FF:10718-109I7: Difference between revisions

Latest revision as of 15:01, 3 June 2020

Name:	biphenotypic B myelomonocytic leukemia cell line:MV-4-11
Species:	Human (Homo sapiens)
Library ID:	CNhs11845
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	10
cell type	myeloid progenitor cell
cell line	MV-4-11
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005222

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11845		CAGE		DRX007835		DRR008707

Accession ID Hg19

Library id		BAM		CTSS
CNhs11845		DRZ000132		DRZ001517

Accession ID Hg38

Library id		BAM		CTSS
CNhs11845		DRZ011482		DRZ012867

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0935
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.411
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0.159
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0264
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0316
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00616
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.756
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.571
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0358
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0131
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.179
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.46
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.03
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.179
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.179
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.306
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11845

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00505
MA0003.1	MA0003.1	0.492
MA0004.1	MA0004.1	0.093
MA0006.1	MA0006.1	0.314
MA0007.1	MA0007.1	0.3
MA0009.1	MA0009.1	0.65
MA0014.1	MA0014.1	0.274
MA0017.1	MA0017.1	0.0224
MA0018.2	MA0018.2	0.566
MA0019.1	MA0019.1	0.0229
MA0024.1	MA0024.1	0.00198
MA0025.1	MA0025.1	0.704
MA0027.1	MA0027.1	0.788
MA0028.1	MA0028.1	7.98017e-7
MA0029.1	MA0029.1	0.926
MA0030.1	MA0030.1	0.0615
MA0031.1	MA0031.1	0.211
MA0035.2	MA0035.2	0.133
MA0038.1	MA0038.1	0.0701
MA0039.2	MA0039.2	0.586
MA0040.1	MA0040.1	0.232
MA0041.1	MA0041.1	0.239
MA0042.1	MA0042.1	0.559
MA0043.1	MA0043.1	0.615
MA0046.1	MA0046.1	0.359
MA0047.2	MA0047.2	0.353
MA0048.1	MA0048.1	0.0983
MA0050.1	MA0050.1	0.382
MA0051.1	MA0051.1	0.673
MA0052.1	MA0052.1	0.114
MA0055.1	MA0055.1	0.00908
MA0057.1	MA0057.1	0.703
MA0058.1	MA0058.1	0.079
MA0059.1	MA0059.1	0.00483
MA0060.1	MA0060.1	0.00117
MA0061.1	MA0061.1	0.94
MA0062.2	MA0062.2	3.8666e-12
MA0065.2	MA0065.2	0.0171
MA0066.1	MA0066.1	0.789
MA0067.1	MA0067.1	0.361
MA0068.1	MA0068.1	0.934
MA0069.1	MA0069.1	0.79
MA0070.1	MA0070.1	0.558
MA0071.1	MA0071.1	0.0186
MA0072.1	MA0072.1	0.513
MA0073.1	MA0073.1	0.861
MA0074.1	MA0074.1	0.975
MA0076.1	MA0076.1	5.68924e-7
MA0077.1	MA0077.1	0.242
MA0078.1	MA0078.1	0.69
MA0079.2	MA0079.2	0.365
MA0080.2	MA0080.2	1.68664e-10
MA0081.1	MA0081.1	0.00176
MA0083.1	MA0083.1	0.309
MA0084.1	MA0084.1	0.312
MA0087.1	MA0087.1	0.116
MA0088.1	MA0088.1	0.00263
MA0090.1	MA0090.1	9.25135e-5
MA0091.1	MA0091.1	0.311
MA0092.1	MA0092.1	0.71
MA0093.1	MA0093.1	0.114
MA0099.2	MA0099.2	2.04626e-4
MA0100.1	MA0100.1	4.87167e-4
MA0101.1	MA0101.1	0.254
MA0102.2	MA0102.2	0.255
MA0103.1	MA0103.1	0.606
MA0104.2	MA0104.2	0.00261
MA0105.1	MA0105.1	0.0715
MA0106.1	MA0106.1	0.797
MA0107.1	MA0107.1	0.0282
MA0108.2	MA0108.2	6.83006e-6
MA0111.1	MA0111.1	0.357
MA0112.2	MA0112.2	0.0524
MA0113.1	MA0113.1	0.953
MA0114.1	MA0114.1	0.0134
MA0115.1	MA0115.1	0.0236
MA0116.1	MA0116.1	1.08577e-4
MA0117.1	MA0117.1	0.704
MA0119.1	MA0119.1	0.922
MA0122.1	MA0122.1	0.965
MA0124.1	MA0124.1	0.757
MA0125.1	MA0125.1	0.695
MA0131.1	MA0131.1	0.0257
MA0135.1	MA0135.1	0.188
MA0136.1	MA0136.1	8.99145e-17
MA0137.2	MA0137.2	0.401
MA0138.2	MA0138.2	0.969
MA0139.1	MA0139.1	0.532
MA0140.1	MA0140.1	0.307
MA0141.1	MA0141.1	0.0455
MA0142.1	MA0142.1	0.612
MA0143.1	MA0143.1	0.778
MA0144.1	MA0144.1	0.408
MA0145.1	MA0145.1	0.617
MA0146.1	MA0146.1	0.00366
MA0147.1	MA0147.1	0.00108
MA0148.1	MA0148.1	0.329
MA0149.1	MA0149.1	0.138
MA0150.1	MA0150.1	0.344
MA0152.1	MA0152.1	0.0444
MA0153.1	MA0153.1	0.00707
MA0154.1	MA0154.1	0.197
MA0155.1	MA0155.1	0.749
MA0156.1	MA0156.1	5.48062e-12
MA0157.1	MA0157.1	0.471
MA0159.1	MA0159.1	0.306
MA0160.1	MA0160.1	0.0491
MA0162.1	MA0162.1	0.629
MA0163.1	MA0163.1	4.65129e-12
MA0164.1	MA0164.1	0.705
MA0258.1	MA0258.1	0.0429
MA0259.1	MA0259.1	0.08

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11845

Novel motif	Logo	P-value
1	1	0.02
10	10	0.012
100	100	0.133
101	101	0.179
102	102	0.522
103	103	0.754
104	104	0.965
105	105	0.828
106	106	0.887
107	107	0.263
108	108	0.779
109	109	0.064
11	11	0.0333
110	110	0.18
111	111	0.172
112	112	0.98
113	113	0.989
114	114	0.0856
115	115	0.718
116	116	0.256
117	117	0.0258
118	118	0.169
119	119	0.234
12	12	0.448
120	120	0.643
121	121	0.291
122	122	0.93
123	123	2.26851e-5
124	124	0.045
125	125	0.478
126	126	0.221
127	127	0.195
128	128	0.555
129	129	0.282
13	13	0.0036
130	130	0.743
131	131	0.132
132	132	0.799
133	133	0.823
134	134	0.221
135	135	0.268
136	136	0.251
137	137	0.569
138	138	0.762
139	139	0.206
14	14	0.94
140	140	0.614
141	141	0.526
142	142	0.348
143	143	0.791
144	144	0.993
145	145	0.416
146	146	0.727
147	147	0.364
148	148	0.168
149	149	0.813
15	15	0.527
150	150	0.606
151	151	0.838
152	152	0.376
153	153	0.912
154	154	0.869
155	155	0.0125
156	156	0.685
157	157	0.38
158	158	0.487
159	159	0.138
16	16	0.977
160	160	0.616
161	161	0.249
162	162	0.938
163	163	0.244
164	164	0.201
165	165	0.108
166	166	0.296
167	167	0.0269
168	168	0.316
169	169	0.111
17	17	0.67
18	18	0.967
19	19	0.554
2	2	0.369
20	20	0.281
21	21	0.0865
22	22	0.591
23	23	0.0777
24	24	0.399
25	25	0.227
26	26	0.0143
27	27	0.577
28	28	0.822
29	29	0.0193
3	3	0.0413
30	30	0.0446
31	31	0.553
32	32	0.451
33	33	0.421
34	34	0.984
35	35	0.343
36	36	0.00621
37	37	0.153
38	38	0.213
39	39	0.466
4	4	0.222
40	40	0.106
41	41	0.664
42	42	0.162
43	43	0.534
44	44	0.328
45	45	0.517
46	46	0.106
47	47	0.0144
48	48	0.0165
49	49	0.192
5	5	0.712
50	50	0.877
51	51	0.657
52	52	0.483
53	53	0.149
54	54	0.964
55	55	0.737
56	56	0.984
57	57	0.217
58	58	0.192
59	59	0.598
6	6	0.391
60	60	0.616
61	61	0.173
62	62	0.197
63	63	0.548
64	64	0.0885
65	65	0.732
66	66	0.0901
67	67	0.983
68	68	0.5
69	69	0.102
7	7	0.142
70	70	0.957
71	71	0.0369
72	72	0.867
73	73	0.185
74	74	0.933
75	75	0.0158
76	76	0.104
77	77	0.785
78	78	0.0696
79	79	0.35
8	8	0.0852
80	80	0.139
81	81	0.304
82	82	0.817
83	83	0.853
84	84	0.394
85	85	0.919
86	86	0.773
87	87	0.0941
88	88	0.681
89	89	0.212
9	9	0.698
90	90	0.0181
91	91	0.691
92	92	0.369
93	93	0.822
94	94	0.523
95	95	0.0246
96	96	0.655
97	97	0.391
98	98	0.337
99	99	0.523

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11845

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100740 myeloid leukemia cell line sample
FF:0100741 lymphocytic leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005222
+|accession_numbers=CAGE;DRX007835;DRR008707;DRZ000132;DRZ001517;DRZ011482;DRZ012867
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.35!220.49!IRF8;;chr5:134369879..134369898,-!p2@PITX1!2.26!181.10!PITX1;;chr11:47400078..47400106,-!p1@SPI1!2.19!152.96!SPI1;;chr3:18486354..18486377,-!p2@SATB1!1.97!115.10!SATB1;;chr2:68592406..68592424,+!p1@PLEK!1.93!83.39!PLEK;;chr6:135502501..135502546,+!p1@MYB!1.90!92.59!MYB;;chr5:134369905..134369972,-!p1@PITX1!1.89!115.62!PITX1;;chr6:135502408..135502459,+!p2@MYB!1.88!85.43!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.86!288.02!CEBPA;;chr1:92951607..92951661,-!p1@GFI1!1.80!61.90!GFI1;;chr7:50344289..50344323,+!p1@IKZF1!1.79!60.37!IKZF1;;chr1:92949331..92949377,-!p2@GFI1!1.72!51.16!GFI1;;chr2:100759037..100759058,-!p2@AFF3!1.64!42.97!AFF3;;chr7:113726357..113726443,+!p1@FOXP2!1.60!65.99!FOXP2;;chr7:27205136..27205164,-!p1@HOXA9!1.60!38.88!HOXA9;;chr12:54778471..54778528,-!p1@ZNF385A!1.60!38.88!ZNF385A;;chr10:135044190..135044229,+!p3@UTF1!1.59!37.86!UTF1;;chr2:100759010..100759035,-!p1@AFF3!1.58!37.34!AFF3;;chr6:135516877..135516900,+!p5@MYB!1.55!34.79!MYB;;chr3:18467290..18467311,-!p8@SATB1!1.50!30.69!SATB1;;chr10:31288398..31288455,-!p2@ZNF438!1.44!30.69!ZNF438;;chr2:145277640..145277771,-!p1@ZEB2!1.43!335.59!ZEB2;;chr10:124907645..124907660,+!p1@HMX2!1.42!25.58!HMX2;;chr2:172949484..172949522,+!p1@DLX1!1.39!23.53!DLX1;;chr19:13213662..13213686,-!p1@LYL1!1.38!33.76!LYL1;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.90!RUNX3;;chr1:25291475..25291511,-!p2@RUNX3!1.33!20.46!RUNX3;;chr6:391743..391759,+!p1@IRF4!1.33!20.46!IRF4;;chr11:47400062..47400077,-!p2@SPI1!1.31!19.44!SPI1;;chr7:27213893..27213954,-!p1@HOXA10!1.29!18.42!HOXA10;;chr7:50343634..50343717,+!p2@IKZF1!1.29!18.42!IKZF1;;chr2:102091566..102091581,-!p1@RFX8!1.29!18.42!RFX8;;chr15:76629123..76629151,+!p1@ISL2!1.28!19.95!ISL2;;chr7:50344251..50344288,+!p3@IKZF1!1.26!17.39!IKZF1;;chr19:13213704..13213726,-!p3@LYL1!1.25!22.00!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!1.25!16.88!KDM5D;;chr5:88178983..88179012,-!p1@MEF2C!1.23!120.22!MEF2C;;chr6:135502472..135502489,+!p3@MYB!1.23!15.86!MYB;;chr1:92952473..92952489,-!p3@GFI1!1.23!15.86!GFI1;;chr19:50432453..50432468,+!p1@ATF5!1.21!825.68!ATF5;;chr2:239148671..239148686,-!p1@HES6!1.21!55.76!HES6;;chr7:115670804..115670825,-!p1@TFEC!1.21!15.35!TFEC;;chr7:128577972..128578047,+!p1@IRF5!1.20!23.53!IRF5;;chr7:27205106..27205134,-!p2@HOXA9!1.19!14.32!HOXA9;;chr6:45390269..45390298,+!p5@RUNX2!1.18!23.53!RUNX2;;chr6:45390025..45390076,+!p2@RUNX2!1.17!33.25!RUNX2;;chr10:124895472..124895508,+!p1@HMX3!1.17!13.81!HMX3;;chr6:135516909..135516925,+!p6@MYB!1.14!12.79!MYB;;chr2:145282041..145282092,-!p8@ZEB2!1.13!18.93!ZEB2;;chrX:119384749..119384763,+!p4@ZBTB33!1.13!16.37!ZBTB33;;chr14:75988771..75988826,+!p1@BATF!1.11!15.86!BATF;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.11!11.77!MEF2B;;chr11:47399996..47400014,-!p4@SPI1!1.11!11.77!SPI1;;chr16:54320646..54320672,-!p2@IRX3!1.08!16.88!IRX3;;chr10:124907876..124907888,+!p5@HMX2!1.07!10.74!HMX2;;chrX:106960221..106960236,-!p3@TSC22D3!1.06!29.16!TSC22D3;;chr6:45390002..45390023,+!p6@RUNX2!1.06!18.42!RUNX2;;chr19:45579725..45579743,-!p1@ZNF296!1.05!47.06!ZNF296;;chr2:66662249..66662267,+!p2@MEIS1!1.05!39.90!MEIS1;;chr5:176738887..176738934,-!p1@MXD3!1.04!67.02!MXD3;;chr2:100759060..100759073,-!p8@AFF3!1.03!9.72!AFF3;;chr3:18466787..18466839,-!p1@SATB1!1.02!43.48!SATB1;;chr19:33865009..33865090,+!p3@CEBPG!1.01!12.28!CEBPG;;chr6:45390300..45390335,+!p4@RUNX2!1.00!14.32!RUNX2;;chr11:128563948..128564003,+!p1@FLI1!0.99!107.43!FLI1;;chr2:145277882..145277967,-!p3@ZEB2!0.99!15.35!ZEB2;;chr2:68592394..68592405,+!p2@PLEK!0.96!8.19!PLEK;;chr16:54319010..54319041,-!p8@IRX3!0.96!8.19!IRX3;;chr18:55102598..55102623,+!p1@ONECUT2!0.96!8.19!ONECUT2;;chr1:92949505..92949543,-!p5@GFI1!0.96!8.19!GFI1;;chr19:20011744..20011770,+!p1@ZNF93!0.94!31.21!ZNF93;;chr18:55102628..55102646,+!p2@ONECUT2!0.94!7.67!ONECUT2;;chr3:157824001..157824078,-!p2@SHOX2!0.94!7.67!SHOX2;;chr7:73038839..73038862,-!p1@MLXIPL!0.94!7.67!MLXIPL;;chr5:134369848..134369853,-!p6@PITX1!0.91!7.16!PITX1;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.16!LYL1;;chr10:31288370..31288393,-!p3@ZNF438!0.91!7.16!ZNF438;;chr2:100759076..100759088,-!p10@AFF3!0.91!7.16!AFF3;;chr2:60780753..60780800,-!p1@BCL11A!0.90!35.81!BCL11A;;chr20:50159198..50159299,-!p1@NFATC2!0.90!10.23!NFATC2;;chr2:100758991..100759009,-!p3@AFF3!0.88!6.65!AFF3;;chr11:47400045..47400060,-!p6@SPI1!0.88!6.65!SPI1;;chr1:156470515..156470542,-!p2@MEF2D!0.87!35.30!MEF2D;;chr17:79881332..79881348,-!p3@MAFG!0.87!9.72!MAFG;;chrX:119384566..119384585,+!p2@ZBTB33!0.86!10.23!ZBTB33;;chr16:29817841..29817865,+!p1@MAZ!0.85!140.17!MAZ;;chr16:54320675..54320715,-!p1@IRX3!0.85!13.81!IRX3;;chr7:113726226..113726245,+!p3@FOXP2!0.85!6.14!FOXP2;;chr7:35293685..35293718,-!p1@TBX20!0.85!6.14!TBX20;;chr11:47400032..47400043,-!p5@SPI1!0.85!6.14!SPI1;;chr16:54320617..54320643,-!p3@IRX3!0.84!7.67!IRX3;;chr11:19263160..19263176,-!p1@E2F8!0.82!6.65!E2F8;;chr11:47399947..47399961,-!p3@SPI1!0.82!5.63!SPI1;;chr2:17296762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579;;chr19:56111639..56111668,+!p2@ZNF524!0.28!4.09!ZNF524;;chr19:42759300..42759324,-!p2@ERF!0.28!3.58!ERF;;chr1:35657108..35657135,-!p5@SFPQ!0.28!2.56!SFPQ;;chr20:25677399..25677433,-!p3@ZNF337!0.28!2.56!ZNF337;;chr19:18391593..18391611,-!p6@JUND!0.28!2.05!JUND;;chr19:11750566..11750627,+!p1@ZNF833P!0.28!1.53!ZNF833P;;chr19:21264943..21264958,+!p3@ZNF714!0.28!1.53!ZNF714;;chr19:37958404..37958434,+!p2@ZNF570!0.28!1.53!ZNF570;;chr19:58144589..58144603,+!p2@ZNF211!0.28!1.53!ZNF211;;chr1:151377005..151377009,-!p6@POGZ!0.28!1.53!POGZ;;chr1:212873267..212873332,-!p1@BATF3!0.28!1.53!BATF3;;chr21:36260773..36260804,-!p7@RUNX1!0.28!1.53!RUNX1;;chr6:27356527..27356557,+!p2@ZNF391!0.28!1.53!ZNF391;;chr8:81398478..81398495,+!p7@ZBTB10!0.28!1.53!ZBTB10;;chr8:102217817..102217936,-!p1@ZNF706!0.27!78.27!ZNF706;;chr2:169312725..169312810,+!p1@CERS6!0.27!40.41!CERS6;;chr4:87856129..87856186,+!p1@AFF1!0.27!23.02!AFF1;;chr8:145159357..145159373,+!p3@MAF1!0.27!20.97!MAF1;;chr8:28747884..28747938,+!p1@HMBOX1!0.27!20.46!HMBOX1;;chr19:35168567..35168620,+!p1@ZNF302!0.27!18.93!ZNF302;;chr19:4066803..4066886,-!p1@ZBTB7A!0.27!17.39!ZBTB7A;;chr16:1662351..1662442,+!p1@CRAMP1L!0.27!11.77!CRAMP1L;;chr12:133562959..133563013,+!p1@ZNF26!0.27!10.74!ZNF26;;chr18:72922811..72922827,+!p1@TSHZ1!0.27!7.67!TSHZ1;;chr19:44507091..44507163,+!p1@ZNF230!0.27!6.65!ZNF230;;chr19:38270215..38270251,-!p1@ZNF573!0.27!6.14!ZNF573;;chr9:137218341..137218361,+!p2@RXRA!0.27!6.14!RXRA;;chr8:128750654..128750793,+!p3@MYC!0.27!6.14!MYC;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.27!3.07!ZNF285;;chr11:47235980..47236028,+!p3@DDB2!0.27!3.07!DDB2;;chr14:64970427..64970457,+!p3@ZBTB1!0.27!2.56!ZBTB1;;chr16:3285119..3285133,-!p2@ZNF200!0.27!2.56!ZNF200;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.27!2.05!MEIS3P1;;chr12:11802547..11802560,+!p5@ETV6!0.27!1.53!ETV6;;chr19:13213511..13213545,-!p2@LYL1!0.27!1.02!LYL1;;chr19:20748620..20748630,-!p3@ZNF737!0.27!1.02!ZNF737;;chr22:21356378..21356422,-!p2@THAP7!0.26!13.81!THAP7;;chr6:109804412..109804458,-!p1@ZBTB24!0.26!13.81!ZBTB24;;chr17:36861393..36861439,+!p2@MLLT6!0.26!9.21!MLLT6;;chr8:42698194..42698239,-!p2@THAP1!0.26!6.65!THAP1;;chr1:91487774..91487802,-!p2@ZNF644!0.26!3.58!ZNF644;;chr14:45722287..45722308,-!p2@MIS18BP1!0.26!3.58!MIS18BP1;;chr19:22018938..22018963,-!p3@ZNF43!0.26!3.07!ZNF43;;chr19:21512115..21512135,-!p3@ZNF708!0.26!2.56!ZNF708;;chr5:76383070..76383117,-!p3@ZBED3!0.26!2.56!ZBED3;;chr8:128750555..128750609,+!p5@MYC!0.26!2.56!MYC;;chr18:32924431..32924440,-!p2@ZNF24!0.26!2.05!ZNF24;;chr4:87857474..87857489,+!p7@AFF1!0.26!2.05!AFF1;;chr1:235383681..235383700,-!p2@ARID4B!0.26!2.05!ARID4B;;chr15:74833547..74833567,+!p2@ARID3B!0.26!1.53!ARID3B;;chr16:3333546..3333558,+!p5@ZNF263!0.26!1.02!ZNF263;;chr1:235344971..235344985,-!p5@ARID4B!0.26!1.02!ARID4B;;chr12:27485733..27485742,+!p5@ARNTL2!0.26!1.02!ARNTL2;;chr14:74206010..74206013,-!p13@C14orf43!0.26!1.02!C14orf43;;chr5:43121586..43121601,+!p10@ZNF131!0.26!1.02!ZNF131;;chr7:127032363..127032382,-!p6@ZNF800!0.26!1.02!ZNF800;;chr19:6424813..6424835,-!p1@KHSRP!0.25!100.78!KHSRP;;chr1:156470556..156470643,-!p1@MEF2D!0.25!64.46!MEF2D;;chr5:131826457..131826514,-!p1@IRF1!0.25!62.92!IRF1;;chr11:85376121..85376181,-!p1@CREBZF!0.25!49.11!CREBZF;;chr19:39390587..39390646,+!p1@NFKBIB!0.25!25.07!NFKBIB;;chr5:138609782..138609826,+!p5@MATR3!0.25!9.72!MATR3;;chr15:85291544..85291598,+!p2@ZNF592!0.25!9.21!ZNF592;;chr19:19496624..19496660,+!p3@GATAD2A!0.25!6.65!GATAD2A;;chr6:27440837..27440912,-!p1@ZNF184!0.25!6.65!ZNF184;;chr19:45909594..45909625,-!p2@PPP1R13L!0.25!6.65!PPP1R13L;;chr19:37569314..37569381,+!p1@ZNF420!0.25!5.12!ZNF420;;chr18:74534479..74534551,+!p1@ZNF236!0.25!4.09!ZNF236;;chr19:37178482..37178520,+!p1@ZNF567!0.25!3.58!ZNF567;;chr1:67395982..67396015,+!p4@MIER1!0.25!3.58!MIER1;;chr7:6676986..6677005,+!p2@ENST00000427912!0.25!3.58!ZNF316;;chr7:129251614..129251630,+!p2@NRF1!0.25!3.07!NRF1;;chr20:42543506..42543549,+!p2@TOX2!0.25!3.07!TOX2;;chr19:44037546..44037594,+!p1@ZNF575!0.25!2.56!ZNF575;;chr19:56652621..56652641,+!p2@ZNF444!0.25!2.56!ZNF444;;chr1:42501569..42501614,-!p1@HIVEP3!0.25!2.56!HIVEP3;;chr5:178157700..178157734,-!p3@ZNF354A!0.25!2.56!ZNF354A;;chr8:145159324..145159333,+!p5@MAF1!0.25!2.56!MAF1;;chr16:31085058..31085078,-!p2@ZNF668!0.25!2.56!ZNF668;;chr8:128750175..128750201,+!p8@MYC!0.25!2.05!MYC;;chr2:185463247..185463263,+!p1@ZNF804A!0.25!2.05!ZNF804A;;chr18:3448422..3448439,+!p11@TGIF1!0.25!1.53!TGIF1;;chr15:37392687..37392698,-!p14@MEIS2!0.25!1.02!MEIS2;;chr15:85144307..85144329,+!p2@ZSCAN2!0.25!1.02!ZSCAN2;;chr17:38504601..38504634,+!p9@RARA!0.25!1.02!RARA;;chr17:46675420..46675465,-!p3@HOXB6!0.25!1.02!HOXB6;;chr19:12551849..12551868,-!p4@ZNF443!0.25!1.02!ZNF443;;chr19:19303794..19303805,+!p5@RFXANK!0.25!1.02!RFXANK;;chr19:44124019..44124030,-!p2@ZNF428!0.25!1.02!ZNF428;;chr1:35644482..35644486,-!p11@SFPQ!0.25!1.02!SFPQ;;chr10:21823296..21823309,+!p8@MLLT10!0.25!1.02!MLLT10;;chr13:114238997..114239077,+!p1@TFDP1!0.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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/biphenotypic%2520B%2520myelomonocytic%2520leukemia%2520cell%2520line%253aMV-4-11.CNhs11845.10718-109I7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/biphenotypic%2520B%2520myelomonocytic%2520leukemia%2520cell%2520line%253aMV-4-11.CNhs11845.10718-109I7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/biphenotypic%2520B%2520myelomonocytic%2520leukemia%2520cell%2520line%253aMV-4-11.CNhs11845.10718-109I7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/biphenotypic%2520B%2520myelomonocytic%2520leukemia%2520cell%2520line%253aMV-4-11.CNhs11845.10718-109I7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/biphenotypic%2520B%2520myelomonocytic%2520leukemia%2520cell%2520line%253aMV-4-11.CNhs11845.10718-109I7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10718-109I7
 |is_a=EFO:0002091;;FF:0000210;;FF:0100740;;FF:0100741
 |is_obsolete=
+|library_id=CNhs11845
+|library_id_phase_based=2:CNhs11845
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10718
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10718
 |name=biphenotypic B myelomonocytic leukemia cell line:MV-4-11
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11845,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=109
@@ Line 62: / Line 78: @@
 |rna_weight_ug=26.89904
 |sample_age=10
+|sample_category=cell lines
 |sample_cell_catalog=CRL-9591
 |sample_cell_line=MV-4-11
@@ Line 83: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10718-109I7;search_select_hide=table117:FF:10718-109I7
 }}

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FF:10718-109I7: Difference between revisions

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Latest revision as of 15:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0