FF:10777-110G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005120 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005120 | ||
|accession_numbers=CAGE;DRX007793;DRR008665;DRZ000090;DRZ001475;DRZ011440;DRZ012825 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057139;DRR062898;DRZ007974 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0002127,CL:0000911,CL:0000814 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102504,FF:0101035,FF:0100741,FF:0100773,FF:0100739 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10777-110G3 | |id=FF:10777-110G3 | ||
|is_a=CL:0000814;;EFO:0002091;;FF: | |is_a=CL:0000814;;EFO:0002091;;FF:0000210;;FF:0102504 | ||
|is_obsolete= | |||
|library_id=CNhs11867 | |||
|library_id_phase_based=2:CNhs11867 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10777 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10777 | |||
|name=NK T cell leukemia cell line:KHYG-1 | |name=NK T cell leukemia cell line:KHYG-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11867,LSID830,release010,COMPLETED | |profile_hcage=CNhs11867,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.091221887071275,0,-0.15147264853279,0.110190650958854,0,0,0,0,0,0,0,0,0,0,0.087841834467317,0.087841834467317,0,0.0982169068092335,0,0,0,0.467798715041903,0,0.365255128301845,0,0,0.313170678316877,0,0,0,0,0,0,0.5898150725222,0,0,0,0.326510248395875,0,-0.101978799732354,0.0461380391803668,0,0,0,0,0,0,0,0.215610963656898,0,0,0,0.193243100027323,0,-0.0265750786789271,0,0.181001967227439,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.0461380391803668,0,0,0,0,0.087841834467317,0,0,0,0,0,0,0,0,0,0,-0.573645284778267,0,0,0,0.124916099577694,-0.107693034193637,0,0,0.0439209172336585,0,0.0278541324230177,0.0798819110090393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0153108798036163,0,0,0,-0.085688401222906,-0.336533486525035,0.0461380391803668,0,0.160870697824097,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.193243100027323,0.0278541324230177,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.427948179571642,-0.0176256588627478,0,0.0461380391803668,-0.066817778951591,0.0461380391803668,0,0,0,0.0461380391803668,0,0.0461380391803668,0.0461380391803668,0,-0.128119866952565,0,0.0374292828780021,0.0804353489120485,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.0306402207099293,-0.0683442610773682,0,0,0,0,-0.0195590313732253,0,0.0723636162335821,-0.0827201683234173,-0.17547354892244,-0.519990875263412,0.0701769868795422,0,0,0.0230690195901834,-0.481550007671656,0.0561544478299734,0,0,-0.121779851751874,-0.0555796599818285,0,0,-0.230173883727538,0,0.143467932253011,-0.248868050382253,0,0.347086500053128,0,0,0,0,0,0.125889483660724,0,0,0.0461380391803668,0,0,-0.0344244472312532,-0.0489942682089252,0.0388793102220296,0,0,0,-0.16603010751091,0,0,-0.373286155956567,-0.0763888764575381,-0.0215224139080503,0.451528484878503,0,-0.109146626982591,0.0161384364019284,-0.353930041156349,0.12533968377055,-0.147401849371139,-0.189981719549847,0,0.277505535054903,-0.104046760193451,-0.0857012685692,0.115940096966188,-0.017842008560988,-1.2314085082871,0.074347309368205,0.0461380391803668,0,0,0.352299718489088,0,0.0261402947650806,0.138322156566514,0.0797885866161585,-0.647918416885527,-0.818556242034061,-0.3560161940379,-0.226666780554129,-0.0395325284566706,-0.154507039934716,0,-0.4215723249037,-0.0286074972901884,0,0,-0.0267414502559765,-0.415765236059182,1.0156963168481,0,0.0696578143201811,-0.0683442610773682,0,-0.595218362600382,0.224008335212948,0,-0.0512871056909153,0.0932106305333241,0,0,0.375069834508513,0,0,0.252922747647956,0.241820203362678,0.195486147166251,0,0.00051606861592257,-0.0211563885595817,0.211546727875953,0,-0.132377820950661,-0.0998718582770274,0,-0.0146394761261923,0,0.189435868379201,-0.445121951790452,-0.164990696339003,-0.261524107567641,-0.0584468268118252,0.26317263646681,-0.103474640632585,0.269751472720185,0.0926173053421825,-0.124307696593413,-0.0881268324752877,-0.17634612780213,-0.88354475051838,0.80128786608485,0.0626022318434236,-0.583529904229572,0,-0.562118146144642,0,0.0303407112271192,0.0098383909660823,0.0986010578298101,0.0993070960917168,1.25560409448577,0.373791266188514,0,0.301596570960604,-0.788130937773974,0,-0.135723143846782,0,0,-0.150367083334639,-0.697695966512583,-0.188581408274406,-0.0132194981003641,0,-0.790080158389657,0,0,-0.155011820293596,0.154948008774269,0,-0.126716842861544,-0.163075646117657,-0.0644033753469464,-0.115971073434934,0.0461380391803668,0,-0.645700337992725,0,0.0461380391803668,-0.518086229350713,-0.0437786097639492,-0.573645284778267,0.0955500476657963,0,-0.108622809454255,0,0,-0.016657068141079,0.125889483660724,-0.22213482002751,0,0,-0.0018631192443915,-0.116628112990133,0,0,0,0,0,0.0288853234819609,0,0,0,0,0,0.300484488863153,0.124818639323018,0,-0.0604799027527885,0,0,0,0,0,0.0150864025304489,0,0,-0.584114812514332,-0.136362182016167,0.0702256843509025,0,0.0461380391803668,0.0230690195901834,0,0.376921134974966,0.206560001624154,0.160870697824097,0.029007991326465,0,0.111684473726077,0,0,-0.0861409897892114,0,0,0,0.0230690195901834,0.030111377413653,-0.152635042559573,0,0,0,0.0719219875507616,0,0,0,0,-0.0610390927010054,0,0,-0.106394563826926,0,-0.146355743821553,-0.0354438403664747,0,0.657316977902841,-0.0239091175662471,-0.588697724732503,0,0,-0.261347131789888,0,0,0.177723877787749,0,0.087841834467317,-0.0209247759461169,0,0,0,0,0.0461380391803668,0.087841834467317,0.0886149005621232,0,0,0,0,0,0,0,0,0,0,0,-0.17529631122986,-0.00438222219119337,0,0,0,0,0,0,0,-0.00103700348871972,0.165200728672358,0,0,0,0,0,0.0461380391803668,0,0,0.355706885113296,0,0,0.0461380391803668,0,0,0.181001967227439,0,0.193243100027323,0,0,0.174243262737341,0,0,-0.15147264853279,0,0.0132936785780476,0,0,0,0,0.0072075493653023,0.0604245295116052,0,0,0,0,0,0.0025703976252764,-0.559127902059734,0,0.087841834467317,0.0461380391803668,0,0,0,0,0.0516769501897842,0,0.0461380391803668,0,0,-0.0260425392416602,0,0,0,-0.104796384789156,0,0.091221887071275,0,0.087841834467317,0,0,0,0.0461380391803668,0.22306363404787,0.0230690195901834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0417966253055591,-0.0128552973665199,-0.0813884499164805,0,0,0,-0.232628352633041,0,0,0,0,0,0,0.0490949248835213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0461380391803668,0,0.0461380391803668,0,0.0446342751571062,0,0,0,0,0,0,0,0.04557730510696,0,0,0,0,0,0,0,0.365255128301845,0,0,-0.0920328098005262,0,0.0388467060933202,0.0233547436613923,0.0461380391803668,0,0,-0.176292366930632,-0.260151380232964,-0.04557081648717,0,0,0.0461380391803668,-0.054385572482455,0.193243100027323,0,-0.0287106016824028,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982169068092335,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0230690195901834,0,0,0,0,0,0,0,0,0,0,0,0.087841834467317,0,0.0461380391803668,0.0860137614205454,0,0,0,0,0,0,0.0776731104506605,0.193243100027323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.179630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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=110G3 | |rna_tube_id=110G3 | ||
|rna_weight_ug=36.16623 | |rna_weight_ug=36.16623 | ||
|rnaseq_library_id=RDhi10082 | |||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0156 | |sample_cell_catalog=jcrb0156 | ||
|sample_cell_line=KHYG-1 | |sample_cell_line=KHYG-1 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.91991892930756e-236!GO:0043227;membrane-bound organelle;6.04852368760119e-201!GO:0043231;intracellular membrane-bound organelle;1.52026967995114e-200!GO:0043226;organelle;4.53025879170391e-190!GO:0043229;intracellular organelle;1.57130957465154e-189!GO:0005737;cytoplasm;4.55385974702121e-160!GO:0044422;organelle part;1.39929314091186e-158!GO:0044446;intracellular organelle part;7.22992326942236e-157!GO:0032991;macromolecular complex;2.99124992535928e-124!GO:0044444;cytoplasmic part;3.41802776522245e-112!GO:0044237;cellular metabolic process;7.60299894838367e-98!GO:0005634;nucleus;4.90721928843799e-95!GO:0044238;primary metabolic process;1.43305176897495e-93!GO:0044428;nuclear part;2.23262646724393e-92!GO:0030529;ribonucleoprotein complex;2.63475052372248e-90!GO:0043170;macromolecule metabolic process;2.03199353248022e-89!GO:0043233;organelle lumen;4.94331093019009e-79!GO:0031974;membrane-enclosed lumen;4.94331093019009e-79!GO:0003723;RNA binding;1.26823541394564e-78!GO:0005515;protein binding;4.30488891488437e-68!GO:0043234;protein complex;3.30123278128648e-67!GO:0005739;mitochondrion;8.99639261099334e-67!GO:0006412;translation;1.31819300256148e-57!GO:0006396;RNA processing;1.91050376440369e-57!GO:0019538;protein metabolic process;3.54953746479232e-54!GO:0031981;nuclear lumen;3.76925982609505e-52!GO:0043283;biopolymer metabolic process;1.15150928659187e-51!GO:0006259;DNA metabolic process;1.26388492403392e-50!GO:0044267;cellular protein metabolic process;2.09696477707838e-50!GO:0044260;cellular macromolecule metabolic process;9.83846311829858e-50!GO:0005840;ribosome;1.16844889154802e-49!GO:0016071;mRNA metabolic process;3.28527574935887e-47!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.43300792083557e-46!GO:0031090;organelle membrane;1.50844912570871e-46!GO:0044429;mitochondrial part;2.08024834682657e-45!GO:0044249;cellular biosynthetic process;4.76055574446165e-44!GO:0009058;biosynthetic process;9.55456208961485e-44!GO:0009059;macromolecule biosynthetic process;1.07701145731654e-43!GO:0031967;organelle envelope;1.32223729849068e-43!GO:0003735;structural constituent of ribosome;1.58529307665212e-43!GO:0031975;envelope;2.96035673325485e-43!GO:0016043;cellular component organization and biogenesis;8.51108228126801e-42!GO:0015031;protein transport;3.98835486897467e-41!GO:0033036;macromolecule localization;5.00983576896646e-41!GO:0007049;cell cycle;9.26398230825383e-41!GO:0010467;gene expression;1.32712231455798e-40!GO:0006397;mRNA processing;2.25907700580145e-40!GO:0008380;RNA splicing;1.57538564403131e-39!GO:0045184;establishment of protein localization;1.49893923354193e-38!GO:0033279;ribosomal subunit;3.52938368320229e-38!GO:0008104;protein localization;2.19406263854937e-37!GO:0006996;organelle organization and biogenesis;2.62661829461483e-36!GO:0046907;intracellular transport;3.04454082457983e-36!GO:0005829;cytosol;1.27962296635908e-35!GO:0065003;macromolecular complex assembly;4.45697636452399e-35!GO:0043228;non-membrane-bound organelle;6.90849250898223e-35!GO:0043232;intracellular non-membrane-bound organelle;6.90849250898223e-35!GO:0022402;cell cycle process;1.43367421146271e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.06960027100372e-33!GO:0005654;nucleoplasm;1.44467206510692e-33!GO:0000166;nucleotide binding;1.13817787340031e-31!GO:0006886;intracellular protein transport;2.02912991100839e-31!GO:0006974;response to DNA damage stimulus;4.73736108520755e-31!GO:0005681;spliceosome;1.40230548202145e-30!GO:0022607;cellular component assembly;1.44557563961335e-30!GO:0005694;chromosome;2.54468982006365e-30!GO:0000278;mitotic cell cycle;3.31318437796471e-29!GO:0005740;mitochondrial envelope;4.74375283310764e-28!GO:0019866;organelle inner membrane;4.98148313893819e-28!GO:0044427;chromosomal part;9.72585911136048e-28!GO:0031966;mitochondrial membrane;3.56877632062106e-27!GO:0003676;nucleic acid binding;5.60347810773396e-27!GO:0051649;establishment of cellular localization;9.07151205650824e-27!GO:0051641;cellular localization;2.53171848155613e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.63862229913455e-26!GO:0006281;DNA repair;2.77168670287716e-26!GO:0044451;nucleoplasm part;9.51781499010634e-26!GO:0022403;cell cycle phase;1.05427676859469e-25!GO:0005743;mitochondrial inner membrane;4.67602588233784e-25!GO:0044445;cytosolic part;3.48696523550668e-24!GO:0032553;ribonucleotide binding;4.72756709531187e-24!GO:0032555;purine ribonucleotide binding;4.72756709531187e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.24295494478567e-24!GO:0016462;pyrophosphatase activity;7.48642076762962e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;8.94190821419832e-24!GO:0017111;nucleoside-triphosphatase activity;1.08935773779318e-23!GO:0017076;purine nucleotide binding;1.38044282380744e-23!GO:0000087;M phase of mitotic cell cycle;1.59328746575465e-23!GO:0007067;mitosis;3.76708180538528e-23!GO:0051276;chromosome organization and biogenesis;4.26431758170532e-23!GO:0006119;oxidative phosphorylation;4.45080059118609e-23!GO:0005524;ATP binding;1.66806554065883e-22!GO:0016874;ligase activity;3.56020226469253e-22!GO:0006512;ubiquitin cycle;3.90821434861738e-22!GO:0032559;adenyl ribonucleotide binding;4.9821977315499e-22!GO:0030554;adenyl nucleotide binding;2.70082686730925e-21!GO:0031980;mitochondrial lumen;2.98640072278344e-21!GO:0005759;mitochondrial matrix;2.98640072278344e-21!GO:0000279;M phase;4.93402728320555e-21!GO:0044455;mitochondrial membrane part;6.25794992120091e-21!GO:0051301;cell division;8.00916318039405e-21!GO:0005730;nucleolus;1.87218655610696e-20!GO:0009719;response to endogenous stimulus;2.26229594384303e-20!GO:0044265;cellular macromolecule catabolic process;3.02924949035523e-20!GO:0015934;large ribosomal subunit;3.2454105786604e-20!GO:0012501;programmed cell death;4.26973886923999e-20!GO:0006260;DNA replication;6.25269462560583e-20!GO:0006915;apoptosis;6.47382067527017e-20!GO:0012505;endomembrane system;3.06434622421895e-19!GO:0008219;cell death;3.53196380485072e-19!GO:0016265;death;3.53196380485072e-19!GO:0015935;small ribosomal subunit;4.35777983185884e-19!GO:0042623;ATPase activity, coupled;4.36508083835574e-19!GO:0016887;ATPase activity;6.47168049573692e-19!GO:0022618;protein-RNA complex assembly;8.56879095870277e-19!GO:0016070;RNA metabolic process;1.78680720511081e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;2.01992967978607e-17!GO:0006457;protein folding;2.45414090247549e-17!GO:0048770;pigment granule;3.2866346773415e-17!GO:0042470;melanosome;3.2866346773415e-17!GO:0044248;cellular catabolic process;4.3124160441121e-17!GO:0000502;proteasome complex (sensu Eukaryota);6.34769180715723e-17!GO:0043412;biopolymer modification;7.35260679859025e-17!GO:0051726;regulation of cell cycle;7.42928214529229e-17!GO:0006323;DNA packaging;9.1089053273742e-17!GO:0005746;mitochondrial respiratory chain;9.1089053273742e-17!GO:0043285;biopolymer catabolic process;9.1614869512689e-17!GO:0000074;regulation of progression through cell cycle;1.06986752022103e-16!GO:0009057;macromolecule catabolic process;1.49901544420604e-16!GO:0008134;transcription factor binding;1.66481204868867e-16!GO:0005635;nuclear envelope;2.66583467738082e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.34393882717691e-16!GO:0019941;modification-dependent protein catabolic process;3.89414497452419e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.89414497452419e-16!GO:0006511;ubiquitin-dependent protein catabolic process;5.39249520814815e-16!GO:0008135;translation factor activity, nucleic acid binding;6.42160661178019e-16!GO:0042254;ribosome biogenesis and assembly;8.52503573811641e-16!GO:0044257;cellular protein catabolic process;8.52503573811641e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.93180641104422e-15!GO:0006605;protein targeting;2.11810626070695e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.80983227693193e-15!GO:0003954;NADH dehydrogenase activity;5.80983227693193e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.80983227693193e-15!GO:0006913;nucleocytoplasmic transport;6.28283086534254e-15!GO:0044453;nuclear membrane part;6.57897514170432e-15!GO:0031965;nuclear membrane;7.04051374784945e-15!GO:0005761;mitochondrial ribosome;7.69563219360443e-15!GO:0000313;organellar ribosome;7.69563219360443e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.06728818665534e-14!GO:0000375;RNA splicing, via transesterification reactions;1.06728818665534e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.06728818665534e-14!GO:0051169;nuclear transport;1.25319833584796e-14!GO:0006464;protein modification process;1.54426952051248e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.49951476842022e-14!GO:0000785;chromatin;4.96823789245289e-14!GO:0044432;endoplasmic reticulum part;7.045092042818e-14!GO:0043687;post-translational protein modification;1.18008618349618e-13!GO:0016604;nuclear body;1.46420225993488e-13!GO:0042981;regulation of apoptosis;2.25206772087555e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.44917381083956e-13!GO:0042773;ATP synthesis coupled electron transport;2.44917381083956e-13!GO:0003743;translation initiation factor activity;2.56079581315429e-13!GO:0051186;cofactor metabolic process;2.8819416569943e-13!GO:0043067;regulation of programmed cell death;3.03532596867201e-13!GO:0006333;chromatin assembly or disassembly;3.15056462820243e-13!GO:0065004;protein-DNA complex assembly;3.81844860545302e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.47186161809013e-13!GO:0045271;respiratory chain complex I;6.47186161809013e-13!GO:0005747;mitochondrial respiratory chain complex I;6.47186161809013e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.75073885422254e-13!GO:0051082;unfolded protein binding;9.87264427646614e-13!GO:0006399;tRNA metabolic process;1.05769254598977e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.96864591181389e-12!GO:0030163;protein catabolic process;2.44835865561681e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.65564187353237e-12!GO:0005783;endoplasmic reticulum;3.4052664024945e-12!GO:0004386;helicase activity;6.61523855216947e-12!GO:0005643;nuclear pore;7.7563724952485e-12!GO:0016787;hydrolase activity;8.21385849151607e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.51956852519462e-12!GO:0043566;structure-specific DNA binding;1.02047937474898e-11!GO:0017038;protein import;1.51116752823111e-11!GO:0000775;chromosome, pericentric region;1.87290300634672e-11!GO:0005789;endoplasmic reticulum membrane;2.11234489526295e-11!GO:0016568;chromatin modification;2.18601159969795e-11!GO:0048193;Golgi vesicle transport;2.62513596324052e-11!GO:0006163;purine nucleotide metabolic process;3.95798855463105e-11!GO:0006413;translational initiation;4.26270403699541e-11!GO:0009259;ribonucleotide metabolic process;5.29773094153024e-11!GO:0003697;single-stranded DNA binding;5.46625874041067e-11!GO:0050657;nucleic acid transport;6.04021373747601e-11!GO:0051236;establishment of RNA localization;6.04021373747601e-11!GO:0050658;RNA transport;6.04021373747601e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.55321023187299e-11!GO:0006403;RNA localization;8.37253531261174e-11!GO:0006164;purine nucleotide biosynthetic process;9.86905299768565e-11!GO:0006364;rRNA processing;1.20525690225509e-10!GO:0006732;coenzyme metabolic process;1.26519031272627e-10!GO:0008026;ATP-dependent helicase activity;1.46470341948908e-10!GO:0016072;rRNA metabolic process;1.49900993568138e-10!GO:0046930;pore complex;2.16428033633556e-10!GO:0065002;intracellular protein transport across a membrane;2.67137339703134e-10!GO:0009150;purine ribonucleotide metabolic process;2.83959207833922e-10!GO:0003712;transcription cofactor activity;3.13985491326571e-10!GO:0009260;ribonucleotide biosynthetic process;3.14252983921166e-10!GO:0016779;nucleotidyltransferase activity;3.26771813636591e-10!GO:0006261;DNA-dependent DNA replication;5.16942170478291e-10!GO:0006446;regulation of translational initiation;6.45386712194713e-10!GO:0005819;spindle;6.75372349704573e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.17262030902377e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.59138835643443e-10!GO:0019829;cation-transporting ATPase activity;8.96858613932709e-10!GO:0009056;catabolic process;9.03430864193763e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.08040802780313e-09!GO:0016607;nuclear speck;1.33155269127754e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.69606153502332e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.69606153502332e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.69606153502332e-09!GO:0051246;regulation of protein metabolic process;1.83396972768639e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.89020583378549e-09!GO:0008639;small protein conjugating enzyme activity;1.96094253763835e-09!GO:0031497;chromatin assembly;2.13573567936519e-09!GO:0006334;nucleosome assembly;2.74718494389043e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.0706332723576e-09!GO:0019787;small conjugating protein ligase activity;3.68306824112793e-09!GO:0006793;phosphorus metabolic process;4.29368602816084e-09!GO:0006796;phosphate metabolic process;4.29368602816084e-09!GO:0051028;mRNA transport;4.30448207291141e-09!GO:0004842;ubiquitin-protein ligase activity;5.00191560908561e-09!GO:0015986;ATP synthesis coupled proton transport;5.12811705504442e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.12811705504442e-09!GO:0043038;amino acid activation;5.26263115587142e-09!GO:0006418;tRNA aminoacylation for protein translation;5.26263115587142e-09!GO:0043039;tRNA aminoacylation;5.26263115587142e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.56064034114499e-09!GO:0015078;hydrogen ion transmembrane transporter activity;7.45483016442736e-09!GO:0016192;vesicle-mediated transport;9.85670704218789e-09!GO:0006461;protein complex assembly;1.26082289738774e-08!GO:0008565;protein transporter activity;1.36021034971673e-08!GO:0009055;electron carrier activity;1.52635666706099e-08!GO:0016740;transferase activity;1.55322261810585e-08!GO:0015630;microtubule cytoskeleton;1.84659020048474e-08!GO:0005794;Golgi apparatus;2.34599891228164e-08!GO:0051170;nuclear import;2.43961338458655e-08!GO:0051325;interphase;2.70874179862051e-08!GO:0006754;ATP biosynthetic process;3.1963950446666e-08!GO:0006753;nucleoside phosphate metabolic process;3.1963950446666e-08!GO:0000075;cell cycle checkpoint;3.28658237130323e-08!GO:0006606;protein import into nucleus;4.14738372339516e-08!GO:0046034;ATP metabolic process;4.65057051236733e-08!GO:0009060;aerobic respiration;5.26567314442428e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.7079449947474e-08!GO:0016310;phosphorylation;6.52617252854214e-08!GO:0009141;nucleoside triphosphate metabolic process;6.57086395018144e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.6136807087046e-08!GO:0051188;cofactor biosynthetic process;6.66358498118798e-08!GO:0016881;acid-amino acid ligase activity;7.91498650109537e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.00368962015262e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.00368962015262e-08!GO:0006310;DNA recombination;8.62010767766835e-08!GO:0005839;proteasome core complex (sensu Eukaryota);8.99005510959521e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.77506060201318e-08!GO:0051329;interphase of mitotic cell cycle;1.1852587976349e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.20974304910358e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.20974304910358e-07!GO:0008094;DNA-dependent ATPase activity;1.24027485960834e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.51364640388184e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.51364640388184e-07!GO:0005768;endosome;1.75098009943008e-07!GO:0006752;group transfer coenzyme metabolic process;1.97490041429627e-07!GO:0005657;replication fork;2.14252142395176e-07!GO:0000245;spliceosome assembly;2.81984946495714e-07!GO:0045786;negative regulation of progression through cell cycle;2.99360661091547e-07!GO:0045333;cellular respiration;3.2536343769871e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.27088393652405e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.69248974217503e-07!GO:0003899;DNA-directed RNA polymerase activity;3.86420128281611e-07!GO:0032446;protein modification by small protein conjugation;4.42952486191896e-07!GO:0007051;spindle organization and biogenesis;4.43193102772449e-07!GO:0005813;centrosome;4.56792731899315e-07!GO:0043069;negative regulation of programmed cell death;4.86531136636359e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.98206673816794e-07!GO:0015399;primary active transmembrane transporter activity;4.98206673816794e-07!GO:0004298;threonine endopeptidase activity;5.02471549192106e-07!GO:0005815;microtubule organizing center;5.32051037832435e-07!GO:0006366;transcription from RNA polymerase II promoter;6.25938240451381e-07!GO:0007005;mitochondrion organization and biogenesis;6.50802905698772e-07!GO:0043066;negative regulation of apoptosis;7.28049552830011e-07!GO:0009117;nucleotide metabolic process;7.52073161761858e-07!GO:0006916;anti-apoptosis;7.6525699707076e-07!GO:0016567;protein ubiquitination;7.89109587346407e-07!GO:0005793;ER-Golgi intermediate compartment;8.0643300567611e-07!GO:0045259;proton-transporting ATP synthase complex;9.18912253392831e-07!GO:0065009;regulation of a molecular function;9.35532057563505e-07!GO:0006099;tricarboxylic acid cycle;9.44893065819446e-07!GO:0046356;acetyl-CoA catabolic process;9.44893065819446e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.04272896908996e-06!GO:0048523;negative regulation of cellular process;1.13504871272562e-06!GO:0043623;cellular protein complex assembly;1.57136922869473e-06!GO:0006302;double-strand break repair;1.75162538964648e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.00138967103058e-06!GO:0003690;double-stranded DNA binding;2.09281645980114e-06!GO:0006084;acetyl-CoA metabolic process;2.22673294065807e-06!GO:0008632;apoptotic program;2.34026537810761e-06!GO:0009108;coenzyme biosynthetic process;2.56705199679162e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.8861023736061e-06!GO:0019899;enzyme binding;3.66704679307797e-06!GO:0043492;ATPase activity, coupled to movement of substances;3.93969745274325e-06!GO:0005667;transcription factor complex;4.27707785088712e-06!GO:0048475;coated membrane;4.38864853710901e-06!GO:0030117;membrane coat;4.38864853710901e-06!GO:0043065;positive regulation of apoptosis;4.53069041780093e-06!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;6.03514356176228e-06!GO:0007059;chromosome segregation;6.18751713880887e-06!GO:0043068;positive regulation of programmed cell death;6.2933753681969e-06!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;7.78566277712316e-06!GO:0048519;negative regulation of biological process;8.15662838436497e-06!GO:0009109;coenzyme catabolic process;8.27581218887424e-06!GO:0005762;mitochondrial large ribosomal subunit;9.69028455161404e-06!GO:0000315;organellar large ribosomal subunit;9.69028455161404e-06!GO:0051168;nuclear export;1.01281540428986e-05!GO:0051187;cofactor catabolic process;1.01281540428986e-05!GO:0030120;vesicle coat;1.13399952546815e-05!GO:0030662;coated vesicle membrane;1.13399952546815e-05!GO:0000786;nucleosome;1.19029572665563e-05!GO:0000776;kinetochore;1.38831372707071e-05!GO:0003724;RNA helicase activity;1.39351136316063e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.60157528117593e-05!GO:0006917;induction of apoptosis;1.60468374307503e-05!GO:0000151;ubiquitin ligase complex;2.19977042254605e-05!GO:0007088;regulation of mitosis;2.26123922366224e-05!GO:0006613;cotranslational protein targeting to membrane;2.27532081316359e-05!GO:0012502;induction of programmed cell death;2.38457717208228e-05!GO:0006401;RNA catabolic process;2.75730617564944e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.00131620843251e-05!GO:0003713;transcription coactivator activity;3.060198004739e-05!GO:0008168;methyltransferase activity;3.63514328310641e-05!GO:0016563;transcription activator activity;3.66546415360969e-05!GO:0008033;tRNA processing;3.97700544627137e-05!GO:0005770;late endosome;4.47222927051301e-05!GO:0044440;endosomal part;4.52884690745755e-05!GO:0010008;endosome membrane;4.52884690745755e-05!GO:0006417;regulation of translation;4.80296298468309e-05!GO:0016564;transcription repressor activity;4.91431924918202e-05!GO:0006818;hydrogen transport;5.05117102521005e-05!GO:0003729;mRNA binding;5.29662975380645e-05!GO:0015992;proton transport;5.84057052041194e-05!GO:0000314;organellar small ribosomal subunit;6.7496210626351e-05!GO:0005763;mitochondrial small ribosomal subunit;6.7496210626351e-05!GO:0003682;chromatin binding;7.20666500932544e-05!GO:0004518;nuclease activity;7.21407329126818e-05!GO:0006352;transcription initiation;7.37107537366052e-05!GO:0031324;negative regulation of cellular metabolic process;9.03804458839765e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.0431344230514e-05!GO:0000082;G1/S transition of mitotic cell cycle;9.0431344230514e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;9.98697543082148e-05!GO:0007243;protein kinase cascade;0.000109828176080098!GO:0006402;mRNA catabolic process;0.00011542680310009!GO:0003684;damaged DNA binding;0.000117909553007415!GO:0006270;DNA replication initiation;0.000141274186746507!GO:0006612;protein targeting to membrane;0.00014220127725154!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000154255092463288!GO:0003678;DNA helicase activity;0.00015525151414034!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000159279705983987!GO:0008654;phospholipid biosynthetic process;0.000161125732272769!GO:0005773;vacuole;0.000161688818808143!GO:0043021;ribonucleoprotein binding;0.000172672165665585!GO:0050794;regulation of cellular process;0.000179630583581839!GO:0051052;regulation of DNA metabolic process;0.000188880961915456!GO:0007093;mitotic cell cycle checkpoint;0.00021228224298993!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000228480630446153!GO:0031326;regulation of cellular biosynthetic process;0.000270132024876243!GO:0009165;nucleotide biosynthetic process;0.000285334959894445!GO:0016363;nuclear matrix;0.000292997971151979!GO:0050790;regulation of catalytic activity;0.000293837089225476!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000294298219235427!GO:0008186;RNA-dependent ATPase activity;0.000298143478926282!GO:0003924;GTPase activity;0.000305250583120905!GO:0005885;Arp2/3 protein complex;0.000308337468145138!GO:0005637;nuclear inner membrane;0.000327287648127506!GO:0016853;isomerase activity;0.000336718602905691!GO:0006082;organic acid metabolic process;0.000345831276067062!GO:0003714;transcription corepressor activity;0.000346016050533124!GO:0019752;carboxylic acid metabolic process;0.000346772992983679!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000387614786244183!GO:0030384;phosphoinositide metabolic process;0.000387632701333417!GO:0006950;response to stress;0.000413609795492467!GO:0006383;transcription from RNA polymerase III promoter;0.000416258932616828!GO:0016251;general RNA polymerase II transcription factor activity;0.000420239772404929!GO:0043681;protein import into mitochondrion;0.000429497847489713!GO:0005525;GTP binding;0.000441579476285395!GO:0004527;exonuclease activity;0.000458220674705187!GO:0031072;heat shock protein binding;0.000477793507297657!GO:0000323;lytic vacuole;0.000481128239392961!GO:0005764;lysosome;0.000481128239392961!GO:0045454;cell redox homeostasis;0.000495900555587484!GO:0007052;mitotic spindle organization and biogenesis;0.000499256060524381!GO:0005876;spindle microtubule;0.00056956088242957!GO:0051427;hormone receptor binding;0.000575789338513096!GO:0006520;amino acid metabolic process;0.000586468316762382!GO:0000049;tRNA binding;0.000603627663081979!GO:0030880;RNA polymerase complex;0.00061327950601472!GO:0015631;tubulin binding;0.000615161282363403!GO:0046483;heterocycle metabolic process;0.000643186951762591!GO:0009892;negative regulation of metabolic process;0.000682252341682025!GO:0005048;signal sequence binding;0.000682542384259041!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000685621372611029!GO:0031982;vesicle;0.000705936413285807!GO:0005684;U2-dependent spliceosome;0.000715272197190004!GO:0009889;regulation of biosynthetic process;0.000735698655506678!GO:0051252;regulation of RNA metabolic process;0.000764041868690879!GO:0004004;ATP-dependent RNA helicase activity;0.00085275973099131!GO:0000228;nuclear chromosome;0.000861063440733338!GO:0006414;translational elongation;0.000867941610960246!GO:0006650;glycerophospholipid metabolic process;0.000980525241142687!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00102932582469981!GO:0004674;protein serine/threonine kinase activity;0.00105714916046641!GO:0043596;nuclear replication fork;0.00106431186736614!GO:0044431;Golgi apparatus part;0.00106835890966718!GO:0016859;cis-trans isomerase activity;0.00109068742730708!GO:0006091;generation of precursor metabolites and energy;0.00113524176297077!GO:0035257;nuclear hormone receptor binding;0.00114905813600588!GO:0022890;inorganic cation transmembrane transporter activity;0.00126263313050665!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00129370984020512!GO:0000428;DNA-directed RNA polymerase complex;0.00129370984020512!GO:0007006;mitochondrial membrane organization and biogenesis;0.00132754919553408!GO:0005769;early endosome;0.00139110233430153!GO:0046474;glycerophospholipid biosynthetic process;0.00140484983537246!GO:0032259;methylation;0.00147238149838875!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00148042369032787!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00148042369032787!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00148042369032787!GO:0008234;cysteine-type peptidase activity;0.00149319002392903!GO:0046489;phosphoinositide biosynthetic process;0.0015141547478428!GO:0006405;RNA export from nucleus;0.00153752020687493!GO:0043414;biopolymer methylation;0.00153752020687493!GO:0005798;Golgi-associated vesicle;0.00155551605027778!GO:0006891;intra-Golgi vesicle-mediated transport;0.00157691785836655!GO:0031988;membrane-bound vesicle;0.0015937138402556!GO:0044452;nucleolar part;0.00161416053358317!GO:0051540;metal cluster binding;0.00165298582176197!GO:0051536;iron-sulfur cluster binding;0.00165298582176197!GO:0032200;telomere organization and biogenesis;0.00166986356067586!GO:0000723;telomere maintenance;0.00166986356067586!GO:0016197;endosome transport;0.00169717755440634!GO:0032508;DNA duplex unwinding;0.0016979099085745!GO:0032392;DNA geometric change;0.0016979099085745!GO:0006289;nucleotide-excision repair;0.00177295865856464!GO:0005788;endoplasmic reticulum lumen;0.00179157237007616!GO:0007050;cell cycle arrest;0.00180718052535746!GO:0031410;cytoplasmic vesicle;0.00184237176934887!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00187631926945731!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00187631926945731!GO:0022415;viral reproductive process;0.00191824678823033!GO:0047485;protein N-terminus binding;0.00199363581777629!GO:0019222;regulation of metabolic process;0.00209433743102918!GO:0000287;magnesium ion binding;0.00221111805786215!GO:0005669;transcription factor TFIID complex;0.00223243866459619!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0025844334121897!GO:0051539;4 iron, 4 sulfur cluster binding;0.00266127039757828!GO:0009112;nucleobase metabolic process;0.00268000309411714!GO:0006284;base-excision repair;0.00268497796417922!GO:0016491;oxidoreductase activity;0.00275354041095264!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00279711688670314!GO:0006839;mitochondrial transport;0.00281791145089148!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00291121540826811!GO:0044450;microtubule organizing center part;0.00293415105169041!GO:0030658;transport vesicle membrane;0.00301589393572832!GO:0009124;nucleoside monophosphate biosynthetic process;0.00303947405738613!GO:0009123;nucleoside monophosphate metabolic process;0.00303947405738613!GO:0007242;intracellular signaling cascade;0.00309064677579096!GO:0000070;mitotic sister chromatid segregation;0.00318631611551434!GO:0000059;protein import into nucleus, docking;0.0032144838342167!GO:0000819;sister chromatid segregation;0.00322545306179245!GO:0006268;DNA unwinding during replication;0.00325883068002462!GO:0048487;beta-tubulin binding;0.00333797590369099!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00337321771698156!GO:0007017;microtubule-based process;0.00341950423380422!GO:0003725;double-stranded RNA binding;0.00343104755864615!GO:0016023;cytoplasmic membrane-bound vesicle;0.00351498683135846!GO:0000139;Golgi membrane;0.00351562580804905!GO:0032561;guanyl ribonucleotide binding;0.00354598269973367!GO:0019001;guanyl nucleotide binding;0.00354598269973367!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00354598269973367!GO:0043284;biopolymer biosynthetic process;0.0036355748822361!GO:0031968;organelle outer membrane;0.00364550770118292!GO:0005874;microtubule;0.00367835839691629!GO:0043488;regulation of mRNA stability;0.00367835839691629!GO:0043487;regulation of RNA stability;0.00367835839691629!GO:0043601;nuclear replisome;0.0038723191538515!GO:0030894;replisome;0.0038723191538515!GO:0046983;protein dimerization activity;0.00389842452105045!GO:0019867;outer membrane;0.00390874730620517!GO:0004722;protein serine/threonine phosphatase activity;0.00394389439057268!GO:0051087;chaperone binding;0.00402099435404634!GO:0031902;late endosome membrane;0.00406293873704748!GO:0008180;signalosome;0.00431420601186439!GO:0015980;energy derivation by oxidation of organic compounds;0.00441896578999606!GO:0042802;identical protein binding;0.00450015013469636!GO:0000725;recombinational repair;0.00469190289014275!GO:0000724;double-strand break repair via homologous recombination;0.00469190289014275!GO:0042393;histone binding;0.00475891069599908!GO:0031124;mRNA 3'-end processing;0.00475891069599908!GO:0030118;clathrin coat;0.00496200549825299!GO:0051338;regulation of transferase activity;0.00497370069556488!GO:0006611;protein export from nucleus;0.00500213416034885!GO:0006338;chromatin remodeling;0.00505535335794663!GO:0000922;spindle pole;0.00506316155560023!GO:0005774;vacuolar membrane;0.00511331530025639!GO:0048500;signal recognition particle;0.00516525495314661!GO:0004003;ATP-dependent DNA helicase activity;0.00522797007237768!GO:0009161;ribonucleoside monophosphate metabolic process;0.00528186951689494!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00528186951689494!GO:0006519;amino acid and derivative metabolic process;0.00536362911654239!GO:0008022;protein C-terminus binding;0.00543672437254346!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00550700574619166!GO:0015002;heme-copper terminal oxidase activity;0.00550700574619166!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00550700574619166!GO:0004129;cytochrome-c oxidase activity;0.00550700574619166!GO:0043549;regulation of kinase activity;0.00556627362987131!GO:0044262;cellular carbohydrate metabolic process;0.00556627362987131!GO:0051789;response to protein stimulus;0.00556627362987131!GO:0006986;response to unfolded protein;0.00556627362987131!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00578286073212512!GO:0008139;nuclear localization sequence binding;0.0057966596193289!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.00582721942461771!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.00582721942461771!GO:0009126;purine nucleoside monophosphate metabolic process;0.00582721942461771!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.00582721942461771!GO:0022411;cellular component disassembly;0.00585764673391708!GO:0003711;transcription elongation regulator activity;0.00590345649039438!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00591209816006331!GO:0042770;DNA damage response, signal transduction;0.00591210734582882!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00606160731962251!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0063476728924998!GO:0006595;polyamine metabolic process;0.0063476728924998!GO:0009615;response to virus;0.00643343337244688!GO:0008287;protein serine/threonine phosphatase complex;0.00676760680127327!GO:0000910;cytokinesis;0.00678373595749469!GO:0030660;Golgi-associated vesicle membrane;0.00684384935365897!GO:0006607;NLS-bearing substrate import into nucleus;0.0069342911795344!GO:0051098;regulation of binding;0.0069342911795344!GO:0030176;integral to endoplasmic reticulum membrane;0.00695526713189977!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00698821604609171!GO:0048522;positive regulation of cellular process;0.00701763588869194!GO:0016272;prefoldin complex;0.00702240242290631!GO:0031570;DNA integrity checkpoint;0.00716280869664445!GO:0000781;chromosome, telomeric region;0.00719176502098762!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00719176502098762!GO:0006007;glucose catabolic process;0.0072193465792328!GO:0008637;apoptotic mitochondrial changes;0.00725890286752162!GO:0006730;one-carbon compound metabolic process;0.00736789528455819!GO:0008312;7S RNA binding;0.00741864868147979!GO:0048468;cell development;0.00754112325582559!GO:0031577;spindle checkpoint;0.00755291339998093!GO:0004532;exoribonuclease activity;0.00779921812026552!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00779921812026552!GO:0051053;negative regulation of DNA metabolic process;0.00780942229703127!GO:0006807;nitrogen compound metabolic process;0.00780942229703127!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00782002887748474!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00812898535678554!GO:0030867;rough endoplasmic reticulum membrane;0.00842679710028846!GO:0051881;regulation of mitochondrial membrane potential;0.0085199602882598!GO:0043022;ribosome binding;0.0085199602882598!GO:0043189;H4/H2A histone acetyltransferase complex;0.00854648398633314!GO:0051090;regulation of transcription factor activity;0.00864554468747984!GO:0005765;lysosomal membrane;0.00864554468747984!GO:0043281;regulation of caspase activity;0.00869724504606702!GO:0000726;non-recombinational repair;0.00881913674166961!GO:0008276;protein methyltransferase activity;0.00881913674166961!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00887919412772753!GO:0044438;microbody part;0.00889479281976694!GO:0044439;peroxisomal part;0.00889479281976694!GO:0016584;nucleosome positioning;0.00909506135737737!GO:0006740;NADPH regeneration;0.00909506135737737!GO:0006098;pentose-phosphate shunt;0.00909506135737737!GO:0005741;mitochondrial outer membrane;0.00916844270415795!GO:0033116;ER-Golgi intermediate compartment membrane;0.00937224670443704!GO:0016605;PML body;0.0094030632444097!GO:0003887;DNA-directed DNA polymerase activity;0.00965627435861086!GO:0006506;GPI anchor biosynthetic process;0.00971019278710422!GO:0044437;vacuolar part;0.00972511399217821!GO:0006144;purine base metabolic process;0.00973531298521679!GO:0008408;3'-5' exonuclease activity;0.0099972659681665!GO:0006275;regulation of DNA replication;0.0101495159404696!GO:0019318;hexose metabolic process;0.010246503940289!GO:0000792;heterochromatin;0.0103104950612908!GO:0046467;membrane lipid biosynthetic process;0.0103154681280063!GO:0000178;exosome (RNase complex);0.010444616594452!GO:0005996;monosaccharide metabolic process;0.010444616594452!GO:0048471;perinuclear region of cytoplasm;0.010451408344862!GO:0045859;regulation of protein kinase activity;0.0104625073078974!GO:0031903;microbody membrane;0.0104625073078974!GO:0005778;peroxisomal membrane;0.0104625073078974!GO:0000152;nuclear ubiquitin ligase complex;0.0104865185647236!GO:0008017;microtubule binding;0.0109077502233707!GO:0004860;protein kinase inhibitor activity;0.0110133620969782!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0110356693484924!GO:0046982;protein heterodimerization activity;0.0111061440985421!GO:0030663;COPI coated vesicle membrane;0.0111688659067038!GO:0030126;COPI vesicle coat;0.0111688659067038!GO:0006505;GPI anchor metabolic process;0.0112577955949606!GO:0031123;RNA 3'-end processing;0.0114858806284568!GO:0019783;small conjugating protein-specific protease activity;0.0114858806284568!GO:0051235;maintenance of localization;0.011604350518407!GO:0045045;secretory pathway;0.0116515510636404!GO:0000123;histone acetyltransferase complex;0.0117493593910128!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0118071043895405!GO:0007346;regulation of progression through mitotic cell cycle;0.0118522327290603!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0121447613676802!GO:0045047;protein targeting to ER;0.0121447613676802!GO:0046822;regulation of nucleocytoplasmic transport;0.012416543957839!GO:0003746;translation elongation factor activity;0.0124928243808013!GO:0004843;ubiquitin-specific protease activity;0.0125224374853566!GO:0030119;AP-type membrane coat adaptor complex;0.0132741299157052!GO:0035267;NuA4 histone acetyltransferase complex;0.0134687875865713!GO:0006672;ceramide metabolic process;0.0134687875865713!GO:0000339;RNA cap binding;0.0135111506143583!GO:0005832;chaperonin-containing T-complex;0.0136166632080576!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0136330439396664!GO:0010257;NADH dehydrogenase complex assembly;0.0136330439396664!GO:0033108;mitochondrial respiratory chain complex assembly;0.0136330439396664!GO:0016569;covalent chromatin modification;0.0138961134776917!GO:0046519;sphingoid metabolic process;0.013930935771631!GO:0051348;negative regulation of transferase activity;0.0140091268172222!GO:0051452;cellular pH reduction;0.0140518546579554!GO:0051453;regulation of cellular pH;0.0140518546579554!GO:0045851;pH reduction;0.0140518546579554!GO:0006919;caspase activation;0.0140518546579554!GO:0005663;DNA replication factor C complex;0.0141483327616829!GO:0006626;protein targeting to mitochondrion;0.0141483849422693!GO:0006376;mRNA splice site selection;0.0141640333136435!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0141640333136435!GO:0033673;negative regulation of kinase activity;0.0141640333136435!GO:0006469;negative regulation of protein kinase activity;0.0141640333136435!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0141901867163759!GO:0030137;COPI-coated vesicle;0.0145040138330674!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0145625622314072!GO:0050662;coenzyme binding;0.0145738806085051!GO:0046966;thyroid hormone receptor binding;0.014719050078082!GO:0044454;nuclear chromosome part;0.0150923529597202!GO:0009308;amine metabolic process;0.01578444654655!GO:0018193;peptidyl-amino acid modification;0.01578444654655!GO:0009451;RNA modification;0.0158361427743358!GO:0016790;thiolester hydrolase activity;0.0158361427743358!GO:0007034;vacuolar transport;0.0160959505306105!GO:0031252;leading edge;0.0167695942553932!GO:0008538;proteasome activator activity;0.016868910067066!GO:0005652;nuclear lamina;0.0169811063861515!GO:0019210;kinase inhibitor activity;0.0170085665783218!GO:0032940;secretion by cell;0.017713973062763!GO:0000096;sulfur amino acid metabolic process;0.0179890846053807!GO:0050789;regulation of biological process;0.0181970390891392!GO:0000793;condensed chromosome;0.0188001569370352!GO:0030641;cellular hydrogen ion homeostasis;0.0189480737068954!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0192112428424311!GO:0030131;clathrin adaptor complex;0.0194748207047838!GO:0045936;negative regulation of phosphate metabolic process;0.0197146588182991!GO:0051223;regulation of protein transport;0.0202887489883837!GO:0007004;telomere maintenance via telomerase;0.0203067741351655!GO:0006497;protein amino acid lipidation;0.0203724105277744!GO:0051092;activation of NF-kappaB transcription factor;0.0203724105277744!GO:0046365;monosaccharide catabolic process;0.0209915787667015!GO:0008610;lipid biosynthetic process;0.0217410010554536!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0219153872372729!GO:0016481;negative regulation of transcription;0.0220385424361855!GO:0000118;histone deacetylase complex;0.0222620636946142!GO:0016788;hydrolase activity, acting on ester bonds;0.0225893717711584!GO:0019079;viral genome replication;0.0225893717711584!GO:0019901;protein kinase binding;0.0230684361010585!GO:0016585;chromatin remodeling complex;0.0236624528417296!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0238838377851625!GO:0046426;negative regulation of JAK-STAT cascade;0.0239567813251232!GO:0030518;steroid hormone receptor signaling pathway;0.0246593355426562!GO:0001824;blastocyst development;0.0250068191670676!GO:0000077;DNA damage checkpoint;0.0250948678933666!GO:0008213;protein amino acid alkylation;0.0256426851662696!GO:0006479;protein amino acid methylation;0.0256426851662696!GO:0005092;GDP-dissociation inhibitor activity;0.0259973302039266!GO:0017134;fibroblast growth factor binding;0.0261888788868565!GO:0008156;negative regulation of DNA replication;0.0262469494432613!GO:0046164;alcohol catabolic process;0.0263447736246169!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0265911583509558!GO:0000209;protein polyubiquitination;0.0265911583509558!GO:0004177;aminopeptidase activity;0.0272739613171047!GO:0051297;centrosome organization and biogenesis;0.0276729907376343!GO:0031023;microtubule organizing center organization and biogenesis;0.0276729907376343!GO:0006406;mRNA export from nucleus;0.0277207574119678!GO:0040029;regulation of gene expression, epigenetic;0.0277303733677497!GO:0004221;ubiquitin thiolesterase activity;0.0279546995829296!GO:0046112;nucleobase biosynthetic process;0.028193876637491!GO:0042162;telomeric DNA binding;0.028349911912053!GO:0031323;regulation of cellular metabolic process;0.0285215661103746!GO:0030433;ER-associated protein catabolic process;0.028543596992974!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.028543596992974!GO:0030521;androgen receptor signaling pathway;0.028793621236218!GO:0005784;translocon complex;0.0288338664510551!GO:0031647;regulation of protein stability;0.0288338664510551!GO:0019843;rRNA binding;0.0293820090741756!GO:0009303;rRNA transcription;0.0294194142546475!GO:0043433;negative regulation of transcription factor activity;0.029448340827863!GO:0030508;thiol-disulfide exchange intermediate activity;0.0297608992113632!GO:0006378;mRNA polyadenylation;0.0301084785491217!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0303906071419745!GO:0019320;hexose catabolic process;0.0313038948187907!GO:0004576;oligosaccharyl transferase activity;0.0314268975033128!GO:0005869;dynactin complex;0.032080051121621!GO:0006266;DNA ligation;0.0323198444034509!GO:0019206;nucleoside kinase activity;0.0323198444034509!GO:0000738;DNA catabolic process, exonucleolytic;0.0323877368271932!GO:0016311;dephosphorylation;0.0325125291563588!GO:0006778;porphyrin metabolic process;0.0330166071101461!GO:0033013;tetrapyrrole metabolic process;0.0330166071101461!GO:0046979;TAP2 binding;0.0330166722323654!GO:0046977;TAP binding;0.0330166722323654!GO:0046978;TAP1 binding;0.0330166722323654!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0333084923751708!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0333855863779196!GO:0030134;ER to Golgi transport vesicle;0.0335273226925209!GO:0016570;histone modification;0.0341729688814727!GO:0016126;sterol biosynthetic process;0.0343738886837975!GO:0008250;oligosaccharyl transferase complex;0.0345769924293667!GO:0050811;GABA receptor binding;0.0347755587468402!GO:0019238;cyclohydrolase activity;0.0347755587468402!GO:0005521;lamin binding;0.0354653742761473!GO:0019058;viral infectious cycle;0.0355045154408568!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0358075509863671!GO:0009262;deoxyribonucleotide metabolic process;0.0358640627180352!GO:0006278;RNA-dependent DNA replication;0.0359544877687882!GO:0001836;release of cytochrome c from mitochondria;0.0364363753230291!GO:0007021;tubulin folding;0.0364433187252406!GO:0043621;protein self-association;0.0369245828777841!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0371342205179275!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0371342205179275!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0371342205179275!GO:0042326;negative regulation of phosphorylation;0.0375835415937726!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0377079021904262!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0377079021904262!GO:0009116;nucleoside metabolic process;0.0377744295855941!GO:0006596;polyamine biosynthetic process;0.037798634550938!GO:0030125;clathrin vesicle coat;0.0378630233189871!GO:0030665;clathrin coated vesicle membrane;0.0378630233189871!GO:0001772;immunological synapse;0.0389024877626288!GO:0000175;3'-5'-exoribonuclease activity;0.0389134231600722!GO:0009967;positive regulation of signal transduction;0.039154959688137!GO:0004721;phosphoprotein phosphatase activity;0.0392253859183899!GO:0030127;COPII vesicle coat;0.0397312275903908!GO:0012507;ER to Golgi transport vesicle membrane;0.0397312275903908!GO:0004540;ribonuclease activity;0.0400957081975373!GO:0004523;ribonuclease H activity;0.0419166047971937!GO:0006779;porphyrin biosynthetic process;0.0420694589821793!GO:0033014;tetrapyrrole biosynthetic process;0.0420694589821793!GO:0009081;branched chain family amino acid metabolic process;0.0421164838619378!GO:0043624;cellular protein complex disassembly;0.0422291949534919!GO:0008047;enzyme activator activity;0.0422527291303231!GO:0045926;negative regulation of growth;0.0428148703897143!GO:0043280;positive regulation of caspase activity;0.0436493103749415!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0438350936376894!GO:0007040;lysosome organization and biogenesis;0.0441657261781377!GO:0008537;proteasome activator complex;0.0442678268123369!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0446677947728726!GO:0050178;phenylpyruvate tautomerase activity;0.0447329597347001!GO:0045069;regulation of viral genome replication;0.0448531551135797!GO:0008097;5S rRNA binding;0.0455200337236576!GO:0031371;ubiquitin conjugating enzyme complex;0.0462133051250738!GO:0016301;kinase activity;0.0465112811189905!GO:0005095;GTPase inhibitor activity;0.0467137702003375!GO:0006301;postreplication repair;0.0468074725519928!GO:0006415;translational termination;0.0468227258782862!GO:0042158;lipoprotein biosynthetic process;0.0469630615515445!GO:0033170;DNA-protein loading ATPase activity;0.0470580912966626!GO:0003689;DNA clamp loader activity;0.0470580912966626!GO:0032507;maintenance of cellular protein localization;0.0482511744422344!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0494698305092886!GO:0000097;sulfur amino acid biosynthetic process;0.0495331717561728!GO:0042809;vitamin D receptor binding;0.0495441624015135 | |||
|sample_id=10777 | |sample_id=10777 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=E2F1..5:1.76777210865;RORA:1.71667065527;MYB:1.67925638785;ELF1,2,4:1.52264803499;POU2F1..3:1.5048475823;NFY{A,B,C}:1.44544116374;ZNF148:1.44201998678;TLX2:1.36271898727;RUNX1..3:1.35029789309;PAX3,7:1.30463456862;IKZF2:1.27881306772;ZBTB16:1.27071386673;PBX1:1.17758145375;TOPORS:1.10497393103;AIRE:1.0869710463;ELK1,4_GABP{A,B1}:1.07974960046;NRF1:1.04780225981;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03928311077;PAX4:0.99288572269;PITX1..3:0.926268558028;CRX:0.916302344948;NFIX:0.863974676518;FOXP1:0.812408929552;DMAP1_NCOR{1,2}_SMARC:0.804415247314;NKX3-1:0.795684187808;BREu{core}:0.743963576001;SPI1:0.726249676427;TFDP1:0.708549064608;CDX1,2,4:0.661852129635;YY1:0.653742889195;T:0.60863521867;ETS1,2:0.604800358987;POU1F1:0.581541107031;HOX{A6,A7,B6,B7}:0.555120327073;CEBPA,B_DDIT3:0.515990584977;ALX1:0.513985751059;IRF1,2:0.512827403099;NKX6-1,2:0.506163471355;GATA6:0.484451613514;NR5A1,2:0.483383239855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.457666555624;CUX2:0.437477048961;PAX6:0.35999722093;FOXP3:0.349232586971;MYOD1:0.343550527396;RXRA_VDR{dimer}:0.332306892689;ZNF143:0.315700988088;FOXA2:0.315393591681;HAND1,2:0.312874636701;IRF7:0.308639177064;NKX2-1,4:0.299338233675;FOX{I1,J2}:0.273971545079;SPIB:0.271590715986;ATF5_CREB3:0.268739943242;POU5F1:0.253119763866;CREB1:0.245029120874;PDX1:0.226892615017;STAT5{A,B}:0.214065021138;ZNF384:0.190097633059;HES1:0.163415252327;SOX{8,9,10}:0.157782116699;PPARG:0.132625750553;AHR_ARNT_ARNT2:0.123512965994;GFI1:0.105247640705;FOX{F1,F2,J1}:0.104251331704;OCT4_SOX2{dimer}:0.095256521696;STAT2,4,6:0.0854827379472;PRRX1,2:0.0689537000116;HBP1_HMGB_SSRP1_UBTF:0.0618869445425;ATF4:0.0568752771604;FOXQ1:0.0431621261433;NKX2-2,8:0.0429996100203;BPTF:0.0225723638506;FOXM1:-0.0169758247179;GCM1,2:-0.0193596897061;ZEB1:-0.0295464053194;LEF1_TCF7_TCF7L1,2:-0.0318254363442;FOXD3:-0.0436495377788;EN1,2:-0.0452963727733;EVI1:-0.0507428103488;RFX2..5_RFXANK_RFXAP:-0.0602418385823;bHLH_family:-0.0936831310096;HMGA1,2:-0.105927922023;TGIF1:-0.114900256079;SREBF1,2:-0.140776024559;NFKB1_REL_RELA:-0.157182383054;HNF4A_NR2F1,2:-0.185206679101;MYFfamily:-0.191108905259;NR1H4:-0.197550010232;VSX1,2:-0.19920416453;SNAI1..3:-0.202086268033;HNF1A:-0.209826809001;PAX8:-0.211177766635;PAX2:-0.231134482537;ARID5B:-0.258100628241;UFEwm:-0.324899509621;ZNF238:-0.334735650245;AR:-0.344424927981;NFE2:-0.366280817917;ADNP_IRX_SIX_ZHX:-0.404244266806;FOS_FOS{B,L1}_JUN{B,D}:-0.412634514365;NANOG{mouse}:-0.421378904322;DBP:-0.425614176806;NR6A1:-0.428798440972;ESR1:-0.457772938187;LHX3,4:-0.462732098127;FOSL2:-0.474844431367;NKX2-3_NKX2-5:-0.478161916454;HLF:-0.482891912567;CDC5L:-0.50923897283;SOX5:-0.538192550493;BACH2:-0.557480435046;ATF2:-0.559247927119;NANOG:-0.560423774001;ESRRA:-0.571092543636;MTF1:-0.585294304709;GATA4:-0.607598628611;HSF1,2:-0.608005460617;FOX{D1,D2}:-0.642289118763;HOX{A5,B5}:-0.647497244668;HMX1:-0.65557181828;SRF:-0.661798295186;LMO2:-0.664076188081;TEF:-0.672897059564;RREB1:-0.675173624759;NFE2L1:-0.702093848004;EP300:-0.706530972568;TBP:-0.706771392246;NFE2L2:-0.708190452422;GTF2A1,2:-0.718353702603;POU3F1..4:-0.720070013738;HOXA9_MEIS1:-0.724545225321;FOXO1,3,4:-0.734572419829;SOX2:-0.752515421606;TFAP4:-0.753174163721;NKX3-2:-0.759761391712;ZIC1..3:-0.781162644362;MEF2{A,B,C,D}:-0.790726133668;ZNF423:-0.81741900629;NR3C1:-0.836955763645;REST:-0.838053095289;ALX4:-0.852661721973;ZFP161:-0.853738676917;TAL1_TCF{3,4,12}:-0.897585239728;TFCP2:-0.897820832872;ONECUT1,2:-0.901901275848;HOX{A4,D4}:-0.909347525686;GLI1..3:-0.920080178532;XCPE1{core}:-0.933749107542;NFIL3:-0.938020755189;FOXN1:-0.943412349558;SPZ1:-0.954326586539;ATF6:-0.972404708231;TBX4,5:-0.977199374521;JUN:-0.990136989193;GFI1B:-1.03233202885;STAT1,3:-1.04647028807;RFX1:-1.04731276019;MYBL2:-1.04868745603;KLF4:-1.09588343993;TFAP2B:-1.0985613453;RBPJ:-1.10214652179;SMAD1..7,9:-1.11038896146;POU6F1:-1.13031277339;ZBTB6:-1.13972575748;TP53:-1.1399995865;NFATC1..3:-1.14559814778;SOX17:-1.19615078229;PAX5:-1.2398237084;MAZ:-1.26187382852;PRDM1:-1.262209479;MED-1{core}:-1.26366726691;IKZF1:-1.27125795485;HIC1:-1.28820772686;GZF1:-1.29591699583;EGR1..3:-1.29952580069;NHLH1,2:-1.33019487243;MAFB:-1.34351200923;MTE{core}:-1.38915268445;SP1:-1.41436556028;HIF1A:-1.42896108429;FOXL1:-1.44943769059;GTF2I:-1.46613481382;TEAD1:-1.52943100821;PATZ1:-1.53987172471;PAX1,9:-1.58367022619;RXR{A,B,G}:-1.64503140642;XBP1:-1.7618663683;EBF1:-1.89164429775;TLX1..3_NFIC{dimer}:-1.90190987077;TFAP2{A,C}:-1.91104246983;MZF1:-1.96937369993 | |top_motifs=E2F1..5:1.76777210865;RORA:1.71667065527;MYB:1.67925638785;ELF1,2,4:1.52264803499;POU2F1..3:1.5048475823;NFY{A,B,C}:1.44544116374;ZNF148:1.44201998678;TLX2:1.36271898727;RUNX1..3:1.35029789309;PAX3,7:1.30463456862;IKZF2:1.27881306772;ZBTB16:1.27071386673;PBX1:1.17758145375;TOPORS:1.10497393103;AIRE:1.0869710463;ELK1,4_GABP{A,B1}:1.07974960046;NRF1:1.04780225981;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.03928311077;PAX4:0.99288572269;PITX1..3:0.926268558028;CRX:0.916302344948;NFIX:0.863974676518;FOXP1:0.812408929552;DMAP1_NCOR{1,2}_SMARC:0.804415247314;NKX3-1:0.795684187808;BREu{core}:0.743963576001;SPI1:0.726249676427;TFDP1:0.708549064608;CDX1,2,4:0.661852129635;YY1:0.653742889195;T:0.60863521867;ETS1,2:0.604800358987;POU1F1:0.581541107031;HOX{A6,A7,B6,B7}:0.555120327073;CEBPA,B_DDIT3:0.515990584977;ALX1:0.513985751059;IRF1,2:0.512827403099;NKX6-1,2:0.506163471355;GATA6:0.484451613514;NR5A1,2:0.483383239855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.457666555624;CUX2:0.437477048961;PAX6:0.35999722093;FOXP3:0.349232586971;MYOD1:0.343550527396;RXRA_VDR{dimer}:0.332306892689;ZNF143:0.315700988088;FOXA2:0.315393591681;HAND1,2:0.312874636701;IRF7:0.308639177064;NKX2-1,4:0.299338233675;FOX{I1,J2}:0.273971545079;SPIB:0.271590715986;ATF5_CREB3:0.268739943242;POU5F1:0.253119763866;CREB1:0.245029120874;PDX1:0.226892615017;STAT5{A,B}:0.214065021138;ZNF384:0.190097633059;HES1:0.163415252327;SOX{8,9,10}:0.157782116699;PPARG:0.132625750553;AHR_ARNT_ARNT2:0.123512965994;GFI1:0.105247640705;FOX{F1,F2,J1}:0.104251331704;OCT4_SOX2{dimer}:0.095256521696;STAT2,4,6:0.0854827379472;PRRX1,2:0.0689537000116;HBP1_HMGB_SSRP1_UBTF:0.0618869445425;ATF4:0.0568752771604;FOXQ1:0.0431621261433;NKX2-2,8:0.0429996100203;BPTF:0.0225723638506;FOXM1:-0.0169758247179;GCM1,2:-0.0193596897061;ZEB1:-0.0295464053194;LEF1_TCF7_TCF7L1,2:-0.0318254363442;FOXD3:-0.0436495377788;EN1,2:-0.0452963727733;EVI1:-0.0507428103488;RFX2..5_RFXANK_RFXAP:-0.0602418385823;bHLH_family:-0.0936831310096;HMGA1,2:-0.105927922023;TGIF1:-0.114900256079;SREBF1,2:-0.140776024559;NFKB1_REL_RELA:-0.157182383054;HNF4A_NR2F1,2:-0.185206679101;MYFfamily:-0.191108905259;NR1H4:-0.197550010232;VSX1,2:-0.19920416453;SNAI1..3:-0.202086268033;HNF1A:-0.209826809001;PAX8:-0.211177766635;PAX2:-0.231134482537;ARID5B:-0.258100628241;UFEwm:-0.324899509621;ZNF238:-0.334735650245;AR:-0.344424927981;NFE2:-0.366280817917;ADNP_IRX_SIX_ZHX:-0.404244266806;FOS_FOS{B,L1}_JUN{B,D}:-0.412634514365;NANOG{mouse}:-0.421378904322;DBP:-0.425614176806;NR6A1:-0.428798440972;ESR1:-0.457772938187;LHX3,4:-0.462732098127;FOSL2:-0.474844431367;NKX2-3_NKX2-5:-0.478161916454;HLF:-0.482891912567;CDC5L:-0.50923897283;SOX5:-0.538192550493;BACH2:-0.557480435046;ATF2:-0.559247927119;NANOG:-0.560423774001;ESRRA:-0.571092543636;MTF1:-0.585294304709;GATA4:-0.607598628611;HSF1,2:-0.608005460617;FOX{D1,D2}:-0.642289118763;HOX{A5,B5}:-0.647497244668;HMX1:-0.65557181828;SRF:-0.661798295186;LMO2:-0.664076188081;TEF:-0.672897059564;RREB1:-0.675173624759;NFE2L1:-0.702093848004;EP300:-0.706530972568;TBP:-0.706771392246;NFE2L2:-0.708190452422;GTF2A1,2:-0.718353702603;POU3F1..4:-0.720070013738;HOXA9_MEIS1:-0.724545225321;FOXO1,3,4:-0.734572419829;SOX2:-0.752515421606;TFAP4:-0.753174163721;NKX3-2:-0.759761391712;ZIC1..3:-0.781162644362;MEF2{A,B,C,D}:-0.790726133668;ZNF423:-0.81741900629;NR3C1:-0.836955763645;REST:-0.838053095289;ALX4:-0.852661721973;ZFP161:-0.853738676917;TAL1_TCF{3,4,12}:-0.897585239728;TFCP2:-0.897820832872;ONECUT1,2:-0.901901275848;HOX{A4,D4}:-0.909347525686;GLI1..3:-0.920080178532;XCPE1{core}:-0.933749107542;NFIL3:-0.938020755189;FOXN1:-0.943412349558;SPZ1:-0.954326586539;ATF6:-0.972404708231;TBX4,5:-0.977199374521;JUN:-0.990136989193;GFI1B:-1.03233202885;STAT1,3:-1.04647028807;RFX1:-1.04731276019;MYBL2:-1.04868745603;KLF4:-1.09588343993;TFAP2B:-1.0985613453;RBPJ:-1.10214652179;SMAD1..7,9:-1.11038896146;POU6F1:-1.13031277339;ZBTB6:-1.13972575748;TP53:-1.1399995865;NFATC1..3:-1.14559814778;SOX17:-1.19615078229;PAX5:-1.2398237084;MAZ:-1.26187382852;PRDM1:-1.262209479;MED-1{core}:-1.26366726691;IKZF1:-1.27125795485;HIC1:-1.28820772686;GZF1:-1.29591699583;EGR1..3:-1.29952580069;NHLH1,2:-1.33019487243;MAFB:-1.34351200923;MTE{core}:-1.38915268445;SP1:-1.41436556028;HIF1A:-1.42896108429;FOXL1:-1.44943769059;GTF2I:-1.46613481382;TEAD1:-1.52943100821;PATZ1:-1.53987172471;PAX1,9:-1.58367022619;RXR{A,B,G}:-1.64503140642;XBP1:-1.7618663683;EBF1:-1.89164429775;TLX1..3_NFIC{dimer}:-1.90190987077;TFAP2{A,C}:-1.91104246983;MZF1:-1.96937369993 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10777-110G3;search_select_hide=table117:FF:10777-110G3 | |||
}} | }} | ||
Latest revision as of 15:03, 3 June 2020
| Name: | NK T cell leukemia cell line:KHYG-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11867 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11867
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11867
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0626 |
| 10 | 10 | 0.00474 |
| 100 | 100 | 0.299 |
| 101 | 101 | 0.0264 |
| 102 | 102 | 0.46 |
| 103 | 103 | 0.477 |
| 104 | 104 | 0.581 |
| 105 | 105 | 0.888 |
| 106 | 106 | 0.4 |
| 107 | 107 | 0.324 |
| 108 | 108 | 0.992 |
| 109 | 109 | 0.0463 |
| 11 | 11 | 0.041 |
| 110 | 110 | 0.307 |
| 111 | 111 | 0.126 |
| 112 | 112 | 0.479 |
| 113 | 113 | 0.466 |
| 114 | 114 | 0.314 |
| 115 | 115 | 0.489 |
| 116 | 116 | 0.809 |
| 117 | 117 | 0.0176 |
| 118 | 118 | 0.597 |
| 119 | 119 | 0.505 |
| 12 | 12 | 0.875 |
| 120 | 120 | 0.958 |
| 121 | 121 | 0.976 |
| 122 | 122 | 0.666 |
| 123 | 123 | 2.6626e-4 |
| 124 | 124 | 0.0067 |
| 125 | 125 | 0.644 |
| 126 | 126 | 0.484 |
| 127 | 127 | 0.295 |
| 128 | 128 | 0.478 |
| 129 | 129 | 0.625 |
| 13 | 13 | 0.162 |
| 130 | 130 | 0.286 |
| 131 | 131 | 0.491 |
| 132 | 132 | 0.913 |
| 133 | 133 | 0.608 |
| 134 | 134 | 0.776 |
| 135 | 135 | 0.7 |
| 136 | 136 | 0.116 |
| 137 | 137 | 0.584 |
| 138 | 138 | 0.324 |
| 139 | 139 | 0.501 |
| 14 | 14 | 0.756 |
| 140 | 140 | 0.534 |
| 141 | 141 | 0.526 |
| 142 | 142 | 0.665 |
| 143 | 143 | 3.44943e-4 |
| 144 | 144 | 0.661 |
| 145 | 145 | 0.589 |
| 146 | 146 | 0.944 |
| 147 | 147 | 0.194 |
| 148 | 148 | 0.23 |
| 149 | 149 | 0.193 |
| 15 | 15 | 0.281 |
| 150 | 150 | 0.23 |
| 151 | 151 | 0.983 |
| 152 | 152 | 0.0492 |
| 153 | 153 | 0.57 |
| 154 | 154 | 0.87 |
| 155 | 155 | 0.0771 |
| 156 | 156 | 0.84 |
| 157 | 157 | 0.63 |
| 158 | 158 | 0.958 |
| 159 | 159 | 0.404 |
| 16 | 16 | 0.541 |
| 160 | 160 | 0.812 |
| 161 | 161 | 0.232 |
| 162 | 162 | 0.863 |
| 163 | 163 | 0.462 |
| 164 | 164 | 0.76 |
| 165 | 165 | 0.754 |
| 166 | 166 | 0.441 |
| 167 | 167 | 0.0362 |
| 168 | 168 | 0.642 |
| 169 | 169 | 0.856 |
| 17 | 17 | 0.621 |
| 18 | 18 | 0.315 |
| 19 | 19 | 0.677 |
| 2 | 2 | 0.545 |
| 20 | 20 | 0.405 |
| 21 | 21 | 0.265 |
| 22 | 22 | 0.619 |
| 23 | 23 | 0.663 |
| 24 | 24 | 0.582 |
| 25 | 25 | 0.0551 |
| 26 | 26 | 0.121 |
| 27 | 27 | 0.576 |
| 28 | 28 | 0.431 |
| 29 | 29 | 0.0261 |
| 3 | 3 | 0.134 |
| 30 | 30 | 0.135 |
| 31 | 31 | 0.797 |
| 32 | 32 | 0.363 |
| 33 | 33 | 0.418 |
| 34 | 34 | 0.691 |
| 35 | 35 | 0.305 |
| 36 | 36 | 0.0348 |
| 37 | 37 | 0.371 |
| 38 | 38 | 0.569 |
| 39 | 39 | 0.669 |
| 4 | 4 | 0.0126 |
| 40 | 40 | 0.0825 |
| 41 | 41 | 0.467 |
| 42 | 42 | 0.146 |
| 43 | 43 | 0.326 |
| 44 | 44 | 0.317 |
| 45 | 45 | 0.477 |
| 46 | 46 | 0.197 |
| 47 | 47 | 0.0369 |
| 48 | 48 | 0.135 |
| 49 | 49 | 0.0105 |
| 5 | 5 | 0.826 |
| 50 | 50 | 0.677 |
| 51 | 51 | 0.931 |
| 52 | 52 | 0.0664 |
| 53 | 53 | 0.201 |
| 54 | 54 | 0.997 |
| 55 | 55 | 0.522 |
| 56 | 56 | 0.677 |
| 57 | 57 | 0.199 |
| 58 | 58 | 0.102 |
| 59 | 59 | 0.889 |
| 6 | 6 | 0.826 |
| 60 | 60 | 0.923 |
| 61 | 61 | 0.1 |
| 62 | 62 | 0.0909 |
| 63 | 63 | 0.644 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.783 |
| 66 | 66 | 3.55465e-7 |
| 67 | 67 | 0.623 |
| 68 | 68 | 0.643 |
| 69 | 69 | 0.735 |
| 7 | 7 | 0.105 |
| 70 | 70 | 0.324 |
| 71 | 71 | 0.0387 |
| 72 | 72 | 0.549 |
| 73 | 73 | 0.921 |
| 74 | 74 | 0.817 |
| 75 | 75 | 0.00855 |
| 76 | 76 | 0.518 |
| 77 | 77 | 0.214 |
| 78 | 78 | 0.305 |
| 79 | 79 | 0.265 |
| 8 | 8 | 0.381 |
| 80 | 80 | 0.862 |
| 81 | 81 | 0.41 |
| 82 | 82 | 0.83 |
| 83 | 83 | 0.7 |
| 84 | 84 | 0.523 |
| 85 | 85 | 0.174 |
| 86 | 86 | 0.279 |
| 87 | 87 | 0.176 |
| 88 | 88 | 0.996 |
| 89 | 89 | 0.185 |
| 9 | 9 | 0.772 |
| 90 | 90 | 0.177 |
| 91 | 91 | 0.346 |
| 92 | 92 | 0.495 |
| 93 | 93 | 0.627 |
| 94 | 94 | 0.358 |
| 95 | 95 | 0.0164 |
| 96 | 96 | 0.415 |
| 97 | 97 | 0.0967 |
| 98 | 98 | 0.321 |
| 99 | 99 | 0.384 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11867
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000814 mature NK T cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102504 T-lymphoblastic leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0002127 (innate effector T cell)
0000911 (effector T cell)
0000814 (mature NK T cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102504 (T-lymphoblastic leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0100773 (lymphoblastoid cell line sample)
0100739 (lymphoblastic leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
CL:0002425 (early T lineage precursor)
