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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005185
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005185
|accession_numbers=CAGE;DRX007914;DRR008786;DRZ000211;DRZ001596;DRZ011561;DRZ012946
|accession_numbers_RNASeq=RNA-Seq;DRX057137;DRR062896;DRZ007972
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!1.83!66.62!HAND1;;chr12:54694758..54694805,-!p1@NFE2!1.78!70.69!NFE2;;chr15:42749722..42749739,-!p2@ZFP106!1.73!92.30!ZFP106;;chr18:6414884..6414942,-!p1@L3MBTL4!1.68!57.72!L3MBTL4;;chr1:170633348..170633399,+!p2@PRRX1!1.66!59.75!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.94!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.55!91.28!OSR1;;chr9:4117869..4117882,-!p12@GLIS3!1.54!33.31!GLIS3;;chr1:170632477..170632506,+!p6@PRRX1!1.50!30.77!PRRX1;;chr10:114889016..114889037,+!p15@TCF7L2!1.48!29.24!TCF7L2;;chr10:114889045..114889074,+!p12@TCF7L2!1.47!28.22!TCF7L2;;chr17:41739283..41739297,-!p1@MEOX1!1.43!25.68!MEOX1;;chr1:170633262..170633285,+!p3@PRRX1!1.42!28.73!PRRX1;;chr9:4300050..4300118,-!p1@GLIS3!1.41!154.34!GLIS3;;chr5:137804405..137804444,+!p3@EGR1!1.40!28.99!EGR1;;chr10:119302645..119302712,+!p3@EMX2!1.38!23.14!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!1.38!23.14!HOXC9;;chr15:96869255..96869291,+!p6@NR2F2!1.37!40.17!NR2F2;;chr12:54694807..54694832,-!p3@NFE2!1.37!22.63!NFE2;;chr22:19748231..19748317,+!p1@TBX1!1.35!21.61!TBX1;;chr2:66662797..66662818,+!p10@MEIS1!1.30!18.82!MEIS1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.82!HOXC5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.56!ZBED1;;chr10:119303078..119303169,+!p2@EMX2!1.29!18.31!EMX2;;chr15:96876966..96877017,+!p12@NR2F2!1.24!23.39!NR2F2;;chr17:8027418..8027432,-!p1@HES7!1.23!16.02!HES7;;chr12:54402745..54402788,+!p1@HOXC8!1.21!15.26!HOXC8;;chr2:66666432..66666462,+!p7@MEIS1!1.19!14.49!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!1.18!14.24!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.16!13.48!PRRX1;;chr4:54966328..54966335,+!p1@GSX2!1.15!13.22!GSX2;;chr15:96880438..96880445,+!p23@NR2F2!1.15!13.22!NR2F2;;chr18:6414849..6414876,-!p2@L3MBTL4!1.15!12.97!L3MBTL4;;chr2:121493492..121493537,+!p2@GLI2!1.14!21.10!GLI2;;chr6:19837592..19837621,+!p1@ID4!1.13!77.04!ID4;;chr5:137801160..137801176,+!p1@EGR1!1.10!1135.82!EGR1;;chr16:73093174..73093209,-!p3@ZFHX3!1.10!15.76!ZFHX3;;chr15:96869222..96869251,+!p18@NR2F2!1.09!13.22!NR2F2;;chr12:3068634..3068656,+!p5@TEAD4!1.09!11.44!TEAD4;;chr1:170632439..170632465,+!p11@PRRX1!1.09!11.19!PRRX1;;chr5:137804357..137804390,+!p4@EGR1!1.08!12.97!EGR1;;chr10:114886405..114886424,+!p26@TCF7L2!1.06!10.43!TCF7L2;;chr12:54785054..54785072,-!p4@ZNF385A!1.04!11.44!ZNF385A;;chr2:121493425..121493474,+!p1@GLI2!1.03!21.61!GLI2;;chr15:96869114..96869160,+!p11@NR2F2!1.03!13.22!NR2F2;;chr10:119302232..119302265,+!p1@EMX2!1.03!9.66!EMX2;;chr12:54694653..54694672,-!p2@NFE2!1.03!9.66!NFE2;;chr12:54772960..54773015,-!p3@ZNF385A!1.02!46.79!ZNF385A;;chr15:96874244..96874259,+!p5@NR2F2!1.02!23.14!NR2F2;;chr12:54785074..54785122,-!p2@ZNF385A!1.02!14.75!ZNF385A;;chr20:31350184..31350200,+!p1@DNMT3B!1.01!19.32!DNMT3B;;chr8:99956662..99956684,+!p1@OSR2!1.01!14.24!OSR2;;chr1:23885981..23886002,-!p1@ID3!0.99!1551.29!ID3;;chr15:96869292..96869320,+!p15@NR2F2!0.98!12.46!NR2F2;;chr10:114886551..114886601,+!p11@TCF7L2!0.98!8.65!TCF7L2;;chr2:66662281..66662308,+!p1@MEIS1!0.97!29.24!MEIS1;;chr2:71127699..71127744,+!p1@VAX2!0.96!17.04!VAX2;;chr19:45971246..45971265,+!p1@FOSB!0.95!151.29!FOSB;;chr11:63684602..63684664,-!p1@RCOR2!0.95!16.02!RCOR2;;chr6:21597600..21597664,+!p3@SOX4!0.95!13.22!SOX4;;chr15:96874145..96874166,+!p7@NR2F2!0.94!15.26!NR2F2;;chr19:22817119..22817145,+!p1@ZNF492!0.94!13.22!ZNF492;;chr7:63505799..63505904,+!p1@ZNF727!0.94!7.63!ZNF727;;chr15:96874012..96874042,+!p2@NR2F2!0.93!70.69!NR2F2;;chr10:114710098..114710130,+!p2@TCF7L2!0.93!58.23!TCF7L2;;chr16:29818199..29818216,+!p11@MAZ!0.93!12.46!MAZ;;chr1:23857325..23857416,-!p2@E2F2!0.93!8.90!E2F2;;chr15:96874216..96874236,+!p13@NR2F2!0.92!11.44!NR2F2;;chr8:67525443..67525459,-!p2@MYBL1!0.92!11.19!MYBL1;;chr10:114886387..114886398,+!p36@TCF7L2!0.92!7.37!TCF7L2;;chr10:114886432..114886455,+!p20@TCF7L2!0.92!7.37!TCF7L2;;chr1:170632683..170632696,+!p12@PRRX1!0.92!7.37!PRRX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.91!7.12!SEBOX;;chr1:170632959..170632987,+!p4@PRRX1!0.90!7.63!PRRX1;;chr1:40367668..40367684,-!p2@MYCL1!0.90!6.87!MYCL1;;chr17:70117153..70117174,+!p1@SOX9!0.88!71.70!SOX9;;chr15:96869165..96869183,+!p20@NR2F2!0.88!6.61!NR2F2;;chr12:3068668..3068689,+!p7@TEAD4!0.88!6.61!TEAD4;;chr1:935467..935484,-!p1@HES4!0.87!29.75!HES4;;chr10:119302268..119302282,+!p4@EMX2!0.87!6.36!EMX2;;chr12:57853634..57853662,+!p2@GLI1!0.87!6.36!GLI1;;chr2:66662895..66662907,+!p3@MEIS1!0.86!7.88!MEIS1;;chr12:52445218..52445237,+!p1@NR4A1!0.85!82.38!NR4A1;;chr9:4299979..4299996,-!p3@GLIS3!0.85!10.17!GLIS3;;chr10:119302508..119302559,+!p5@EMX2!0.85!6.10!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.10!HOXC5;;chr12:54402790..54402805,+!p2@HOXC8!0.84!5.85!HOXC8;;chr2:66662510..66662521,+!p6@MEIS1!0.84!5.85!MEIS1;;chr9:4300016..4300039,-!p2@GLIS3!0.83!10.17!GLIS3;;chr10:70320074..70320106,+!p1@TET1!0.82!11.95!TET1;;chr14:75745523..75745537,+!p1@FOS!0.81!710.17!FOS;;chr12:3068544..3068597,+!p1@TEAD4!0.81!35.34!TEAD4;;chr8:128748308..128748324,+!p2@MYC!0.80!161.71!MYC;;chr1:151032860..151032918,+!p1@MLLT11!0.80!67.89!MLLT11;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.12!EGR1;;chr7:150946015..150946070,-!p3@SMARCD3!0.79!11.70!SMARCD3;;chr6:43140095..43140145,+!p5@SRF!0.79!6.61!SRF;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.85!ISL2;;chr22:19746969..19746987,+!p2@TBX1!0.78!5.09!TBX1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.41!MYCL1;;chr3:52001448..52001478,-!p2@PCBP4!0.76!73.74!PCBP4;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.67!MYBL2;;chr7:74072135..74072171,+!p2@GTF2I!0.75!15.76!GTF2I;;chr1:151032922..151032951,+!p2@MLLT11!0.75!8.14!MLLT11;;chr9:14314476..14314487,-!p9@NFIB!0.75!4.58!NFIB;;chr6:21593973..21593988,+!p1@SOX4!0.74!182.31!SOX4;;chr7:150974206..150974255,-!p1@SMARCD3!0.74!31.02!SMARCD3;;chr11:12696071..12696086,+!p3@TEAD1!0.74!6.10!TEAD1;;chr7:149470641..149470694,-!p1@ZNF467!0.73!21.87!ZNF467;;chr20:50179368..50179392,-!p2@NFATC2!0.73!5.85!NFATC2;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.32!PRRX1;;chr1:26496459..26496470,+!p2@ZNF593!0.72!8.65!ZNF593;;chr1:23857698..23857733,-!p1@E2F2!0.72!8.39!E2F2;;chr16:73092791..73092831,-!p4@ZFHX3!0.72!8.14!ZFHX3;;chr9:4299959..4299974,-!p4@GLIS3!0.72!7.12!GLIS3;;chr19:49864746..49864780,-!p2@TEAD2!0.72!6.10!TEAD2;;chr5:138609782..138609826,+!p5@MATR3!0.71!29.75!MATR3;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.46!MYBL2;;chr2:121493717..121493755,+!p3@GLI2!0.71!4.58!GLI2;;chr12:2986206..2986258,-!p2@FOXM1!0.70!27.21!FOXM1;;chr1:8763296..8763339,-!p9@RERE!0.70!10.68!RERE;;chr12:54694738..54694749,-!p5@NFE2!0.70!4.07!NFE2;;chr17:42295682..42295731,-!p17@UBTF!0.70!4.07!UBTF;;chr8:49833948..49833973,-!p2@SNAI2!0.69!27.97!SNAI2;;chr9:3525910..3525955,-!p4@RFX3!0.69!12.97!RFX3;;chr10:44070016..44070069,-!p1@ZNF239!0.68!12.71!ZNF239;;chr12:80084167..80084197,-!p5@PAWR!0.68!9.66!PAWR;;chr2:19558327..19558334,-!p2@OSR1!0.68!3.81!OSR1;;chr2:42721205..42721307,+!p4@MTA3!0.68!3.81!MTA3;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.68!3.81!SEBOX;;chr12:77459306..77459365,-!p1@E2F7!0.67!52.89!E2F7;;chr15:96874063..96874074,+!p10@NR2F2!0.67!7.37!NR2F2;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.44!PCBP4;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.56!HEYL;;chr20:25062773..25062779,-!p3@VSX1!0.66!3.56!VSX1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.66!3.56!LHX1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.65!420.31!ZFP36L1;;chr15:96873921..96873946,+!p1@NR2F2!0.65!115.18!NR2F2;;chr8:103667935..103667960,-!p1@KLF10!0.64!177.99!KLF10;;chr20:306489..306564,+!p1@SOX12!0.64!42.72!SOX12;;chr4:121843844..121843904,-!p1@PRDM5!0.63!8.65!PRDM5;;chr1:247171347..247171366,-!p2@ZNF695!0.63!6.61!ZNF695;;chr11:120107344..120107351,+!p1@POU2F3!0.63!4.07!POU2F3;;chr12:54402729..54402743,+!p3@HOXC8!0.63!3.31!HOXC8;;chr10:114709999..114710031,+!p1@TCF7L2!0.62!91.03!TCF7L2;;chr19:49865646..49865718,-!p1@TEAD2!0.62!32.29!TEAD2;;chr2:157189180..157189290,-!p1@NR4A2!0.62!19.32!NR4A2;;chr1:205600919..205600982,-!p3@ELK4!0.62!13.73!ELK4;;chr9:14314522..14314556,-!p3@NFIB!0.62!8.39!NFIB;;chr5:176738887..176738934,-!p1@MXD3!0.61!24.66!MXD3;;chr17:41277372..41277418,-!p1@BRCA1!0.61!12.97!BRCA1;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.88!MYBL1;;chr1:935398..935465,-!p2@HES4!0.61!7.12!HES4;;chr9:14314106..14314119,-!p5@NFIB!0.61!6.10!NFIB;;chr17:42297092..42297112,-!p11@UBTF!0.61!5.34!UBTF;;chr15:96869206..96869220,+!p21@NR2F2!0.61!3.05!NR2F2;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.05!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.61!3.05!HOXC9;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.05!PRRX1;;chr14:21566731..21566836,-!p1@ZNF219!0.60!38.39!ZNF219;;chr19:12721790..12721810,+!p2@ZNF791!0.60!9.41!ZNF791;;chr11:46299539..46299620,+!p2@CREB3L1!0.60!5.59!CREB3L1;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.60!4.58!TGIF2;;chr10:3827371..3827386,-!p2@KLF6!0.59!29.75!KLF6;;chr19:57183114..57183145,-!p1@ZNF835!0.59!3.31!ZNF835;;chr6:21597765..21597779,+!p2@SOX4!0.58!27.46!SOX4;;chr9:14314131..14314147,-!p2@NFIB!0.58!18.82!NFIB;;chr12:7079780..7079791,-!p2@PHB2!0.58!17.54!PHB2;;chr17:42298615..42298692,-!p2@UBTF!0.58!17.29!UBTF;;chr6:43140149..43140177,+!p8@SRF!0.58!3.05!SRF;;chr12:54402694..54402705,+!p5@HOXC8!0.58!2.80!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.58!2.80!HOXC5;;chr19:58545454..58545498,+!p1@ZSCAN1!0.58!2.80!ZSCAN1;;chr1:40105347..40105358,-!p2@HEYL!0.58!2.80!HEYL;;chrX:129402768..129402796,-!p2@ZNF280C!0.57!9.92!ZNF280C;;chr16:29819446..29819471,+!p9@MAZ!0.57!9.41!MAZ;;chr1:33721900..33721921,+!p2@ZNF362!0.57!7.63!ZNF362;;chr11:12696002..12696022,+!p2@TEAD1!0.57!7.63!TEAD1;;chr7:149470540..149470596,-!p2@ZNF467!0.57!3.81!ZNF467;;chr1:90460661..90460745,+!p1@ZNF326!0.56!93.06!ZNF326;;chr7:74072021..74072119,+!p1@GTF2I!0.56!86.20!GTF2I;;chr15:96873984..96873999,+!p3@NR2F2!0.56!23.65!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!0.56!16.78!CREB3L1;;chr12:53625966..53626012,-!p2@RARG!0.56!8.14!RARG;;chr20:62462566..62462631,-!p1@ZBTB46!0.56!5.59!ZBTB46;;chr19:58373157..5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Line 38: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoblastoma%2520cell%2520line%253aG-402.CNhs11848.10721-110A1.hg38.nobarcode.ctss.bed.gz
|id=FF:10721-110A1
|id=FF:10721-110A1
|is_a=EFO:0002091;;FF:0000210;;FF:0100678
|is_a=EFO:0002091;;FF:0000210;;FF:0100678
|is_obsolete=
|is_obsolete=
|library_id=CNhs11848
|library_id_phase_based=2:CNhs11848
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10721
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10721
|name=leiomyoblastoma cell line:G-402
|name=leiomyoblastoma cell line:G-402
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11848,LSID830,release010,COMPLETED
|profile_hcage=CNhs11848,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=cell lines
Line 85: Line 103:
|top_motifs=NKX2-3_NKX2-5:1.77497647426;SOX17:1.46496886664;HOX{A6,A7,B6,B7}:1.31694493038;NR5A1,2:1.26369526437;NRF1:1.24196021189;NANOG:1.18686136992;E2F1..5:1.12006850385;PAX8:1.09661800408;ZNF143:1.03378268985;PBX1:1.02378904987;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01990831076;STAT5{A,B}:0.994710969017;PITX1..3:0.958942310646;TEF:0.957799269337;AIRE:0.928141460761;POU1F1:0.893897911089;TP53:0.863052999693;PAX3,7:0.821982074613;EVI1:0.762539254891;ELK1,4_GABP{A,B1}:0.727574874776;RFX2..5_RFXANK_RFXAP:0.703242930043;HOX{A5,B5}:0.697063073218;RBPJ:0.674864719996;CREB1:0.638785412132;HOX{A4,D4}:0.633596906077;SOX{8,9,10}:0.615863841618;RFX1:0.609974204401;HES1:0.560384579966;LHX3,4:0.515368831888;TAL1_TCF{3,4,12}:0.513188016694;SRF:0.511876242351;FOXA2:0.473617244236;MYB:0.463178160552;RORA:0.46272879801;FOXP1:0.453962000882;BREu{core}:0.452900145303;NFY{A,B,C}:0.441717404737;CRX:0.430374245388;NR6A1:0.413765358224;VSX1,2:0.405627780528;CDC5L:0.379591383576;TEAD1:0.378163340729;YY1:0.340354314388;HIC1:0.311310156421;TFDP1:0.281800279903;SOX2:0.266236089085;ZNF384:0.253413089927;NKX3-1:0.241204932871;GFI1:0.231358811853;MEF2{A,B,C,D}:0.208629948926;EGR1..3:0.191249054256;HBP1_HMGB_SSRP1_UBTF:0.185126489325;ALX4:0.183416300134;PAX5:0.178799991183;GTF2A1,2:0.176329791788;LMO2:0.174521674421;POU2F1..3:0.172352420129;GATA6:0.137266945076;NKX6-1,2:0.136890689796;PATZ1:0.131476207808;TOPORS:0.125533757593;KLF4:0.124680057986;PRRX1,2:0.118860420875;NKX3-2:0.115778973113;MYBL2:0.115585174171;XCPE1{core}:0.109479929339;ADNP_IRX_SIX_ZHX:0.0983110797414;bHLH_family:0.0981010363556;JUN:0.0743730619167;SP1:0.0723054157147;ARID5B:0.0659622523918;TFAP2B:0.055008369008;AHR_ARNT_ARNT2:0.0372402319939;ZNF148:0.0228203948379;SNAI1..3:0.000828932074337;FOXD3:-0.00121997067474;HOXA9_MEIS1:-0.00226476521973;GATA4:-0.00320836729289;OCT4_SOX2{dimer}:-0.0168094460721;TBX4,5:-0.0455317213572;DBP:-0.052565057839;HAND1,2:-0.0766804855003;ZIC1..3:-0.0904000495387;ZBTB16:-0.110462915254;POU6F1:-0.114965069926;NKX2-2,8:-0.129178985939;CDX1,2,4:-0.129495148225;AR:-0.14544826796;FOXP3:-0.150522883505;ZFP161:-0.150814602102;EN1,2:-0.160747284802;HMGA1,2:-0.167415993104;FOSL2:-0.174850957795;ONECUT1,2:-0.175923371637;NR3C1:-0.180960295814;POU3F1..4:-0.197483655721;NFIL3:-0.197579527228;UFEwm:-0.199491011902;NR1H4:-0.203231319398;LEF1_TCF7_TCF7L1,2:-0.222779778744;HNF1A:-0.228385168384;FOS_FOS{B,L1}_JUN{B,D}:-0.232359462654;HLF:-0.233999220383;PPARG:-0.244673715886;NFE2:-0.248889590366;GTF2I:-0.262428611905;TFAP4:-0.266243169801;RXRA_VDR{dimer}:-0.289572580392;NFKB1_REL_RELA:-0.291516837219;BACH2:-0.293413122871;IKZF1:-0.304747246416;RREB1:-0.308836828094;ZBTB6:-0.308879524447;REST:-0.315862436002;ZEB1:-0.32028143008;MED-1{core}:-0.323185597886;HNF4A_NR2F1,2:-0.328243017616;ZNF238:-0.332369744997;ESR1:-0.349877742268;RXR{A,B,G}:-0.389965493795;FOX{I1,J2}:-0.395788605415;ATF5_CREB3:-0.399959661951;NFATC1..3:-0.401461745106;FOXQ1:-0.403596813388;MAFB:-0.413096610446;PAX4:-0.422165296556;PAX1,9:-0.427691968773;GFI1B:-0.462896886981;NFE2L1:-0.465206209253;XBP1:-0.488765724729;CUX2:-0.489807228197;SPIB:-0.493310246735;MTF1:-0.501174668943;RUNX1..3:-0.509209204164;TFAP2{A,C}:-0.544393462593;PRDM1:-0.555390758482;ATF6:-0.582878750754;TGIF1:-0.583280390219;CEBPA,B_DDIT3:-0.584049274088;TLX1..3_NFIC{dimer}:-0.590984015809;STAT2,4,6:-0.604611701998;ATF4:-0.608656177518;POU5F1:-0.609275876749;TFCP2:-0.626134592527;NFE2L2:-0.62870131161;GZF1:-0.636489570077;IKZF2:-0.639956396401;ALX1:-0.64167295005;ZNF423:-0.648409194;MZF1:-0.649867641468;FOXM1:-0.655027604043;DMAP1_NCOR{1,2}_SMARC:-0.656867790562;FOXL1:-0.667791006812;NHLH1,2:-0.672290366591;BPTF:-0.696058964384;SOX5:-0.716308170754;HSF1,2:-0.745562336072;ELF1,2,4:-0.748289396161;FOX{D1,D2}:-0.772646143555;TBP:-0.77267948294;FOX{F1,F2,J1}:-0.782569670871;STAT1,3:-0.792010536602;ETS1,2:-0.811021279027;T:-0.81831597884;PAX2:-0.82857200856;NANOG{mouse}:-0.832652826459;PDX1:-0.843568769548;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.848914610637;SPI1:-0.862580382391;FOXN1:-0.863103732087;SPZ1:-0.865883817732;ESRRA:-0.876042508353;MYFfamily:-0.918188318321;SREBF1,2:-0.928671464093;MYOD1:-0.967181803706;ATF2:-0.977677928139;HMX1:-0.984263577825;MAZ:-0.994818932059;EBF1:-1.02609633358;GLI1..3:-1.06521641697;GCM1,2:-1.0699375096;NKX2-1,4:-1.08772670923;IRF7:-1.10148581968;IRF1,2:-1.13206996724;NFIX:-1.28206840258;PAX6:-1.33882416035;MTE{core}:-1.3747394095;SMAD1..7,9:-1.47618032086;FOXO1,3,4:-1.63428772474;TLX2:-1.84478455172;HIF1A:-1.87339701306;EP300:-2.12746910896
|top_motifs=NKX2-3_NKX2-5:1.77497647426;SOX17:1.46496886664;HOX{A6,A7,B6,B7}:1.31694493038;NR5A1,2:1.26369526437;NRF1:1.24196021189;NANOG:1.18686136992;E2F1..5:1.12006850385;PAX8:1.09661800408;ZNF143:1.03378268985;PBX1:1.02378904987;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01990831076;STAT5{A,B}:0.994710969017;PITX1..3:0.958942310646;TEF:0.957799269337;AIRE:0.928141460761;POU1F1:0.893897911089;TP53:0.863052999693;PAX3,7:0.821982074613;EVI1:0.762539254891;ELK1,4_GABP{A,B1}:0.727574874776;RFX2..5_RFXANK_RFXAP:0.703242930043;HOX{A5,B5}:0.697063073218;RBPJ:0.674864719996;CREB1:0.638785412132;HOX{A4,D4}:0.633596906077;SOX{8,9,10}:0.615863841618;RFX1:0.609974204401;HES1:0.560384579966;LHX3,4:0.515368831888;TAL1_TCF{3,4,12}:0.513188016694;SRF:0.511876242351;FOXA2:0.473617244236;MYB:0.463178160552;RORA:0.46272879801;FOXP1:0.453962000882;BREu{core}:0.452900145303;NFY{A,B,C}:0.441717404737;CRX:0.430374245388;NR6A1:0.413765358224;VSX1,2:0.405627780528;CDC5L:0.379591383576;TEAD1:0.378163340729;YY1:0.340354314388;HIC1:0.311310156421;TFDP1:0.281800279903;SOX2:0.266236089085;ZNF384:0.253413089927;NKX3-1:0.241204932871;GFI1:0.231358811853;MEF2{A,B,C,D}:0.208629948926;EGR1..3:0.191249054256;HBP1_HMGB_SSRP1_UBTF:0.185126489325;ALX4:0.183416300134;PAX5:0.178799991183;GTF2A1,2:0.176329791788;LMO2:0.174521674421;POU2F1..3:0.172352420129;GATA6:0.137266945076;NKX6-1,2:0.136890689796;PATZ1:0.131476207808;TOPORS:0.125533757593;KLF4:0.124680057986;PRRX1,2:0.118860420875;NKX3-2:0.115778973113;MYBL2:0.115585174171;XCPE1{core}:0.109479929339;ADNP_IRX_SIX_ZHX:0.0983110797414;bHLH_family:0.0981010363556;JUN:0.0743730619167;SP1:0.0723054157147;ARID5B:0.0659622523918;TFAP2B:0.055008369008;AHR_ARNT_ARNT2:0.0372402319939;ZNF148:0.0228203948379;SNAI1..3:0.000828932074337;FOXD3:-0.00121997067474;HOXA9_MEIS1:-0.00226476521973;GATA4:-0.00320836729289;OCT4_SOX2{dimer}:-0.0168094460721;TBX4,5:-0.0455317213572;DBP:-0.052565057839;HAND1,2:-0.0766804855003;ZIC1..3:-0.0904000495387;ZBTB16:-0.110462915254;POU6F1:-0.114965069926;NKX2-2,8:-0.129178985939;CDX1,2,4:-0.129495148225;AR:-0.14544826796;FOXP3:-0.150522883505;ZFP161:-0.150814602102;EN1,2:-0.160747284802;HMGA1,2:-0.167415993104;FOSL2:-0.174850957795;ONECUT1,2:-0.175923371637;NR3C1:-0.180960295814;POU3F1..4:-0.197483655721;NFIL3:-0.197579527228;UFEwm:-0.199491011902;NR1H4:-0.203231319398;LEF1_TCF7_TCF7L1,2:-0.222779778744;HNF1A:-0.228385168384;FOS_FOS{B,L1}_JUN{B,D}:-0.232359462654;HLF:-0.233999220383;PPARG:-0.244673715886;NFE2:-0.248889590366;GTF2I:-0.262428611905;TFAP4:-0.266243169801;RXRA_VDR{dimer}:-0.289572580392;NFKB1_REL_RELA:-0.291516837219;BACH2:-0.293413122871;IKZF1:-0.304747246416;RREB1:-0.308836828094;ZBTB6:-0.308879524447;REST:-0.315862436002;ZEB1:-0.32028143008;MED-1{core}:-0.323185597886;HNF4A_NR2F1,2:-0.328243017616;ZNF238:-0.332369744997;ESR1:-0.349877742268;RXR{A,B,G}:-0.389965493795;FOX{I1,J2}:-0.395788605415;ATF5_CREB3:-0.399959661951;NFATC1..3:-0.401461745106;FOXQ1:-0.403596813388;MAFB:-0.413096610446;PAX4:-0.422165296556;PAX1,9:-0.427691968773;GFI1B:-0.462896886981;NFE2L1:-0.465206209253;XBP1:-0.488765724729;CUX2:-0.489807228197;SPIB:-0.493310246735;MTF1:-0.501174668943;RUNX1..3:-0.509209204164;TFAP2{A,C}:-0.544393462593;PRDM1:-0.555390758482;ATF6:-0.582878750754;TGIF1:-0.583280390219;CEBPA,B_DDIT3:-0.584049274088;TLX1..3_NFIC{dimer}:-0.590984015809;STAT2,4,6:-0.604611701998;ATF4:-0.608656177518;POU5F1:-0.609275876749;TFCP2:-0.626134592527;NFE2L2:-0.62870131161;GZF1:-0.636489570077;IKZF2:-0.639956396401;ALX1:-0.64167295005;ZNF423:-0.648409194;MZF1:-0.649867641468;FOXM1:-0.655027604043;DMAP1_NCOR{1,2}_SMARC:-0.656867790562;FOXL1:-0.667791006812;NHLH1,2:-0.672290366591;BPTF:-0.696058964384;SOX5:-0.716308170754;HSF1,2:-0.745562336072;ELF1,2,4:-0.748289396161;FOX{D1,D2}:-0.772646143555;TBP:-0.77267948294;FOX{F1,F2,J1}:-0.782569670871;STAT1,3:-0.792010536602;ETS1,2:-0.811021279027;T:-0.81831597884;PAX2:-0.82857200856;NANOG{mouse}:-0.832652826459;PDX1:-0.843568769548;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.848914610637;SPI1:-0.862580382391;FOXN1:-0.863103732087;SPZ1:-0.865883817732;ESRRA:-0.876042508353;MYFfamily:-0.918188318321;SREBF1,2:-0.928671464093;MYOD1:-0.967181803706;ATF2:-0.977677928139;HMX1:-0.984263577825;MAZ:-0.994818932059;EBF1:-1.02609633358;GLI1..3:-1.06521641697;GCM1,2:-1.0699375096;NKX2-1,4:-1.08772670923;IRF7:-1.10148581968;IRF1,2:-1.13206996724;NFIX:-1.28206840258;PAX6:-1.33882416035;MTE{core}:-1.3747394095;SMAD1..7,9:-1.47618032086;FOXO1,3,4:-1.63428772474;TLX2:-1.84478455172;HIF1A:-1.87339701306;EP300:-2.12746910896
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10721-110A1;search_select_hide=table117:FF:10721-110A1
}}
}}

Latest revision as of 15:01, 3 June 2020

Name:leiomyoblastoma cell line:G-402
Species:Human (Homo sapiens)
Library ID:CNhs11848
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexfemale
age9 months
cell typeunclassifiable
cell lineG-402
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005185
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11848 CAGE DRX007914 DRR008786
Accession ID Hg19

Library idBAMCTSS
CNhs11848 DRZ000211 DRZ001596
Accession ID Hg38

Library idBAMCTSS
CNhs11848 DRZ011561 DRZ012946
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005185
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10080 RNA-Seq DRX057137 DRR062896
Accession ID Hg19

Library idBAMCTSS
RDhi10080 DRZ007972


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.083
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.467
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0742
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.162
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic1.137
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0215
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0194
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0984
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.373
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.246
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.246
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0427
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.47
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.179
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0984
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11848

Jaspar motifP-value
MA0002.20.0804
MA0003.10.23
MA0004.10.955
MA0006.10.351
MA0007.10.613
MA0009.10.11
MA0014.10.346
MA0017.10.135
MA0018.20.0239
MA0019.10.0822
MA0024.14.83008e-5
MA0025.10.375
MA0027.10.0826
MA0028.10.0205
MA0029.10.724
MA0030.10.0414
MA0031.10.0233
MA0035.20.241
MA0038.10.435
MA0039.20.0283
MA0040.10.199
MA0041.10.542
MA0042.10.615
MA0043.10.065
MA0046.10.102
MA0047.20.478
MA0048.10.0459
MA0050.11.77063e-7
MA0051.11.22213e-6
MA0052.10.874
MA0055.11.30614e-5
MA0057.10.933
MA0058.10.425
MA0059.10.795
MA0060.11.00131e-4
MA0061.10.00305
MA0062.20.263
MA0065.20.498
MA0066.10.813
MA0067.10.605
MA0068.10.114
MA0069.10.672
MA0070.10.177
MA0071.10.369
MA0072.10.81
MA0073.10.686
MA0074.10.138
MA0076.10.00654
MA0077.10.122
MA0078.10.142
MA0079.20.372
MA0080.21.63846e-13
MA0081.10.0403
MA0083.10.302
MA0084.10.138
MA0087.10.213
MA0088.15.45341e-5
MA0090.10.837
MA0091.10.174
MA0092.10.58
MA0093.10.854
MA0099.21.79774e-6
MA0100.10.499
MA0101.10.159
MA0102.20.141
MA0103.10.828
MA0104.20.0301
MA0105.10.0276
MA0106.10.0309
MA0107.10.00896
MA0108.20.00388
MA0111.10.897
MA0112.20.151
MA0113.10.053
MA0114.10.187
MA0115.10.876
MA0116.10.137
MA0117.10.526
MA0119.10.36
MA0122.10.9
MA0124.10.669
MA0125.10.699
MA0131.10.509
MA0135.10.0178
MA0136.14.20819e-11
MA0137.20.036
MA0138.20.595
MA0139.10.583
MA0140.10.361
MA0141.10.326
MA0142.10.0769
MA0143.10.349
MA0144.10.00532
MA0145.10.237
MA0146.10.00421
MA0147.10.00134
MA0148.10.256
MA0149.10.33
MA0150.10.0189
MA0152.10.513
MA0153.10.0981
MA0154.10.0291
MA0155.10.756
MA0156.11.07929e-5
MA0157.10.00146
MA0159.10.191
MA0160.10.532
MA0162.10.287
MA0163.10.508
MA0164.10.482
MA0258.10.64
MA0259.10.0439



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11848

Novel motifP-value
10.338
100.33
1000.0639
1010.647
1020.998
1030.222
1040.504
1050.834
1063.09753e-6
1070.0152
1080.989
1090.0133
110.366
1100.208
1110.536
1120.34
1130.0145
1140.493
1150.932
1160.584
1170.11
1180.837
1190.134
120.434
1200.717
1210.0811
1220.815
1230.218
1240.838
1250.931
1260.837
1270.583
1280.00116
1290.702
130.0359
1300.959
1310.351
1320.542
1330.00657
1340.356
1350.125
1360.0497
1370.622
1380.513
1390.151
140.395
1400.24
1410.538
1420.807
1430.0619
1440.697
1450.492
1460.295
1470.408
1480.545
1490.0339
150.498
1500.0915
1510.265
1520.975
1530.118
1540.967
1550.316
1560.786
1570.643
1580.331
1590.251
160.648
1600.928
1610.644
1620.153
1630.0499
1640.972
1650.315
1660.163
1670.761
1680.0146
1690.721
170.399
180.206
190.421
20.0938
200.123
210.885
220.936
230.00211
240.956
250.633
260.564
270.243
280.966
290.475
30.504
300.302
310.27
320.877
330.974
340.477
350.597
360.0774
370.815
380.484
390.389
40.912
400.00932
410.0906
420.0875
430.247
440.481
450.0512
460.681
470.0347
480.182
490.983
50.184
500.9
510.945
520.123
530.575
540.595
550.737
560.687
570.383
580.0919
590.0937
60.895
600.0592
610.361
620.202
630.961
640.536
650.0291
660.0563
670.927
680.116
690.468
70.372
700.767
710.918
720.138
730.442
740.161
750.0847
760.809
770.477
780.933
790.18
80.112
800.0228
810.617
820.711
830.706
840.982
850.0406
860.581
870.105
880.0904
890.651
90.281
900.944
910.0494
920.0604
930.753
940.984
950.00165
960.855
970.823
980.408
990.601



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11848


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
7 (disease of anatomical entity)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)
0100678 (G-402 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

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