FF:10818-111B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004811 | ||
| | |accession_numbers=CAGE;DRX007905;DRR008777;DRZ000202;DRZ001587;DRZ011552;DRZ012937 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0100599 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100224,FF:0101120 | |fonse_cell_line=FF:0100224,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100224,FF:0101120 | |fonse_cell_line_closure=FF:0100224,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep1.CNhs12328.10818-111B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10818-111B8 | |id=FF:10818-111B8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100599 | ||
|is_obsolete= | |||
|library_id=CNhs12328 | |||
|library_id_phase_based=2:CNhs12328 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10818 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10818 | |||
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1 | |name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12328,LSID913,release011,COMPLETED | |profile_hcage=CNhs12328,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0967721310792126,0,-0.106719278609318,0.351757982409057,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0611817363290387,0,0,0,0,0,0.191050610687238,0,0,0.138098162942085,0,0,0,0,0,0,0,0,0,0,0.0921412740193889,0,-0.0927110613661103,0.212258326954079,0,0,0,0,0,0,0,0.120021554473153,0,0,0,0,0,0,0.0635458990071735,0.429798485761943,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.0329341673988529,0,0,0,0,0,0,0,0,0,0.179430419122328,0,0,0,0,0.0144514081822198,0.131322167521922,0,0,0,0.278937991267287,-0.194730318996442,0.0460706370096945,0,0,0,0.0462012243482806,0.220628919779333,0,0,0,0.0329341673988529,0,0,0.0635458990071735,0,0,0,0.507351624760996,0,0,0,0,0,0,0.0709267319415992,0.436676180613302,0,0,-0.0155664369838105,-0.178847097096071,0,0,0.118969586029405,0,0.0164670836994265,0 | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=47.0895 | |rna_weight_ug=47.0895 | ||
|sample_age=15 | |sample_age=15 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=HepG2 | |sample_cell_line=HepG2 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.11655878791254e-265!GO:0043231;intracellular membrane-bound organelle;2.44976091385251e-226!GO:0043227;membrane-bound organelle;2.77265845473857e-226!GO:0043226;organelle;3.38213203490956e-219!GO:0043229;intracellular organelle;8.35522496445101e-219!GO:0005737;cytoplasm;2.62386552364084e-192!GO:0044422;organelle part;8.31879031066907e-162!GO:0044446;intracellular organelle part;2.98076405183188e-160!GO:0044444;cytoplasmic part;2.7308891489009e-144!GO:0044237;cellular metabolic process;1.01598943596189e-117!GO:0044238;primary metabolic process;2.16320139938632e-114!GO:0032991;macromolecular complex;2.06752103347838e-107!GO:0030529;ribonucleoprotein complex;2.44897280105291e-94!GO:0043170;macromolecule metabolic process;1.25892610076162e-91!GO:0043233;organelle lumen;2.47512880288191e-91!GO:0031974;membrane-enclosed lumen;2.47512880288191e-91!GO:0005634;nucleus;1.78330322144329e-90!GO:0005739;mitochondrion;2.13466647548194e-87!GO:0044428;nuclear part;9.17098270336209e-87!GO:0003723;RNA binding;2.05434610218178e-83!GO:0005515;protein binding;7.19677257190772e-59!GO:0006396;RNA processing;2.72342189204417e-58!GO:0044429;mitochondrial part;4.43560196339596e-55!GO:0005840;ribosome;3.45266980728167e-54!GO:0031981;nuclear lumen;8.47039030726299e-54!GO:0043234;protein complex;3.49623404638284e-53!GO:0031090;organelle membrane;7.69133536481676e-52!GO:0006412;translation;2.50575650863706e-51!GO:0009058;biosynthetic process;2.50832238259168e-50!GO:0019538;protein metabolic process;3.54416440080366e-49!GO:0044249;cellular biosynthetic process;1.03272810058907e-47!GO:0031967;organelle envelope;3.71584700096694e-47!GO:0031975;envelope;1.00785290975508e-46!GO:0043283;biopolymer metabolic process;3.65254389360516e-46!GO:0003735;structural constituent of ribosome;3.82526847631055e-45!GO:0016071;mRNA metabolic process;5.34253401439167e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.35029610845295e-44!GO:0044267;cellular protein metabolic process;1.34829506831943e-43!GO:0010467;gene expression;1.5541317280298e-43!GO:0044260;cellular macromolecule metabolic process;1.77160214781556e-43!GO:0009059;macromolecule biosynthetic process;2.79369322937533e-42!GO:0016043;cellular component organization and biogenesis;2.22762528474706e-41!GO:0008380;RNA splicing;9.57255909532474e-41!GO:0015031;protein transport;7.4334386281156e-40!GO:0033279;ribosomal subunit;2.44764805581351e-39!GO:0033036;macromolecule localization;5.17721394791865e-39!GO:0006397;mRNA processing;5.05145545192024e-38!GO:0006259;DNA metabolic process;1.30159050964628e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.33944483349194e-37!GO:0065003;macromolecular complex assembly;3.14203828635907e-36!GO:0005829;cytosol;6.10879754347388e-36!GO:0045184;establishment of protein localization;9.22637018327141e-36!GO:0008104;protein localization;5.27843577738085e-35!GO:0046907;intracellular transport;5.65742098999799e-34!GO:0005654;nucleoplasm;2.04423351149877e-33!GO:0005740;mitochondrial envelope;3.85053983016013e-33!GO:0043228;non-membrane-bound organelle;4.69200594443236e-33!GO:0043232;intracellular non-membrane-bound organelle;4.69200594443236e-33!GO:0019866;organelle inner membrane;1.67407814131461e-32!GO:0022607;cellular component assembly;5.92758428144389e-32!GO:0006996;organelle organization and biogenesis;5.43737194657186e-31!GO:0031966;mitochondrial membrane;7.45614228512469e-31!GO:0003676;nucleic acid binding;1.95273632793045e-30!GO:0007049;cell cycle;4.73964295102821e-30!GO:0005743;mitochondrial inner membrane;2.53272856285581e-29!GO:0005681;spliceosome;8.61263640013143e-29!GO:0006886;intracellular protein transport;1.70764873570892e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.45683227152002e-27!GO:0044451;nucleoplasm part;6.79368879243158e-27!GO:0031980;mitochondrial lumen;1.33947860901442e-26!GO:0005759;mitochondrial matrix;1.33947860901442e-26!GO:0000166;nucleotide binding;1.62308385604154e-24!GO:0000278;mitotic cell cycle;1.90883749041129e-24!GO:0006974;response to DNA damage stimulus;3.48231910660124e-24!GO:0005783;endoplasmic reticulum;1.27206334427286e-23!GO:0044248;cellular catabolic process;4.43982934361397e-23!GO:0022402;cell cycle process;1.82834179725251e-22!GO:0016874;ligase activity;6.06036187752458e-22!GO:0044445;cytosolic part;7.21185228183107e-22!GO:0051649;establishment of cellular localization;9.96365869894448e-22!GO:0051641;cellular localization;1.01707131795007e-21!GO:0006119;oxidative phosphorylation;1.39129006948855e-21!GO:0015935;small ribosomal subunit;1.39129006948855e-21!GO:0006457;protein folding;3.91813715096961e-21!GO:0005694;chromosome;9.23766624037431e-21!GO:0012505;endomembrane system;1.37055679891293e-20!GO:0022618;protein-RNA complex assembly;1.66707181878616e-20!GO:0005730;nucleolus;2.27033027919958e-20!GO:0016070;RNA metabolic process;2.69614127948985e-20!GO:0044455;mitochondrial membrane part;3.26012740689277e-20!GO:0000087;M phase of mitotic cell cycle;8.01135058689913e-20!GO:0007067;mitosis;2.07330777354026e-19!GO:0006281;DNA repair;2.07330777354026e-19!GO:0051186;cofactor metabolic process;2.09454165821838e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.60847276188274e-19!GO:0016462;pyrophosphatase activity;5.9706075116889e-19!GO:0015934;large ribosomal subunit;6.92461984907763e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;7.61503248963823e-19!GO:0044432;endoplasmic reticulum part;8.10625590237716e-19!GO:0044265;cellular macromolecule catabolic process;9.19528688887481e-19!GO:0017111;nucleoside-triphosphatase activity;9.99985564226319e-19!GO:0044427;chromosomal part;1.57884083218626e-18!GO:0051276;chromosome organization and biogenesis;6.2705580322143e-18!GO:0009719;response to endogenous stimulus;7.9747327787383e-18!GO:0022403;cell cycle phase;1.10234932036283e-17!GO:0042254;ribosome biogenesis and assembly;2.42359267464214e-17!GO:0051301;cell division;2.6865686836911e-17!GO:0006260;DNA replication;4.51550088973722e-17!GO:0008135;translation factor activity, nucleic acid binding;5.20736584120722e-17!GO:0006512;ubiquitin cycle;6.67750418346135e-17!GO:0005746;mitochondrial respiratory chain;1.5532887420744e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.88006270254278e-16!GO:0017076;purine nucleotide binding;3.0463695720453e-16!GO:0005761;mitochondrial ribosome;3.24090176034929e-16!GO:0000313;organellar ribosome;3.24090176034929e-16!GO:0043285;biopolymer catabolic process;3.6356611587165e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.02176235130112e-16!GO:0005524;ATP binding;4.43255957490218e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.60701857977601e-16!GO:0016887;ATPase activity;6.11865450794013e-16!GO:0019941;modification-dependent protein catabolic process;6.5725007686265e-16!GO:0043632;modification-dependent macromolecule catabolic process;6.5725007686265e-16!GO:0006732;coenzyme metabolic process;6.5725007686265e-16!GO:0006511;ubiquitin-dependent protein catabolic process;7.92465236033668e-16!GO:0030554;adenyl nucleotide binding;8.22551117610292e-16!GO:0044257;cellular protein catabolic process;8.4068308409457e-16!GO:0032553;ribonucleotide binding;9.04717847042643e-16!GO:0032555;purine ribonucleotide binding;9.04717847042643e-16!GO:0048770;pigment granule;1.02197442594345e-15!GO:0042470;melanosome;1.02197442594345e-15!GO:0042623;ATPase activity, coupled;1.0852440601799e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.30624421129353e-15!GO:0032559;adenyl ribonucleotide binding;1.60264673772369e-15!GO:0000279;M phase;2.16251004070441e-15!GO:0009057;macromolecule catabolic process;2.33584975129331e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.87097583762689e-15!GO:0000375;RNA splicing, via transesterification reactions;3.87097583762689e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.87097583762689e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.74150696708218e-15!GO:0003954;NADH dehydrogenase activity;4.74150696708218e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.74150696708218e-15!GO:0044453;nuclear membrane part;7.07576572774215e-15!GO:0009056;catabolic process;7.68661889239276e-15!GO:0005635;nuclear envelope;2.33434735005456e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.81516475738365e-14!GO:0031965;nuclear membrane;3.00028531399671e-14!GO:0008134;transcription factor binding;3.3231529745891e-14!GO:0051082;unfolded protein binding;5.61032647492583e-14!GO:0006605;protein targeting;5.91999310180479e-14!GO:0005789;endoplasmic reticulum membrane;6.72148829650101e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;8.8160054105878e-14!GO:0004386;helicase activity;1.06894884989062e-13!GO:0006323;DNA packaging;1.60905932204328e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.76411088981896e-13!GO:0042773;ATP synthesis coupled electron transport;2.76411088981896e-13!GO:0016604;nuclear body;3.19506088124552e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.62966959315762e-13!GO:0045271;respiratory chain complex I;5.62966959315762e-13!GO:0005747;mitochondrial respiratory chain complex I;5.62966959315762e-13!GO:0003743;translation initiation factor activity;5.96696005975299e-13!GO:0005643;nuclear pore;6.74179815286245e-13!GO:0006413;translational initiation;7.07213195647281e-13!GO:0006082;organic acid metabolic process;7.60059089651114e-13!GO:0009055;electron carrier activity;8.52815770720151e-13!GO:0019752;carboxylic acid metabolic process;9.11262624162081e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.52080065482688e-12!GO:0048193;Golgi vesicle transport;1.93907469545312e-12!GO:0030163;protein catabolic process;2.06682490771362e-12!GO:0046930;pore complex;2.1131276962793e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.26786224699244e-12!GO:0006399;tRNA metabolic process;4.3387813705903e-12!GO:0050657;nucleic acid transport;4.37194590202777e-12!GO:0051236;establishment of RNA localization;4.37194590202777e-12!GO:0050658;RNA transport;4.37194590202777e-12!GO:0006403;RNA localization;6.93190292247287e-12!GO:0006364;rRNA processing;8.90794947712814e-12!GO:0065002;intracellular protein transport across a membrane;1.53914284115912e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.95637144079707e-11!GO:0016491;oxidoreductase activity;2.26572544207334e-11!GO:0016072;rRNA metabolic process;2.58061283507124e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.08811292294653e-11!GO:0005793;ER-Golgi intermediate compartment;4.08811292294653e-11!GO:0043412;biopolymer modification;4.12913444549115e-11!GO:0008026;ATP-dependent helicase activity;4.47939402524869e-11!GO:0006446;regulation of translational initiation;4.66263715831119e-11!GO:0006461;protein complex assembly;4.80362460981321e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.60827766197751e-11!GO:0051726;regulation of cell cycle;6.89189940741035e-11!GO:0006913;nucleocytoplasmic transport;8.86076577039142e-11!GO:0000074;regulation of progression through cell cycle;1.10634194119154e-10!GO:0000785;chromatin;1.5782722182798e-10!GO:0016607;nuclear speck;1.92878869466586e-10!GO:0051169;nuclear transport;2.47221530899555e-10!GO:0051028;mRNA transport;4.48903977333337e-10!GO:0005794;Golgi apparatus;5.3505084777531e-10!GO:0008565;protein transporter activity;6.77056075703377e-10!GO:0008639;small protein conjugating enzyme activity;1.00232217311948e-09!GO:0006333;chromatin assembly or disassembly;1.07258964461632e-09!GO:0065004;protein-DNA complex assembly;1.25465640318245e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.55712120222624e-09!GO:0004842;ubiquitin-protein ligase activity;1.56753479102345e-09!GO:0016740;transferase activity;1.56753479102345e-09!GO:0016192;vesicle-mediated transport;1.61331179052337e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.30563077149098e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.30563077149098e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.30563077149098e-09!GO:0019787;small conjugating protein ligase activity;2.41120254087786e-09!GO:0006464;protein modification process;2.62407278739415e-09!GO:0006366;transcription from RNA polymerase II promoter;2.86171921083712e-09!GO:0006915;apoptosis;3.17626338167235e-09!GO:0012501;programmed cell death;3.2224689405815e-09!GO:0009259;ribonucleotide metabolic process;4.55212359494096e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.73588106668308e-09!GO:0016568;chromatin modification;4.79972325107342e-09!GO:0003712;transcription cofactor activity;4.81551708459656e-09!GO:0006163;purine nucleotide metabolic process;5.38659708782256e-09!GO:0043038;amino acid activation;7.30716444042659e-09!GO:0006418;tRNA aminoacylation for protein translation;7.30716444042659e-09!GO:0043039;tRNA aminoacylation;7.30716444042659e-09!GO:0016779;nucleotidyltransferase activity;1.15791352953357e-08!GO:0016881;acid-amino acid ligase activity;2.10619912207347e-08!GO:0008219;cell death;2.14087289847416e-08!GO:0016265;death;2.14087289847416e-08!GO:0006091;generation of precursor metabolites and energy;2.42744238015745e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.53067126075589e-08!GO:0045333;cellular respiration;2.79297231132683e-08!GO:0006261;DNA-dependent DNA replication;2.79706661278305e-08!GO:0005667;transcription factor complex;2.85800385769735e-08!GO:0051188;cofactor biosynthetic process;2.85951789985021e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.02490622519283e-08!GO:0016787;hydrolase activity;3.12202671273557e-08!GO:0009060;aerobic respiration;3.28513197097337e-08!GO:0006752;group transfer coenzyme metabolic process;3.54552045536817e-08!GO:0006164;purine nucleotide biosynthetic process;3.55253481469946e-08!GO:0032446;protein modification by small protein conjugation;4.10577470851792e-08!GO:0009150;purine ribonucleotide metabolic process;4.63736360527412e-08!GO:0009260;ribonucleotide biosynthetic process;6.30586913311117e-08!GO:0017038;protein import;6.58458892867026e-08!GO:0006520;amino acid metabolic process;7.85787895024326e-08!GO:0043687;post-translational protein modification;7.90404725871944e-08!GO:0016567;protein ubiquitination;8.14639287636443e-08!GO:0051187;cofactor catabolic process;8.86231496563452e-08!GO:0015986;ATP synthesis coupled proton transport;1.08452783694509e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.08452783694509e-07!GO:0005819;spindle;1.2329600293284e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.25258586192491e-07!GO:0043566;structure-specific DNA binding;1.79692889895198e-07!GO:0000245;spliceosome assembly;1.82158856111257e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.17314427818701e-07!GO:0000775;chromosome, pericentric region;3.26287783935949e-07!GO:0044255;cellular lipid metabolic process;3.8693382475342e-07!GO:0003697;single-stranded DNA binding;4.03775756477471e-07!GO:0009108;coenzyme biosynthetic process;4.0459202439421e-07!GO:0007005;mitochondrion organization and biogenesis;4.53207665830442e-07!GO:0006099;tricarboxylic acid cycle;4.53207665830442e-07!GO:0046356;acetyl-CoA catabolic process;4.53207665830442e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.53207665830442e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.05888463317308e-07!GO:0006950;response to stress;5.08008948383284e-07!GO:0019829;cation-transporting ATPase activity;5.24299989925219e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.44653518096425e-07!GO:0009141;nucleoside triphosphate metabolic process;5.69086980555584e-07!GO:0006334;nucleosome assembly;5.76292696142291e-07!GO:0046034;ATP metabolic process;5.91308003304185e-07!GO:0051329;interphase of mitotic cell cycle;6.32872530750995e-07!GO:0006084;acetyl-CoA metabolic process;6.38650401638018e-07!GO:0016853;isomerase activity;6.50069749056519e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.50432050332766e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.50432050332766e-07!GO:0045259;proton-transporting ATP synthase complex;8.16437320284235e-07!GO:0005788;endoplasmic reticulum lumen;1.02025845094958e-06!GO:0009308;amine metabolic process;1.0857507017449e-06!GO:0005768;endosome;1.09334734026376e-06!GO:0008094;DNA-dependent ATPase activity;1.12927125017632e-06!GO:0006754;ATP biosynthetic process;1.16167929802503e-06!GO:0006753;nucleoside phosphate metabolic process;1.16167929802503e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.17872614293276e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.17872614293276e-06!GO:0006519;amino acid and derivative metabolic process;1.28805116961778e-06!GO:0007051;spindle organization and biogenesis;1.34079196240141e-06!GO:0031497;chromatin assembly;1.36567805464763e-06!GO:0003899;DNA-directed RNA polymerase activity;1.44094436123343e-06!GO:0006807;nitrogen compound metabolic process;1.45798277008362e-06!GO:0015630;microtubule cytoskeleton;1.62814960827704e-06!GO:0042981;regulation of apoptosis;1.83405832166057e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.99410139373398e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.99410139373398e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.04328276277736e-06!GO:0043623;cellular protein complex assembly;2.19850832625306e-06!GO:0009109;coenzyme catabolic process;2.35109628991503e-06!GO:0000151;ubiquitin ligase complex;2.38565428320845e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.64394242714171e-06!GO:0043067;regulation of programmed cell death;2.7438583318263e-06!GO:0005813;centrosome;2.83019274722587e-06!GO:0003724;RNA helicase activity;2.88051311501218e-06!GO:0005657;replication fork;3.41133905809323e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.50324737029254e-06!GO:0005815;microtubule organizing center;3.53004029413309e-06!GO:0016741;transferase activity, transferring one-carbon groups;3.91313972472554e-06!GO:0008168;methyltransferase activity;4.33329157208254e-06!GO:0048037;cofactor binding;5.34336570917554e-06!GO:0005762;mitochondrial large ribosomal subunit;5.83781317526887e-06!GO:0000315;organellar large ribosomal subunit;5.83781317526887e-06!GO:0003713;transcription coactivator activity;5.88668820717829e-06!GO:0051246;regulation of protein metabolic process;5.88877010380969e-06!GO:0030120;vesicle coat;6.0301739264333e-06!GO:0030662;coated vesicle membrane;6.0301739264333e-06!GO:0051168;nuclear export;6.8060449562716e-06!GO:0000075;cell cycle checkpoint;7.63475056080465e-06!GO:0006613;cotranslational protein targeting to membrane;7.88536338941253e-06!GO:0051325;interphase;7.89835326205273e-06!GO:0016125;sterol metabolic process;8.33965279476153e-06!GO:0016363;nuclear matrix;9.19255868396904e-06!GO:0048475;coated membrane;9.72943435156765e-06!GO:0030117;membrane coat;9.72943435156765e-06!GO:0004298;threonine endopeptidase activity;1.5809381564469e-05!GO:0044452;nucleolar part;1.60424072458554e-05!GO:0043069;negative regulation of programmed cell death;1.74758222464781e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.82835702110744e-05!GO:0009117;nucleotide metabolic process;1.97079268158157e-05!GO:0000314;organellar small ribosomal subunit;1.97079268158157e-05!GO:0005763;mitochondrial small ribosomal subunit;1.97079268158157e-05!GO:0016563;transcription activator activity;1.99777484492463e-05!GO:0043066;negative regulation of apoptosis;2.0363279833088e-05!GO:0044262;cellular carbohydrate metabolic process;2.25193672275617e-05!GO:0006629;lipid metabolic process;2.40280470753402e-05!GO:0006066;alcohol metabolic process;2.55246630943947e-05!GO:0016859;cis-trans isomerase activity;2.85493955665607e-05!GO:0006401;RNA catabolic process;2.96980428823372e-05!GO:0046483;heterocycle metabolic process;3.78851405127529e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.79319824993467e-05!GO:0045454;cell redox homeostasis;3.79632694868482e-05!GO:0006302;double-strand break repair;3.84186178076468e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;4.19606033242386e-05!GO:0005770;late endosome;4.55494380708511e-05!GO:0005798;Golgi-associated vesicle;4.68466735249714e-05!GO:0051170;nuclear import;4.97260664727348e-05!GO:0003690;double-stranded DNA binding;5.07302884306689e-05!GO:0016126;sterol biosynthetic process;5.13361609591673e-05!GO:0006402;mRNA catabolic process;5.3631720372946e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.39976108933461e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.70025753351144e-05!GO:0006606;protein import into nucleus;5.80862164454005e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.35715078247024e-05!GO:0051427;hormone receptor binding;6.4006123302044e-05!GO:0008203;cholesterol metabolic process;7.38169082935947e-05!GO:0031324;negative regulation of cellular metabolic process;7.41167104440251e-05!GO:0006695;cholesterol biosynthetic process;8.10049275204876e-05!GO:0044440;endosomal part;8.10049275204876e-05!GO:0010008;endosome membrane;8.10049275204876e-05!GO:0031988;membrane-bound vesicle;8.51048842129382e-05!GO:0019843;rRNA binding;9.45392554613795e-05!GO:0008610;lipid biosynthetic process;9.49116423892342e-05!GO:0030880;RNA polymerase complex;9.64906534073529e-05!GO:0016564;transcription repressor activity;0.000101445247361738!GO:0016023;cytoplasmic membrane-bound vesicle;0.00010532000204969!GO:0043021;ribonucleoprotein binding;0.000118055242549902!GO:0045786;negative regulation of progression through cell cycle;0.000126585113371606!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00012678343240514!GO:0015399;primary active transmembrane transporter activity;0.00012678343240514!GO:0050662;coenzyme binding;0.00012891699427777!GO:0035257;nuclear hormone receptor binding;0.000133004232556549!GO:0008654;phospholipid biosynthetic process;0.000133004232556549!GO:0030867;rough endoplasmic reticulum membrane;0.000144164581179296!GO:0008186;RNA-dependent ATPase activity;0.000150796579681777!GO:0008033;tRNA processing;0.00015541133000454!GO:0051052;regulation of DNA metabolic process;0.000166816873974522!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00018891602860805!GO:0042802;identical protein binding;0.000193306794088765!GO:0043681;protein import into mitochondrion;0.000200907680273397!GO:0000776;kinetochore;0.000201327794046505!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00020252370175183!GO:0019867;outer membrane;0.000213953423153638!GO:0031968;organelle outer membrane;0.000214805069862146!GO:0003729;mRNA binding;0.000226124513853502!GO:0009892;negative regulation of metabolic process;0.000227697845933324!GO:0003684;damaged DNA binding;0.00023886033621794!GO:0008652;amino acid biosynthetic process;0.000243965483855746!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000243965483855746!GO:0000428;DNA-directed RNA polymerase complex;0.000243965483855746!GO:0007059;chromosome segregation;0.00025199991029434!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000269616416632711!GO:0044431;Golgi apparatus part;0.000280623335912387!GO:0050794;regulation of cellular process;0.000285970042272095!GO:0019899;enzyme binding;0.00028684151799105!GO:0007088;regulation of mitosis;0.000315029137948913!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000349608351867961!GO:0005791;rough endoplasmic reticulum;0.000352433111683133!GO:0006352;transcription initiation;0.000379945022180553!GO:0042157;lipoprotein metabolic process;0.00038589264708511!GO:0006626;protein targeting to mitochondrion;0.000409350358653681!GO:0003682;chromatin binding;0.000418880381389052!GO:0005741;mitochondrial outer membrane;0.000423137326438042!GO:0004004;ATP-dependent RNA helicase activity;0.000427907228382884!GO:0006612;protein targeting to membrane;0.000466032479273306!GO:0005048;signal sequence binding;0.000489814607604073!GO:0022890;inorganic cation transmembrane transporter activity;0.000502221040717029!GO:0006414;translational elongation;0.000523069643380712!GO:0006338;chromatin remodeling;0.000542426735759941!GO:0006916;anti-apoptosis;0.000547937477031543!GO:0000786;nucleosome;0.000558540606997052!GO:0032508;DNA duplex unwinding;0.000587517687571212!GO:0032392;DNA geometric change;0.000587517687571212!GO:0000082;G1/S transition of mitotic cell cycle;0.00060915208133101!GO:0006839;mitochondrial transport;0.000620538057742369!GO:0003714;transcription corepressor activity;0.000680690714741469!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000712739945636985!GO:0006793;phosphorus metabolic process;0.000720256507304017!GO:0006796;phosphate metabolic process;0.000720256507304017!GO:0031982;vesicle;0.000737264916114517!GO:0030134;ER to Golgi transport vesicle;0.000780007227322261!GO:0006383;transcription from RNA polymerase III promoter;0.000801112321844779!GO:0006118;electron transport;0.000804887694146186!GO:0019222;regulation of metabolic process;0.000818839704437567!GO:0000059;protein import into nucleus, docking;0.000833164182386429!GO:0032787;monocarboxylic acid metabolic process;0.000868282488577627!GO:0005684;U2-dependent spliceosome;0.000885175707006934!GO:0030521;androgen receptor signaling pathway;0.000885175707006934!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000885175707006934!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000916811888281345!GO:0051920;peroxiredoxin activity;0.000966395825456788!GO:0031410;cytoplasmic vesicle;0.000987228135118545!GO:0043284;biopolymer biosynthetic process;0.0011257183959211!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00116924474360464!GO:0006595;polyamine metabolic process;0.00117436324303898!GO:0051252;regulation of RNA metabolic process;0.00117797508402615!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00127779942948903!GO:0048500;signal recognition particle;0.0012964227918787!GO:0006268;DNA unwinding during replication;0.00129991519497594!GO:0048523;negative regulation of cellular process;0.00130231174150865!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00130257380648126!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00130257380648126!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00130257380648126!GO:0043492;ATPase activity, coupled to movement of substances;0.00135956821551092!GO:0033116;ER-Golgi intermediate compartment membrane;0.00137471453311642!GO:0007006;mitochondrial membrane organization and biogenesis;0.001377267910183!GO:0003746;translation elongation factor activity;0.00149232297393234!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00155866676656905!GO:0016408;C-acyltransferase activity;0.00157365781424202!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00161474274410458!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00161883926876214!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00161883926876214!GO:0051789;response to protein stimulus;0.00164623659167751!GO:0006986;response to unfolded protein;0.00164623659167751!GO:0004527;exonuclease activity;0.00166775415670251!GO:0042393;histone binding;0.00168692148482532!GO:0051659;maintenance of mitochondrion localization;0.00170128011756971!GO:0051657;maintenance of organelle localization;0.00170128011756971!GO:0000096;sulfur amino acid metabolic process;0.00171554377612428!GO:0008139;nuclear localization sequence binding;0.00174029787145261!GO:0007052;mitotic spindle organization and biogenesis;0.00174585980747104!GO:0007093;mitotic cell cycle checkpoint;0.00177790297881954!GO:0005885;Arp2/3 protein complex;0.0017835432310753!GO:0016251;general RNA polymerase II transcription factor activity;0.00178551585766899!GO:0031072;heat shock protein binding;0.00178551585766899!GO:0048471;perinuclear region of cytoplasm;0.00185106237792777!GO:0005975;carbohydrate metabolic process;0.00191024871796046!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00200878951259518!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00202335740002277!GO:0005773;vacuole;0.00209027465751963!GO:0006405;RNA export from nucleus;0.00209284859897655!GO:0042158;lipoprotein biosynthetic process;0.00214049110696987!GO:0030127;COPII vesicle coat;0.00219486661818424!GO:0012507;ER to Golgi transport vesicle membrane;0.00219486661818424!GO:0016310;phosphorylation;0.00224850891232516!GO:0030658;transport vesicle membrane;0.00228037947343796!GO:0019439;aromatic compound catabolic process;0.00230144859674243!GO:0006270;DNA replication initiation;0.0023403439556748!GO:0005637;nuclear inner membrane;0.00234417517924745!GO:0005769;early endosome;0.00234417517924745!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00234786822352198!GO:0016407;acetyltransferase activity;0.00238703418493199!GO:0006611;protein export from nucleus;0.00239629092801073!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.00245924600064714!GO:0016746;transferase activity, transferring acyl groups;0.00248549882541497!GO:0003678;DNA helicase activity;0.00251991905720646!GO:0003711;transcription elongation regulator activity;0.00260475796021128!GO:0004518;nuclease activity;0.00274209745343161!GO:0005876;spindle microtubule;0.00280084475338835!GO:0008312;7S RNA binding;0.00283253894502408!GO:0009303;rRNA transcription;0.00286364034366484!GO:0030133;transport vesicle;0.00286952914956123!GO:0043488;regulation of mRNA stability;0.00290800011912441!GO:0043487;regulation of RNA stability;0.00290800011912441!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00297895387519923!GO:0006818;hydrogen transport;0.00297900476158651!GO:0005758;mitochondrial intermembrane space;0.00310424341293975!GO:0006979;response to oxidative stress;0.00310588533511961!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00313735241142592!GO:0009165;nucleotide biosynthetic process;0.00313925232108922!GO:0009064;glutamine family amino acid metabolic process;0.00314794538388706!GO:0051087;chaperone binding;0.0031783656894633!GO:0035258;steroid hormone receptor binding;0.0034071994561773!GO:0000049;tRNA binding;0.00346283774359671!GO:0046474;glycerophospholipid biosynthetic process;0.003561818582236!GO:0000922;spindle pole;0.003561818582236!GO:0009063;amino acid catabolic process;0.003561818582236!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00380803693555372!GO:0015002;heme-copper terminal oxidase activity;0.00380803693555372!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00380803693555372!GO:0004129;cytochrome-c oxidase activity;0.00380803693555372!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0038755494769857!GO:0045047;protein targeting to ER;0.0038755494769857!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00392834333057355!GO:0015992;proton transport;0.00397800321018248!GO:0008629;induction of apoptosis by intracellular signals;0.00402840858349058!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00412355682309788!GO:0031252;leading edge;0.00416815016900267!GO:0008415;acyltransferase activity;0.00420700197778565!GO:0006749;glutathione metabolic process;0.00455872646045446!GO:0005777;peroxisome;0.00458335827246581!GO:0042579;microbody;0.00458335827246581!GO:0007040;lysosome organization and biogenesis;0.00461705465304365!GO:0047485;protein N-terminus binding;0.00463275510288993!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00466252280005524!GO:0009451;RNA modification;0.00470697041442613!GO:0008022;protein C-terminus binding;0.00471696482514406!GO:0016197;endosome transport;0.00471968258236262!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00480593582015299!GO:0042770;DNA damage response, signal transduction;0.00483031660404848!GO:0000819;sister chromatid segregation;0.00483171495709325!GO:0000323;lytic vacuole;0.00485777290680662!GO:0005764;lysosome;0.00485777290680662!GO:0008632;apoptotic program;0.00490628633910627!GO:0030660;Golgi-associated vesicle membrane;0.00503901478529752!GO:0006596;polyamine biosynthetic process;0.00514544306022688!GO:0005996;monosaccharide metabolic process;0.00525149783726588!GO:0006284;base-excision repair;0.00536938172526853!GO:0006275;regulation of DNA replication;0.0053754584801056!GO:0006650;glycerophospholipid metabolic process;0.00557884092770736!GO:0008202;steroid metabolic process;0.00560856773922049!GO:0003702;RNA polymerase II transcription factor activity;0.00564024286738567!GO:0031647;regulation of protein stability;0.00584717292429417!GO:0031124;mRNA 3'-end processing;0.00596320499995889!GO:0000070;mitotic sister chromatid segregation;0.00596320499995889!GO:0031970;organelle envelope lumen;0.00596320499995889!GO:0006497;protein amino acid lipidation;0.00601310736223292!GO:0048519;negative regulation of biological process;0.00619543977855753!GO:0006541;glutamine metabolic process;0.00622979321655753!GO:0016481;negative regulation of transcription;0.00629024366751919!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00636131414118922!GO:0000139;Golgi membrane;0.00636878271411454!GO:0009112;nucleobase metabolic process;0.00670211943896182!GO:0065009;regulation of a molecular function;0.00670456766759989!GO:0006144;purine base metabolic process;0.00696206981657011!GO:0019318;hexose metabolic process;0.00719225020120103!GO:0006891;intra-Golgi vesicle-mediated transport;0.00732939949011372!GO:0006310;DNA recombination;0.00777575816811347!GO:0004532;exoribonuclease activity;0.00789645237765632!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00789645237765632!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00797714970220765!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0080540904006807!GO:0030518;steroid hormone receptor signaling pathway;0.0089417324080056!GO:0044270;nitrogen compound catabolic process;0.00896435743096803!GO:0051716;cellular response to stimulus;0.00911542778925888!GO:0043022;ribosome binding;0.00944930809000182!GO:0005832;chaperonin-containing T-complex;0.00972849421882327!GO:0033673;negative regulation of kinase activity;0.0098256416318548!GO:0006469;negative regulation of protein kinase activity;0.0098256416318548!GO:0006354;RNA elongation;0.00984547835454034!GO:0046983;protein dimerization activity;0.00987278217820691!GO:0008180;signalosome;0.00990200149556685!GO:0031323;regulation of cellular metabolic process;0.00990200149556685!GO:0000725;recombinational repair;0.0102830130877535!GO:0000724;double-strand break repair via homologous recombination;0.0102830130877535!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0104225582968542!GO:0006790;sulfur metabolic process;0.0104878019886982!GO:0006642;triacylglycerol mobilization;0.010571060924705!GO:0008320;protein transmembrane transporter activity;0.010630363111607!GO:0006289;nucleotide-excision repair;0.0107366332404343!GO:0003756;protein disulfide isomerase activity;0.0109226866984998!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0109226866984998!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0109226866984998!GO:0007017;microtubule-based process;0.010932602369471!GO:0043596;nuclear replication fork;0.0111467330210654!GO:0016272;prefoldin complex;0.0112569752418512!GO:0006778;porphyrin metabolic process;0.0112569752418512!GO:0033013;tetrapyrrole metabolic process;0.0112569752418512!GO:0000178;exosome (RNase complex);0.0112569752418512!GO:0030663;COPI coated vesicle membrane;0.0112967689067545!GO:0030126;COPI vesicle coat;0.0112967689067545!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0116539442248509!GO:0001889;liver development;0.0117118482167372!GO:0043407;negative regulation of MAP kinase activity;0.0120863518980559!GO:0051539;4 iron, 4 sulfur cluster binding;0.0121323028515924!GO:0004300;enoyl-CoA hydratase activity;0.0123815705653557!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0123815705653557!GO:0046489;phosphoinositide biosynthetic process;0.0123863079154511!GO:0050750;low-density lipoprotein receptor binding;0.0126520288132155!GO:0009310;amine catabolic process;0.012755548774037!GO:0005525;GTP binding;0.012856270282319!GO:0008538;proteasome activator activity;0.0129226867020656!GO:0051287;NAD binding;0.013075821154964!GO:0007033;vacuole organization and biogenesis;0.0132994194039143!GO:0050789;regulation of biological process;0.0133340555498256!GO:0051348;negative regulation of transferase activity;0.0134644561807101!GO:0003924;GTPase activity;0.0134904356038341!GO:0009066;aspartate family amino acid metabolic process;0.0140866744605915!GO:0004576;oligosaccharyl transferase activity;0.0143291269002897!GO:0050681;androgen receptor binding;0.0144503049566006!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0154800119788551!GO:0006378;mRNA polyadenylation;0.0156292454617198!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0161247585871371!GO:0051101;regulation of DNA binding;0.0162218760594909!GO:0006506;GPI anchor biosynthetic process;0.0162952559619651!GO:0006631;fatty acid metabolic process;0.0169227825360016!GO:0050748;negative regulation of lipoprotein metabolic process;0.016962318086155!GO:0032200;telomere organization and biogenesis;0.0176146565152446!GO:0000723;telomere maintenance;0.0176146565152446!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0179450826529155!GO:0031570;DNA integrity checkpoint;0.0179518192842945!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0181820149179226!GO:0000287;magnesium ion binding;0.0182486671883929!GO:0000097;sulfur amino acid biosynthetic process;0.0186864910656972!GO:0043624;cellular protein complex disassembly;0.0186864910656972!GO:0004540;ribonuclease activity;0.0189838152281121!GO:0000209;protein polyubiquitination;0.0189838152281121!GO:0006505;GPI anchor metabolic process;0.0191467038592745!GO:0000792;heterochromatin;0.0192213263181759!GO:0051540;metal cluster binding;0.0197139911620544!GO:0051536;iron-sulfur cluster binding;0.0197139911620544!GO:0004177;aminopeptidase activity;0.0199589324939985!GO:0006740;NADPH regeneration;0.0199745146583097!GO:0006098;pentose-phosphate shunt;0.0199745146583097!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0202546826798182!GO:0031123;RNA 3'-end processing;0.020542189130043!GO:0004722;protein serine/threonine phosphatase activity;0.0212364947701618!GO:0030176;integral to endoplasmic reticulum membrane;0.0219717163367893!GO:0000339;RNA cap binding;0.0221853724599278!GO:0006400;tRNA modification;0.0222184636890442!GO:0005663;DNA replication factor C complex;0.0224086025617675!GO:0005774;vacuolar membrane;0.0226760632878649!GO:0015682;ferric iron transport;0.0230032241248862!GO:0015091;ferric iron transmembrane transporter activity;0.0230032241248862!GO:0031643;positive regulation of myelination;0.0230032241248862!GO:0005874;microtubule;0.023060661002562!GO:0031625;ubiquitin protein ligase binding;0.0232617379262757!GO:0015631;tubulin binding;0.0232617379262757!GO:0009074;aromatic amino acid family catabolic process;0.0233718664401034!GO:0005669;transcription factor TFIID complex;0.0233718664401034!GO:0008286;insulin receptor signaling pathway;0.0234472259873003!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0235925549694081!GO:0006417;regulation of translation;0.02396285556837!GO:0043601;nuclear replisome;0.0242814738044142!GO:0030894;replisome;0.0242814738044142!GO:0005905;coated pit;0.0242945422623068!GO:0006376;mRNA splice site selection;0.0243136891662519!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0243136891662519!GO:0008361;regulation of cell size;0.0245147154179444!GO:0042168;heme metabolic process;0.0246626925407176!GO:0000228;nuclear chromosome;0.0249376899728589!GO:0006301;postreplication repair;0.0250782104340977!GO:0004003;ATP-dependent DNA helicase activity;0.0254665150363959!GO:0031326;regulation of cellular biosynthetic process;0.025631787317529!GO:0000152;nuclear ubiquitin ligase complex;0.0257541672034102!GO:0008250;oligosaccharyl transferase complex;0.0261462220911504!GO:0006518;peptide metabolic process;0.0264039034195863!GO:0006720;isoprenoid metabolic process;0.026655491728632!GO:0030137;COPI-coated vesicle;0.0267882578457999!GO:0045045;secretory pathway;0.0268607366924523!GO:0007021;tubulin folding;0.0271910035512443!GO:0005732;small nucleolar ribonucleoprotein complex;0.0274433517956768!GO:0016835;carbon-oxygen lyase activity;0.0279278387583908!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0280348144502865!GO:0005652;nuclear lamina;0.0280999461418367!GO:0006730;one-carbon compound metabolic process;0.0280999461418367!GO:0045893;positive regulation of transcription, DNA-dependent;0.0281362958203241!GO:0000781;chromosome, telomeric region;0.0282576391167234!GO:0001558;regulation of cell growth;0.0287787431611832!GO:0004680;casein kinase activity;0.0294343769237606!GO:0031902;late endosome membrane;0.0296052853054625!GO:0008536;Ran GTPase binding;0.029614801763382!GO:0044272;sulfur compound biosynthetic process;0.0301305941261284!GO:0009116;nucleoside metabolic process;0.0303082868637824!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0308459359546966!GO:0006379;mRNA cleavage;0.0312523797255189!GO:0040029;regulation of gene expression, epigenetic;0.0315421722325209!GO:0006081;aldehyde metabolic process;0.031590587963779!GO:0016044;membrane organization and biogenesis;0.0320401840225925!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0320401840225925!GO:0030384;phosphoinositide metabolic process;0.0320401840225925!GO:0051053;negative regulation of DNA metabolic process;0.0324370671492031!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.032654804322046!GO:0005784;translocon complex;0.0327732678545278!GO:0030118;clathrin coat;0.0336968445863046!GO:0044438;microbody part;0.0337850182871985!GO:0044439;peroxisomal part;0.0337850182871985!GO:0009225;nucleotide-sugar metabolic process;0.0338890763058884!GO:0008299;isoprenoid biosynthetic process;0.0347519697601521!GO:0043189;H4/H2A histone acetyltransferase complex;0.035367098284026!GO:0032984;macromolecular complex disassembly;0.0353843137452052!GO:0001887;selenium metabolic process;0.0353843137452052!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0357454767592933!GO:0008537;proteasome activator complex;0.0363025527956861!GO:0006350;transcription;0.0365280577149276!GO:0008216;spermidine metabolic process;0.0369810766804638!GO:0030261;chromosome condensation;0.0369810766804638!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0375216832500117!GO:0009067;aspartate family amino acid biosynthetic process;0.0380700604570917!GO:0007346;regulation of progression through mitotic cell cycle;0.0380700604570917!GO:0042026;protein refolding;0.0380858002790396!GO:0016049;cell growth;0.038291197047685!GO:0030522;intracellular receptor-mediated signaling pathway;0.0384119370123066!GO:0016790;thiolester hydrolase activity;0.0384147489764655!GO:0007004;telomere maintenance via telomerase;0.0384769971833644!GO:0017166;vinculin binding;0.038566064779818!GO:0030027;lamellipodium;0.0392018231366807!GO:0030036;actin cytoskeleton organization and biogenesis;0.0392769998385402!GO:0007034;vacuolar transport;0.0398206239111459!GO:0032259;methylation;0.0398383303733848!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0398948634714749!GO:0045039;protein import into mitochondrial inner membrane;0.0398948634714749!GO:0006006;glucose metabolic process;0.0403780844905801!GO:0031371;ubiquitin conjugating enzyme complex;0.0403780844905801!GO:0008295;spermidine biosynthetic process;0.0403780844905801!GO:0031406;carboxylic acid binding;0.0403780844905801!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0403780844905801!GO:0022406;membrane docking;0.0405153401955174!GO:0048278;vesicle docking;0.0405153401955174!GO:0019438;aromatic compound biosynthetic process;0.0405173138577619!GO:0008143;poly(A) binding;0.0408014059381429!GO:0004873;asialoglycoprotein receptor activity;0.0410122052121741!GO:0051338;regulation of transferase activity;0.0411568455291059!GO:0051098;regulation of binding;0.0418168440088008!GO:0004448;isocitrate dehydrogenase activity;0.041890203667165!GO:0006907;pinocytosis;0.0421239048223983!GO:0000175;3'-5'-exoribonuclease activity;0.0424212494151298!GO:0019959;interleukin-8 binding;0.0425457451049743!GO:0010037;response to carbon dioxide;0.0425457451049743!GO:0018196;peptidyl-asparagine modification;0.0427894226143616!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0427894226143616!GO:0006635;fatty acid beta-oxidation;0.0429852422401594!GO:0004185;serine carboxypeptidase activity;0.0431215363534999!GO:0030508;thiol-disulfide exchange intermediate activity;0.0436523763901111!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0436711596932664!GO:0046982;protein heterodimerization activity;0.0436752426349558!GO:0043241;protein complex disassembly;0.0442341478609654!GO:0009124;nucleoside monophosphate biosynthetic process;0.0442341478609654!GO:0009123;nucleoside monophosphate metabolic process;0.0442341478609654!GO:0000123;histone acetyltransferase complex;0.0443394194444449!GO:0001832;blastocyst growth;0.0443394194444449!GO:0008430;selenium binding;0.0443394194444449!GO:0004659;prenyltransferase activity;0.0448474494553082!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0448524179621303!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0449584096135783!GO:0044437;vacuolar part;0.044970685464676!GO:0050178;phenylpyruvate tautomerase activity;0.0452960811790393!GO:0008017;microtubule binding;0.0461833633193806!GO:0045941;positive regulation of transcription;0.0463273092309297!GO:0046467;membrane lipid biosynthetic process;0.0464312900193517!GO:0009889;regulation of biosynthetic process;0.0464776805908146!GO:0004523;ribonuclease H activity;0.0465757104432709!GO:0006564;L-serine biosynthetic process;0.0465757104432709!GO:0050749;apolipoprotein E receptor binding;0.0468183795225112!GO:0019321;pentose metabolic process;0.0470341713178412!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0473395881896779!GO:0016584;nucleosome positioning;0.0479195698745706!GO:0030911;TPR domain binding;0.0479836456862415!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0483156515872!GO:0035267;NuA4 histone acetyltransferase complex;0.0483156515872!GO:0044450;microtubule organizing center part;0.0485581908451709!GO:0002018;renin-angiotensin regulation of aldosterone production;0.0487686823328378!GO:0048143;astrocyte activation;0.0487686823328378!GO:0046622;positive regulation of organ growth;0.0487686823328378!GO:0031701;angiotensin receptor binding;0.0487686823328378!GO:0031703;type 2 angiotensin receptor binding;0.0487686823328378!GO:0045723;positive regulation of fatty acid biosynthetic process;0.0487686823328378!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.0487686823328378!GO:0042756;drinking behavior;0.0487686823328378!GO:0002019;angiotensin mediated regulation of renal output;0.0487686823328378!GO:0031702;type 1 angiotensin receptor binding;0.0487686823328378!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.0487686823328378!GO:0000726;non-recombinational repair;0.0488451948308275!GO:0016829;lyase activity;0.0488451948308275!GO:0008637;apoptotic mitochondrial changes;0.049783226965114!GO:0031577;spindle checkpoint;0.0498950819170908 | |||
|sample_id=10818 | |sample_id=10818 | ||
|sample_note= | |sample_note= | ||
|sample_sex=male | |sample_sex=male | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=HNF4A_NR2F1,2:4.6336281934;HNF1A:3.99717269921;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.60930536053;FOXA2:3.33927933333;LEF1_TCF7_TCF7L1,2:2.15397537322;bHLH_family:2.12741821655;FOX{F1,F2,J1}:1.80206720245;NFY{A,B,C}:1.67298401765;ONECUT1,2:1.53306514262;E2F1..5:1.47218935472;NR6A1:1.41105575924;ELK1,4_GABP{A,B1}:1.22812324132;ADNP_IRX_SIX_ZHX:1.22622287794;ZNF143:1.21370728208;YY1:1.19944744554;NR1H4:1.12160458658;PBX1:1.09634034476;SOX{8,9,10}:1.00298395579;GFI1:0.922058059351;PAX3,7:0.902921312315;EN1,2:0.901876383469;SNAI1..3:0.87566846701;NRF1:0.859955649586;NR5A1,2:0.828385734518;RORA:0.810472286197;AIRE:0.783046346075;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.7259271211;NKX3-2:0.673379995048;MYB:0.672073145583;ZEB1:0.659359050625;FOXM1:0.562649799346;SOX2:0.547227504721;CEBPA,B_DDIT3:0.52604824284;TFDP1:0.488342553285;ESRRA:0.454063815212;LHX3,4:0.436469281847;FOX{D1,D2}:0.402919953036;AR:0.388461214754;TP53:0.368832507105;POU6F1:0.338689630283;EBF1:0.307678860475;ALX4:0.303356254065;XCPE1{core}:0.297641052304;FOXD3:0.296436459775;TOPORS:0.287623212965;MYOD1:0.286324937579;PITX1..3:0.277354300827;HIC1:0.272534599514;RXRA_VDR{dimer}:0.272479340097;PPARG:0.264385959956;NFIL3:0.252935182129;HLF:0.243785436409;PAX4:0.202287790417;CUX2:0.175411786385;ZFP161:0.105377995485;MTE{core}:0.0955578009168;UFEwm:0.0862451185798;ELF1,2,4:0.083898217054;BREu{core}:0.0827288776191;SP1:0.0764001649076;T:0.0567543349752;DBP:0.0507037044456;GATA6:0.0358617307176;FOXP1:0.02042952028;NKX3-1:-0.0091455844359;PAX1,9:-0.0244231561868;STAT5{A,B}:-0.0254456577132;RXR{A,B,G}:-0.0527394006977;SOX5:-0.0591386476518;MAZ:-0.0618925932423;HOX{A6,A7,B6,B7}:-0.0630616025849;HOXA9_MEIS1:-0.0808632429101;PAX2:-0.0813891995176;FOXQ1:-0.0863150778232;VSX1,2:-0.0867928497714;TFAP2{A,C}:-0.088404735657;SREBF1,2:-0.100780591823;SOX17:-0.113059214839;CDC5L:-0.119628746783;TBX4,5:-0.137838726667;STAT2,4,6:-0.150788072923;TFCP2:-0.168986524537;ARID5B:-0.169765936193;NFKB1_REL_RELA:-0.179256503135;EVI1:-0.181421948364;KLF4:-0.199461110483;HOX{A5,B5}:-0.231126104355;POU3F1..4:-0.231380848457;PATZ1:-0.235080086706;IKZF2:-0.249566713957;RBPJ:-0.251541126389;MTF1:-0.257721985754;TEAD1:-0.265014278276;PAX8:-0.274785039974;GLI1..3:-0.289152488983;LMO2:-0.291892020951;AHR_ARNT_ARNT2:-0.29329109175;TAL1_TCF{3,4,12}:-0.296079428629;OCT4_SOX2{dimer}:-0.300254852144;MED-1{core}:-0.304332159387;HES1:-0.307012617688;ATF5_CREB3:-0.334769975363;ESR1:-0.340029799811;ALX1:-0.359474450378;ZNF423:-0.369557480886;TLX1..3_NFIC{dimer}:-0.374985232375;NFE2:-0.380027598146;ATF6:-0.380262361062;HMGA1,2:-0.386767557068;NKX2-3_NKX2-5:-0.389337039091;BPTF:-0.389647665459;FOXO1,3,4:-0.396370466887;FOSL2:-0.396973575047;FOXN1:-0.415294191135;IRF7:-0.448223816162;HOX{A4,D4}:-0.45066667056;PDX1:-0.451787256182;ZNF148:-0.456217717467;STAT1,3:-0.459254490781;DMAP1_NCOR{1,2}_SMARC:-0.460719613092;FOXP3:-0.480720551971;REST:-0.495102245442;NFIX:-0.495141346024;POU2F1..3:-0.504319834073;NKX6-1,2:-0.513621985632;CREB1:-0.536924423225;GTF2A1,2:-0.552714762347;POU5F1:-0.556391852954;RFX2..5_RFXANK_RFXAP:-0.556599876882;FOS_FOS{B,L1}_JUN{B,D}:-0.569258452363;NFE2L2:-0.572069391369;NR3C1:-0.576684824434;IRF1,2:-0.586548740652;BACH2:-0.602430716358;EGR1..3:-0.604632244846;GATA4:-0.612778289875;IKZF1:-0.629078627408;TBP:-0.630279575528;ZBTB16:-0.657023167473;ATF2:-0.664382555617;PAX5:-0.671009802437;NANOG{mouse}:-0.672935505211;TFAP2B:-0.67642168335;SPIB:-0.680899141763;XBP1:-0.686242024725;RREB1:-0.688815481404;SPI1:-0.698228639668;CDX1,2,4:-0.709918155467;ATF4:-0.715802125117;MYBL2:-0.775715607337;MEF2{A,B,C,D}:-0.780468707287;NHLH1,2:-0.784899818125;SRF:-0.824322749622;HAND1,2:-0.846714368056;JUN:-0.86010430025;RUNX1..3:-0.863473292534;GTF2I:-0.86668683575;RFX1:-0.908163007912;GCM1,2:-0.917002267437;NKX2-2,8:-0.919300342945;HSF1,2:-0.96632803329;TFAP4:-0.98925164156;CRX:-1.00233198688;ZIC1..3:-1.01473277458;POU1F1:-1.03152041126;MYFfamily:-1.03366152559;ZBTB6:-1.04522230986;ETS1,2:-1.05258606165;PRDM1:-1.07715176868;MAFB:-1.08155965378;GFI1B:-1.1136452616;PAX6:-1.11478530939;NFE2L1:-1.11747408716;NKX2-1,4:-1.11937821277;ZNF384:-1.13048107978;EP300:-1.22663243284;SPZ1:-1.24007400003;FOX{I1,J2}:-1.2543459242;PRRX1,2:-1.25451630451;MZF1:-1.25575545947;TEF:-1.27780133315;NFATC1..3:-1.30437750482;NANOG:-1.38164792331;TGIF1:-1.39220943109;FOXL1:-1.52930909718;ZNF238:-1.62360021352;HBP1_HMGB_SSRP1_UBTF:-1.63393470762;GZF1:-1.6454587951;TLX2:-1.73277421616;HIF1A:-1.89638195561;HMX1:-1.9038884297;SMAD1..7,9:-2.02116633165 | |top_motifs=HNF4A_NR2F1,2:4.6336281934;HNF1A:3.99717269921;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.60930536053;FOXA2:3.33927933333;LEF1_TCF7_TCF7L1,2:2.15397537322;bHLH_family:2.12741821655;FOX{F1,F2,J1}:1.80206720245;NFY{A,B,C}:1.67298401765;ONECUT1,2:1.53306514262;E2F1..5:1.47218935472;NR6A1:1.41105575924;ELK1,4_GABP{A,B1}:1.22812324132;ADNP_IRX_SIX_ZHX:1.22622287794;ZNF143:1.21370728208;YY1:1.19944744554;NR1H4:1.12160458658;PBX1:1.09634034476;SOX{8,9,10}:1.00298395579;GFI1:0.922058059351;PAX3,7:0.902921312315;EN1,2:0.901876383469;SNAI1..3:0.87566846701;NRF1:0.859955649586;NR5A1,2:0.828385734518;RORA:0.810472286197;AIRE:0.783046346075;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.7259271211;NKX3-2:0.673379995048;MYB:0.672073145583;ZEB1:0.659359050625;FOXM1:0.562649799346;SOX2:0.547227504721;CEBPA,B_DDIT3:0.52604824284;TFDP1:0.488342553285;ESRRA:0.454063815212;LHX3,4:0.436469281847;FOX{D1,D2}:0.402919953036;AR:0.388461214754;TP53:0.368832507105;POU6F1:0.338689630283;EBF1:0.307678860475;ALX4:0.303356254065;XCPE1{core}:0.297641052304;FOXD3:0.296436459775;TOPORS:0.287623212965;MYOD1:0.286324937579;PITX1..3:0.277354300827;HIC1:0.272534599514;RXRA_VDR{dimer}:0.272479340097;PPARG:0.264385959956;NFIL3:0.252935182129;HLF:0.243785436409;PAX4:0.202287790417;CUX2:0.175411786385;ZFP161:0.105377995485;MTE{core}:0.0955578009168;UFEwm:0.0862451185798;ELF1,2,4:0.083898217054;BREu{core}:0.0827288776191;SP1:0.0764001649076;T:0.0567543349752;DBP:0.0507037044456;GATA6:0.0358617307176;FOXP1:0.02042952028;NKX3-1:-0.0091455844359;PAX1,9:-0.0244231561868;STAT5{A,B}:-0.0254456577132;RXR{A,B,G}:-0.0527394006977;SOX5:-0.0591386476518;MAZ:-0.0618925932423;HOX{A6,A7,B6,B7}:-0.0630616025849;HOXA9_MEIS1:-0.0808632429101;PAX2:-0.0813891995176;FOXQ1:-0.0863150778232;VSX1,2:-0.0867928497714;TFAP2{A,C}:-0.088404735657;SREBF1,2:-0.100780591823;SOX17:-0.113059214839;CDC5L:-0.119628746783;TBX4,5:-0.137838726667;STAT2,4,6:-0.150788072923;TFCP2:-0.168986524537;ARID5B:-0.169765936193;NFKB1_REL_RELA:-0.179256503135;EVI1:-0.181421948364;KLF4:-0.199461110483;HOX{A5,B5}:-0.231126104355;POU3F1..4:-0.231380848457;PATZ1:-0.235080086706;IKZF2:-0.249566713957;RBPJ:-0.251541126389;MTF1:-0.257721985754;TEAD1:-0.265014278276;PAX8:-0.274785039974;GLI1..3:-0.289152488983;LMO2:-0.291892020951;AHR_ARNT_ARNT2:-0.29329109175;TAL1_TCF{3,4,12}:-0.296079428629;OCT4_SOX2{dimer}:-0.300254852144;MED-1{core}:-0.304332159387;HES1:-0.307012617688;ATF5_CREB3:-0.334769975363;ESR1:-0.340029799811;ALX1:-0.359474450378;ZNF423:-0.369557480886;TLX1..3_NFIC{dimer}:-0.374985232375;NFE2:-0.380027598146;ATF6:-0.380262361062;HMGA1,2:-0.386767557068;NKX2-3_NKX2-5:-0.389337039091;BPTF:-0.389647665459;FOXO1,3,4:-0.396370466887;FOSL2:-0.396973575047;FOXN1:-0.415294191135;IRF7:-0.448223816162;HOX{A4,D4}:-0.45066667056;PDX1:-0.451787256182;ZNF148:-0.456217717467;STAT1,3:-0.459254490781;DMAP1_NCOR{1,2}_SMARC:-0.460719613092;FOXP3:-0.480720551971;REST:-0.495102245442;NFIX:-0.495141346024;POU2F1..3:-0.504319834073;NKX6-1,2:-0.513621985632;CREB1:-0.536924423225;GTF2A1,2:-0.552714762347;POU5F1:-0.556391852954;RFX2..5_RFXANK_RFXAP:-0.556599876882;FOS_FOS{B,L1}_JUN{B,D}:-0.569258452363;NFE2L2:-0.572069391369;NR3C1:-0.576684824434;IRF1,2:-0.586548740652;BACH2:-0.602430716358;EGR1..3:-0.604632244846;GATA4:-0.612778289875;IKZF1:-0.629078627408;TBP:-0.630279575528;ZBTB16:-0.657023167473;ATF2:-0.664382555617;PAX5:-0.671009802437;NANOG{mouse}:-0.672935505211;TFAP2B:-0.67642168335;SPIB:-0.680899141763;XBP1:-0.686242024725;RREB1:-0.688815481404;SPI1:-0.698228639668;CDX1,2,4:-0.709918155467;ATF4:-0.715802125117;MYBL2:-0.775715607337;MEF2{A,B,C,D}:-0.780468707287;NHLH1,2:-0.784899818125;SRF:-0.824322749622;HAND1,2:-0.846714368056;JUN:-0.86010430025;RUNX1..3:-0.863473292534;GTF2I:-0.86668683575;RFX1:-0.908163007912;GCM1,2:-0.917002267437;NKX2-2,8:-0.919300342945;HSF1,2:-0.96632803329;TFAP4:-0.98925164156;CRX:-1.00233198688;ZIC1..3:-1.01473277458;POU1F1:-1.03152041126;MYFfamily:-1.03366152559;ZBTB6:-1.04522230986;ETS1,2:-1.05258606165;PRDM1:-1.07715176868;MAFB:-1.08155965378;GFI1B:-1.1136452616;PAX6:-1.11478530939;NFE2L1:-1.11747408716;NKX2-1,4:-1.11937821277;ZNF384:-1.13048107978;EP300:-1.22663243284;SPZ1:-1.24007400003;FOX{I1,J2}:-1.2543459242;PRRX1,2:-1.25451630451;MZF1:-1.25575545947;TEF:-1.27780133315;NFATC1..3:-1.30437750482;NANOG:-1.38164792331;TGIF1:-1.39220943109;FOXL1:-1.52930909718;ZNF238:-1.62360021352;HBP1_HMGB_SSRP1_UBTF:-1.63393470762;GZF1:-1.6454587951;TLX2:-1.73277421616;HIF1A:-1.89638195561;HMX1:-1.9038884297;SMAD1..7,9:-2.02116633165 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10818-111B8;search_select_hide=table117:FF:10818-111B8 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12328 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12328
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12328
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.438 |
| 10 | 10 | 0.553 |
| 100 | 100 | 0.0352 |
| 101 | 101 | 0.326 |
| 102 | 102 | 0.161 |
| 103 | 103 | 0.767 |
| 104 | 104 | 0.695 |
| 105 | 105 | 0.937 |
| 106 | 106 | 0.0139 |
| 107 | 107 | 0.576 |
| 108 | 108 | 0.427 |
| 109 | 109 | 0.0825 |
| 11 | 11 | 0.752 |
| 110 | 110 | 0.919 |
| 111 | 111 | 0.698 |
| 112 | 112 | 0.172 |
| 113 | 113 | 0.0935 |
| 114 | 114 | 0.368 |
| 115 | 115 | 0.642 |
| 116 | 116 | 0.883 |
| 117 | 117 | 0.124 |
| 118 | 118 | 0.347 |
| 119 | 119 | 0.89 |
| 12 | 12 | 0.603 |
| 120 | 120 | 0.382 |
| 121 | 121 | 0.58 |
| 122 | 122 | 0.867 |
| 123 | 123 | 0.394 |
| 124 | 124 | 0.174 |
| 125 | 125 | 0.483 |
| 126 | 126 | 0.581 |
| 127 | 127 | 0.34 |
| 128 | 128 | 0.0128 |
| 129 | 129 | 0.785 |
| 13 | 13 | 1.06797e-4 |
| 130 | 130 | 0.813 |
| 131 | 131 | 0.0261 |
| 132 | 132 | 0.571 |
| 133 | 133 | 0.00841 |
| 134 | 134 | 0.402 |
| 135 | 135 | 0.0394 |
| 136 | 136 | 0.0132 |
| 137 | 137 | 0.00231 |
| 138 | 138 | 0.379 |
| 139 | 139 | 0.227 |
| 14 | 14 | 0.0662 |
| 140 | 140 | 0.7 |
| 141 | 141 | 0.222 |
| 142 | 142 | 0.748 |
| 143 | 143 | 0.129 |
| 144 | 144 | 0.437 |
| 145 | 145 | 0.645 |
| 146 | 146 | 0.904 |
| 147 | 147 | 0.575 |
| 148 | 148 | 0.893 |
| 149 | 149 | 0.784 |
| 15 | 15 | 0.933 |
| 150 | 150 | 0.53 |
| 151 | 151 | 0.727 |
| 152 | 152 | 0.996 |
| 153 | 153 | 0.344 |
| 154 | 154 | 0.138 |
| 155 | 155 | 0.279 |
| 156 | 156 | 0.884 |
| 157 | 157 | 0.485 |
| 158 | 158 | 0.991 |
| 159 | 159 | 0.678 |
| 16 | 16 | 0.716 |
| 160 | 160 | 0.752 |
| 161 | 161 | 0.929 |
| 162 | 162 | 0.801 |
| 163 | 163 | 0.704 |
| 164 | 164 | 0.999 |
| 165 | 165 | 0.724 |
| 166 | 166 | 0.352 |
| 167 | 167 | 0.989 |
| 168 | 168 | 0.231 |
| 169 | 169 | 0.287 |
| 17 | 17 | 0.705 |
| 18 | 18 | 0.0495 |
| 19 | 19 | 0.808 |
| 2 | 2 | 0.086 |
| 20 | 20 | 0.17 |
| 21 | 21 | 0.406 |
| 22 | 22 | 0.544 |
| 23 | 23 | 0.00327 |
| 24 | 24 | 0.855 |
| 25 | 25 | 0.613 |
| 26 | 26 | 0.0565 |
| 27 | 27 | 0.22 |
| 28 | 28 | 0.955 |
| 29 | 29 | 0.214 |
| 3 | 3 | 0.996 |
| 30 | 30 | 0.676 |
| 31 | 31 | 0.787 |
| 32 | 32 | 0.246 |
| 33 | 33 | 0.295 |
| 34 | 34 | 0.439 |
| 35 | 35 | 0.891 |
| 36 | 36 | 0.153 |
| 37 | 37 | 0.77 |
| 38 | 38 | 0.871 |
| 39 | 39 | 0.879 |
| 4 | 4 | 0.912 |
| 40 | 40 | 0.00695 |
| 41 | 41 | 0.063 |
| 42 | 42 | 0.348 |
| 43 | 43 | 0.864 |
| 44 | 44 | 0.14 |
| 45 | 45 | 0.981 |
| 46 | 46 | 0.674 |
| 47 | 47 | 0.292 |
| 48 | 48 | 0.545 |
| 49 | 49 | 0.869 |
| 5 | 5 | 0.41 |
| 50 | 50 | 0.203 |
| 51 | 51 | 0.711 |
| 52 | 52 | 0.394 |
| 53 | 53 | 0.337 |
| 54 | 54 | 0.809 |
| 55 | 55 | 0.276 |
| 56 | 56 | 0.847 |
| 57 | 57 | 0.982 |
| 58 | 58 | 0.598 |
| 59 | 59 | 0.491 |
| 6 | 6 | 0.313 |
| 60 | 60 | 0.292 |
| 61 | 61 | 0.112 |
| 62 | 62 | 0.225 |
| 63 | 63 | 0.959 |
| 64 | 64 | 0.855 |
| 65 | 65 | 0.055 |
| 66 | 66 | 0.00947 |
| 67 | 67 | 0.341 |
| 68 | 68 | 0.19 |
| 69 | 69 | 0.436 |
| 7 | 7 | 0.0472 |
| 70 | 70 | 0.134 |
| 71 | 71 | 0.484 |
| 72 | 72 | 0.138 |
| 73 | 73 | 0.139 |
| 74 | 74 | 0.103 |
| 75 | 75 | 0.00138 |
| 76 | 76 | 0.653 |
| 77 | 77 | 0.964 |
| 78 | 78 | 0.0187 |
| 79 | 79 | 0.0186 |
| 8 | 8 | 0.792 |
| 80 | 80 | 0.0473 |
| 81 | 81 | 0.167 |
| 82 | 82 | 0.0837 |
| 83 | 83 | 0.113 |
| 84 | 84 | 0.143 |
| 85 | 85 | 0.0437 |
| 86 | 86 | 0.798 |
| 87 | 87 | 0.0638 |
| 88 | 88 | 0.444 |
| 89 | 89 | 0.404 |
| 9 | 9 | 0.0648 |
| 90 | 90 | 0.593 |
| 91 | 91 | 0.0146 |
| 92 | 92 | 0.0753 |
| 93 | 93 | 0.774 |
| 94 | 94 | 0.0751 |
| 95 | 95 | 0.00291 |
| 96 | 96 | 0.329 |
| 97 | 97 | 0.687 |
| 98 | 98 | 0.877 |
| 99 | 99 | 0.224 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12328
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100599 Hep-G2 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0100599 (Hep-G2 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
