FF:10812-111B2: Difference between revisions

Latest revision as of 15:06, 3 June 2020

Name:	normal intestinal epithelial cell line:FHs 74 Int
Species:	Human (Homo sapiens)
Library ID:	CNhs11950
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	small intestine
dev stage	NA
sex	female
age	fetal
cell type	epithelial cell, intestinal
cell line	FHs 74 Int
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005916

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11950		CAGE		DRX007971		DRR008843

Accession ID Hg19

Library id		BAM		CTSS
CNhs11950		DRZ000268		DRZ001653

Accession ID Hg38

Library id		BAM		CTSS
CNhs11950		DRZ011618		DRZ013003

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.003
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.109
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.723
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.116
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.129
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0272
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.538
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.56
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.116
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0453
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0796
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.995
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.575
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.154
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.115
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.639
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.645
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0675
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.748
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.207
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11950

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.395
MA0003.1	MA0003.1	0.251
MA0004.1	MA0004.1	0.0273
MA0006.1	MA0006.1	0.088
MA0007.1	MA0007.1	0.52
MA0009.1	MA0009.1	0.958
MA0014.1	MA0014.1	0.724
MA0017.1	MA0017.1	0.927
MA0018.2	MA0018.2	3.39501e-7
MA0019.1	MA0019.1	0.644
MA0024.1	MA0024.1	0.00654
MA0025.1	MA0025.1	8.20993e-4
MA0027.1	MA0027.1	0.885
MA0028.1	MA0028.1	0.00323
MA0029.1	MA0029.1	0.503
MA0030.1	MA0030.1	0.426
MA0031.1	MA0031.1	0.0892
MA0035.2	MA0035.2	0.555
MA0038.1	MA0038.1	0.119
MA0039.2	MA0039.2	0.0416
MA0040.1	MA0040.1	0.201
MA0041.1	MA0041.1	0.968
MA0042.1	MA0042.1	0.229
MA0043.1	MA0043.1	1.50361e-6
MA0046.1	MA0046.1	0.393
MA0047.2	MA0047.2	0.751
MA0048.1	MA0048.1	0.351
MA0050.1	MA0050.1	2.705e-8
MA0051.1	MA0051.1	5.02121e-6
MA0052.1	MA0052.1	0.503
MA0055.1	MA0055.1	0.162
MA0057.1	MA0057.1	0.0926
MA0058.1	MA0058.1	0.00111
MA0059.1	MA0059.1	0.461
MA0060.1	MA0060.1	2.13449e-9
MA0061.1	MA0061.1	0.381
MA0062.2	MA0062.2	5.10221e-9
MA0065.2	MA0065.2	0.147
MA0066.1	MA0066.1	0.354
MA0067.1	MA0067.1	0.00519
MA0068.1	MA0068.1	0.736
MA0069.1	MA0069.1	0.294
MA0070.1	MA0070.1	0.372
MA0071.1	MA0071.1	0.397
MA0072.1	MA0072.1	0.823
MA0073.1	MA0073.1	0.804
MA0074.1	MA0074.1	0.255
MA0076.1	MA0076.1	1.97872e-4
MA0077.1	MA0077.1	0.645
MA0078.1	MA0078.1	0.913
MA0079.2	MA0079.2	0.89
MA0080.2	MA0080.2	4.62472e-8
MA0081.1	MA0081.1	0.0213
MA0083.1	MA0083.1	0.123
MA0084.1	MA0084.1	0.749
MA0087.1	MA0087.1	0.953
MA0088.1	MA0088.1	0.513
MA0090.1	MA0090.1	0.00432
MA0091.1	MA0091.1	0.00346
MA0092.1	MA0092.1	0.452
MA0093.1	MA0093.1	0.0169
MA0099.2	MA0099.2	2.65772e-6
MA0100.1	MA0100.1	0.0758
MA0101.1	MA0101.1	0.0101
MA0102.2	MA0102.2	0.391
MA0103.1	MA0103.1	0.0718
MA0104.2	MA0104.2	0.00536
MA0105.1	MA0105.1	0.646
MA0106.1	MA0106.1	0.294
MA0107.1	MA0107.1	0.0663
MA0108.2	MA0108.2	0.585
MA0111.1	MA0111.1	0.987
MA0112.2	MA0112.2	0.00943
MA0113.1	MA0113.1	0.914
MA0114.1	MA0114.1	0.688
MA0115.1	MA0115.1	0.238
MA0116.1	MA0116.1	0.0506
MA0117.1	MA0117.1	0.107
MA0119.1	MA0119.1	0.0266
MA0122.1	MA0122.1	0.334
MA0124.1	MA0124.1	0.0127
MA0125.1	MA0125.1	0.0511
MA0131.1	MA0131.1	0.0908
MA0135.1	MA0135.1	0.0216
MA0136.1	MA0136.1	2.45155e-12
MA0137.2	MA0137.2	0.735
MA0138.2	MA0138.2	0.276
MA0139.1	MA0139.1	0.581
MA0140.1	MA0140.1	0.545
MA0141.1	MA0141.1	0.259
MA0142.1	MA0142.1	0.785
MA0143.1	MA0143.1	0.496
MA0144.1	MA0144.1	0.705
MA0145.1	MA0145.1	0.103
MA0146.1	MA0146.1	0.566
MA0147.1	MA0147.1	0.0271
MA0148.1	MA0148.1	0.993
MA0149.1	MA0149.1	0.483
MA0150.1	MA0150.1	0.0142
MA0152.1	MA0152.1	0.981
MA0153.1	MA0153.1	0.922
MA0154.1	MA0154.1	0.206
MA0155.1	MA0155.1	0.109
MA0156.1	MA0156.1	1.13956e-9
MA0157.1	MA0157.1	0.249
MA0159.1	MA0159.1	0.276
MA0160.1	MA0160.1	0.816
MA0162.1	MA0162.1	0.034
MA0163.1	MA0163.1	0.00571
MA0164.1	MA0164.1	0.794
MA0258.1	MA0258.1	0.0211
MA0259.1	MA0259.1	0.0623

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11950

Novel motif	Logo	P-value
1	1	0.983
10	10	0.872
100	100	0.249
101	101	0.249
102	102	0.316
103	103	0.203
104	104	0.679
105	105	0.102
106	106	0.0192
107	107	0.013
108	108	0.207
109	109	0.0736
11	11	0.352
110	110	0.38
111	111	0.766
112	112	0.219
113	113	0.555
114	114	0.196
115	115	0.0014
116	116	0.0188
117	117	0.637
118	118	0.547
119	119	0.239
12	12	0.265
120	120	0.338
121	121	0.0674
122	122	0.0369
123	123	0.362
124	124	0.477
125	125	0.86
126	126	0.958
127	127	0.994
128	128	0.0295
129	129	0.139
13	13	0.77
130	130	0.708
131	131	0.676
132	132	0.37
133	133	0.922
134	134	0.829
135	135	0.675
136	136	0.229
137	137	0.09
138	138	0.952
139	139	0.577
14	14	0.236
140	140	0.86
141	141	0.82
142	142	0.759
143	143	0.959
144	144	0.552
145	145	0.444
146	146	0.72
147	147	0.23
148	148	0.419
149	149	0.0216
15	15	0.504
150	150	0.314
151	151	0.411
152	152	0.00342
153	153	0.372
154	154	0.542
155	155	0.0795
156	156	0.694
157	157	0.264
158	158	0.00486
159	159	0.648
16	16	0.0471
160	160	0.799
161	161	0.935
162	162	0.661
163	163	0.304
164	164	0.0867
165	165	0.468
166	166	0.0236
167	167	0.893
168	168	0.898
169	169	0.0379
17	17	0.471
18	18	0.355
19	19	0.02
2	2	0.26
20	20	0.184
21	21	0.123
22	22	0.438
23	23	0.267
24	24	0.844
25	25	0.495
26	26	0.191
27	27	0.249
28	28	0.194
29	29	0.39
3	3	0.404
30	30	0.506
31	31	0.463
32	32	1.19795e-14
33	33	0.591
34	34	0.697
35	35	0.507
36	36	0.105
37	37	0.175
38	38	0.72
39	39	0.478
4	4	0.289
40	40	0.733
41	41	0.293
42	42	0.761
43	43	0.217
44	44	0.015
45	45	0.711
46	46	0.265
47	47	0.478
48	48	0.962
49	49	0.943
5	5	0.875
50	50	0.502
51	51	0.45
52	52	0.604
53	53	0.313
54	54	0.603
55	55	0.253
56	56	0.718
57	57	0.533
58	58	0.812
59	59	0.0101
6	6	0.871
60	60	0.796
61	61	0.419
62	62	0.494
63	63	0.375
64	64	0.915
65	65	0.412
66	66	0.184
67	67	0.503
68	68	0.598
69	69	0.344
7	7	0.483
70	70	0.125
71	71	0.104
72	72	0.637
73	73	0.00444
74	74	0.734
75	75	0.818
76	76	0.847
77	77	0.0183
78	78	0.439
79	79	7.9524e-4
8	8	0.0945
80	80	0.0705
81	81	0.537
82	82	0.201
83	83	0.811
84	84	0.913
85	85	0.0216
86	86	0.656
87	87	0.266
88	88	0.9
89	89	0.165
9	9	0.46
90	90	0.664
91	91	0.5
92	92	0.356
93	93	0.0842
94	94	0.644
95	95	0.0428
96	96	0.918
97	97	0.773
98	98	0.744
99	99	3.39551e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11950

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002563 intestinal epithelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100003 intestinal cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100003 (intestinal cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005916
+|accession_numbers=CAGE;DRX007971;DRR008843;DRZ000268;DRZ001653;DRZ011618;DRZ013003
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
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L2;;chr5:124082279..124082319,-!p3@ZNF608!0.27!1.22!ZNF608;;chr5:137804405..137804444,+!p3@EGR1!0.27!1.22!EGR1;;chr6:45390599..45390662,+!p11@RUNX2!0.27!1.22!RUNX2;;chr6:85473156..85473210,-!p2@TBX18!0.27!1.22!TBX18;;chr3:141121164..141121249,+!p1@ZBTB38!0.26!27.56!ZBTB38;;chr2:85198369..85198483,+!p2@KCMF1!0.26!18.99!KCMF1;;chr7:17338266..17338282,+!p1@AHR!0.26!17.15!AHR;;chr4:2263861..2263883,-!p2@MXD4!0.26!9.19!MXD4;;chr19:58144529..58144579,+!p1@ZNF211!0.26!8.27!ZNF211;;chr3:44596679..44596726,+!p1@ZNF167!0.26!6.43!ZNF167;;chr19:44455368..44455396,+!p1@ZNF221!0.26!4.90!ZNF221;;chr9:20622444..20622468,-!p2@MLLT3!0.26!4.59!MLLT3;;chr19:36705617..36705644,+!p4@ZNF146!0.26!3.98!ZNF146;;chr18:3451646..3451691,+!p3@TGIF1!0.26!3.67!TGIF1;;chr17:46655730..46655791,-!p1@HOXB4!0.26!3.37!HOXB4;;chr6:144329500..144329526,-!p4@PLAGL1!0.26!3.06!PLAGL1;;chr10:63809077..63809089,+!p5@ARID5B!0.26!2.76!ARID5B;;chr19:13134457..13134462,+!p5@NFIX!0.26!2.14!NFIX;;chr3:150126038..150126052,+!p8@TSC22D2!0.26!2.14!TSC22D2;;chrX:129244655..129244697,-!p4@ELF4!0.26!2.14!ELF4;;chr1:8924055..8924074,-!p9@ENO1!0.26!2.14!ENO1;;chr10:3824332..3824425,-!p4@KLF6!0.26!1.84!KLF6;;chr9:2015275..2015287,+!p8@SMARCA2!0.26!1.84!SMARCA2;;chr9:73028638..73028650,-!p7@KLF9!0.26!1.84!KLF9;;chr4:103422076..103422117,+!p5@NFKB1!0.26!1.53!NFKB1;;chr14:62193465..62193490,+!p7@HIF1A!0.26!1.53!HIF1A;;chr14:62213827..62213853,+!p6@HIF1A!0.26!1.53!HIF1A;;chr19:44764031..44764072,+!p1@ZNF233!0.26!1.22!ZNF233;;chr1:23696448..23696453,-!p5@ZNF436!0.26!1.22!ZNF436;;chr2:8822176..8822196,+!p1@ID2!0.25!227.85!ID2;;chr5:137801160..137801176,+!p1@EGR1!0.25!160.78!EGR1;;chr19:45504688..45504782,+!p1@RELB!0.25!9.19!RELB;;chr2:178128199..178128245,-!p3@NFE2L2!0.25!7.96!NFE2L2;;chr12:27485823..27485868,+!p2@ARNTL2!0.25!5.82!ARNTL2;;chr19:12146483..12146546,-!p1@ZNF433!0.25!5.21!ZNF433;;chr4:76439649..76439662,+!p2@THAP6!0.25!3.06!THAP6;;chr19:926055..926068,+!p2@ARID3A!0.25!2.76!ARID3A;;chr18:53254566..53254567,-!p8@TCF4!0.25!1.84!TCF4;;chr2:208030299..208030332,-!p6@KLF7!0.25!1.84!KLF7;;chr6:45390269..45390298,+!p5@RUNX2!0.25!1.84!RUNX2;;chr15:96876966..96877017,+!p12@NR2F2!0.25!1.53!NR2F2;;chr19:12203069..12203094,+!p2@ZNF788!0.25!1.53!ZNF788;;chr17:40440225..40440268,+!p3@STAT5A!0.25!1.22!STAT5A;;chr19:35417939..35417963,+!p3@ZNF30!0.25!1.22!ZNF30;;chr6:1612248..1612281,+!p2@FOXC1!0.25!0.92!FOXC1;;chr2:121493717..121493755,+!p3@GLI2!0.25!0.92!GLI2;;chr11:65667846..65667868,-!p1@FOSL1!0.24!41.65!FOSL1;;chr10:35415978..35416050,+!p5@CREM!0.24!5.82!CREM;;chr19:44809143..44809187,-!p1@ZNF235!0.24!3.98!ZNF235;;chr3:52001426..52001447,-!p3@PCBP4!0.24!3.67!PCBP4;;chr11:12696002..12696022,+!p2@TEAD1!0.24!3.06!TEAD1;;chr14:35872453..35872485,-!p2@NFKBIA!0.24!3.06!NFKBIA;;chr15:61521417..61521460,-!p2@RORA!0.24!2.76!RORA;;chr4:144435112..144435176,+!p3@SMARCA5!0.24!2.45!SMARCA5;;chr19:19976714..19976729,+!p3@ZNF253!0.24!2.14!ZNF253;;chr20:33413372..33413389,-!p2@NCOA6!0.24!2.14!NCOA6;;chr13:41635104..41635124,-!p6@ELF1!0.24!1.84!ELF1;;chr10:94449649..94449664,+!p3@HHEX!0.24!1.53!HHEX;;chr18:56530136..56530199,+!p3@ZNF532!0.24!1.53!ZNF532;;chr1:156470323..156470332,-!p4@MEF2D!0.24!1.53!MEF2D;;chr1:8926441..8926473,-!p10@ENO1!0.24!1.53!ENO1;;chr19:37407411..37407451,+!p3@ZNF568!0.24!1.22!ZNF568;;chr6:21594391..21594431,+!p9@SOX4!0.24!1.22!SOX4;;chr6:126240463..126240489,+!p6@NCOA7!0.24!0.92!NCOA7;;chr10:63808979..63808990,+!p8@ARID5B!0.24!0.92!ARID5B;;chr14:35872414..35872425,-!p7@NFKBIA!0.24!0.92!NFKBIA;;chr4:106157017..106157029,+!p7@TET2!0.24!0.92!TET2;;chr15:76629097..76629120,+!p2@ISL2!0.24!0.92!ISL2;;chr17:46622440..46622477,-!p5@HOXB2!0.24!0.92!HOXB2;;chr14:69259772..69259790,-!p1@ZFP36L1!0.23!157.72!ZFP36L1;;chr20:30193083..30193098,+!p1@ID1!0.23!125.87!ID1;;chr22:30162924..30163005,-!p1@ZMAT5!0.23!18.68!ZMAT5;;chr12:124873357..124873401,-!p1@NCOR2!0.23!17.15!NCOR2;;chr19:44488330..44488379,+!p1@ZNF155!0.23!6.74!ZNF155;;chr19:11998584..11998649,+!p1@ZNF69!0.23!6.12!ZNF69;;chr11:128392273..128392308,-!p2@ETS1!0.23!5.82!ETS1;;chr12:57504975..57505019,-!p2@STAT6!0.23!5.51!STAT6;;chr10:94449703..94449718,+!p1@HHEX!0.23!5.21!HHEX;;chr9:73028332..73028385,-!p3@KLF9!0.23!4.59!KLF9;;chr12:57919293..57919311,+!p3@MBD6!0.23!3.37!MBD6;;chr13:20357110..20357121,-!p2@PSPC1!0.23!3.37!PSPC1;;chr8:48650982..48651023,-!p3@CEBPD!0.23!3.06!CEBPD;;chr3:114819124..114819200,-!p3@ZBTB20!0.23!2.76!ZBTB20;;chr12:48298765..48298783,-!p2@VDR!0.23!2.45!VDR;;chr12:53853054..53853092,+!p6@PCBP2!0.23!2.14!PCBP2;;chr10:3819310..3819325,-!p5@KLF6!0.23!1.22!KLF6;;chr5:88179518..88179569,-!p5@MEF2C!0.23!1.22!MEF2C;;chr19:13136241..13136258,+!p7@NFIX!0.23!1.22!NFIX;;chr19:24216201..24216212,+!p4@ZNF254!0.23!1.22!ZNF254;;chr15:35280863..35280908,-!p3@ZNF770!0.23!0.92!ZNF770;;chr19:12175596..12175605,+!p4@ZNF844!0.23!0.92!ZNF844;;chr22:39917189..39917207,+!p5@ATF4!0.23!0.92!ATF4;;chr3:185826286..185826318,-!p5@ETV5!0.23!0.92!ETV5;;chr14:61116168..61116180,-!p2@SIX1!0.23!0.92!SIX1;;chr20:47894569..47894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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520intestinal%2520epithelial%2520cell%2520line%253aFHs%252074%2520Int.CNhs11950.10812-111B2.hg19.ctss.bed.gz
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520intestinal%2520epithelial%2520cell%2520line%253aFHs%252074%2520Int.CNhs11950.10812-111B2.hg38.nobarcode.bam
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 |id=FF:10812-111B2
 |is_a=CL:0002563;;EFO:0002091;;FF:0000210;;FF:0100003
 |is_obsolete=
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 |name=normal intestinal epithelial cell line:FHs 74 Int
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
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 |rna_box=111
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@@ Line 61: / Line 78: @@
 |rna_weight_ug=12.10356
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 |sample_cell_line=FHs 74 Int
@@ Line 82: / Line 100: @@
 |top_motifs=NKX3-1:2.21743245631;GZF1:2.16889734094;ESR1:2.08750006099;UFEwm:1.97796793424;MYBL2:1.68112540702;HOXA9_MEIS1:1.54541544475;HMGA1,2:1.4863308352;ALX4:1.44871893492;NKX2-2,8:1.39788640193;PAX4:1.37236284738;TBX4,5:1.36015334927;EBF1:1.30816916569;FOXL1:1.30661091081;RXR{A,B,G}:1.27066237819;TFAP4:1.26630204427;TFCP2:1.20798317175;TEF:1.09820514386;HMX1:1.0880805689;NFE2L1:1.06746209611;GTF2A1,2:1.06533870135;EVI1:1.0346397435;FOX{I1,J2}:1.00392522525;IRF1,2:0.999783937989;TEAD1:0.942138338047;TP53:0.927817982908;TLX1..3_NFIC{dimer}:0.922068864473;KLF4:0.884107486519;HES1:0.854411157613;NR3C1:0.81812429354;NANOG{mouse}:0.816257042288;ARID5B:0.813164881366;SRF:0.810480977158;TAL1_TCF{3,4,12}:0.761534052245;HSF1,2:0.745306023888;NR5A1,2:0.727943388939;HAND1,2:0.698911678954;LHX3,4:0.695379614329;ZIC1..3:0.64106127498;FOX{F1,F2,J1}:0.62339274205;PAX5:0.619083940261;ZNF423:0.615057367695;TBP:0.601357999292;ZBTB6:0.598245778831;EN1,2:0.592984533;NFIX:0.576416219822;YY1:0.573111033404;PAX1,9:0.542044817193;DBP:0.511705656069;MYFfamily:0.504199074882;MAFB:0.484600300733;IKZF1:0.473168680992;LMO2:0.464113822183;MAZ:0.457278623555;CDC5L:0.438633795081;NR6A1:0.430590212068;GLI1..3:0.430539127589;TFAP2{A,C}:0.413630700014;MTE{core}:0.410941615625;NKX6-1,2:0.39782818872;AIRE:0.393852258387;GTF2I:0.385883251425;ZNF238:0.37677114941;POU6F1:0.347115486782;IRF7:0.306867087913;GFI1B:0.248756922163;HOX{A4,D4}:0.242361618978;HIC1:0.238678812926;SOX5:0.228286668519;TFAP2B:0.212636270681;PRDM1:0.206786233626;NFE2L2:0.203951660546;STAT1,3:0.166236890312;STAT5{A,B}:0.137468129663;CDX1,2,4:0.135510396011;RXRA_VDR{dimer}:0.105410899135;PATZ1:0.103625209875;FOXO1,3,4:0.0970558700949;MTF1:0.0910019341576;SOX17:0.0809829933908;PAX8:0.037860005326;HNF1A:0.0126761155404;FOXN1:0.00938614093196;SPZ1:0.0084702034078;FOXP1:0.00761835309591;XCPE1{core}:-0.00522679493305;ATF6:-0.00771871465851;FOXD3:-0.026237535162;FOX{D1,D2}:-0.0285147752616;IKZF2:-0.0373445802408;SP1:-0.0476704724614;NFATC1..3:-0.0897079009097;TOPORS:-0.096186160412;XBP1:-0.0994408280516;HNF4A_NR2F1,2:-0.110025264357;REST:-0.114027378061;GCM1,2:-0.133849541136;STAT2,4,6:-0.137922412299;MEF2{A,B,C,D}:-0.142124851186;NKX3-2:-0.166537108479;RREB1:-0.176082582589;AHR_ARNT_ARNT2:-0.189688843042;MZF1:-0.207551315498;NFE2:-0.220019527867;GFI1:-0.222222479394;MED-1{core}:-0.225334408007;OCT4_SOX2{dimer}:-0.228630665467;BACH2:-0.23793050445;PAX6:-0.238977548748;T:-0.252758947171;NHLH1,2:-0.272336053338;SOX2:-0.28797378728;HLF:-0.296594807904;GATA4:-0.298885245081;PPARG:-0.311166989297;NFKB1_REL_RELA:-0.312303452317;PAX3,7:-0.312584161488;TFDP1:-0.314077950858;CEBPA,B_DDIT3:-0.320730456878;ONECUT1,2:-0.323504260565;ZFP161:-0.326211685611;HIF1A:-0.326702497158;BPTF:-0.335330280179;ZNF143:-0.364143075291;FOXA2:-0.368838247134;ELK1,4_GABP{A,B1}:-0.381643917397;AR:-0.391543182062;MYB:-0.395296142422;FOS_FOS{B,L1}_JUN{B,D}:-0.40590954953;ZBTB16:-0.407135544179;E2F1..5:-0.411896026942;HOX{A5,B5}:-0.430282082453;RFX1:-0.440227681323;MYOD1:-0.442527726085;SPIB:-0.443274247549;LEF1_TCF7_TCF7L1,2:-0.445661182767;POU5F1:-0.451868267123;PBX1:-0.462110956556;FOSL2:-0.463798133832;TGIF1:-0.495404607606;ZNF148:-0.498425075656;SMAD1..7,9:-0.50661862264;PITX1..3:-0.51494934882;ZNF384:-0.534750187303;POU1F1:-0.543108053636;FOXQ1:-0.557887517323;PAX2:-0.563367521105;DMAP1_NCOR{1,2}_SMARC:-0.56823546855;NR1H4:-0.570158347448;EGR1..3:-0.593688893617;RORA:-0.595385649217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.604488229963;HOX{A6,A7,B6,B7}:-0.62167731845;ETS1,2:-0.636242685698;SNAI1..3:-0.642749647709;RUNX1..3:-0.646249824721;ESRRA:-0.664415175225;ATF2:-0.674090955019;PRRX1,2:-0.689470746711;NRF1:-0.702946400131;POU2F1..3:-0.707972538826;SPI1:-0.755548495014;bHLH_family:-0.760974628903;FOXM1:-0.76271559839;RFX2..5_RFXANK_RFXAP:-0.772735316596;CUX2:-0.817524464749;NKX2-1,4:-0.822037083432;ELF1,2,4:-0.873662467265;JUN:-0.878730050905;ATF4:-0.888200701433;NFIL3:-0.913043420836;CREB1:-0.934611871406;TLX2:-0.93545654137;FOXP3:-0.939308782898;SREBF1,2:-0.941929889679;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.978270752294;ZEB1:-0.980488957966;ATF5_CREB3:-1.00409389707;VSX1,2:-1.01439514377;PDX1:-1.02446430128;NFY{A,B,C}:-1.03197524901;SOX{8,9,10}:-1.05132144775;RBPJ:-1.05312261561;NKX2-3_NKX2-5:-1.07242433485;HBP1_HMGB_SSRP1_UBTF:-1.09125845337;GATA6:-1.11212491769;ADNP_IRX_SIX_ZHX:-1.19490233651;POU3F1..4:-1.29766967558;CRX:-1.35183092568;EP300:-1.40631718988;ALX1:-1.45861270008;BREu{core}:-1.61006943543;NANOG:-2.56805540244
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10812-111B2;search_select_hide=table117:FF:10812-111B2
 }}

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FF:10812-111B2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:06, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0