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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005169
|DRA_sample_Accession=CAGE@SAMD00005169
|accession_numbers=CAGE;DRX007906;DRR008778;DRZ000203;DRZ001588
|accession_numbers=CAGE;DRX007906;DRR008778;DRZ000203;DRZ001588;DRZ011553;DRZ012938
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep2.CNhs12329.10819-111B9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep2.CNhs12329.10819-111B9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep2.CNhs12329.10819-111B9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep2.CNhs12329.10819-111B9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep2.CNhs12329.10819-111B9.hg38.nobarcode.ctss.bed.gz
|id=FF:10819-111B9
|id=FF:10819-111B9
|is_a=EFO:0002091;;FF:0000210;;FF:0100599
|is_a=EFO:0002091;;FF:0000210;;FF:0100599
Line 46: Line 51:
|library_id=CNhs12329
|library_id=CNhs12329
|library_id_phase_based=2:CNhs12329
|library_id_phase_based=2:CNhs12329
|name="hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10819
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10819
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs12329,LSID913,release011,COMPLETED"
|profile_hcage=CNhs12329,LSID913,release011,COMPLETED
|profile_rnaseq=
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|profile_srnaseq=",,,"
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=HNF4A_NR2F1,2:4.60320277255;HNF1A:3.93152016869;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.53141945589;FOXA2:3.21676503488;bHLH_family:2.08312545111;LEF1_TCF7_TCF7L1,2:2.06884496105;FOX{F1,F2,J1}:1.72727329736;NFY{A,B,C}:1.63943330713;NR1H4:1.58400182729;E2F1..5:1.45016536368;ONECUT1,2:1.39297635698;NR6A1:1.36037476294;ELK1,4_GABP{A,B1}:1.2911821517;YY1:1.24461136798;ADNP_IRX_SIX_ZHX:1.21526252449;PBX1:1.18899925622;ZNF143:1.18285456087;SOX{8,9,10}:0.958778491269;EN1,2:0.923965858727;SNAI1..3:0.898935255447;GFI1:0.890295818172;NRF1:0.866043291643;PAX3,7:0.817946991728;AIRE:0.794749281272;RORA:0.775314185763;NR5A1,2:0.713987738809;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.691030038172;FOXM1:0.689163936535;NKX3-2:0.675244916699;ZEB1:0.670763427514;MYB:0.626637189883;TFDP1:0.616820623376;FOXD3:0.561029603462;LHX3,4:0.550882231055;CEBPA,B_DDIT3:0.526569210065;RXRA_VDR{dimer}:0.515421384131;SOX2:0.500725863145;ALX4:0.469314298392;EBF1:0.428286389857;ESRRA:0.42796250179;PPARG:0.419999419709;TP53:0.402955558967;POU6F1:0.388569022481;NFIL3:0.353062439508;FOX{D1,D2}:0.326673662771;XCPE1{core}:0.305363649521;MYOD1:0.304989781692;AR:0.293630171918;HIC1:0.265100248614;UFEwm:0.257091260043;HLF:0.251839939794;CUX2:0.201604334201;ELF1,2,4:0.190179821635;GATA6:0.124480330166;MTE{core}:0.102806015159;STAT5{A,B}:0.0865402799153;PAX1,9:0.0824005123498;BREu{core}:0.0812208059745;ARID5B:0.0700803405614;TOPORS:0.069216640457;DBP:0.0510210124415;PITX1..3:0.0225483680782;SP1:0.012860639234;EVI1:-0.00262288329889;MAZ:-0.00358231330202;POU3F1..4:-0.0317362974368;PAX4:-0.03595937989;ZFP161:-0.0647003954002;RBPJ:-0.0688615418112;RXR{A,B,G}:-0.0819690639496;HOXA9_MEIS1:-0.0958807107927;TFCP2:-0.0970751573571;STAT2,4,6:-0.102652183197;PAX2:-0.127898834739;TFAP2{A,C}:-0.127963122576;SREBF1,2:-0.128302823803;TBX4,5:-0.130429769546;NFKB1_REL_RELA:-0.143525425295;SOX17:-0.144601348087;KLF4:-0.175064652198;FOXQ1:-0.199807546757;MTF1:-0.206737832645;NKX3-1:-0.225221208237;IKZF2:-0.227517240843;FOXP1:-0.236032373188;TAL1_TCF{3,4,12}:-0.239671287465;SOX5:-0.246505924481;T:-0.255856838122;PATZ1:-0.255930481384;TEAD1:-0.268152938014;LMO2:-0.278988186376;FOXN1:-0.280576332007;GLI1..3:-0.286384558628;ZNF423:-0.292572481947;HOX{A4,D4}:-0.299914179511;AHR_ARNT_ARNT2:-0.304629415922;ATF5_CREB3:-0.31170245517;VSX1,2:-0.311872159982;CDC5L:-0.327901462635;OCT4_SOX2{dimer}:-0.341967754099;ATF6:-0.346022512582;HOX{A5,B5}:-0.346289743873;MED-1{core}:-0.361220750809;HES1:-0.374902481698;FOSL2:-0.392629755886;NFE2:-0.395638129988;ALX1:-0.405200113002;REST:-0.424037223231;ESR1:-0.427832418194;STAT1,3:-0.43859710743;HMGA1,2:-0.439402845707;IRF7:-0.441083079302;FOXO1,3,4:-0.453846789243;HOX{A6,A7,B6,B7}:-0.459181836366;NANOG{mouse}:-0.463906344124;NKX2-3_NKX2-5:-0.476046877341;TLX1..3_NFIC{dimer}:-0.496366347587;ZNF148:-0.498761694712;GATA4:-0.541751254673;NFE2L2:-0.545355558311;POU2F1..3:-0.547351316012;IKZF1:-0.547792827802;IRF1,2:-0.550832138254;FOS_FOS{B,L1}_JUN{B,D}:-0.560210321435;PAX8:-0.563474027726;GTF2A1,2:-0.568611795993;FOXP3:-0.579454368901;BACH2:-0.593035963088;CREB1:-0.601342277282;PAX5:-0.603295525252;CDX1,2,4:-0.619852778914;BPTF:-0.634784821938;DMAP1_NCOR{1,2}_SMARC:-0.637442692536;NR3C1:-0.638656947093;NKX6-1,2:-0.641697149146;SPI1:-0.650625821239;RFX2..5_RFXANK_RFXAP:-0.657187555346;SPIB:-0.667011374577;NFIX:-0.668451068185;RREB1:-0.677469317077;HSF1,2:-0.700777083583;ATF4:-0.704550936793;EGR1..3:-0.706522985006;TBP:-0.707218302131;TFAP2B:-0.723275079264;ZBTB16:-0.723318756013;POU5F1:-0.730556572177;PDX1:-0.755720942591;CRX:-0.774788952756;ATF2:-0.775910505455;NHLH1,2:-0.784871866831;XBP1:-0.792160057002;SRF:-0.812910955068;MYBL2:-0.815183219949;RUNX1..3:-0.825620426864;MEF2{A,B,C,D}:-0.83608777123;HAND1,2:-0.840453729078;JUN:-0.866818441091;GTF2I:-0.867347441112;RFX1:-0.876984722966;GCM1,2:-0.878233821313;NFE2L1:-0.898050213293;ZBTB6:-0.909799809911;NKX2-2,8:-0.912609315002;TFAP4:-0.932418014115;MYFfamily:-0.945177284026;MAFB:-0.986811783106;ZIC1..3:-1.0156843388;NKX2-1,4:-1.01585617117;GFI1B:-1.01876850975;PAX6:-1.06760529573;ETS1,2:-1.08801432771;PRDM1:-1.12300423393;PRRX1,2:-1.19834286554;SPZ1:-1.20991284389;EP300:-1.21908634494;ZNF384:-1.22838615818;POU1F1:-1.22901242727;NFATC1..3:-1.25572646329;NANOG:-1.26616966907;MZF1:-1.30712239805;TGIF1:-1.36639519438;TEF:-1.45601302375;FOX{I1,J2}:-1.51545999577;ZNF238:-1.59969060724;HBP1_HMGB_SSRP1_UBTF:-1.63846506503;TLX2:-1.68629694282;GZF1:-1.68788036141;HMX1:-1.71480096069;SMAD1..7,9:-1.84194987373;FOXL1:-1.88331195017;HIF1A:-1.95555124624
|top_motifs=HNF4A_NR2F1,2:4.60320277255;HNF1A:3.93152016869;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.53141945589;FOXA2:3.21676503488;bHLH_family:2.08312545111;LEF1_TCF7_TCF7L1,2:2.06884496105;FOX{F1,F2,J1}:1.72727329736;NFY{A,B,C}:1.63943330713;NR1H4:1.58400182729;E2F1..5:1.45016536368;ONECUT1,2:1.39297635698;NR6A1:1.36037476294;ELK1,4_GABP{A,B1}:1.2911821517;YY1:1.24461136798;ADNP_IRX_SIX_ZHX:1.21526252449;PBX1:1.18899925622;ZNF143:1.18285456087;SOX{8,9,10}:0.958778491269;EN1,2:0.923965858727;SNAI1..3:0.898935255447;GFI1:0.890295818172;NRF1:0.866043291643;PAX3,7:0.817946991728;AIRE:0.794749281272;RORA:0.775314185763;NR5A1,2:0.713987738809;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.691030038172;FOXM1:0.689163936535;NKX3-2:0.675244916699;ZEB1:0.670763427514;MYB:0.626637189883;TFDP1:0.616820623376;FOXD3:0.561029603462;LHX3,4:0.550882231055;CEBPA,B_DDIT3:0.526569210065;RXRA_VDR{dimer}:0.515421384131;SOX2:0.500725863145;ALX4:0.469314298392;EBF1:0.428286389857;ESRRA:0.42796250179;PPARG:0.419999419709;TP53:0.402955558967;POU6F1:0.388569022481;NFIL3:0.353062439508;FOX{D1,D2}:0.326673662771;XCPE1{core}:0.305363649521;MYOD1:0.304989781692;AR:0.293630171918;HIC1:0.265100248614;UFEwm:0.257091260043;HLF:0.251839939794;CUX2:0.201604334201;ELF1,2,4:0.190179821635;GATA6:0.124480330166;MTE{core}:0.102806015159;STAT5{A,B}:0.0865402799153;PAX1,9:0.0824005123498;BREu{core}:0.0812208059745;ARID5B:0.0700803405614;TOPORS:0.069216640457;DBP:0.0510210124415;PITX1..3:0.0225483680782;SP1:0.012860639234;EVI1:-0.00262288329889;MAZ:-0.00358231330202;POU3F1..4:-0.0317362974368;PAX4:-0.03595937989;ZFP161:-0.0647003954002;RBPJ:-0.0688615418112;RXR{A,B,G}:-0.0819690639496;HOXA9_MEIS1:-0.0958807107927;TFCP2:-0.0970751573571;STAT2,4,6:-0.102652183197;PAX2:-0.127898834739;TFAP2{A,C}:-0.127963122576;SREBF1,2:-0.128302823803;TBX4,5:-0.130429769546;NFKB1_REL_RELA:-0.143525425295;SOX17:-0.144601348087;KLF4:-0.175064652198;FOXQ1:-0.199807546757;MTF1:-0.206737832645;NKX3-1:-0.225221208237;IKZF2:-0.227517240843;FOXP1:-0.236032373188;TAL1_TCF{3,4,12}:-0.239671287465;SOX5:-0.246505924481;T:-0.255856838122;PATZ1:-0.255930481384;TEAD1:-0.268152938014;LMO2:-0.278988186376;FOXN1:-0.280576332007;GLI1..3:-0.286384558628;ZNF423:-0.292572481947;HOX{A4,D4}:-0.299914179511;AHR_ARNT_ARNT2:-0.304629415922;ATF5_CREB3:-0.31170245517;VSX1,2:-0.311872159982;CDC5L:-0.327901462635;OCT4_SOX2{dimer}:-0.341967754099;ATF6:-0.346022512582;HOX{A5,B5}:-0.346289743873;MED-1{core}:-0.361220750809;HES1:-0.374902481698;FOSL2:-0.392629755886;NFE2:-0.395638129988;ALX1:-0.405200113002;REST:-0.424037223231;ESR1:-0.427832418194;STAT1,3:-0.43859710743;HMGA1,2:-0.439402845707;IRF7:-0.441083079302;FOXO1,3,4:-0.453846789243;HOX{A6,A7,B6,B7}:-0.459181836366;NANOG{mouse}:-0.463906344124;NKX2-3_NKX2-5:-0.476046877341;TLX1..3_NFIC{dimer}:-0.496366347587;ZNF148:-0.498761694712;GATA4:-0.541751254673;NFE2L2:-0.545355558311;POU2F1..3:-0.547351316012;IKZF1:-0.547792827802;IRF1,2:-0.550832138254;FOS_FOS{B,L1}_JUN{B,D}:-0.560210321435;PAX8:-0.563474027726;GTF2A1,2:-0.568611795993;FOXP3:-0.579454368901;BACH2:-0.593035963088;CREB1:-0.601342277282;PAX5:-0.603295525252;CDX1,2,4:-0.619852778914;BPTF:-0.634784821938;DMAP1_NCOR{1,2}_SMARC:-0.637442692536;NR3C1:-0.638656947093;NKX6-1,2:-0.641697149146;SPI1:-0.650625821239;RFX2..5_RFXANK_RFXAP:-0.657187555346;SPIB:-0.667011374577;NFIX:-0.668451068185;RREB1:-0.677469317077;HSF1,2:-0.700777083583;ATF4:-0.704550936793;EGR1..3:-0.706522985006;TBP:-0.707218302131;TFAP2B:-0.723275079264;ZBTB16:-0.723318756013;POU5F1:-0.730556572177;PDX1:-0.755720942591;CRX:-0.774788952756;ATF2:-0.775910505455;NHLH1,2:-0.784871866831;XBP1:-0.792160057002;SRF:-0.812910955068;MYBL2:-0.815183219949;RUNX1..3:-0.825620426864;MEF2{A,B,C,D}:-0.83608777123;HAND1,2:-0.840453729078;JUN:-0.866818441091;GTF2I:-0.867347441112;RFX1:-0.876984722966;GCM1,2:-0.878233821313;NFE2L1:-0.898050213293;ZBTB6:-0.909799809911;NKX2-2,8:-0.912609315002;TFAP4:-0.932418014115;MYFfamily:-0.945177284026;MAFB:-0.986811783106;ZIC1..3:-1.0156843388;NKX2-1,4:-1.01585617117;GFI1B:-1.01876850975;PAX6:-1.06760529573;ETS1,2:-1.08801432771;PRDM1:-1.12300423393;PRRX1,2:-1.19834286554;SPZ1:-1.20991284389;EP300:-1.21908634494;ZNF384:-1.22838615818;POU1F1:-1.22901242727;NFATC1..3:-1.25572646329;NANOG:-1.26616966907;MZF1:-1.30712239805;TGIF1:-1.36639519438;TEF:-1.45601302375;FOX{I1,J2}:-1.51545999577;ZNF238:-1.59969060724;HBP1_HMGB_SSRP1_UBTF:-1.63846506503;TLX2:-1.68629694282;GZF1:-1.68788036141;HMX1:-1.71480096069;SMAD1..7,9:-1.84194987373;FOXL1:-1.88331195017;HIF1A:-1.95555124624
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10819-111B9;search_select_hide=table117:FF:10819-111B9
}}
}}

Latest revision as of 15:07, 3 June 2020

Name:hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2
Species:Human (Homo sapiens)
Library ID:CNhs12329
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexmale
age15
cell typehepatocyte
cell lineHepG2
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005169
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12329 CAGE DRX007906 DRR008778
Accession ID Hg19

Library idBAMCTSS
CNhs12329 DRZ000203 DRZ001588
Accession ID Hg38

Library idBAMCTSS
CNhs12329 DRZ011553 DRZ012938
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.236
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.573
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.22
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.954
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0345
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.271
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0446
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.15
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0475
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0344
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.391
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00316
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast8.733423e-4
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0.436
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.53
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.15
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0344
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.0344
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0.688
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.299
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12329

Jaspar motifP-value
MA0002.20.0142
MA0003.10.829
MA0004.10.0736
MA0006.10.378
MA0007.10.592
MA0009.10.533
MA0014.10.225
MA0017.14.05605e-26
MA0018.20.0351
MA0019.10.817
MA0024.11.71008e-6
MA0025.10.569
MA0027.10.607
MA0028.15.50807e-6
MA0029.10.00589
MA0030.10.44
MA0031.10.0719
MA0035.20.0179
MA0038.10.114
MA0039.20.14
MA0040.10.375
MA0041.10.973
MA0042.10.295
MA0043.10.411
MA0046.15.59063e-72
MA0047.23.03635e-4
MA0048.10.0345
MA0050.10.101
MA0051.10.145
MA0052.10.0127
MA0055.14.65199e-5
MA0057.10.956
MA0058.10.0212
MA0059.10.042
MA0060.13.45165e-16
MA0061.10.00189
MA0062.23.21323e-5
MA0065.27.62523e-9
MA0066.10.613
MA0067.10.00313
MA0068.10.623
MA0069.10.752
MA0070.10.279
MA0071.10.334
MA0072.10.375
MA0073.10.725
MA0074.10.679
MA0076.16.96864e-6
MA0077.10.0681
MA0078.10.533
MA0079.20.609
MA0080.23.30875e-9
MA0081.10.149
MA0083.10.0211
MA0084.10.349
MA0087.10.353
MA0088.10.0661
MA0090.10.93
MA0091.10.0693
MA0092.10.0709
MA0093.10.0396
MA0099.27.32719e-10
MA0100.10.0664
MA0101.10.191
MA0102.20.417
MA0103.10.0253
MA0104.20.0111
MA0105.10.00583
MA0106.10.0211
MA0107.10.017
MA0108.20.0543
MA0111.10.786
MA0112.20.906
MA0113.10.995
MA0114.11.15256e-34
MA0115.17.21156e-9
MA0116.10.628
MA0117.10.342
MA0119.10.0381
MA0122.10.306
MA0124.10.435
MA0125.10.349
MA0131.10.203
MA0135.10.261
MA0136.19.11153e-5
MA0137.20.252
MA0138.20.42
MA0139.10.0104
MA0140.10.0172
MA0141.12.80607e-5
MA0142.10.563
MA0143.10.943
MA0144.10.211
MA0145.10.294
MA0146.10.00448
MA0147.10.0155
MA0148.11.893e-4
MA0149.10.254
MA0150.10.00567
MA0152.10.198
MA0153.19.95041e-46
MA0154.10.392
MA0155.10.971
MA0156.10.0119
MA0157.10.271
MA0159.10.165
MA0160.10.00988
MA0162.10.902
MA0163.10.0538
MA0164.10.279
MA0258.10.683
MA0259.10.0775



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12329

Novel motifP-value
10.362
100.64
1000.0313
1010.289
1020.168
1030.805
1040.699
1050.822
1060.024
1070.476
1080.509
1090.046
110.901
1100.777
1110.739
1120.228
1130.207
1140.476
1150.984
1160.943
1170.142
1180.182
1190.998
120.653
1200.293
1210.64
1220.924
1230.162
1240.152
1250.603
1260.491
1270.378
1280.0146
1290.846
137.0385e-5
1300.821
1310.0297
1320.473
1330.0102
1340.394
1350.0537
1360.01
1370.00245
1380.436
1390.181
140.063
1400.826
1410.277
1420.755
1430.171
1440.541
1450.726
1460.844
1470.54
1480.746
1490.923
150.759
1500.673
1510.932
1520.807
1530.272
1540.0864
1550.424
1560.862
1570.605
1580.843
1590.771
160.921
1600.789
1610.878
1620.842
1630.727
1640.765
1650.637
1660.309
1670.883
1680.355
1690.271
170.703
180.0909
190.861
20.0991
200.203
210.376
220.441
230.00326
240.903
250.642
260.0552
270.294
280.987
290.16
30.971
300.759
310.673
320.287
330.263
340.468
350.98
360.158
370.921
380.841
390.897
40.846
400.00883
410.0562
420.328
430.897
440.0782
450.963
460.745
470.279
480.502
490.957
50.374
500.179
510.842
520.457
530.186
540.773
550.233
560.829
570.988
580.563
590.734
60.308
600.347
610.106
620.214
630.889
640.947
650.052
660.0106
670.303
680.143
690.364
70.0454
700.11
710.411
720.159
730.0784
740.0596
750.00129
760.7
770.898
780.018
790.0445
80.633
800.0351
810.201
820.0837
830.138
840.115
850.0412
860.637
870.0341
880.473
890.781
90.0732
900.393
910.00927
920.0429
930.751
940.043
950.0013
960.372
970.655
980.781
990.287



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12329


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0100599 (Hep-G2 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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