FF:10820-111C1: Difference between revisions

Latest revision as of 15:07, 3 June 2020

Name:	hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3
Species:	Human (Homo sapiens)
Library ID:	CNhs12330
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	male
age	15
cell type	hepatocyte
cell line	HepG2
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005359

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12330		CAGE		DRX007907		DRR008779

Accession ID Hg19

Library id		BAM		CTSS
CNhs12330		DRZ000204		DRZ001589

Accession ID Hg38

Library id		BAM		CTSS
CNhs12330		DRZ011554		DRZ012939

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.182
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.584
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0.241
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.00483
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.996
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0162
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0802
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.187
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0492
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0549
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0.0283
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	1.016921e-5
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0.407
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.541
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.108
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0283
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0.0283
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0.714
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.273
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12330

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00862
MA0003.1	MA0003.1	0.678
MA0004.1	MA0004.1	0.0891
MA0006.1	MA0006.1	0.563
MA0007.1	MA0007.1	0.509
MA0009.1	MA0009.1	0.579
MA0014.1	MA0014.1	0.233
MA0017.1	MA0017.1	1.70249e-25
MA0018.2	MA0018.2	0.0919
MA0019.1	MA0019.1	0.718
MA0024.1	MA0024.1	1.39105e-6
MA0025.1	MA0025.1	0.621
MA0027.1	MA0027.1	0.462
MA0028.1	MA0028.1	1.50789e-5
MA0029.1	MA0029.1	0.00535
MA0030.1	MA0030.1	0.413
MA0031.1	MA0031.1	0.0374
MA0035.2	MA0035.2	0.0165
MA0038.1	MA0038.1	0.0879
MA0039.2	MA0039.2	0.0928
MA0040.1	MA0040.1	0.34
MA0041.1	MA0041.1	0.505
MA0042.1	MA0042.1	0.296
MA0043.1	MA0043.1	0.577
MA0046.1	MA0046.1	3.32252e-78
MA0047.2	MA0047.2	7.88276e-5
MA0048.1	MA0048.1	0.0205
MA0050.1	MA0050.1	0.176
MA0051.1	MA0051.1	0.126
MA0052.1	MA0052.1	0.0117
MA0055.1	MA0055.1	3.04375e-5
MA0057.1	MA0057.1	0.958
MA0058.1	MA0058.1	0.0227
MA0059.1	MA0059.1	0.0603
MA0060.1	MA0060.1	1.74215e-16
MA0061.1	MA0061.1	9.89567e-4
MA0062.2	MA0062.2	5.28841e-5
MA0065.2	MA0065.2	6.58169e-9
MA0066.1	MA0066.1	0.657
MA0067.1	MA0067.1	0.00379
MA0068.1	MA0068.1	0.523
MA0069.1	MA0069.1	0.701
MA0070.1	MA0070.1	0.317
MA0071.1	MA0071.1	0.307
MA0072.1	MA0072.1	0.327
MA0073.1	MA0073.1	0.625
MA0074.1	MA0074.1	0.58
MA0076.1	MA0076.1	9.29702e-6
MA0077.1	MA0077.1	0.0663
MA0078.1	MA0078.1	0.518
MA0079.2	MA0079.2	0.637
MA0080.2	MA0080.2	8.10309e-9
MA0081.1	MA0081.1	0.138
MA0083.1	MA0083.1	0.0333
MA0084.1	MA0084.1	0.409
MA0087.1	MA0087.1	0.328
MA0088.1	MA0088.1	0.0704
MA0090.1	MA0090.1	0.945
MA0091.1	MA0091.1	0.055
MA0092.1	MA0092.1	0.0658
MA0093.1	MA0093.1	0.0425
MA0099.2	MA0099.2	1.53766e-9
MA0100.1	MA0100.1	0.0989
MA0101.1	MA0101.1	0.136
MA0102.2	MA0102.2	0.296
MA0103.1	MA0103.1	0.0402
MA0104.2	MA0104.2	0.00973
MA0105.1	MA0105.1	0.00457
MA0106.1	MA0106.1	0.0168
MA0107.1	MA0107.1	0.011
MA0108.2	MA0108.2	0.0687
MA0111.1	MA0111.1	0.685
MA0112.2	MA0112.2	0.761
MA0113.1	MA0113.1	0.971
MA0114.1	MA0114.1	2.22196e-35
MA0115.1	MA0115.1	1.7495e-8
MA0116.1	MA0116.1	0.568
MA0117.1	MA0117.1	0.356
MA0119.1	MA0119.1	0.0877
MA0122.1	MA0122.1	0.284
MA0124.1	MA0124.1	0.419
MA0125.1	MA0125.1	0.29
MA0131.1	MA0131.1	0.153
MA0135.1	MA0135.1	0.463
MA0136.1	MA0136.1	1.35167e-4
MA0137.2	MA0137.2	0.303
MA0138.2	MA0138.2	0.463
MA0139.1	MA0139.1	0.00806
MA0140.1	MA0140.1	0.0131
MA0141.1	MA0141.1	1.12636e-4
MA0142.1	MA0142.1	0.936
MA0143.1	MA0143.1	0.866
MA0144.1	MA0144.1	0.211
MA0145.1	MA0145.1	0.182
MA0146.1	MA0146.1	0.00332
MA0147.1	MA0147.1	0.0126
MA0148.1	MA0148.1	1.71258e-4
MA0149.1	MA0149.1	0.305
MA0150.1	MA0150.1	0.00788
MA0152.1	MA0152.1	0.223
MA0153.1	MA0153.1	1.86112e-49
MA0154.1	MA0154.1	0.308
MA0155.1	MA0155.1	0.942
MA0156.1	MA0156.1	0.0241
MA0157.1	MA0157.1	0.25
MA0159.1	MA0159.1	0.214
MA0160.1	MA0160.1	0.0133
MA0162.1	MA0162.1	0.901
MA0163.1	MA0163.1	0.0514
MA0164.1	MA0164.1	0.346
MA0258.1	MA0258.1	0.652
MA0259.1	MA0259.1	0.037

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12330

Novel motif	Logo	P-value
1	1	0.392
10	10	0.605
100	100	0.0273
101	101	0.554
102	102	0.121
103	103	0.762
104	104	0.648
105	105	0.911
106	106	0.0115
107	107	0.527
108	108	0.494
109	109	0.0871
11	11	0.712
110	110	0.884
111	111	0.795
112	112	0.185
113	113	0.0641
114	114	0.435
115	115	0.664
116	116	0.889
117	117	0.119
118	118	0.262
119	119	0.837
12	12	0.55
120	120	0.477
121	121	0.616
122	122	0.948
123	123	0.64
124	124	0.225
125	125	0.486
126	126	0.491
127	127	0.389
128	128	0.0253
129	129	0.952
13	13	7.21401e-5
130	130	0.802
131	131	0.0336
132	132	0.545
133	133	0.0116
134	134	0.438
135	135	0.0649
136	136	0.0153
137	137	0.00473
138	138	0.426
139	139	0.237
14	14	0.0665
140	140	0.607
141	141	0.223
142	142	0.729
143	143	0.153
144	144	0.472
145	145	0.897
146	146	0.926
147	147	0.523
148	148	0.759
149	149	0.645
15	15	0.977
150	150	0.502
151	151	0.706
152	152	0.914
153	153	0.425
154	154	0.152
155	155	0.298
156	156	0.926
157	157	0.698
158	158	0.949
159	159	0.6
16	16	0.693
160	160	0.771
161	161	0.878
162	162	0.92
163	163	0.656
164	164	0.85
165	165	0.679
166	166	0.338
167	167	0.781
168	168	0.234
169	169	0.3
17	17	0.727
18	18	0.0521
19	19	0.839
2	2	0.1
20	20	0.21
21	21	0.455
22	22	0.521
23	23	0.00286
24	24	0.999
25	25	0.625
26	26	0.0751
27	27	0.235
28	28	0.871
29	29	0.203
3	3	0.877
30	30	0.736
31	31	0.817
32	32	0.17
33	33	0.321
34	34	0.487
35	35	0.981
36	36	0.137
37	37	0.714
38	38	0.733
39	39	0.873
4	4	0.876
40	40	0.00794
41	41	0.0544
42	42	0.294
43	43	0.907
44	44	0.222
45	45	0.996
46	46	0.628
47	47	0.289
48	48	0.515
49	49	0.867
5	5	0.346
50	50	0.178
51	51	0.712
52	52	0.403
53	53	0.498
54	54	0.838
55	55	0.331
56	56	0.8
57	57	0.941
58	58	0.705
59	59	0.536
6	6	0.352
60	60	0.258
61	61	0.117
62	62	0.233
63	63	0.919
64	64	0.856
65	65	0.0553
66	66	0.00842
67	67	0.318
68	68	0.148
69	69	0.459
7	7	0.0306
70	70	0.13
71	71	0.462
72	72	0.0864
73	73	0.153
74	74	0.0631
75	75	8.31018e-4
76	76	0.657
77	77	0.978
78	78	0.015
79	79	0.0183
8	8	0.918
80	80	0.033
81	81	0.137
82	82	0.078
83	83	0.0907
84	84	0.11
85	85	0.0463
86	86	0.894
87	87	0.0725
88	88	0.482
89	89	0.57
9	9	0.0589
90	90	0.451
91	91	0.0114
92	92	0.0712
93	93	0.986
94	94	0.0673
95	95	0.0029
96	96	0.295
97	97	0.625
98	98	0.689
99	99	0.202

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12330

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100599 Hep-G2 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0100599 (Hep-G2 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005359
+|accession_numbers=CAGE;DRX007907;DRR008779;DRZ000204;DRZ001589;DRZ011554;DRZ012939
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.55!354.14!PEG3;;chr6:1312325..1312340,+!p1@FOXQ1!2.35!352.52!FOXQ1;;chr1:27240455..27240474,-!p1@NR0B2!2.15!141.48!NR0B2;;chr2:171571827..171571853,+!p1@SP5!2.04!108.18!SP5;;chrX:131624056..131624069,-!p2@MBNL3!1.98!127.80!MBNL3;;chr17:53342311..53342400,+!p1@HLF!1.94!99.15!HLF;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.93!84.05!SEBOX;;chr7:73038839..73038862,-!p1@MLXIPL!1.92!82.43!MLXIPL;;chr17:53344945..53344977,+!p2@HLF!1.90!77.92!HLF;;chr17:41622765..41622821,-!p2@ETV4!1.88!112.16!ETV4;;chr1:214161272..214161322,+!p1@PROX1!1.87!100.77!PROX1;;chr20:43029862..43029900,+!p1@HNF4A!1.87!73.07!HNF4A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.81!64.30!SEBOX;;chr12:100867627..100867652,+!p1@NR1H4!1.78!59.72!NR1H4;;chr17:41622731..41622764,-!p5@ETV4!1.74!53.79!ETV4;;chr14:38064429..38064486,-!p1@FOXA1!1.70!49.47!FOXA1;;chr20:22564895..22564910,-!p1@FOXA2!1.66!44.62!FOXA2;;chr17:53344980..53345011,+!p3@HLF!1.65!43.95!HLF;;chrX:131547625..131547644,-!p4@MBNL3!1.57!36.40!MBNL3;;chr12:66218183..66218209,+!p4@HMGA2!1.54!63.97!HMGA2;;chr17:70117153..70117174,+!p1@SOX9!1.53!320.03!SOX9;;chr20:42984330..42984364,+!p2@HNF4A!1.52!32.15!HNF4A;;chr2:171571796..171571808,+!p4@SP5!1.52!32.08!SP5;;chr1:226411361..226411366,+!p1@MIXL1!1.48!29.19!MIXL1;;chr2:171572786..171572840,+!p2@SP5!1.45!27.43!SP5;;chr8:11561684..11561751,+!p1@GATA4!1.44!26.42!GATA4;;chr19:2867325..2867348,+!p1@ZNF556!1.43!25.75!ZNF556;;chr19:33793430..33793447,-!p1@CEBPA!1.40!98.88!CEBPA;;chr10:94449703..94449718,+!p1@HHEX!1.39!89.24!HHEX;;chr12:66218212..66218244,+!p5@HMGA2!1.38!32.83!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!1.37!93.69!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.37!59.72!HMGA2;;chr2:177053386..177053402,+!p1@HOXD1!1.36!21.97!HOXD1;;chr12:66218003..66218018,+!p9@HMGA2!1.35!26.15!HMGA2;;chr15:53082521..53082549,-!p1@ONECUT1!1.34!20.69!ONECUT1;;chr12:100867653..100867677,+!p2@NR1H4!1.33!20.15!NR1H4;;chr11:61520075..61520136,+!p1@C11orf9!1.32!41.52!C11orf9;;chr20:62680984..62680999,-!p1@SOX18!1.29!24.47!SOX18;;chr2:25475120..25475176,-!p2@DNMT3A!1.28!24.20!DNMT3A;;chr2:171571931..171571959,+!p3@SP5!1.28!18.06!SP5;;chr12:24102576..24102623,-!p2@SOX5!1.28!17.93!SOX5;;chr8:76319876..76319926,+!p1@HNF4G!1.27!17.59!HNF4G;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.29!PITX1;;chr17:41622925..41622976,-!p3@ETV4!1.26!25.34!ETV4;;chr19:46367576..46367592,+!p1@FOXA3!1.26!17.32!FOXA3;;chrX:131547596..131547609,-!p10@MBNL3!1.25!16.58!MBNL3;;chr16:52581025..52581072,-!p1@TOX3!1.23!16.18!TOX3;;chr10:51572408..51572454,+!p3@NCOA4!1.22!89.17!NCOA4;;chr9:127269661..127269719,-!p1@NR5A1!1.22!15.77!NR5A1;;chr2:63277948..63277974,+!p1@OTX1!1.20!14.69!OTX1;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.49!KDM5D;;chr12:66218598..66218645,+!p2@HMGA2!1.18!65.04!HMGA2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.18!14.22!SEBOX;;chr12:66218152..66218174,+!p10@HMGA2!1.17!14.76!HMGA2;;chr1:214161328..214161348,+!p2@PROX1!1.17!13.75!PROX1;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.66!NFATC2;;chr12:66218836..66218888,+!p1@HMGA2!1.11!111.42!HMGA2;;chr20:43030002..43030028,+!p3@HNF4A!1.08!11.05!HNF4A;;chr2:113977697..113977733,-!p6@PAX8!1.08!10.92!PAX8;;chr17:41623667..41623682,-!p8@ETV4!1.07!11.66!ETV4;;chr2:25475094..25475112,-!p3@DNMT3A!1.04!10.04!DNMT3A;;chr3:141150883..141150961,+!p6@ZBTB38!1.03!9.64!ZBTB38;;chr12:66357214..66357233,+!p13@HMGA2!1.03!9.64!HMGA2;;chr16:68118689..68118733,+!p3@NFATC3!1.02!24.27!NFATC3;;chr19:926001..926046,+!p1@ARID3A!1.01!32.83!ARID3A;;chr12:66218378..66218401,+!p6@HMGA2!1.00!14.09!HMGA2;;chrX:128657457..128657475,-!p1@SMARCA1!0.98!100.23!SMARCA1;;chr14:38064590..38064606,-!p2@FOXA1!0.98!8.63!FOXA1;;chr12:121416340..121416360,+!p1@HNF1A!0.98!8.49!HNF1A;;chr6:7108179..7108199,+!p4@RREB1!0.97!17.19!RREB1;;chr5:134369879..134369898,-!p2@PITX1!0.97!8.43!PITX1;;chr20:22566120..22566136,-!p4@FOXA2!0.97!8.43!FOXA2;;chr16:54320101..54320125,-!p4@IRX3!0.96!11.66!IRX3;;chr8:37963466..37963506,+!p3@ASH2L!0.96!10.31!ASH2L;;chr17:41622834..41622883,-!p6@ETV4!0.96!9.98!ETV4;;chr19:48773337..48773339,+!p2@ZNF114!0.96!8.02!ZNF114;;chr12:24103844..24103880,-!p3@SOX5!0.95!7.89!SOX5;;chr20:42295713..42295738,+!p2@MYBL2!0.92!44.82!MYBL2;;chr2:46524897..46524911,+!p2@EPAS1!0.92!21.37!EPAS1;;chr10:94449675..94449694,+!p2@HHEX!0.92!20.49!HHEX;;chr19:926055..926068,+!p2@ARID3A!0.91!15.91!ARID3A;;chr18:55102598..55102623,+!p1@ONECUT2!0.91!7.14!ONECUT2;;chr12:100867736..100867750,+!p4@NR1H4!0.90!7.01!NR1H4;;chr1:201979743..201979762,+!p1@ELF3!0.90!6.88!ELF3;;chr20:22565370..22565388,-!p2@FOXA2!0.90!6.88!FOXA2;;chr12:7079780..7079791,-!p2@PHB2!0.89!36.87!PHB2;;chr1:214161358..214161377,+!p3@PROX1!0.89!6.74!PROX1;;chr10:97889464..97889494,+!p3@ZNF518A!0.88!12.74!ZNF518A;;chrX:131623982..131624011,-!p6@MBNL3!0.88!9.71!MBNL3;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.88!9.57!TGIF2;;chr2:171572699..171572713,+!p7@SP5!0.88!6.67!SP5;;chr18:6414884..6414942,-!p1@L3MBTL4!0.87!8.22!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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10820-111C1
 |is_a=EFO:0002091;;FF:0000210;;FF:0100599
 |is_obsolete=
+|library_id=CNhs12330
+|library_id_phase_based=2:CNhs12330
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10820
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10820
 |name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12330,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 78: @@
 |rna_weight_ug=57.042
 |sample_age=15
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=HepG2
@@ Line 84: / Line 100: @@
 |top_motifs=HNF4A_NR2F1,2:4.79489922739;HNF1A:4.15674580962;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.70886331688;FOXA2:3.28094513886;LEF1_TCF7_TCF7L1,2:2.19703770575;bHLH_family:2.14861616564;FOX{F1,F2,J1}:1.86324120674;NFY{A,B,C}:1.66870148087;NR6A1:1.53232542716;ONECUT1,2:1.47765464728;E2F1..5:1.47592317324;ELK1,4_GABP{A,B1}:1.23872793575;NR1H4:1.23461280756;ADNP_IRX_SIX_ZHX:1.22934199989;ZNF143:1.22412043089;YY1:1.20862518294;EN1,2:1.06665004701;SOX{8,9,10}:1.06174733679;PBX1:1.04782136736;AIRE:0.98829447571;GFI1:0.98484139588;NRF1:0.920649391277;NR5A1,2:0.874768753787;SNAI1..3:0.856303376606;PAX3,7:0.837744510058;RORA:0.79861321017;NKX3-2:0.771750133057;TOPORS:0.759765491852;MYB:0.697958246999;SOX2:0.683448595365;LHX3,4:0.662898727197;ZEB1:0.65942116707;CEBPA,B_DDIT3:0.613502778284;RXRA_VDR{dimer}:0.586732412275;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.575912015516;FOXM1:0.567846136374;ALX4:0.497064052524;ESRRA:0.47231716769;FOX{D1,D2}:0.450645710745;PITX1..3:0.425379426971;TP53:0.423384381828;TFDP1:0.410184480164;EBF1:0.344287564557;MYOD1:0.329055318413;HIC1:0.324836155651;AR:0.320502696575;XCPE1{core}:0.300921503577;FOXD3:0.299343646739;HLF:0.253034137309;NFIL3:0.247875662216;POU6F1:0.19377342825;PPARG:0.181084785694;ELF1,2,4:0.157234911242;CUX2:0.151659047194;FOXP1:0.150339252802;STAT5{A,B}:0.118364349087;DBP:0.111274202656;PAX4:0.102549210155;MTE{core}:0.0843819045578;GATA6:0.0704830260118;SP1:0.0676730424047;MAZ:0.0574476049822;ZFP161:0.0432753769729;BREu{core}:0.034747475777;NKX3-1:0.0288551279048;UFEwm:-0.00115933343807;SOX5:-0.00375613758848;RBPJ:-0.0136885623597;TFCP2:-0.028940951366;TFAP2{A,C}:-0.0526428295901;ARID5B:-0.059325773711;SREBF1,2:-0.0727296082073;PAX2:-0.0964500460761;FOXQ1:-0.0971982231484;SOX17:-0.0997918067386;EVI1:-0.135058742636;T:-0.136089760285;CDC5L:-0.141628942961;PAX1,9:-0.1440933795;VSX1,2:-0.14497351687;TBX4,5:-0.152203793972;RXR{A,B,G}:-0.156010726229;NFKB1_REL_RELA:-0.16415423961;KLF4:-0.165227177282;STAT2,4,6:-0.165517342186;HOXA9_MEIS1:-0.189971082165;MED-1{core}:-0.205918083093;AHR_ARNT_ARNT2:-0.214634109497;LMO2:-0.233844518225;GLI1..3:-0.235065286609;PATZ1:-0.237935863777;TEAD1:-0.259816226482;POU3F1..4:-0.261919752527;ATF5_CREB3:-0.292632998736;MTF1:-0.303324225714;HOX{A5,B5}:-0.343292041025;STAT1,3:-0.346937591822;TLX1..3_NFIC{dimer}:-0.361979596959;TAL1_TCF{3,4,12}:-0.378302518924;ATF6:-0.385324785709;FOXN1:-0.389810556209;FOSL2:-0.404244924148;BPTF:-0.41064733055;ZNF148:-0.418390428381;NFE2:-0.421036518576;ESR1:-0.444171029788;CREB1:-0.447163137058;ZNF423:-0.449556038679;IRF7:-0.455765145368;DMAP1_NCOR{1,2}_SMARC:-0.45683060099;HOX{A4,D4}:-0.459790075376;HOX{A6,A7,B6,B7}:-0.467895264854;FOXO1,3,4:-0.470025126306;IKZF2:-0.474506016029;HES1:-0.50934388326;OCT4_SOX2{dimer}:-0.509672867534;POU2F1..3:-0.51370714317;REST:-0.521637185438;NKX6-1,2:-0.539231323858;NKX2-3_NKX2-5:-0.54144901116;IRF1,2:-0.550938756496;GTF2A1,2:-0.554792862096;FOS_FOS{B,L1}_JUN{B,D}:-0.559606984292;GATA4:-0.571006511047;NFE2L2:-0.572143578382;NANOG{mouse}:-0.584195857887;BACH2:-0.596434522525;POU5F1:-0.598747557707;PAX5:-0.598789630056;NR3C1:-0.614164326561;RFX2..5_RFXANK_RFXAP:-0.625690901673;CDX1,2,4:-0.630608083756;ATF4:-0.637273290144;FOXP3:-0.638749043053;EGR1..3:-0.641133517395;ZBTB16:-0.644252011753;TBP:-0.6488505454;IKZF1:-0.654981581328;PDX1:-0.656384877817;SPI1:-0.659815756185;ATF2:-0.660971287191;SPIB:-0.66265416194;PAX8:-0.663390241483;XBP1:-0.663461946158;RREB1:-0.672884714426;ALX1:-0.676959472369;NFIX:-0.706670308976;TFAP2B:-0.738307727604;MYBL2:-0.740243696716;SRF:-0.787934317686;NHLH1,2:-0.78864316682;HSF1,2:-0.793263623152;MEF2{A,B,C,D}:-0.803685989872;RFX1:-0.842381476787;NKX2-2,8:-0.847533213266;GTF2I:-0.851049930485;JUN:-0.851634836205;HMGA1,2:-0.85549949622;HAND1,2:-0.857144696788;MYFfamily:-0.876758402729;RUNX1..3:-0.888916293547;GCM1,2:-0.891126046233;ZBTB6:-0.943957369801;CRX:-1.00956012356;ETS1,2:-1.04814527658;ZIC1..3:-1.0537545522;POU1F1:-1.0574304188;TFAP4:-1.05945828406;MAFB:-1.05979860937;NKX2-1,4:-1.06799278697;GFI1B:-1.07202974465;PRDM1:-1.0785146347;NFE2L1:-1.08347923675;ZNF384:-1.09271843507;FOX{I1,J2}:-1.1022475061;PAX6:-1.14364054218;SPZ1:-1.1457298066;EP300:-1.1475564127;MZF1:-1.21280396701;PRRX1,2:-1.26983335219;NFATC1..3:-1.28640399381;NANOG:-1.32158074644;TGIF1:-1.41415422759;ZNF238:-1.44425329126;TEF:-1.53566371064;HBP1_HMGB_SSRP1_UBTF:-1.60651166154;GZF1:-1.66471205192;TLX2:-1.74346414584;SMAD1..7,9:-1.77536123114;HIF1A:-1.79732203238;FOXL1:-1.93984636463;HMX1:-1.94158043128
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10820-111C1;search_select_hide=table117:FF:10820-111C1
 }}

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FF:10820-111C1: Difference between revisions

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Latest revision as of 15:07, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0