FF:10730-110B1: Difference between revisions

Latest revision as of 15:02, 3 June 2020

Name:	non-small cell lung cancer cell line:NCI-H1385
Species:	Human (Homo sapiens)
Library ID:	CNhs12193
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	female
age	49
cell type	neuroendocrine cell
cell line	NCI-H1385
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00006019

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12193		CAGE		DRX007775		DRR008647

Accession ID Hg19

Library id		BAM		CTSS
CNhs12193		DRZ000072		DRZ001457

Accession ID Hg38

Library id		BAM		CTSS
CNhs12193		DRZ011422		DRZ012807

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0407
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.423
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0144
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.259
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.298
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.405
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.643
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.205
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	1.539
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.418
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12193

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00522
MA0003.1	MA0003.1	0.319
MA0004.1	MA0004.1	0.917
MA0006.1	MA0006.1	0.22
MA0007.1	MA0007.1	0.124
MA0009.1	MA0009.1	0.578
MA0014.1	MA0014.1	0.597
MA0017.1	MA0017.1	0.0519
MA0018.2	MA0018.2	1.74867e-5
MA0019.1	MA0019.1	0.877
MA0024.1	MA0024.1	8.52742e-5
MA0025.1	MA0025.1	0.00204
MA0027.1	MA0027.1	0.84
MA0028.1	MA0028.1	0.00749
MA0029.1	MA0029.1	0.396
MA0030.1	MA0030.1	0.111
MA0031.1	MA0031.1	0.477
MA0035.2	MA0035.2	0.26
MA0038.1	MA0038.1	2.38732e-6
MA0039.2	MA0039.2	0.341
MA0040.1	MA0040.1	0.744
MA0041.1	MA0041.1	0.34
MA0042.1	MA0042.1	0.871
MA0043.1	MA0043.1	0.00719
MA0046.1	MA0046.1	0.405
MA0047.2	MA0047.2	0.0128
MA0048.1	MA0048.1	0.0585
MA0050.1	MA0050.1	7.86532e-17
MA0051.1	MA0051.1	3.54612e-8
MA0052.1	MA0052.1	0.231
MA0055.1	MA0055.1	0.295
MA0057.1	MA0057.1	0.243
MA0058.1	MA0058.1	0.553
MA0059.1	MA0059.1	0.551
MA0060.1	MA0060.1	4.17969e-20
MA0061.1	MA0061.1	0.00649
MA0062.2	MA0062.2	0.00359
MA0065.2	MA0065.2	0.0162
MA0066.1	MA0066.1	0.169
MA0067.1	MA0067.1	0.625
MA0068.1	MA0068.1	0.888
MA0069.1	MA0069.1	0.545
MA0070.1	MA0070.1	0.0172
MA0071.1	MA0071.1	0.826
MA0072.1	MA0072.1	0.188
MA0073.1	MA0073.1	0.381
MA0074.1	MA0074.1	0.131
MA0076.1	MA0076.1	3.89119e-4
MA0077.1	MA0077.1	0.232
MA0078.1	MA0078.1	0.773
MA0079.2	MA0079.2	0.742
MA0080.2	MA0080.2	9.37168e-10
MA0081.1	MA0081.1	0.268
MA0083.1	MA0083.1	0.00315
MA0084.1	MA0084.1	0.627
MA0087.1	MA0087.1	0.566
MA0088.1	MA0088.1	0.33
MA0090.1	MA0090.1	0.00198
MA0091.1	MA0091.1	0.162
MA0092.1	MA0092.1	0.214
MA0093.1	MA0093.1	0.65
MA0099.2	MA0099.2	2.57262e-4
MA0100.1	MA0100.1	0.128
MA0101.1	MA0101.1	0.0115
MA0102.2	MA0102.2	0.0311
MA0103.1	MA0103.1	0.0072
MA0104.2	MA0104.2	0.276
MA0105.1	MA0105.1	0.00667
MA0106.1	MA0106.1	0.309
MA0107.1	MA0107.1	0.0116
MA0108.2	MA0108.2	0.0481
MA0111.1	MA0111.1	0.698
MA0112.2	MA0112.2	0.00125
MA0113.1	MA0113.1	0.143
MA0114.1	MA0114.1	0.0977
MA0115.1	MA0115.1	0.632
MA0116.1	MA0116.1	0.00826
MA0117.1	MA0117.1	0.306
MA0119.1	MA0119.1	0.0399
MA0122.1	MA0122.1	0.729
MA0124.1	MA0124.1	0.473
MA0125.1	MA0125.1	0.00544
MA0131.1	MA0131.1	0.232
MA0135.1	MA0135.1	0.707
MA0136.1	MA0136.1	2.42471e-5
MA0137.2	MA0137.2	0.852
MA0138.2	MA0138.2	0.356
MA0139.1	MA0139.1	0.867
MA0140.1	MA0140.1	0.341
MA0141.1	MA0141.1	0.673
MA0142.1	MA0142.1	0.434
MA0143.1	MA0143.1	0.72
MA0144.1	MA0144.1	0.195
MA0145.1	MA0145.1	0.202
MA0146.1	MA0146.1	0.03
MA0147.1	MA0147.1	0.448
MA0148.1	MA0148.1	0.0631
MA0149.1	MA0149.1	0.232
MA0150.1	MA0150.1	0.777
MA0152.1	MA0152.1	0.925
MA0153.1	MA0153.1	0.52
MA0154.1	MA0154.1	0.0249
MA0155.1	MA0155.1	0.4
MA0156.1	MA0156.1	0.0248
MA0157.1	MA0157.1	0.979
MA0159.1	MA0159.1	0.0472
MA0160.1	MA0160.1	0.916
MA0162.1	MA0162.1	0.0987
MA0163.1	MA0163.1	6.38834e-5
MA0164.1	MA0164.1	0.0851
MA0258.1	MA0258.1	0.035
MA0259.1	MA0259.1	0.284

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12193

Novel motif	Logo	P-value
1	1	0.237
10	10	0.154
100	100	0.425
101	101	0.491
102	102	0.27
103	103	0.444
104	104	0.684
105	105	0.518
106	106	6.41911e-5
107	107	0.0191
108	108	0.614
109	109	0.112
11	11	0.125
110	110	0.215
111	111	0.0317
112	112	0.116
113	113	0.64
114	114	0.0219
115	115	0.376
116	116	0.16
117	117	0.0579
118	118	0.322
119	119	0.169
12	12	0.962
120	120	0.739
121	121	0.994
122	122	0.184
123	123	0.15
124	124	0.572
125	125	0.9
126	126	0.1
127	127	0.567
128	128	0.0344
129	129	0.966
13	13	0.0391
130	130	0.316
131	131	0.775
132	132	0.567
133	133	0.199
134	134	0.468
135	135	0.724
136	136	0.493
137	137	0.0792
138	138	0.486
139	139	0.0146
14	14	0.611
140	140	0.685
141	141	0.98
142	142	0.945
143	143	0.429
144	144	0.256
145	145	0.0446
146	146	0.773
147	147	0.804
148	148	0.00247
149	149	0.0755
15	15	0.201
150	150	0.24
151	151	0.235
152	152	0.0232
153	153	0.223
154	154	0.79
155	155	0.893
156	156	0.742
157	157	0.79
158	158	0.905
159	159	0.294
16	16	0.143
160	160	0.155
161	161	0.595
162	162	0.19
163	163	0.695
164	164	0.0737
165	165	0.199
166	166	0.469
167	167	0.192
168	168	0.106
169	169	0.00308
17	17	0.219
18	18	0.32
19	19	0.0383
2	2	0.679
20	20	0.438
21	21	0.035
22	22	0.116
23	23	0.0315
24	24	0.485
25	25	0.945
26	26	0.0132
27	27	0.662
28	28	0.74
29	29	0.273
3	3	0.125
30	30	0.93
31	31	0.747
32	32	0.00325
33	33	0.428
34	34	0.232
35	35	0.544
36	36	0.703
37	37	0.159
38	38	0.383
39	39	0.0679
4	4	0.533
40	40	0.176
41	41	0.465
42	42	0.907
43	43	0.0623
44	44	0.678
45	45	0.654
46	46	0.297
47	47	0.637
48	48	0.296
49	49	0.203
5	5	0.318
50	50	0.0492
51	51	0.628
52	52	0.054
53	53	0.542
54	54	0.274
55	55	0.125
56	56	0.867
57	57	0.489
58	58	0.482
59	59	0.0435
6	6	0.736
60	60	0.00613
61	61	0.0482
62	62	0.227
63	63	0.0145
64	64	0.649
65	65	0.192
66	66	0.117
67	67	0.961
68	68	0.734
69	69	0.333
7	7	0.499
70	70	0.0589
71	71	0.107
72	72	0.206
73	73	0.0556
74	74	0.649
75	75	0.249
76	76	0.262
77	77	0.137
78	78	0.0365
79	79	0.0388
8	8	0.129
80	80	0.639
81	81	0.232
82	82	0.147
83	83	0.714
84	84	0.608
85	85	0.0772
86	86	0.417
87	87	0.777
88	88	0.724
89	89	0.699
9	9	0.291
90	90	0.138
91	91	0.157
92	92	0.313
93	93	0.161
94	94	0.355
95	95	0.996
96	96	0.954
97	97	0.679
98	98	0.799
99	99	0.712

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12193

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002553 lung fibroblast
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102553 non-small cell lung cancer cell line sample
FF:0103764 NCI cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002553 (lung fibroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1115 (sarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0101120 (epithelial cell line sample)
0100460 (fibrosarcoma cell line sample)
0100762 (lung cancer cell line sample)
0102553 (non-small cell lung cancer cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007670
+|DRA_sample_Accession=CAGE@SAMD00006019
-|accession_numbers=CAGE;DRX007775;DRR008647;DRZ000072;DRZ001457
+|accession_numbers=CAGE;DRX007775;DRR008647;DRZ000072;DRZ001457;DRZ011422;DRZ012807
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000082,CL:0000255,CL:0000057,CL:0002553
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.70!501.96!ASCL1;;chr17:46622205..46622218,-!p3@HOXB2!2.41!292.21!HOXB2;;chrX:30327504..30327509,-!p1@NR0B1!2.35!224.96!NR0B1;;chr8:53166899..53166914,-!p3@ST18!2.28!190.54!ST18;;chr13:79177674..79177701,-!p1@POU4F1!2.18!152.11!POU4F1;;chr20:20348740..20348757,+!p1@INSM1!2.18!151.31!INSM1;;chr17:46703687..46703740,-!p1@HOXB9!2.14!136.10!HOXB9;;chr18:55102598..55102623,+!p1@ONECUT2!1.93!84.06!ONECUT2;;chr1:151032860..151032918,+!p1@MLLT11!1.88!835.80!MLLT11;;chr18:55102628..55102646,+!p2@ONECUT2!1.88!75.25!ONECUT2;;chr1:201979743..201979762,+!p1@ELF3!1.88!74.45!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.82!65.65!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.78!59.24!FOXA1;;chr8:53162037..53162058,-!p5@ST18!1.77!57.64!ST18;;chr17:46703826..46703845,-!p3@HOXB9!1.72!52.04!HOXB9;;chr17:46622229..46622257,-!p6@HOXB2!1.70!56.84!HOXB2;;chr2:176972000..176972025,+!p4@HOXD11!1.70!48.83!HOXD11;;chr17:46675558..46675577,-!p2@HOXB6!1.67!45.63!HOXB6;;chr2:242556880..242556899,-!p5@THAP4!1.62!40.83!THAP4;;chr17:46692457..46692484,-!p2@HOXB8!1.61!40.03!HOXB8;;chr2:5832508..5832524,+!p1@SOX11!1.59!37.63!SOX11;;chr2:176973498..176973524,+!p1@HOXD10!1.57!36.03!HOXD10;;chr17:46622440..46622477,-!p5@HOXB2!1.55!38.43!HOXB2;;chr1:151032922..151032951,+!p2@MLLT11!1.52!52.84!MLLT11;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.02!MYT1L;;chr14:29235961..29236008,+!p1@FOXG1!1.52!32.02!FOXG1;;chr6:19837592..19837621,+!p1@ID4!1.48!171.32!ID4;;chr2:242556900..242556916,-!p6@THAP4!1.45!27.22!THAP4;;chr14:36989427..36989442,-!p1@NKX2-1!1.43!25.62!NKX2-1;;chr17:46682321..46682362,-!p1@HOXB6!1.43!25.62!HOXB6;;chr1:151032782..151032801,+!p4@MLLT11!1.42!49.64!MLLT11;;chr18:55102806..55102847,+!p3@ONECUT2!1.41!24.82!ONECUT2;;chr17:46692624..46692659,-!p3@HOXB8!1.40!24.02!HOXB8;;chr18:72922743..72922761,+!p3@TSHZ1!1.38!73.65!TSHZ1;;chr10:135122906..135122921,+!p4@ZNF511!1.38!23.22!ZNF511;;chr8:53161967..53161974,-!p11@ST18!1.37!22.42!ST18;;chr9:96717629..96717644,-!p1@BARX1!1.37!22.42!BARX1;;chr17:46692603..46692621,-!p6@HOXB8!1.37!22.42!HOXB8;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.36!200.14!ZNF595;;chr1:164528687..164528711,+!p6@PBX1!1.36!25.62!PBX1;;chr1:214161272..214161322,+!p1@PROX1!1.35!29.62!PROX1;;chr17:46667594..46667619,-!p1@HOXB3!1.35!21.62!HOXB3;;chr6:28321971..28321995,-!p1@ZNF323!1.34!20.81!ZNF323;;chr20:30193083..30193098,+!p1@ID1!1.31!1509.08!ID1;;chr1:151032833..151032850,+!p3@MLLT11!1.31!43.23!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!1.31!43.23!HOXB2;;chr8:60031809..60031835,-!p4@TOX!1.30!24.02!TOX;;chr2:176971685..176971700,+!p6@HOXD11!1.27!17.61!HOXD11;;chr2:176973275..176973300,+!p4@HOXD10!1.27!17.61!HOXD10;;chr17:46675619..46675642,-!p5@HOXB6!1.27!17.61!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!1.25!16.81!HOXB8;;chr17:46671108..46671147,-!p1@HOXB5!1.23!16.01!HOXB5;;chr18:55102959..55102985,+!p6@ONECUT2!1.23!16.01!ONECUT2;;chr13:79177703..79177729,-!p2@POU4F1!1.23!16.01!POU4F1;;chr2:176981499..176981522,+!p2@HOXD10!1.21!15.21!HOXD10;;chr1:151032739..151032748,+!p6@MLLT11!1.20!18.41!MLLT11;;chr20:22564895..22564910,-!p1@FOXA2!1.19!14.41!FOXA2;;chr8:73921136..73921151,+!p2@TERF1!1.17!20.81!TERF1;;chr2:166326200..166326216,+!p1@CSRNP3!1.17!20.01!CSRNP3;;chr2:219849805..219849819,-!p3@FEV!1.16!13.61!FEV;;chr1:27240455..27240474,-!p1@NR0B2!1.16!13.61!NR0B2;;chr20:22565370..22565388,-!p2@FOXA2!1.14!12.81!FOXA2;;chr2:176981526..176981543,+!p3@HOXD10!1.14!12.81!HOXD10;;chr17:46622175..46622186,-!p12@HOXB2!1.14!12.81!HOXB2;;chr6:28321909..28321965,-!p3@ZNF323!1.14!12.81!ZNF323;;chr8:40755333..40755352,-!p1@ZMAT4!1.14!12.81!ZMAT4;;chr14:37131058..37131139,+!p1@PAX9!1.14!12.81!PAX9;;chr17:46622114..46622138,-!p4@HOXB2!1.13!19.21!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!1.13!14.41!HOXB6;;chr1:211433275..211433335,+!p2@RCOR3!1.11!36.83!RCOR3;;chr17:46691990..46692004,-!p11@HOXB8!1.11!12.01!HOXB8;;chr10:135122868..135122893,+!p3@ZNF511!1.11!12.01!ZNF511;;chr2:176994408..176994492,+!p1@HOXD8!1.11!12.01!HOXD8;;chr5:2751762..2751784,-!p1@IRX2!1.11!12.01!IRX2;;chr8:53162019..53162028,-!p12@ST18!1.11!12.01!ST18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!12.01!ZBED1;;chr18:45935720..45935772,-!p1@ZBTB7C!1.09!11.21!ZBTB7C;;chr2:219849784..219849798,-!p5@FEV!1.09!11.21!FEV;;chr2:45236540..45236577,-!p1@SIX2!1.09!11.21!SIX2;;chr2:176971980..176971995,+!p9@HOXD11!1.06!10.41!HOXD11;;chr2:5832493..5832507,+!p2@SOX11!1.06!10.41!SOX11;;chr1:216896752..216896778,-!p1@ESRRG!1.06!10.41!ESRRG;;chr20:22565185..22565223,-!p3@FOXA2!1.06!10.41!FOXA2;;chr12:103352277..103352324,+!p2@ASCL1!1.06!10.41!ASCL1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.06!10.41!SEBOX;;chr17:46703528..46703549,-!p5@HOXB9!1.06!10.41!HOXB9;;chr7:63505799..63505904,+!p1@ZNF727!1.06!10.41!ZNF727;;chr7:149470641..149470694,-!p1@ZNF467!1.05!47.23!ZNF467;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.21!IRF6;;chr8:124286670..124286702,-!p3@ZHX1!1.03!16.81!ZHX1;;chr8:60031762..60031803,-!p3@TOX!1.03!14.41!TOX;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.41!MAFG;;chr17:46692287..46692317,-!p7@HOXB8!1.03!9.61!HOXB8;;chr2:219849644..219849655,-!p7@FEV!1.03!9.61!FEV;;chr14:38064590..38064606,-!p2@FOXA1!1.03!9.61!FOXA1;;chr8:60031619..60031676,-!p1@TOX!1.02!20.81!TOX;;chr15:57511609..57511651,+!p2@TCF12!1.02!16.01!TCF12;;chr19:22817119..22817145,+!p1@ZNF492!1.00!15.21!ZNF492;;chr17:53342311..53342400,+!p1@HLF!1.00!10.41!HLF;;chr1:41827095..41827155,+!p1@FOXO6!0.99!12.01!FOXO6;;chr5:2751785..2751808,-!p2@IRX2!0.99!8.81!IRX2;;chr14:36989358..36989378,-!p3@NKX2-1!0.99!8.81!NKX2-1;;chr2:85981107..85981120,+!p3@ATOH8!0.99!8.81!ATOH8;;chr5:321810..321877,+!p1@AHRR!0.98!28.02!AHRR;;chr17:46667561..46667572,-!p4@HOXB3!0.95!8.01!HOXB3;;chr2:176972082..176972096,+!p8@HOXD11!0.95!8.01!HOXD11;;chr2:176981546..176981557,+!p5@HOXD10!0.95!8.01!HOXD10;;chr2:177001290..177001315,+!p1@HOXD3!0.95!8.01!HOXD3;;chr2:2335109..2335134,-!p2@MYT1L!0.95!8.01!MYT1L;;chr2:74374995..74375055,-!p1@BOLA3!0.94!353.05!BOLA3;;chr5:124084493..124084524,-!p2@ZNF608!0.94!17.61!ZNF608;;chrX:128657413..128657456,-!p2@SMARCA1!0.93!67.25!SMARCA1;;chrX:84498989..84499003,+!p1@ZNF711!0.93!10.41!ZNF711;;chr17:46687959..46688007,-!p2@HOXB7!0.93!10.41!HOXB7;;chr19:19976683..19976709,+!p1@ZNF253!0.92!33.62!ZNF253;;chr17:46675539..46675551,-!p7@HOXB6!0.91!7.21!HOXB6;;chr8:53166916..53166925,-!p10@ST18!0.91!7.21!ST18;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.21!TFCP2L1;;chr2:176957443..176957457,+!p1@HOXD13!0.91!7.21!HOXD13;;chr1:216896780..216896800,-!p2@ESRRG!0.91!7.21!ESRRG;;chr1:217262933..217262968,-!p3@ESRRG!0.91!7.21!ESRRG;;chr20:62795799..62795819,+!p1@MYT1!0.91!7.21!MYT1;;chr14:29236269..29236285,+!p3@FOXG1!0.91!7.21!FOXG1;;chr2:8822176..8822196,+!p1@ID2!0.90!1023.93!ID2;;chr19:23869970..23869991,-!p1@ZNF675!0.89!27.22!ZNF675;;chr10:35484053..35484076,+!p1@CREM!0.89!17.61!CREM;;chr19:38085768..38085821,+!p1@ZNF540!0.89!10.41!ZNF540;;chr2:74375058..74375069,-!p3@BOLA3!0.88!12.81!BOLA3;;chr1:149858461..149858479,+!p1@BOLA1!0.87!2673.11!BOLA1;;chr17:46671504..46671541,-!p2@HOXB5!0.87!6.40!HOXB5;;chr17:48072574..48072597,-!p1@DLX3!0.87!6.40!DLX3;;chr14:29237009..29237049,+!p4@FOXG1!0.87!6.40!FOXG1;;chr14:36989379..36989390,-!p8@NKX2-1!0.87!6.40!NKX2-1;;chr2:176972047..176972063,+!p7@HOXD11!0.87!6.40!HOXD11;;chr2:219849012..219849065,-!p1@FEV!0.87!6.40!FEV;;chr2:219849897..219849928,-!p2@FEV!0.87!6.40!FEV;;chr2:2328725..2328739,-!p5@MYT1L!0.87!6.40!MYT1L;;chr4:188916918..188916942,+!p1@ZFP42!0.87!6.40!ZFP42;;chr17:46621937..46621966,-!p2@HOXB2!0.86!17.61!HOXB2;;chr1:164528340..164528379,+!p4@PBX1!0.86!16.01!PBX1;;chr8:60031682..60031710,-!p2@TOX!0.86!10.41!TOX;;chr10:22292591..22292606,-!p2@DNAJC1!0.86!10.41!DNAJC1;;chr8:37553261..37553282,+!p2@ZNF703!0.85!49.64!ZNF703;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.85!13.61!ZNF395;;chr19:23941647..23941672,-!p2@ZNF681!0.85!10.41!ZNF681;;chr12:54785074..54785122,-!p2@ZNF385A!0.85!9.61!ZNF385A;;chr12:52445218..52445237,+!p1@NR4A1!0.83!77.66!NR4A1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.83!34.42!ZNF10;;chr2:239148671..239148686,-!p1@HES6!0.83!22.42!HES6;;chr19:21265028..21265052,+!p2@ZNF714!0.82!10.41!ZNF714;;chr1:10754477..10754517,-!p1@CASZ1!0.82!9.61!CASZ1;;chr1:165414325..165414369,-!p1@RXRG!0.82!5.60!RXRG;;chr17:46621146..46621180,-!p10@HOXB2!0.82!5.60!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.82!5.60!HOXB6;;chr17:7197911..7197964,-!p1@YBX2!0.82!5.60!YBX2;;chr12:115121770..115121781,-!p4@TBX3!0.82!5.60!TBX3;;chr12:24102576..24102623,-!p2@SOX5!0.82!5.60!SOX5;;chr14:36990061..36990072,-!p11@NKX2-1!0.82!5.60!NKX2-1;;chr2:45236579..45236596,-!p2@SIX2!0.82!5.60!SIX2;;chr3:147111198..147111225,+!p4@ZIC1!0.82!5.60!ZIC1;;chr4:57547454..57547469,-!p1@HOPX!0.82!5.60!HOPX;;chr17:4981745..4981810,+!p1@ZFP3!0.81!28.82!ZFP3;;chr1:247267618..247267674,-!p1@ZNF669!0.80!45.63!ZNF669;;chr7:150974206..150974255,-!p1@SMARCD3!0.80!36.03!SMARCD3;;chr17:46688334..46688385,-!p1@HOXB7!0.80!8.01!HOXB7;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.02!ETV4;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.21!VAX2;;chr2:85981222..85981259,+!p2@ATOH8!0.79!8.81!ATOH8;;chr17:46621101..46621143,-!p7@HOXB2!0.79!7.21!HOXB2;;chr12:54772960..54773015,-!p3@ZNF385A!0.78!26.42!ZNF385A;;chr21:47063625..47063658,+!p1@PCBP3!0.78!24.02!PCBP3;;chr3:18486354..18486377,-!p2@SATB1!0.78!6.40!SATB1;;chr1:249132410..249132456,+!p1@ZNF672!0.77!40.03!ZNF672;;chr6:91006518..91006570,-!p1@BACH2!0.77!12.01!BACH2;;chr19:21264991..21265026,+!p1@ZNF714!0.76!34.42!ZNF714;;chr6:28092375..28092412,+!p1@ZSCAN16!0.76!21.62!ZSCAN16;;chr3:25469724..25469773,+!p1@RARB!0.76!7.21!RARB;;chr7:149470540..149470596,-!p2@ZNF467!0.76!6.40!ZNF467;;chr6:15401104..15401166,+!p5@JARID2!0.76!4.80!JARID2;;chr2:176957417..176957431,+!p2@HOXD13!0.76!4.80!HOXD13;;chr3:114819073..114819100,-!p10@ZBTB20!0.76!4.80!ZBTB20;;chr12:115121802..115121814,-!p5@TBX3!0.76!4.80!TBX3;;chr12:56415246..56415286,+!p2@IKZF4!0.76!4.80!IKZF4;;chr14:36989940..36989957,-!p2@NKX2-1!0.76!4.80!NKX2-1;;chr1:1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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.LQhCAGE/non-small%2520cell%2520lung%2520cancer%2520cell%2520line%253aNCI-H1385.CNhs12193.10730-110B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10730-110B1
 |is_a=CL:0002553;;EFO:0002091;;FF:0000210;;FF:0102553;;FF:0103764
 |is_obsolete=
 |library_id=CNhs12193
-|library_id_phase_based=1:CNhs12193
+|library_id_phase_based=2:CNhs12193
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10730
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10730
 |name=non-small cell lung cancer cell line:NCI-H1385
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12193,LSID845,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10730-110B1;search_select_hide=table117:FF:10730-110B1
 }}

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FF:10730-110B1: Difference between revisions

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Latest revision as of 15:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0