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|DRA_sample_Accession=CAGE@SAMD00005930
|DRA_sample_Accession=CAGE@SAMD00005930
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005930
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005930
|accession_numbers=CAGE;DRX007902;DRR008774;DRZ000199;DRZ001584
|accession_numbers=CAGE;DRX007902;DRR008774;DRZ000199;DRZ001584;DRZ011549;DRZ012934
|accession_numbers_RNASeq=RNA-Seq;DRX057136;DRR062895;DRZ007971
|accession_numbers_RNASeq=RNA-Seq;DRX057136;DRR062895;DRZ007971
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
Line 64: Line 64:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 103: Line 103:
|top_motifs=POU2F1..3:2.65206052336;HOXA9_MEIS1:2.61205330154;PAX4:1.75338308297;NKX6-1,2:1.65836594222;NFKB1_REL_RELA:1.29626498094;AIRE:1.27081918024;ZIC1..3:1.25816448896;IKZF2:1.249827832;FOXP3:1.18984529598;HOX{A6,A7,B6,B7}:1.17644032542;EVI1:1.16754397479;POU3F1..4:1.13115432971;E2F1..5:1.12045278584;YY1:1.0796074849;GCM1,2:1.07361524451;CREB1:1.07044517186;CDX1,2,4:1.05129399052;ZBTB16:1.00552069883;NKX2-1,4:1.00078792386;ELF1,2,4:1.00076761311;NFY{A,B,C}:0.889448638454;RUNX1..3:0.857048902736;CDC5L:0.855102696622;MYOD1:0.809435211327;ATF4:0.799023108703;PBX1:0.760015964669;ATF5_CREB3:0.741470627532;MYB:0.734229964183;ESR1:0.71764743313;FOXP1:0.667846616362;TOPORS:0.633080922464;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.605342653972;SOX{8,9,10}:0.596433177569;GATA6:0.584907939109;HES1:0.584677532626;SPI1:0.578917056681;ELK1,4_GABP{A,B1}:0.562313727061;ONECUT1,2:0.55845962142;NKX3-1:0.546428405393;CRX:0.529454793563;POU1F1:0.523045866677;PAX6:0.518028405229;STAT5{A,B}:0.509508603701;PAX3,7:0.500012120996;HSF1,2:0.487536071033;NKX2-2,8:0.482041685493;BREu{core}:0.467351220657;PITX1..3:0.443103829293;FOX{F1,F2,J1}:0.429883802475;NRF1:0.411846847985;ARID5B:0.401138199595;CUX2:0.397238556968;PAX8:0.392682553477;ZNF148:0.367564800178;ZNF143:0.357861631004;JUN:0.320396810556;VSX1,2:0.307276511142;SOX17:0.28157070334;DMAP1_NCOR{1,2}_SMARC:0.250545792867;PAX2:0.248814492652;TGIF1:0.240087024992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221327589805;TEF:0.211051880256;FOXM1:0.190779452832;GFI1:0.158076848339;PRRX1,2:0.157657086794;GLI1..3:0.126323583669;RORA:0.117857880153;FOXN1:0.116221093481;AHR_ARNT_ARNT2:0.0963720464335;GATA4:0.0955863780077;TFDP1:0.0536882881432;HBP1_HMGB_SSRP1_UBTF:0.0332729218859;RFX2..5_RFXANK_RFXAP:0.000974028204434;IRF1,2:0.000703241131487;TP53:9.97770257685e-05;ALX1:-0.0122968520953;TLX2:-0.0191535134042;SPIB:-0.0202913950911;FOSL2:-0.0246316466838;LEF1_TCF7_TCF7L1,2:-0.0263804306421;UFEwm:-0.0534420052453;HNF4A_NR2F1,2:-0.0674380739668;NANOG:-0.0693458344909;NR1H4:-0.0710506393799;ETS1,2:-0.0731974637823;POU5F1:-0.0993718057781;NR5A1,2:-0.128521199819;GFI1B:-0.148810567444;RXRA_VDR{dimer}:-0.196500133869;NKX2-3_NKX2-5:-0.221210971567;SNAI1..3:-0.238436130344;OCT4_SOX2{dimer}:-0.241604744925;HNF1A:-0.264327131235;ZEB1:-0.2669977742;RREB1:-0.280754319512;NFE2:-0.281893903788;ZNF423:-0.294450659655;PAX1,9:-0.306440915515;bHLH_family:-0.310288794344;FOS_FOS{B,L1}_JUN{B,D}:-0.313064557837;ESRRA:-0.313543194756;NANOG{mouse}:-0.339023124541;HOX{A4,D4}:-0.352587991931;LMO2:-0.356469653398;ZFP161:-0.379859632661;HMGA1,2:-0.381211837509;LHX3,4:-0.397737276923;SRF:-0.414860920087;POU6F1:-0.414976217472;HIF1A:-0.458015930384;BACH2:-0.463187218717;TBP:-0.478743859818;MEF2{A,B,C,D}:-0.488985889801;NFE2L1:-0.492037377968;ADNP_IRX_SIX_ZHX:-0.502722715393;NKX3-2:-0.504263712754;DBP:-0.509577569613;FOXL1:-0.533262366213;HLF:-0.53356505463;HOX{A5,B5}:-0.537589478891;FOXD3:-0.55382783873;CEBPA,B_DDIT3:-0.56302233848;MYFfamily:-0.573789654197;MTF1:-0.587118955276;ZNF384:-0.592241103357;PPARG:-0.598768991748;TFAP4:-0.616519689382;HAND1,2:-0.627876248921;SOX2:-0.652522299123;BPTF:-0.661485977884;PDX1:-0.664382056248;SOX5:-0.677275687565;EGR1..3:-0.681075293048;RFX1:-0.712748483759;NR6A1:-0.71439614516;NFIL3:-0.716644108744;XCPE1{core}:-0.71947896226;REST:-0.719716973284;AR:-0.71972830198;ATF6:-0.725792748667;SMAD1..7,9:-0.741836165414;KLF4:-0.750863031728;RBPJ:-0.75225940321;ATF2:-0.793391454672;NFE2L2:-0.799532595836;EP300:-0.811162886883;SREBF1,2:-0.854532412829;MTE{core}:-0.854926642077;FOX{I1,J2}:-0.872201131087;NHLH1,2:-0.879993483745;GTF2A1,2:-0.904107000805;TAL1_TCF{3,4,12}:-0.9062210193;STAT2,4,6:-0.914483188827;HMX1:-0.943228435187;ALX4:-0.946226083342;STAT1,3:-0.962633683615;MYBL2:-0.968827140062;GZF1:-0.986110121672;IRF7:-0.998015007607;T:-1.07087734228;SP1:-1.08606246284;IKZF1:-1.10081771011;XBP1:-1.12586698472;PATZ1:-1.1308208845;EN1,2:-1.13240388209;HIC1:-1.13707650927;NFATC1..3:-1.14237099323;NR3C1:-1.15594817921;FOX{D1,D2}:-1.16612033273;PRDM1:-1.20971883814;FOXQ1:-1.25136788102;EBF1:-1.27644295354;TFCP2:-1.32378582178;MED-1{core}:-1.3243181653;MAFB:-1.33554879636;ZBTB6:-1.3399663007;MZF1:-1.34705600987;RXR{A,B,G}:-1.36327836382;SPZ1:-1.38252631095;FOXO1,3,4:-1.38874919455;TFAP2B:-1.39357395785;TFAP2{A,C}:-1.42365568178;TEAD1:-1.44892655313;NFIX:-1.51853068964;TBX4,5:-1.55781569482;ZNF238:-1.58314760322;TLX1..3_NFIC{dimer}:-1.64289551433;MAZ:-1.71717683067;GTF2I:-1.72368992721;PAX5:-1.75272111494;FOXA2:-1.82057864531
|top_motifs=POU2F1..3:2.65206052336;HOXA9_MEIS1:2.61205330154;PAX4:1.75338308297;NKX6-1,2:1.65836594222;NFKB1_REL_RELA:1.29626498094;AIRE:1.27081918024;ZIC1..3:1.25816448896;IKZF2:1.249827832;FOXP3:1.18984529598;HOX{A6,A7,B6,B7}:1.17644032542;EVI1:1.16754397479;POU3F1..4:1.13115432971;E2F1..5:1.12045278584;YY1:1.0796074849;GCM1,2:1.07361524451;CREB1:1.07044517186;CDX1,2,4:1.05129399052;ZBTB16:1.00552069883;NKX2-1,4:1.00078792386;ELF1,2,4:1.00076761311;NFY{A,B,C}:0.889448638454;RUNX1..3:0.857048902736;CDC5L:0.855102696622;MYOD1:0.809435211327;ATF4:0.799023108703;PBX1:0.760015964669;ATF5_CREB3:0.741470627532;MYB:0.734229964183;ESR1:0.71764743313;FOXP1:0.667846616362;TOPORS:0.633080922464;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.605342653972;SOX{8,9,10}:0.596433177569;GATA6:0.584907939109;HES1:0.584677532626;SPI1:0.578917056681;ELK1,4_GABP{A,B1}:0.562313727061;ONECUT1,2:0.55845962142;NKX3-1:0.546428405393;CRX:0.529454793563;POU1F1:0.523045866677;PAX6:0.518028405229;STAT5{A,B}:0.509508603701;PAX3,7:0.500012120996;HSF1,2:0.487536071033;NKX2-2,8:0.482041685493;BREu{core}:0.467351220657;PITX1..3:0.443103829293;FOX{F1,F2,J1}:0.429883802475;NRF1:0.411846847985;ARID5B:0.401138199595;CUX2:0.397238556968;PAX8:0.392682553477;ZNF148:0.367564800178;ZNF143:0.357861631004;JUN:0.320396810556;VSX1,2:0.307276511142;SOX17:0.28157070334;DMAP1_NCOR{1,2}_SMARC:0.250545792867;PAX2:0.248814492652;TGIF1:0.240087024992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221327589805;TEF:0.211051880256;FOXM1:0.190779452832;GFI1:0.158076848339;PRRX1,2:0.157657086794;GLI1..3:0.126323583669;RORA:0.117857880153;FOXN1:0.116221093481;AHR_ARNT_ARNT2:0.0963720464335;GATA4:0.0955863780077;TFDP1:0.0536882881432;HBP1_HMGB_SSRP1_UBTF:0.0332729218859;RFX2..5_RFXANK_RFXAP:0.000974028204434;IRF1,2:0.000703241131487;TP53:9.97770257685e-05;ALX1:-0.0122968520953;TLX2:-0.0191535134042;SPIB:-0.0202913950911;FOSL2:-0.0246316466838;LEF1_TCF7_TCF7L1,2:-0.0263804306421;UFEwm:-0.0534420052453;HNF4A_NR2F1,2:-0.0674380739668;NANOG:-0.0693458344909;NR1H4:-0.0710506393799;ETS1,2:-0.0731974637823;POU5F1:-0.0993718057781;NR5A1,2:-0.128521199819;GFI1B:-0.148810567444;RXRA_VDR{dimer}:-0.196500133869;NKX2-3_NKX2-5:-0.221210971567;SNAI1..3:-0.238436130344;OCT4_SOX2{dimer}:-0.241604744925;HNF1A:-0.264327131235;ZEB1:-0.2669977742;RREB1:-0.280754319512;NFE2:-0.281893903788;ZNF423:-0.294450659655;PAX1,9:-0.306440915515;bHLH_family:-0.310288794344;FOS_FOS{B,L1}_JUN{B,D}:-0.313064557837;ESRRA:-0.313543194756;NANOG{mouse}:-0.339023124541;HOX{A4,D4}:-0.352587991931;LMO2:-0.356469653398;ZFP161:-0.379859632661;HMGA1,2:-0.381211837509;LHX3,4:-0.397737276923;SRF:-0.414860920087;POU6F1:-0.414976217472;HIF1A:-0.458015930384;BACH2:-0.463187218717;TBP:-0.478743859818;MEF2{A,B,C,D}:-0.488985889801;NFE2L1:-0.492037377968;ADNP_IRX_SIX_ZHX:-0.502722715393;NKX3-2:-0.504263712754;DBP:-0.509577569613;FOXL1:-0.533262366213;HLF:-0.53356505463;HOX{A5,B5}:-0.537589478891;FOXD3:-0.55382783873;CEBPA,B_DDIT3:-0.56302233848;MYFfamily:-0.573789654197;MTF1:-0.587118955276;ZNF384:-0.592241103357;PPARG:-0.598768991748;TFAP4:-0.616519689382;HAND1,2:-0.627876248921;SOX2:-0.652522299123;BPTF:-0.661485977884;PDX1:-0.664382056248;SOX5:-0.677275687565;EGR1..3:-0.681075293048;RFX1:-0.712748483759;NR6A1:-0.71439614516;NFIL3:-0.716644108744;XCPE1{core}:-0.71947896226;REST:-0.719716973284;AR:-0.71972830198;ATF6:-0.725792748667;SMAD1..7,9:-0.741836165414;KLF4:-0.750863031728;RBPJ:-0.75225940321;ATF2:-0.793391454672;NFE2L2:-0.799532595836;EP300:-0.811162886883;SREBF1,2:-0.854532412829;MTE{core}:-0.854926642077;FOX{I1,J2}:-0.872201131087;NHLH1,2:-0.879993483745;GTF2A1,2:-0.904107000805;TAL1_TCF{3,4,12}:-0.9062210193;STAT2,4,6:-0.914483188827;HMX1:-0.943228435187;ALX4:-0.946226083342;STAT1,3:-0.962633683615;MYBL2:-0.968827140062;GZF1:-0.986110121672;IRF7:-0.998015007607;T:-1.07087734228;SP1:-1.08606246284;IKZF1:-1.10081771011;XBP1:-1.12586698472;PATZ1:-1.1308208845;EN1,2:-1.13240388209;HIC1:-1.13707650927;NFATC1..3:-1.14237099323;NR3C1:-1.15594817921;FOX{D1,D2}:-1.16612033273;PRDM1:-1.20971883814;FOXQ1:-1.25136788102;EBF1:-1.27644295354;TFCP2:-1.32378582178;MED-1{core}:-1.3243181653;MAFB:-1.33554879636;ZBTB6:-1.3399663007;MZF1:-1.34705600987;RXR{A,B,G}:-1.36327836382;SPZ1:-1.38252631095;FOXO1,3,4:-1.38874919455;TFAP2B:-1.39357395785;TFAP2{A,C}:-1.42365568178;TEAD1:-1.44892655313;NFIX:-1.51853068964;TBX4,5:-1.55781569482;ZNF238:-1.58314760322;TLX1..3_NFIC{dimer}:-1.64289551433;MAZ:-1.71717683067;GTF2I:-1.72368992721;PAX5:-1.75272111494;FOXA2:-1.82057864531
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10712-109I1;search_select_hide=table117:FF:10712-109I1
}}
}}

Latest revision as of 15:01, 3 June 2020

Name:hairy cell leukemia cell line:Mo
Species:Human (Homo sapiens)
Library ID:CNhs11843
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
ageNA
cell typet cell
cell lineMo
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005930
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11843 CAGE DRX007902 DRR008774
Accession ID Hg19

Library idBAMCTSS
CNhs11843 DRZ000199 DRZ001584
Accession ID Hg38

Library idBAMCTSS
CNhs11843 DRZ011549 DRZ012934
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005930
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10079 RNA-Seq DRX057136 DRR062895
Accession ID Hg19

Library idBAMCTSS
RDhi10079 DRZ007971


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.476
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.438
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0403
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0757
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0765
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0176
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0162
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0105
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.377
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.253
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00942
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0.101
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.11
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.101
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.648
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.11
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0255
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0963
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0391
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.101
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.455
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.00985
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.286
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid1.17



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11843

Jaspar motifP-value
MA0002.20.00865
MA0003.10.608
MA0004.10.191
MA0006.10.218
MA0007.10.987
MA0009.10.82
MA0014.10.729
MA0017.10.2
MA0018.22.03624e-4
MA0019.10.268
MA0024.12.38578e-4
MA0025.10.179
MA0027.10.15
MA0028.10.00847
MA0029.10.958
MA0030.10.00134
MA0031.10.0141
MA0035.20.00957
MA0038.10.435
MA0039.20.722
MA0040.10.0122
MA0041.10.0317
MA0042.10.0938
MA0043.10.535
MA0046.10.17
MA0047.20.306
MA0048.10.22
MA0050.10.512
MA0051.10.843
MA0052.10.154
MA0055.10.00536
MA0057.10.951
MA0058.10.218
MA0059.10.0514
MA0060.12.89195e-4
MA0061.11.36793e-9
MA0062.23.65188e-5
MA0065.20.0148
MA0066.10.911
MA0067.10.147
MA0068.10.0651
MA0069.10.438
MA0070.10.901
MA0071.10.37
MA0072.10.33
MA0073.10.722
MA0074.10.817
MA0076.10.00677
MA0077.10.616
MA0078.10.846
MA0079.20.315
MA0080.20.0018
MA0081.10.901
MA0083.10.715
MA0084.10.117
MA0087.10.104
MA0088.10.0294
MA0090.14.57039e-5
MA0091.10.197
MA0092.10.951
MA0093.10.167
MA0099.20.0172
MA0100.10.522
MA0101.16.75242e-9
MA0102.20.0288
MA0103.10.329
MA0104.20.00521
MA0105.12.65572e-9
MA0106.10.136
MA0107.13.13391e-9
MA0108.22.61233e-4
MA0111.10.513
MA0112.20.109
MA0113.10.89
MA0114.10.0438
MA0115.10.258
MA0116.11.52088e-5
MA0117.10.315
MA0119.10.848
MA0122.10.872
MA0124.10.499
MA0125.10.963
MA0131.10.152
MA0135.10.128
MA0136.14.24382e-4
MA0137.20.0304
MA0138.20.483
MA0139.10.0884
MA0140.10.0995
MA0141.10.0395
MA0142.10.847
MA0143.10.508
MA0144.10.0585
MA0145.10.762
MA0146.10.142
MA0147.10.00219
MA0148.10.225
MA0149.10.369
MA0150.10.736
MA0152.10.102
MA0153.14.84111e-4
MA0154.10.0278
MA0155.10.936
MA0156.10.00395
MA0157.10.132
MA0159.10.202
MA0160.10.051
MA0162.10.617
MA0163.14.85318e-12
MA0164.10.67
MA0258.10.0719
MA0259.10.0474



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11843

Novel motifP-value
10.0136
100.019
1000.214
1010.811
1020.307
1030.48
1040.685
1050.796
1060.88
1070.361
1080.997
1090.0477
110.0827
1100.16
1110.0344
1120.172
1130.702
1140.11
1150.964
1160.244
1170.0329
1180.172
1190.105
120.902
1200.834
1210.929
1221
1232.13271e-4
1240.257
1250.298
1260.995
1270.415
1280.736
1290.299
130.0177
1300.768
1310.812
1320.565
1330.934
1340.702
1350.445
1360.119
1370.638
1380.877
1390.182
140.915
1400.115
1410.72
1420.771
1430.0711
1440.649
1450.509
1460.793
1470.0842
1480.129
1490.0654
150.205
1500.904
1510.884
1520.253
1530.945
1540.711
1550.0287
1560.384
1570.97
1580.256
1590.102
160.744
1600.252
1610.826
1620.921
1630.274
1640.429
1650.488
1660.0493
1670.0483
1680.543
1690.52
170.544
180.172
190.719
20.323
200.117
210.113
220.867
230.494
240.15
250.0998
260.141
270.931
280.905
290.0188
30.141
300.0796
310.68
320.85
330.555
340.611
350.162
360.0405
370.321
380.81
390.488
40.204
400.192
410.652
420.171
430.358
440.0561
450.339
460.13
470.11
480.218
490.122
50.912
500.74
510.494
520.438
530.586
540.81
550.0539
560.864
570.137
580.0992
590.778
60.781
600.812
610.149
620.0698
630.656
640.168
650.945
660.0437
670.207
680.153
690.565
70.22
700.305
710.0351
720.82
730.704
740.822
750.0396
760.487
770.465
780.266
790.869
80.348
800.36
810.0803
820.467
830.0478
840.115
850.461
860.388
870.397
880.827
890.987
90.641
900.242
910.532
920.874
930.975
940.229
950.043
960.4
970.0493
980.288
990.135



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11843


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0103681 (hairy cell leukemia cell line sample)
0101014 (Mo-T cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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