANK_RFXAP:-0.811363702453;POU5F1:-0.818380469684;FOXM1:-0.832048981551;NFIL3:-0.838954402112;FOXO1,3,4:-0.855794949794;GTF2A1,2:-0.857868362387;MTE{core}:-0.862129183477;MAZ:-0.904935405265;LMO2:-0.913247018643;IRF7:-0.913792664015;CEBPA,B_DDIT3:-0.915985711757;PDX1:-0.942106774667;EBF1:-0.96484726053;TAL1_TCF{3,4,12}:-0.974474644139;NKX3-2:-0.979128173117;FOX{D1,D2}:-0.9832992815;TP53:-1.01470158451;TEAD1:-1.02158526094;TBP:-1.13259040533;TFAP2B:-1.15730476911;SRF:-1.17338462149;MTF1:-1.25890070443;ATF6:-1.26024658785;GFI1B:-1.27082298727;TLX1..3_NFIC{dimer}:-1.33530921156;ATF2:-1.37641195717;ZNF423:-1.38809694576;MAFB:-1.41269049183;TBX4,5:-1.46385639038;ADNP_IRX_SIX_ZHX:-1.54195327584;ALX4:-1.54930264489;TFCP2:-1.58427151897;CDC5L:-1.59327979791;XCPE1{core}:-1.60050428381;FOXL1:-1.60775323268;JUN:-1.72767800724;SP1:-1.78545848932;HSF1,2:-1.80309204563 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10699-109G6;search_select_hide=table117:FF:10699-109G6 | |||
}} | }} | ||
Latest revision as of 14:33, 3 June 2020
| Name: | acute myeloid leukemia (FAB M7) cell line:M-MOK |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13049 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13049
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13049
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.146 |
| 10 | 10 | 0.0705 |
| 100 | 100 | 0.733 |
| 101 | 101 | 0.308 |
| 102 | 102 | 0.143 |
| 103 | 103 | 0.295 |
| 104 | 104 | 0.476 |
| 105 | 105 | 0.781 |
| 106 | 106 | 0.204 |
| 107 | 107 | 0.225 |
| 108 | 108 | 0.458 |
| 109 | 109 | 0.183 |
| 11 | 11 | 0.161 |
| 110 | 110 | 0.322 |
| 111 | 111 | 0.654 |
| 112 | 112 | 0.795 |
| 113 | 113 | 0.197 |
| 114 | 114 | 0.624 |
| 115 | 115 | 0.339 |
| 116 | 116 | 0.511 |
| 117 | 117 | 0.0355 |
| 118 | 118 | 0.397 |
| 119 | 119 | 0.556 |
| 12 | 12 | 0.966 |
| 120 | 120 | 0.271 |
| 121 | 121 | 0.962 |
| 122 | 122 | 0.59 |
| 123 | 123 | 0.00283 |
| 124 | 124 | 0.0461 |
| 125 | 125 | 0.718 |
| 126 | 126 | 0.291 |
| 127 | 127 | 0.491 |
| 128 | 128 | 0.594 |
| 129 | 129 | 0.332 |
| 13 | 13 | 0.00639 |
| 130 | 130 | 0.0244 |
| 131 | 131 | 0.991 |
| 132 | 132 | 0.303 |
| 133 | 133 | 0.974 |
| 134 | 134 | 0.434 |
| 135 | 135 | 0.897 |
| 136 | 136 | 0.263 |
| 137 | 137 | 0.364 |
| 138 | 138 | 0.613 |
| 139 | 139 | 0.53 |
| 14 | 14 | 0.86 |
| 140 | 140 | 0.154 |
| 141 | 141 | 0.668 |
| 142 | 142 | 0.707 |
| 143 | 143 | 0.383 |
| 144 | 144 | 0.51 |
| 145 | 145 | 0.763 |
| 146 | 146 | 0.332 |
| 147 | 147 | 0.209 |
| 148 | 148 | 0.897 |
| 149 | 149 | 0.296 |
| 15 | 15 | 0.145 |
| 150 | 150 | 0.84 |
| 151 | 151 | 0.941 |
| 152 | 152 | 0.101 |
| 153 | 153 | 0.48 |
| 154 | 154 | 0.119 |
| 155 | 155 | 0.0761 |
| 156 | 156 | 0.79 |
| 157 | 157 | 0.578 |
| 158 | 158 | 0.952 |
| 159 | 159 | 0.464 |
| 16 | 16 | 0.279 |
| 160 | 160 | 0.679 |
| 161 | 161 | 0.192 |
| 162 | 162 | 0.765 |
| 163 | 163 | 0.172 |
| 164 | 164 | 0.897 |
| 165 | 165 | 0.572 |
| 166 | 166 | 0.162 |
| 167 | 167 | 0.152 |
| 168 | 168 | 0.179 |
| 169 | 169 | 0.645 |
| 17 | 17 | 0.41 |
| 18 | 18 | 0.431 |
| 19 | 19 | 0.821 |
| 2 | 2 | 0.543 |
| 20 | 20 | 0.436 |
| 21 | 21 | 0.919 |
| 22 | 22 | 0.71 |
| 23 | 23 | 0.0398 |
| 24 | 24 | 0.139 |
| 25 | 25 | 0.102 |
| 26 | 26 | 0.495 |
| 27 | 27 | 0.949 |
| 28 | 28 | 0.905 |
| 29 | 29 | 0.0266 |
| 3 | 3 | 0.321 |
| 30 | 30 | 0.182 |
| 31 | 31 | 0.311 |
| 32 | 32 | 0.0113 |
| 33 | 33 | 0.541 |
| 34 | 34 | 0.952 |
| 35 | 35 | 0.39 |
| 36 | 36 | 0.0513 |
| 37 | 37 | 0.77 |
| 38 | 38 | 0.459 |
| 39 | 39 | 0.0891 |
| 4 | 4 | 0.00295 |
| 40 | 40 | 0.615 |
| 41 | 41 | 0.766 |
| 42 | 42 | 0.164 |
| 43 | 43 | 0.677 |
| 44 | 44 | 0.798 |
| 45 | 45 | 0.769 |
| 46 | 46 | 0.276 |
| 47 | 47 | 0.0381 |
| 48 | 48 | 0.215 |
| 49 | 49 | 0.27 |
| 5 | 5 | 0.639 |
| 50 | 50 | 0.47 |
| 51 | 51 | 0.722 |
| 52 | 52 | 0.191 |
| 53 | 53 | 0.754 |
| 54 | 54 | 0.677 |
| 55 | 55 | 0.336 |
| 56 | 56 | 0.879 |
| 57 | 57 | 0.0599 |
| 58 | 58 | 0.136 |
| 59 | 59 | 0.839 |
| 6 | 6 | 0.634 |
| 60 | 60 | 0.88 |
| 61 | 61 | 0.202 |
| 62 | 62 | 0.106 |
| 63 | 63 | 0.424 |
| 64 | 64 | 0.206 |
| 65 | 65 | 0.243 |
| 66 | 66 | 2.30523e-5 |
| 67 | 67 | 0.225 |
| 68 | 68 | 0.441 |
| 69 | 69 | 0.59 |
| 7 | 7 | 0.0169 |
| 70 | 70 | 0.184 |
| 71 | 71 | 0.0476 |
| 72 | 72 | 0.602 |
| 73 | 73 | 0.198 |
| 74 | 74 | 0.911 |
| 75 | 75 | 0.014 |
| 76 | 76 | 0.958 |
| 77 | 77 | 0.333 |
| 78 | 78 | 0.00245 |
| 79 | 79 | 0.00279 |
| 8 | 8 | 0.476 |
| 80 | 80 | 0.52 |
| 81 | 81 | 0.785 |
| 82 | 82 | 0.804 |
| 83 | 83 | 0.211 |
| 84 | 84 | 0.75 |
| 85 | 85 | 0.0793 |
| 86 | 86 | 0.605 |
| 87 | 87 | 0.276 |
| 88 | 88 | 0.257 |
| 89 | 89 | 0.302 |
| 9 | 9 | 0.646 |
| 90 | 90 | 0.224 |
| 91 | 91 | 0.855 |
| 92 | 92 | 0.079 |
| 93 | 93 | 0.959 |
| 94 | 94 | 0.742 |
| 95 | 95 | 0.249 |
| 96 | 96 | 0.609 |
| 97 | 97 | 0.689 |
| 98 | 98 | 0.0251 |
| 99 | 99 | 0.209 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13049
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:9119 acute myeloid leukemia
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
9119 (acute myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
