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{{f5samples
{{f5samples
|id=FF:10834-111D6
|DRA_sample_Accession=CAGE@SAMD00004814
|name=acute myeloid leukemia (FAB M5) cell line:U-937 DE-4
|accession_numbers=CAGE;DRX007816;DRR008688;DRZ000113;DRZ001498;DRZ011463;DRZ012848
|sample_id=10834
|ancestors_in_anatomy_facet=
|rna_tube_id=111D6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|rna_box=111
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
|rna_position=D6
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB0435
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.35!220.79!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.16!145.17!SPI1;;chr1:92949331..92949377,-!p2@GFI1!2.01!100.23!GFI1;;chr7:50344289..50344323,+!p1@IKZF1!1.98!93.59!IKZF1;;chr6:135502408..135502459,+!p2@MYB!1.93!95.94!MYB;;chr6:135502501..135502546,+!p1@MYB!1.84!80.89!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.76!228.80!CEBPA;;chr7:137620650..137620677,-!p3@CREB3L2!1.74!53.54!CREB3L2;;chr7:115670804..115670825,-!p1@TFEC!1.72!51.58!TFEC;;chr12:54694758..54694805,-!p1@NFE2!1.71!60.77!NFE2;;chr21:34442439..34442455,+!p1@OLIG1!1.70!49.24!OLIG1;;chr19:13213662..13213686,-!p1@LYL1!1.69!69.56!LYL1;;chr14:75988771..75988826,+!p1@BATF!1.67!59.98!BATF;;chr16:85932760..85932775,+!p1@IRF8!1.61!39.66!IRF8;;chr1:92951607..92951661,-!p1@GFI1!1.58!37.12!GFI1;;chr7:27224842..27224872,-!p1@HOXA11!1.57!35.95!HOXA11;;chr12:54778471..54778528,-!p1@ZNF385A!1.56!35.37!ZNF385A;;chr12:54694807..54694832,-!p3@NFE2!1.53!33.22!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.44!26.57!CREB3L2;;chr7:27205136..27205164,-!p1@HOXA9!1.44!26.38!HOXA9;;chr7:27224795..27224840,-!p2@HOXA11!1.38!23.06!HOXA11;;chr21:34442540..34442560,+!p2@OLIG1!1.32!19.73!OLIG1;;chr10:31288398..31288455,-!p2@ZNF438!1.29!21.49!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.29!18.56!PLEK;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.80!HOXA10;;chr11:47400062..47400077,-!p2@SPI1!1.22!15.63!SPI1;;chr2:60780607..60780624,-!p2@BCL11A!1.20!45.13!BCL11A;;chr2:239148671..239148686,-!p1@HES6!1.18!51.97!HES6;;chr2:172949484..172949522,+!p1@DLX1!1.18!14.26!DLX1;;chr19:13213954..13214021,-!p4@LYL1!1.17!13.68!LYL1;;chr12:54694653..54694672,-!p2@NFE2!1.17!13.68!NFE2;;chr13:72441315..72441454,-!p1@DACH1!1.14!25.60!DACH1;;chr2:100759037..100759058,-!p2@AFF3!1.14!12.90!AFF3;;chr7:27192185..27192209,-!p1@HOXA3!1.14!12.70!HOXA3;;chr7:128577972..128578047,+!p1@IRF5!1.13!19.93!IRF5;;chr2:200322654..200322707,-!p2@SATB2!1.13!18.17!SATB2;;chr6:135502472..135502489,+!p3@MYB!1.12!12.11!MYB;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.32!ZEB2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.10!11.53!HOXC5;;chr2:145277640..145277771,-!p1@ZEB2!1.08!147.52!ZEB2;;chr10:31288370..31288393,-!p3@ZNF438!1.08!11.14!ZNF438;;chr11:19262461..19262476,-!p5@E2F8!1.08!11.14!E2F8;;chr1:92952473..92952489,-!p3@GFI1!1.08!11.14!GFI1;;chr7:27205106..27205134,-!p2@HOXA9!1.08!10.94!HOXA9;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.55!IKZF1;;chr2:200320768..200320800,-!p4@SATB2!1.06!10.36!SATB2;;chr3:18486354..18486377,-!p2@SATB1!1.05!12.90!SATB1;;chr2:60778035..60778060,-!p4@BCL11A!1.05!12.31!BCL11A;;chr11:47399996..47400014,-!p4@SPI1!1.02!9.57!SPI1;;chr6:135516877..135516900,+!p5@MYB!1.01!9.18!MYB;;chr11:128563948..128564003,+!p1@FLI1!1.00!111.76!FLI1;;chr7:50343634..50343717,+!p2@IKZF1!1.00!8.99!IKZF1;;chr1:92949505..92949543,-!p5@GFI1!1.00!8.99!GFI1;;chr20:42295745..42295765,+!p1@MYBL2!0.98!142.44!MYBL2;;chr19:13213704..13213726,-!p3@LYL1!0.98!11.33!LYL1;;chr11:19263160..19263176,-!p1@E2F8!0.95!9.38!E2F8;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.82!SPI1;;chr2:100759010..100759035,-!p1@AFF3!0.95!7.82!AFF3;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.09!MYBL2;;chr2:60780753..60780800,-!p1@BCL11A!0.94!38.88!BCL11A;;chr7:27239703..27239715,-!p1@HOXA13!0.94!7.62!HOXA13;;chr14:75988831..75988847,+!p2@BATF!0.90!7.03!BATF;;chr13:79177703..79177729,-!p2@POU4F1!0.90!7.03!POU4F1;;chr13:41593425..41593480,-!p1@ELF1!0.88!44.55!ELF1;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.81!RUNX1;;chr1:23857698..23857733,-!p1@E2F2!0.88!12.50!E2F2;;chr2:102091566..102091581,-!p1@RFX8!0.87!6.45!RFX8;;chr11:47399947..47399961,-!p3@SPI1!0.87!6.45!SPI1;;chr9:77112244..77112262,+!p1@RORB!0.86!7.03!RORB;;chr11:19263192..19263222,-!p2@E2F8!0.85!7.62!E2F8;;chr12:48298785..48298828,-!p1@VDR!0.82!32.04!VDR;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.69!BRCA1;;chr8:145669791..145669834,-!p1@TONSL!0.82!17.19!TONSL;;chr2:200322711..200322722,-!p10@SATB2!0.82!5.67!SATB2;;chr16:54320675..54320715,-!p1@IRX3!0.79!11.92!IRX3;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.06!SNAI3;;chr6:144385698..144385742,-!p2@PLAGL1!0.78!6.25!PLAGL1;;chr6:135513595..135513617,+!p4@MYB!0.78!5.08!MYB;;chr11:19262421..19262455,-!p3@E2F8!0.78!5.08!E2F8;;chr13:79177674..79177701,-!p1@POU4F1!0.77!4.88!POU4F1;;chr6:135516909..135516925,+!p6@MYB!0.77!4.88!MYB;;chr1:25256756..25256774,-!p1@RUNX3!0.76!9.38!RUNX3;;chr6:20402102..20402152,+!p1@E2F3!0.74!20.32!E2F3;;chr11:47400032..47400043,-!p5@SPI1!0.74!4.49!SPI1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.74!4.49!HOXC5;;chr2:113977697..113977733,-!p6@PAX8!0.74!4.49!PAX8;;chr17:41623692..41623715,-!p1@ETV4!0.73!20.52!ETV4;;chr2:66662281..66662308,+!p1@MEIS1!0.72!16.22!MEIS1;;chr19:47538560..47538591,+!p2@NPAS1!0.72!4.30!NPAS1;;chr20:50159198..50159299,-!p1@NFATC2!0.71!6.25!NFATC2;;chr10:31146746..31146755,-!p14@ZNF438!0.71!4.10!ZNF438;;chr12:54380404..54380433,+!p3@HOXC10!0.71!4.10!HOXC10;;chr12:54694738..54694749,-!p5@NFE2!0.71!4.10!NFE2;;chr5:1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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000049,CL:0000134
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=37
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.13
|rna_od260/280=2.08
|sample_cell_type=monoblast
|sample_cell_line=U-937 DE-4
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=acute myeloid leukemia (FAB M5)
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=126.3906
|rna_concentration=1.40434
|sample_note=
|profile_hcage=CNhs13058,LSID1000,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000566,CL:0000723,CL:0000763,CL:0000837,CL:0000988,CL:0002032,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:0050686,DOID:0060083,DOID:1240,DOID:14566,DOID:162,DOID:2531,DOID:4,DOID:8692
|sample_description=
|fonse_cell_line=FF:0101035
|fonse_cell_line=FF:0101035
|fonse_cell_line_closure=FF:0101035
|fonse_cell_line_closure=FF:0101035
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=111
|rna_catalog_number=
|rna_concentration=1.40434
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.13
|rna_od260/280=2.08
|rna_position=D6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=111D6
|rna_weight_ug=126.3906
|sample_age=37
|sample_category=cell lines
|sample_cell_catalog=RCB0435
|sample_cell_line=U-937 DE-4
|sample_cell_lot=
|sample_cell_type=monoblast
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=acute myeloid leukemia (FAB M5)
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.54047557257489e-235!GO:0043227;membrane-bound organelle;3.01065119591071e-203!GO:0043231;intracellular membrane-bound organelle;8.00813577311593e-203!GO:0043226;organelle;6.96936505672051e-192!GO:0043229;intracellular organelle;3.7345247267152e-191!GO:0005737;cytoplasm;6.50986868909426e-168!GO:0044422;organelle part;9.24460005530634e-165!GO:0044446;intracellular organelle part;1.06749631738735e-162!GO:0044444;cytoplasmic part;2.67805513556568e-125!GO:0032991;macromolecular complex;7.37776618649424e-124!GO:0030529;ribonucleoprotein complex;1.35276826001033e-106!GO:0044237;cellular metabolic process;4.90597418166271e-102!GO:0044428;nuclear part;9.63578482634952e-100!GO:0044238;primary metabolic process;7.45576856861569e-96!GO:0043233;organelle lumen;2.36962535075331e-93!GO:0031974;membrane-enclosed lumen;2.36962535075331e-93!GO:0003723;RNA binding;6.82634666979475e-92!GO:0005739;mitochondrion;3.69703214434903e-89!GO:0005634;nucleus;4.69962371860357e-87!GO:0043170;macromolecule metabolic process;5.72694441679307e-86!GO:0006396;RNA processing;2.74414498358897e-71!GO:0006412;translation;2.59910199771633e-65!GO:0044429;mitochondrial part;1.01964596062768e-61!GO:0043234;protein complex;2.42386892433382e-61!GO:0005840;ribosome;1.20204583950799e-60!GO:0031981;nuclear lumen;8.36498681155675e-57!GO:0009058;biosynthetic process;3.69479321556214e-55!GO:0005515;protein binding;5.10076690045461e-55!GO:0031967;organelle envelope;1.06499515877195e-54!GO:0044249;cellular biosynthetic process;1.34493184176397e-54!GO:0031975;envelope;2.71210748817057e-54!GO:0003735;structural constituent of ribosome;1.71960746094755e-53!GO:0009059;macromolecule biosynthetic process;2.2383340509647e-50!GO:0019538;protein metabolic process;1.48156083165165e-49!GO:0016071;mRNA metabolic process;2.2387295800063e-49!GO:0006259;DNA metabolic process;4.52509460084692e-48!GO:0008380;RNA splicing;9.13785589659909e-47!GO:0043283;biopolymer metabolic process;1.07980297529943e-46!GO:0031090;organelle membrane;3.35304903929932e-46!GO:0044267;cellular protein metabolic process;4.09050974479755e-46!GO:0044260;cellular macromolecule metabolic process;5.07642308248586e-46!GO:0033279;ribosomal subunit;1.3172381747233e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.68080777346306e-45!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.45438202942023e-44!GO:0006397;mRNA processing;4.56545512611332e-44!GO:0016043;cellular component organization and biogenesis;1.18617754611565e-41!GO:0010467;gene expression;3.56102582927754e-40!GO:0005829;cytosol;6.16532854200843e-39!GO:0005740;mitochondrial envelope;1.16615679751614e-38!GO:0033036;macromolecule localization;1.49875522451849e-38!GO:0006996;organelle organization and biogenesis;3.03091054085378e-37!GO:0019866;organelle inner membrane;3.32147378519561e-37!GO:0015031;protein transport;8.04723238032486e-36!GO:0031966;mitochondrial membrane;8.04723238032486e-36!GO:0043228;non-membrane-bound organelle;1.75171327488897e-35!GO:0043232;intracellular non-membrane-bound organelle;1.75171327488897e-35!GO:0065003;macromolecular complex assembly;1.30435654171673e-34!GO:0045184;establishment of protein localization;2.24255596535019e-34!GO:0005743;mitochondrial inner membrane;2.32285137172978e-34!GO:0005681;spliceosome;2.37809293097081e-34!GO:0008104;protein localization;9.41334550835815e-34!GO:0007049;cell cycle;4.78419793300901e-33!GO:0005654;nucleoplasm;5.81179996321824e-33!GO:0000166;nucleotide binding;6.84868695796357e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.55014915193063e-31!GO:0046907;intracellular transport;2.14745068177252e-30!GO:0022607;cellular component assembly;3.29176062813361e-29!GO:0005694;chromosome;5.47648893612602e-29!GO:0006974;response to DNA damage stimulus;6.84197354736317e-29!GO:0031980;mitochondrial lumen;1.79670743477571e-27!GO:0005759;mitochondrial matrix;1.79670743477571e-27!GO:0044445;cytosolic part;2.1526298820794e-27!GO:0022402;cell cycle process;3.24164151313841e-27!GO:0000278;mitotic cell cycle;4.82057886380357e-27!GO:0006281;DNA repair;2.98933643261638e-26!GO:0044427;chromosomal part;8.28543008600992e-26!GO:0006886;intracellular protein transport;9.98628107468546e-26!GO:0044451;nucleoplasm part;1.36893834355499e-25!GO:0003676;nucleic acid binding;2.4517300985863e-25!GO:0005730;nucleolus;2.86643317387848e-25!GO:0006119;oxidative phosphorylation;2.90359108177982e-25!GO:0015934;large ribosomal subunit;3.03314855102035e-24!GO:0044455;mitochondrial membrane part;3.9121711316336e-24!GO:0051649;establishment of cellular localization;3.93163139580402e-24!GO:0022403;cell cycle phase;7.2593499568942e-24!GO:0051641;cellular localization;2.74734672109151e-23!GO:0042254;ribosome biogenesis and assembly;9.33208213818734e-23!GO:0000087;M phase of mitotic cell cycle;1.46326284965774e-22!GO:0015935;small ribosomal subunit;1.68440711671581e-22!GO:0022618;protein-RNA complex assembly;2.64497070978427e-22!GO:0016462;pyrophosphatase activity;3.21717023574576e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.28366802547329e-22!GO:0051276;chromosome organization and biogenesis;4.24531583416302e-22!GO:0007067;mitosis;4.4069575571364e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;4.4069575571364e-22!GO:0017076;purine nucleotide binding;5.6998722867436e-22!GO:0016874;ligase activity;5.74478559870601e-22!GO:0017111;nucleoside-triphosphatase activity;7.34177178011363e-22!GO:0032553;ribonucleotide binding;1.3844516932558e-21!GO:0032555;purine ribonucleotide binding;1.3844516932558e-21!GO:0005524;ATP binding;4.13674651153036e-21!GO:0030554;adenyl nucleotide binding;5.47582148576443e-21!GO:0032559;adenyl ribonucleotide binding;7.97786470556228e-21!GO:0000279;M phase;1.77272064058052e-20!GO:0006260;DNA replication;3.81886755579494e-20!GO:0006457;protein folding;6.94703225781039e-20!GO:0051301;cell division;1.3469922204139e-19!GO:0005746;mitochondrial respiratory chain;1.90906367810342e-19!GO:0051186;cofactor metabolic process;3.72362414566378e-19!GO:0005761;mitochondrial ribosome;3.92892477735006e-19!GO:0000313;organellar ribosome;3.92892477735006e-19!GO:0009719;response to endogenous stimulus;5.40970995086138e-19!GO:0044265;cellular macromolecule catabolic process;6.27556126645842e-19!GO:0016887;ATPase activity;1.24086263525517e-18!GO:0044248;cellular catabolic process;4.18371348992512e-18!GO:0006399;tRNA metabolic process;6.18954552187923e-18!GO:0042623;ATPase activity, coupled;7.83320751503458e-18!GO:0000398;nuclear mRNA splicing, via spliceosome;1.16053495075446e-17!GO:0000375;RNA splicing, via transesterification reactions;1.16053495075446e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.16053495075446e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.17003678338799e-17!GO:0008135;translation factor activity, nucleic acid binding;1.32197168815018e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.65682323522924e-17!GO:0050136;NADH dehydrogenase (quinone) activity;6.10037553221094e-17!GO:0003954;NADH dehydrogenase activity;6.10037553221094e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.10037553221094e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;7.92875627249904e-17!GO:0009057;macromolecule catabolic process;1.40588632858181e-16!GO:0043285;biopolymer catabolic process;1.52189501072396e-16!GO:0005635;nuclear envelope;1.84811907534441e-16!GO:0044453;nuclear membrane part;2.01564835218714e-16!GO:0006512;ubiquitin cycle;2.40090190120848e-16!GO:0006323;DNA packaging;2.92292311304789e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.55162676373232e-16!GO:0006364;rRNA processing;7.08738850506885e-16!GO:0031965;nuclear membrane;8.48972508427867e-16!GO:0012505;endomembrane system;1.34936817791574e-15!GO:0016604;nuclear body;1.51857224932574e-15!GO:0016072;rRNA metabolic process;1.77264689720504e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.01880339646448e-15!GO:0042773;ATP synthesis coupled electron transport;2.01880339646448e-15!GO:0006732;coenzyme metabolic process;3.03415663864832e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.984977938979e-15!GO:0006913;nucleocytoplasmic transport;5.69886457216853e-15!GO:0030964;NADH dehydrogenase complex (quinone);7.34163356126058e-15!GO:0045271;respiratory chain complex I;7.34163356126058e-15!GO:0005747;mitochondrial respiratory chain complex I;7.34163356126058e-15!GO:0006605;protein targeting;7.6345216843911e-15!GO:0003743;translation initiation factor activity;1.35782028764992e-14!GO:0016070;RNA metabolic process;1.38067003513576e-14!GO:0051169;nuclear transport;1.8752114570914e-14!GO:0050657;nucleic acid transport;1.99488715629767e-14!GO:0051236;establishment of RNA localization;1.99488715629767e-14!GO:0050658;RNA transport;1.99488715629767e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.15938560769802e-14!GO:0006403;RNA localization;2.47703242630716e-14!GO:0006413;translational initiation;3.21854372120167e-14!GO:0051082;unfolded protein binding;5.40398099859426e-14!GO:0048770;pigment granule;5.4258933477469e-14!GO:0042470;melanosome;5.4258933477469e-14!GO:0005643;nuclear pore;6.36365133116908e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.79336197061047e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.41651695344154e-13!GO:0019941;modification-dependent protein catabolic process;2.4959639934812e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.4959639934812e-13!GO:0044257;cellular protein catabolic process;3.64938845659173e-13!GO:0043412;biopolymer modification;5.55753108105572e-13!GO:0004386;helicase activity;6.86517494600064e-13!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.19690316520506e-13!GO:0004812;aminoacyl-tRNA ligase activity;7.19690316520506e-13!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.19690316520506e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.15634642727575e-13!GO:0009259;ribonucleotide metabolic process;1.31689996281997e-12!GO:0000785;chromatin;1.59140704247051e-12!GO:0043038;amino acid activation;1.70967164957383e-12!GO:0006418;tRNA aminoacylation for protein translation;1.70967164957383e-12!GO:0043039;tRNA aminoacylation;1.70967164957383e-12!GO:0065002;intracellular protein transport across a membrane;2.20039186073114e-12!GO:0051726;regulation of cell cycle;2.26029241576232e-12!GO:0006446;regulation of translational initiation;2.28838416521268e-12!GO:0051028;mRNA transport;2.54576394978077e-12!GO:0000074;regulation of progression through cell cycle;3.03671329712913e-12!GO:0006163;purine nucleotide metabolic process;3.07249456672911e-12!GO:0046930;pore complex;4.22433379776279e-12!GO:0009260;ribonucleotide biosynthetic process;6.0209093647127e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.32891353531146e-12!GO:0006164;purine nucleotide biosynthetic process;7.97947788079749e-12!GO:0000775;chromosome, pericentric region;8.20959921865129e-12!GO:0008026;ATP-dependent helicase activity;8.7181691769686e-12!GO:0006333;chromatin assembly or disassembly;9.07596667679865e-12!GO:0008134;transcription factor binding;1.13880446457148e-11!GO:0016779;nucleotidyltransferase activity;1.15032811115255e-11!GO:0030163;protein catabolic process;1.38866676550641e-11!GO:0016607;nuclear speck;1.40339271242928e-11!GO:0012501;programmed cell death;1.68395844331847e-11!GO:0006915;apoptosis;1.75137618674684e-11!GO:0009150;purine ribonucleotide metabolic process;2.43324952872339e-11!GO:0044432;endoplasmic reticulum part;3.42564813686133e-11!GO:0016568;chromatin modification;3.54211163373534e-11!GO:0009060;aerobic respiration;6.15931978402693e-11!GO:0009152;purine ribonucleotide biosynthetic process;6.26802424980013e-11!GO:0065004;protein-DNA complex assembly;6.52243975683357e-11!GO:0009056;catabolic process;7.98716132032216e-11!GO:0051188;cofactor biosynthetic process;8.38518449891695e-11!GO:0017038;protein import;8.66565889712558e-11!GO:0030532;small nuclear ribonucleoprotein complex;9.24556401914375e-11!GO:0009055;electron carrier activity;9.89538077818263e-11!GO:0006464;protein modification process;1.20681931466738e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.60262008792068e-10!GO:0006261;DNA-dependent DNA replication;1.63427642987532e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.12698473038468e-10!GO:0008219;cell death;2.2301216660594e-10!GO:0016265;death;2.2301216660594e-10!GO:0016787;hydrolase activity;2.40905314686617e-10!GO:0003697;single-stranded DNA binding;2.42017808508256e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.51173040814265e-10!GO:0045333;cellular respiration;5.0155420866403e-10!GO:0005783;endoplasmic reticulum;7.38151029781364e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.11149408447888e-09!GO:0043566;structure-specific DNA binding;2.04020259881906e-09!GO:0016740;transferase activity;3.12535978589873e-09!GO:0048193;Golgi vesicle transport;3.34662315037708e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.43124714503232e-09!GO:0015986;ATP synthesis coupled proton transport;3.73760989847723e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.73760989847723e-09!GO:0006099;tricarboxylic acid cycle;4.18360398339337e-09!GO:0046356;acetyl-CoA catabolic process;4.18360398339337e-09!GO:0008565;protein transporter activity;4.22915049682315e-09!GO:0019829;cation-transporting ATPase activity;4.30643829253751e-09!GO:0006084;acetyl-CoA metabolic process;4.78484621663561e-09!GO:0003899;DNA-directed RNA polymerase activity;4.85529581521287e-09!GO:0009117;nucleotide metabolic process;6.81021373159715e-09!GO:0009141;nucleoside triphosphate metabolic process;8.63932490251471e-09!GO:0043687;post-translational protein modification;8.83860227040543e-09!GO:0009199;ribonucleoside triphosphate metabolic process;8.90853713397167e-09!GO:0051246;regulation of protein metabolic process;1.34891889879855e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.41721693602619e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.63090283438198e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.63090283438198e-08!GO:0000075;cell cycle checkpoint;1.7950464933171e-08!GO:0005819;spindle;1.79785931645825e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.93622628336785e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.93622628336785e-08!GO:0009108;coenzyme biosynthetic process;2.13944003708787e-08!GO:0006334;nucleosome assembly;2.16705964762374e-08!GO:0046034;ATP metabolic process;2.56826895406983e-08!GO:0005789;endoplasmic reticulum membrane;3.03720786432825e-08!GO:0006754;ATP biosynthetic process;3.18079802499175e-08!GO:0006753;nucleoside phosphate metabolic process;3.18079802499175e-08!GO:0008639;small protein conjugating enzyme activity;3.34393194389544e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.34393194389544e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.59751294144794e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.59751294144794e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.01088955843878e-08!GO:0006461;protein complex assembly;4.44838101551929e-08!GO:0005657;replication fork;6.39589996443666e-08!GO:0031497;chromatin assembly;6.6150628803994e-08!GO:0009109;coenzyme catabolic process;7.2095111425958e-08!GO:0016469;proton-transporting two-sector ATPase complex;7.95431202543829e-08!GO:0000245;spliceosome assembly;8.23722433266999e-08!GO:0004842;ubiquitin-protein ligase activity;8.8649292140267e-08!GO:0051187;cofactor catabolic process;9.5532605296695e-08!GO:0003712;transcription cofactor activity;1.19520007589985e-07!GO:0008094;DNA-dependent ATPase activity;1.44342488184048e-07!GO:0051170;nuclear import;1.51842974488818e-07!GO:0006752;group transfer coenzyme metabolic process;1.58360346595378e-07!GO:0019787;small conjugating protein ligase activity;1.64824531670871e-07!GO:0015630;microtubule cytoskeleton;1.71733976926533e-07!GO:0007005;mitochondrion organization and biogenesis;1.73248350003954e-07!GO:0051329;interphase of mitotic cell cycle;1.75130363673665e-07!GO:0016192;vesicle-mediated transport;1.84094190653656e-07!GO:0051325;interphase;2.19359409287455e-07!GO:0007051;spindle organization and biogenesis;2.23386956369097e-07!GO:0045259;proton-transporting ATP synthase complex;2.66759395250598e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.36944705431034e-07!GO:0004298;threonine endopeptidase activity;3.53120054836265e-07!GO:0003724;RNA helicase activity;4.17370155370996e-07!GO:0051168;nuclear export;4.40433488585628e-07!GO:0006606;protein import into nucleus;4.6065988395103e-07!GO:0042981;regulation of apoptosis;4.82598434529194e-07!GO:0005813;centrosome;5.13900072309856e-07!GO:0005762;mitochondrial large ribosomal subunit;5.19782007459646e-07!GO:0000315;organellar large ribosomal subunit;5.19782007459646e-07!GO:0016741;transferase activity, transferring one-carbon groups;6.17873061224493e-07!GO:0044452;nucleolar part;6.38180767215948e-07!GO:0043067;regulation of programmed cell death;6.7211624059803e-07!GO:0008033;tRNA processing;6.72563733686481e-07!GO:0005793;ER-Golgi intermediate compartment;7.38204891386078e-07!GO:0005815;microtubule organizing center;1.08175949356176e-06!GO:0005794;Golgi apparatus;1.13332467348305e-06!GO:0016881;acid-amino acid ligase activity;1.18166759462434e-06!GO:0008168;methyltransferase activity;1.20909381143141e-06!GO:0006082;organic acid metabolic process;1.29661487875206e-06!GO:0019752;carboxylic acid metabolic process;1.29976868493881e-06!GO:0006302;double-strand break repair;1.57244972431333e-06!GO:0004518;nuclease activity;1.6078087434711e-06!GO:0016491;oxidoreductase activity;1.88428090635821e-06!GO:0016363;nuclear matrix;1.89186352948754e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.1418794511447e-06!GO:0016853;isomerase activity;2.30108531776265e-06!GO:0006793;phosphorus metabolic process;2.33632130695663e-06!GO:0006796;phosphate metabolic process;2.33632130695663e-06!GO:0006401;RNA catabolic process;2.5256939129867e-06!GO:0007059;chromosome segregation;3.21771200099324e-06!GO:0000314;organellar small ribosomal subunit;3.91820739835555e-06!GO:0005763;mitochondrial small ribosomal subunit;3.91820739835555e-06!GO:0032446;protein modification by small protein conjugation;3.95386879282944e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.45426079461189e-06!GO:0006091;generation of precursor metabolites and energy;4.8597612235272e-06!GO:0000776;kinetochore;6.41942406566747e-06!GO:0016567;protein ubiquitination;7.08359668887614e-06!GO:0006310;DNA recombination;7.5119228409475e-06!GO:0006950;response to stress;7.57976092395538e-06!GO:0016310;phosphorylation;7.57976092395538e-06!GO:0009165;nucleotide biosynthetic process;9.55987201283667e-06!GO:0006366;transcription from RNA polymerase II promoter;9.61080936080307e-06!GO:0043623;cellular protein complex assembly;1.01820612500374e-05!GO:0046483;heterocycle metabolic process;1.20458151071952e-05!GO:0006520;amino acid metabolic process;1.22562473590527e-05!GO:0005773;vacuole;1.24049308207532e-05!GO:0000786;nucleosome;1.26310552159819e-05!GO:0006613;cotranslational protein targeting to membrane;1.26563433252516e-05!GO:0008654;phospholipid biosynthetic process;1.37260743687166e-05!GO:0030880;RNA polymerase complex;1.45603192837859e-05!GO:0003713;transcription coactivator activity;1.49757500880039e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.60995687609049e-05!GO:0000323;lytic vacuole;1.65039658379188e-05!GO:0005764;lysosome;1.65039658379188e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.86946056724133e-05!GO:0015399;primary active transmembrane transporter activity;1.86946056724133e-05!GO:0007088;regulation of mitosis;2.1061322336136e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.12083367301658e-05!GO:0000151;ubiquitin ligase complex;2.50697205717458e-05!GO:0008186;RNA-dependent ATPase activity;2.57060827216869e-05!GO:0003684;damaged DNA binding;2.63117884896331e-05!GO:0043021;ribonucleoprotein binding;2.84185913551486e-05!GO:0045454;cell redox homeostasis;3.17715440637168e-05!GO:0006626;protein targeting to mitochondrion;3.23021814484738e-05!GO:0030120;vesicle coat;3.31489833109319e-05!GO:0030662;coated vesicle membrane;3.31489833109319e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;3.89512781419916e-05!GO:0000428;DNA-directed RNA polymerase complex;3.89512781419916e-05!GO:0006405;RNA export from nucleus;4.36595133257366e-05!GO:0048475;coated membrane;4.39046245444497e-05!GO:0030117;membrane coat;4.39046245444497e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.39393906383674e-05!GO:0005768;endosome;4.4745142882404e-05!GO:0006383;transcription from RNA polymerase III promoter;4.61723490166645e-05!GO:0003690;double-stranded DNA binding;5.32057276821224e-05!GO:0043681;protein import into mitochondrion;5.59034303905831e-05!GO:0004527;exonuclease activity;6.4332820316115e-05!GO:0032508;DNA duplex unwinding;6.50198879669722e-05!GO:0032392;DNA geometric change;6.50198879669722e-05!GO:0006916;anti-apoptosis;6.51487890273585e-05!GO:0004004;ATP-dependent RNA helicase activity;8.07833184639031e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.38168311200629e-05!GO:0051052;regulation of DNA metabolic process;9.59264982094616e-05!GO:0007093;mitotic cell cycle checkpoint;9.87965338175949e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000116605986927259!GO:0006268;DNA unwinding during replication;0.000122476200930487!GO:0003729;mRNA binding;0.000142870990561323!GO:0005667;transcription factor complex;0.000145446751866692!GO:0006414;translational elongation;0.000147899591700643!GO:0003678;DNA helicase activity;0.000162218573834624!GO:0003682;chromatin binding;0.000163438463504291!GO:0005788;endoplasmic reticulum lumen;0.000164620439543392!GO:0000082;G1/S transition of mitotic cell cycle;0.000168323951560248!GO:0019899;enzyme binding;0.000179174300996521!GO:0006818;hydrogen transport;0.000179536576256934!GO:0015992;proton transport;0.000196927843795173!GO:0000049;tRNA binding;0.000202966508518729!GO:0009112;nucleobase metabolic process;0.000203913672345292!GO:0046474;glycerophospholipid biosynthetic process;0.000218161799464232!GO:0006519;amino acid and derivative metabolic process;0.000227175311800852!GO:0043492;ATPase activity, coupled to movement of substances;0.000239928716798667!GO:0005885;Arp2/3 protein complex;0.000247981636184174!GO:0043069;negative regulation of programmed cell death;0.000255509297294683!GO:0006839;mitochondrial transport;0.000273378955723683!GO:0006270;DNA replication initiation;0.000275382363952429!GO:0005684;U2-dependent spliceosome;0.000280711047674804!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000287776329039691!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000290227926032792!GO:0065009;regulation of a molecular function;0.000304265393084767!GO:0007052;mitotic spindle organization and biogenesis;0.000313069985763413!GO:0009124;nucleoside monophosphate biosynthetic process;0.000315099847823432!GO:0009123;nucleoside monophosphate metabolic process;0.000315099847823432!GO:0043066;negative regulation of apoptosis;0.000334664557104019!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000357833061376201!GO:0019867;outer membrane;0.00036135272668587!GO:0043596;nuclear replication fork;0.00036135272668587!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00037568354942515!GO:0005758;mitochondrial intermembrane space;0.000393721511170246!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000396926279972381!GO:0030384;phosphoinositide metabolic process;0.000402228526890595!GO:0031968;organelle outer membrane;0.000402228526890595!GO:0044262;cellular carbohydrate metabolic process;0.000411638197516511!GO:0006417;regulation of translation;0.000413361807947257!GO:0046489;phosphoinositide biosynthetic process;0.000424606438515827!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000457786324205946!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000459449340968223!GO:0031072;heat shock protein binding;0.000462425758806829!GO:0005770;late endosome;0.000483898558362503!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000490492612538899!GO:0000059;protein import into nucleus, docking;0.00049898446503151!GO:0016563;transcription activator activity;0.000508213828979092!GO:0009451;RNA modification;0.000526902086982939!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000529421595220995!GO:0045786;negative regulation of progression through cell cycle;0.000536385816732339!GO:0000228;nuclear chromosome;0.000568893555943838!GO:0016251;general RNA polymerase II transcription factor activity;0.000574793332923113!GO:0006402;mRNA catabolic process;0.000607428741329556!GO:0051427;hormone receptor binding;0.000617996768871713!GO:0006352;transcription initiation;0.000624850390319458!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000632074608406529!GO:0000287;magnesium ion binding;0.000644103375160827!GO:0044440;endosomal part;0.000694936562584981!GO:0010008;endosome membrane;0.000694936562584981!GO:0005637;nuclear inner membrane;0.000710060418536598!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.000766205171750946!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00077065418300584!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00077065418300584!GO:0007006;mitochondrial membrane organization and biogenesis;0.000818777388248384!GO:0006650;glycerophospholipid metabolic process;0.000853377854655598!GO:0009161;ribonucleoside monophosphate metabolic process;0.00085824742140951!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00085824742140951!GO:0048523;negative regulation of cellular process;0.000908836832656497!GO:0005741;mitochondrial outer membrane;0.000910641431410119!GO:0050662;coenzyme binding;0.0009187544518963!GO:0004540;ribonuclease activity;0.000970598483838596!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000992610853199539!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000992610853199539!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000992610853199539!GO:0051539;4 iron, 4 sulfur cluster binding;0.000993207273598978!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00102791995563815!GO:0051540;metal cluster binding;0.00104984523472523!GO:0051536;iron-sulfur cluster binding;0.00104984523472523!GO:0006284;base-excision repair;0.00110354696375436!GO:0000922;spindle pole;0.00118186676880755!GO:0035257;nuclear hormone receptor binding;0.00120721922146279!GO:0022890;inorganic cation transmembrane transporter activity;0.0013406631764374!GO:0031326;regulation of cellular biosynthetic process;0.00136652434186019!GO:0015631;tubulin binding;0.00138304663741939!GO:0031970;organelle envelope lumen;0.00138304663741939!GO:0000725;recombinational repair;0.00148654941746095!GO:0000724;double-strand break repair via homologous recombination;0.00148654941746095!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0015429726570963!GO:0009308;amine metabolic process;0.0015555385772531!GO:0006807;nitrogen compound metabolic process;0.00156685406619792!GO:0043601;nuclear replisome;0.00156996266765891!GO:0030894;replisome;0.00156996266765891!GO:0009116;nucleoside metabolic process;0.00158117737239055!GO:0003711;transcription elongation regulator activity;0.00158509818462053!GO:0008610;lipid biosynthetic process;0.0017508471417667!GO:0000070;mitotic sister chromatid segregation;0.00178953776773702!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00197586342469568!GO:0000819;sister chromatid segregation;0.00198313301356933!GO:0031570;DNA integrity checkpoint;0.00203440493343809!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00206809064155137!GO:0048500;signal recognition particle;0.00206814929391214!GO:0016272;prefoldin complex;0.0021031821698293!GO:0008312;7S RNA binding;0.00215292995713631!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00218976916148393!GO:0000178;exosome (RNase complex);0.00228933021404081!GO:0006506;GPI anchor biosynthetic process;0.00229132094255124!GO:0006497;protein amino acid lipidation;0.00233033380323075!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.002339656811113!GO:0005048;signal sequence binding;0.00258109071940961!GO:0016859;cis-trans isomerase activity;0.00263992764600863!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00266082998903244!GO:0003725;double-stranded RNA binding;0.00271167292203748!GO:0000339;RNA cap binding;0.00280858525769163!GO:0051087;chaperone binding;0.00285848019215405!GO:0031124;mRNA 3'-end processing;0.00300806043329575!GO:0000096;sulfur amino acid metabolic process;0.00303477707316248!GO:0005525;GTP binding;0.00304043830787005!GO:0046467;membrane lipid biosynthetic process;0.00307610886813674!GO:0005798;Golgi-associated vesicle;0.00313097660783249!GO:0031252;leading edge;0.00316787971687755!GO:0008408;3'-5' exonuclease activity;0.00326457708659968!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00329638908944431!GO:0009303;rRNA transcription;0.00338637804375917!GO:0008139;nuclear localization sequence binding;0.00339476708811673!GO:0030867;rough endoplasmic reticulum membrane;0.00343438834394891!GO:0006595;polyamine metabolic process;0.00347876276965647!GO:0006406;mRNA export from nucleus;0.00348679919508681!GO:0006144;purine base metabolic process;0.0034996129743312!GO:0006505;GPI anchor metabolic process;0.0035270877610937!GO:0006611;protein export from nucleus;0.00355017123769862!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.00362219590975167!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.00362219590975167!GO:0009126;purine nucleoside monophosphate metabolic process;0.00362219590975167!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.00362219590975167!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00363754314013206!GO:0005669;transcription factor TFIID complex;0.00382806439379793!GO:0047485;protein N-terminus binding;0.0040096425666122!GO:0006275;regulation of DNA replication;0.00423530764815462!GO:0008180;signalosome;0.00427895790112369!GO:0006289;nucleotide-excision repair;0.00429381791042708!GO:0033116;ER-Golgi intermediate compartment membrane;0.00433321528145224!GO:0003887;DNA-directed DNA polymerase activity;0.00433590270692478!GO:0032200;telomere organization and biogenesis;0.00443720177700268!GO:0000723;telomere maintenance;0.00443720177700268!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00456003421821497!GO:0015002;heme-copper terminal oxidase activity;0.00456003421821497!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00456003421821497!GO:0004129;cytochrome-c oxidase activity;0.00456003421821497!GO:0008632;apoptotic program;0.00458587047638778!GO:0019843;rRNA binding;0.00469064982985753!GO:0043284;biopolymer biosynthetic process;0.00475816618144248!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00494706597336092!GO:0051053;negative regulation of DNA metabolic process;0.00500043115222496!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00500043115222496!GO:0045047;protein targeting to ER;0.00500043115222496!GO:0006612;protein targeting to membrane;0.00500467889540249!GO:0006778;porphyrin metabolic process;0.00511742726794777!GO:0033013;tetrapyrrole metabolic process;0.00511742726794777!GO:0009889;regulation of biosynthetic process;0.00514739929471832!GO:0005769;early endosome;0.00545660427314998!GO:0000726;non-recombinational repair;0.00560337024537343!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00585092973578114!GO:0044431;Golgi apparatus part;0.00593873515172149!GO:0006118;electron transport;0.00597656258856962!GO:0048037;cofactor binding;0.00624246835669194!GO:0000910;cytokinesis;0.00624246835669194!GO:0004532;exoribonuclease activity;0.00632309751956911!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00632309751956911!GO:0048519;negative regulation of biological process;0.00639879178199108!GO:0000781;chromosome, telomeric region;0.00653509235865511!GO:0030658;transport vesicle membrane;0.00657565968137874!GO:0042393;histone binding;0.00673349366743287!GO:0006400;tRNA modification;0.00673349366743287!GO:0031123;RNA 3'-end processing;0.0068722428118534!GO:0044454;nuclear chromosome part;0.00689641099921819!GO:0006779;porphyrin biosynthetic process;0.00693711685269677!GO:0033014;tetrapyrrole biosynthetic process;0.00693711685269677!GO:0004261;cathepsin G activity;0.00696770014021724!GO:0000793;condensed chromosome;0.00700279042993979!GO:0043065;positive regulation of apoptosis;0.00702208532943796!GO:0050790;regulation of catalytic activity;0.00719425939553022!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00727313488104672!GO:0042158;lipoprotein biosynthetic process;0.00737900304689006!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.007523749497389!GO:0051252;regulation of RNA metabolic process;0.00755695458126222!GO:0031988;membrane-bound vesicle;0.00760779483398723!GO:0000077;DNA damage checkpoint;0.00761281707272442!GO:0003924;GTPase activity;0.00792860168053496!GO:0005774;vacuolar membrane;0.00806295868822027!GO:0007017;microtubule-based process;0.00808733670516069!GO:0005832;chaperonin-containing T-complex;0.00819970744353751!GO:0016126;sterol biosynthetic process;0.00829982217362192!GO:0006338;chromatin remodeling;0.00833131999000127!GO:0004448;isocitrate dehydrogenase activity;0.00847802850589389!GO:0006378;mRNA polyadenylation;0.00865798878890652!GO:0008276;protein methyltransferase activity;0.00867359524070951!GO:0007021;tubulin folding;0.00876309876922517!GO:0005876;spindle microtubule;0.00876309876922517!GO:0008652;amino acid biosynthetic process;0.00888835929264208!GO:0004003;ATP-dependent DNA helicase activity;0.00896297986326825!GO:0048487;beta-tubulin binding;0.00900916721925225!GO:0003746;translation elongation factor activity;0.00912077796301432!GO:0043068;positive regulation of programmed cell death;0.00919353359058016!GO:0006695;cholesterol biosynthetic process;0.00971607831157565!GO:0005996;monosaccharide metabolic process;0.00979632942798493!GO:0031324;negative regulation of cellular metabolic process;0.00998638756653217!GO:0016408;C-acyltransferase activity;0.0101121020893351!GO:0043022;ribosome binding;0.0103535978771895!GO:0051287;NAD binding;0.010569774612424!GO:0035258;steroid hormone receptor binding;0.0106091911436301!GO:0019318;hexose metabolic process;0.0106506452309261!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0106688156535183!GO:0042802;identical protein binding;0.0108339583805639!GO:0030663;COPI coated vesicle membrane;0.0108743544529288!GO:0030126;COPI vesicle coat;0.0108743544529288!GO:0006740;NADPH regeneration;0.0109171426470686!GO:0006098;pentose-phosphate shunt;0.0109171426470686!GO:0006007;glucose catabolic process;0.0110052255558824!GO:0030660;Golgi-associated vesicle membrane;0.0114809828203252!GO:0031982;vesicle;0.0117228902303014!GO:0005663;DNA replication factor C complex;0.0120865004230084!GO:0046112;nucleobase biosynthetic process;0.0123068740756621!GO:0000792;heterochromatin;0.0130964616981059!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0132881443202408!GO:0035267;NuA4 histone acetyltransferase complex;0.0133196480967397!GO:0016584;nucleosome positioning;0.0133196480967397!GO:0005874;microtubule;0.0135977468326749!GO:0004523;ribonuclease H activity;0.0136197161287343!GO:0043189;H4/H2A histone acetyltransferase complex;0.0136619197546534!GO:0042168;heme metabolic process;0.013705869495144!GO:0000139;Golgi membrane;0.0137356132193304!GO:0015036;disulfide oxidoreductase activity;0.0138609194430401!GO:0004519;endonuclease activity;0.0141961801209929!GO:0007040;lysosome organization and biogenesis;0.0142396122582078!GO:0016023;cytoplasmic membrane-bound vesicle;0.0144431544181344!GO:0000152;nuclear ubiquitin ligase complex;0.0145120404864617!GO:0007243;protein kinase cascade;0.0146640732200989!GO:0032259;methylation;0.0148288710606613!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0148959521897214!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0149558357707647!GO:0032561;guanyl ribonucleotide binding;0.0149558357707647!GO:0019001;guanyl nucleotide binding;0.0149558357707647!GO:0030176;integral to endoplasmic reticulum membrane;0.0152625446118461!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0153300194513243!GO:0045039;protein import into mitochondrial inner membrane;0.0153300194513243!GO:0042770;DNA damage response, signal transduction;0.0153606666490717!GO:0044437;vacuolar part;0.0155542075275032!GO:0008017;microtubule binding;0.0156381697281245!GO:0007033;vacuole organization and biogenesis;0.0156849150775292!GO:0005732;small nucleolar ribonucleoprotein complex;0.0161729315065851!GO:0030521;androgen receptor signaling pathway;0.0163479659080505!GO:0004674;protein serine/threonine kinase activity;0.0163740456786695!GO:0006607;NLS-bearing substrate import into nucleus;0.0164449212882744!GO:0007034;vacuolar transport;0.016527510002827!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0167116653798243!GO:0005765;lysosomal membrane;0.0171976373901029!GO:0001726;ruffle;0.0174094843100905!GO:0006376;mRNA splice site selection;0.017491692810131!GO:0000389;nuclear mRNA 3'-splice site recognition;0.017491692810131!GO:0006733;oxidoreduction coenzyme metabolic process;0.0180147305068838!GO:0051656;establishment of organelle localization;0.0180147305068838!GO:0032940;secretion by cell;0.0180973906160407!GO:0051320;S phase;0.0182259814226845!GO:0006783;heme biosynthetic process;0.0182651065764781!GO:0000175;3'-5'-exoribonuclease activity;0.0184198749571457!GO:0016860;intramolecular oxidoreductase activity;0.0184198749571457!GO:0051789;response to protein stimulus;0.0184198749571457!GO:0006986;response to unfolded protein;0.0184198749571457!GO:0033367;protein localization in mast cell secretory granule;0.0184198749571457!GO:0033365;protein localization in organelle;0.0184198749571457!GO:0033371;T cell secretory granule organization and biogenesis;0.0184198749571457!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0184198749571457!GO:0033375;protease localization in T cell secretory granule;0.0184198749571457!GO:0042629;mast cell granule;0.0184198749571457!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0184198749571457!GO:0033364;mast cell secretory granule organization and biogenesis;0.0184198749571457!GO:0033380;granzyme B localization in T cell secretory granule;0.0184198749571457!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0184198749571457!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0184198749571457!GO:0033368;protease localization in mast cell secretory granule;0.0184198749571457!GO:0033366;protein localization in secretory granule;0.0184198749571457!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0184198749571457!GO:0033374;protein localization in T cell secretory granule;0.0184198749571457!GO:0031577;spindle checkpoint;0.0184598430109439!GO:0008156;negative regulation of DNA replication;0.0185628632412991!GO:0006213;pyrimidine nucleoside metabolic process;0.0193382914855719!GO:0005975;carbohydrate metabolic process;0.0194505539598924!GO:0046822;regulation of nucleocytoplasmic transport;0.0202648538510234!GO:0006672;ceramide metabolic process;0.0202669898376292!GO:0046365;monosaccharide catabolic process;0.0208634085801672!GO:0030508;thiol-disulfide exchange intermediate activity;0.0211461488979223!GO:0007050;cell cycle arrest;0.0219198760265804!GO:0000123;histone acetyltransferase complex;0.0219771969844354!GO:0045045;secretory pathway;0.0225170267688881!GO:0016197;endosome transport;0.0229198165535677!GO:0008250;oligosaccharyl transferase complex;0.0230765961026424!GO:0008047;enzyme activator activity;0.0234872261951274!GO:0043414;biopolymer methylation;0.0235885599746494!GO:0006891;intra-Golgi vesicle-mediated transport;0.0238651547531046!GO:0004576;oligosaccharyl transferase activity;0.0240586074374503!GO:0009119;ribonucleoside metabolic process;0.0244760555129492!GO:0044438;microbody part;0.024635213570043!GO:0044439;peroxisomal part;0.024635213570043!GO:0004659;prenyltransferase activity;0.0252091125657625!GO:0051098;regulation of binding;0.0262495165520311!GO:0006643;membrane lipid metabolic process;0.0263415644053425!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0264330673073279!GO:0009081;branched chain family amino acid metabolic process;0.0265822018432558!GO:0006220;pyrimidine nucleotide metabolic process;0.0265822018432558!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0265822018432558!GO:0010257;NADH dehydrogenase complex assembly;0.0265822018432558!GO:0033108;mitochondrial respiratory chain complex assembly;0.0265822018432558!GO:0030137;COPI-coated vesicle;0.0267579228363224!GO:0031410;cytoplasmic vesicle;0.0267579228363224!GO:0016564;transcription repressor activity;0.0269519666637503!GO:0004526;ribonuclease P activity;0.0275042835595535!GO:0009892;negative regulation of metabolic process;0.0277899570744704!GO:0046164;alcohol catabolic process;0.0277899570744704!GO:0030118;clathrin coat;0.0278157814655888!GO:0032039;integrator complex;0.0283168926969332!GO:0001522;pseudouridine synthesis;0.0284310284410245!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0286136359857813!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0292090200429286!GO:0009066;aspartate family amino acid metabolic process;0.0300949487723851!GO:0006730;one-carbon compound metabolic process;0.0310881886071786!GO:0043631;RNA polyadenylation;0.0312178568445283!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0313266320645844!GO:0019320;hexose catabolic process;0.0318074898349798!GO:0004185;serine carboxypeptidase activity;0.0318892150408087!GO:0005869;dynactin complex;0.0320429007826495!GO:0009615;response to virus;0.0322664246997278!GO:0005658;alpha DNA polymerase:primase complex;0.0323305790407799!GO:0006635;fatty acid beta-oxidation;0.032591423695244!GO:0031903;microbody membrane;0.0335641407444709!GO:0005778;peroxisomal membrane;0.0335641407444709!GO:0006516;glycoprotein catabolic process;0.0339493979808707!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0340491513398632!GO:0032984;macromolecular complex disassembly;0.0342772763128748!GO:0003756;protein disulfide isomerase activity;0.0348779878206053!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0348779878206053!GO:0030134;ER to Golgi transport vesicle;0.0350106808898863!GO:0001832;blastocyst growth;0.0350493847442508!GO:0008144;drug binding;0.0360443571732405!GO:0019206;nucleoside kinase activity;0.0362015734134519!GO:0006767;water-soluble vitamin metabolic process;0.03626327742884!GO:0008538;proteasome activator activity;0.0366646157782602!GO:0005784;translocon complex;0.0366646157782602!GO:0000097;sulfur amino acid biosynthetic process;0.0367558682792898!GO:0048471;perinuclear region of cytoplasm;0.0380475725238583!GO:0009262;deoxyribonucleotide metabolic process;0.0385899982709542!GO:0008287;protein serine/threonine phosphatase complex;0.0389252773091236!GO:0030518;steroid hormone receptor signaling pathway;0.03911080120166!GO:0031371;ubiquitin conjugating enzyme complex;0.0394988648426857!GO:0006303;double-strand break repair via nonhomologous end joining;0.0396954919790229!GO:0009067;aspartate family amino acid biosynthetic process;0.0397338122247129!GO:0033170;DNA-protein loading ATPase activity;0.0416730051922937!GO:0003689;DNA clamp loader activity;0.0416730051922937!GO:0005689;U12-dependent spliceosome;0.041745996378269!GO:0003923;GPI-anchor transamidase activity;0.0418255293891116!GO:0016255;attachment of GPI anchor to protein;0.0418255293891116!GO:0042765;GPI-anchor transamidase complex;0.0418255293891116!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0420044556462232!GO:0048522;positive regulation of cellular process;0.042469491879316!GO:0008536;Ran GTPase binding;0.0426124890310133!GO:0042026;protein refolding;0.0427353396541727!GO:0004815;aspartate-tRNA ligase activity;0.0427353396541727!GO:0006422;aspartyl-tRNA aminoacylation;0.0427353396541727!GO:0030127;COPII vesicle coat;0.0427353396541727!GO:0012507;ER to Golgi transport vesicle membrane;0.0427353396541727!GO:0022411;cellular component disassembly;0.0427504300267179!GO:0051881;regulation of mitochondrial membrane potential;0.0427586405772896!GO:0006917;induction of apoptosis;0.0433815062974633!GO:0050178;phenylpyruvate tautomerase activity;0.0434649630037165!GO:0003893;epsilon DNA polymerase activity;0.043499378966778!GO:0003709;RNA polymerase III transcription factor activity;0.0437463135634157!GO:0006379;mRNA cleavage;0.0439975331558662!GO:0051059;NF-kappaB binding;0.0440561578027369!GO:0031647;regulation of protein stability;0.0440561578027369!GO:0051920;peroxiredoxin activity;0.0441263932250312!GO:0008097;5S rRNA binding;0.045077117995127!GO:0006555;methionine metabolic process;0.0457061642255687!GO:0007004;telomere maintenance via telomerase;0.0461538859438927!GO:0046479;glycosphingolipid catabolic process;0.0464777782622187!GO:0016279;protein-lysine N-methyltransferase activity;0.0467202161980256!GO:0018024;histone-lysine N-methyltransferase activity;0.0467202161980256!GO:0016278;lysine N-methyltransferase activity;0.0467202161980256!GO:0019901;protein kinase binding;0.0472419950967863!GO:0009396;folic acid and derivative biosynthetic process;0.0477747251860253!GO:0018196;peptidyl-asparagine modification;0.0477747251860253!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0477747251860253!GO:0006596;polyamine biosynthetic process;0.047894406284977!GO:0006644;phospholipid metabolic process;0.0479145609460189!GO:0022415;viral reproductive process;0.0483427358888484!GO:0030132;clathrin coat of coated pit;0.0483525974807309!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0483525974807309!GO:0016407;acetyltransferase activity;0.0484078522567276!GO:0004536;deoxyribonuclease activity;0.0486006318933923!GO:0006301;postreplication repair;0.0488218079289526!GO:0042054;histone methyltransferase activity;0.048838965751141!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0492401027078558!GO:0030174;regulation of DNA replication initiation;0.0492849979395009!GO:0051090;regulation of transcription factor activity;0.0492955057363943!GO:0032404;mismatch repair complex binding;0.0493962542716767!GO:0051338;regulation of transferase activity;0.0497169952418711!GO:0008320;protein transmembrane transporter activity;0.0499476962124649
|sample_id=10834
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=MYB:2.12193472649;E2F1..5:1.96508115438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.72351301129;NKX2-2,8:1.58475360192;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.54325434651;SPIB:1.15692297003;ELK1,4_GABP{A,B1}:1.06325320151;YY1:1.04702702955;ELF1,2,4:1.03623542647;SPI1:0.93329196574;FOXA2:0.837737617839;NRF1:0.813004664377;NR5A1,2:0.733981495862;ETS1,2:0.728710933839;DMAP1_NCOR{1,2}_SMARC:0.727920221489;NR6A1:0.712671274516;GATA4:0.625674746471;NANOG{mouse}:0.62479530329;ZNF143:0.617941184437;PAX3,7:0.612197130094;RUNX1..3:0.60936935402;POU5F1:0.575670559776;IKZF2:0.569033722877;NFY{A,B,C}:0.56271226132;FOXP3:0.534010135185;TEF:0.519347723217;ESRRA:0.518625458309;TFDP1:0.508292351407;NKX3-2:0.493892744442;CEBPA,B_DDIT3:0.493386552529;CRX:0.482933439031;KLF4:0.470256954899;BREu{core}:0.456126067261;AIRE:0.4297550484;bHLH_family:0.427028350364;GATA6:0.407542898388;CUX2:0.39490117495;HOX{A5,B5}:0.37877684418;FOXD3:0.363824389373;FOXQ1:0.348293601132;HAND1,2:0.340246803081;GCM1,2:0.332570823988;ARID5B:0.309089207413;RXRA_VDR{dimer}:0.292122258625;PITX1..3:0.235727867039;POU2F1..3:0.226123155581;ZNF238:0.225878919531;NKX3-1:0.199323335452;HNF4A_NR2F1,2:0.190733854185;ZBTB16:0.177871439317;OCT4_SOX2{dimer}:0.173597767616;PAX8:0.162380885586;NANOG:0.155568428843;NFIL3:0.141228006825;EN1,2:0.129165832893;GFI1:0.110863384943;HOX{A6,A7,B6,B7}:0.10177459471;SREBF1,2:0.0695103995582;PRRX1,2:0.0665019800482;NKX6-1,2:0.062889124139;HLF:0.0439098281534;HBP1_HMGB_SSRP1_UBTF:0.0233124144459;VSX1,2:0.0152408850658;PAX5:-0.00560079314208;HOX{A4,D4}:-0.0649046641502;NKX2-3_NKX2-5:-0.0658031341271;REST:-0.0937088341895;HES1:-0.107447886291;IKZF1:-0.137701452483;ALX1:-0.140283592704;PAX2:-0.141082773441;POU1F1:-0.151639532662;MYOD1:-0.166112606825;AR:-0.172422511288;RFX2..5_RFXANK_RFXAP:-0.185973451892;AHR_ARNT_ARNT2:-0.18599235354;SOX{8,9,10}:-0.206319434778;PRDM1:-0.21519425957;FOX{I1,J2}:-0.219777192888;NFKB1_REL_RELA:-0.226156470494;UFEwm:-0.2274076757;CDX1,2,4:-0.227857826464;ATF5_CREB3:-0.229038112231;T:-0.236856573381;PBX1:-0.237139221072;EP300:-0.246725632103;FOXM1:-0.24785020697;POU6F1:-0.258128263212;PPARG:-0.270000760338;MYBL2:-0.273620206826;MTF1:-0.273871244055;IRF7:-0.2738971037;FOXP1:-0.290248694147;IRF1,2:-0.291791455389;TOPORS:-0.30613402942;HSF1,2:-0.309272757614;ONECUT1,2:-0.311625337211;HNF1A:-0.31294941085;GZF1:-0.335948620778;NFE2:-0.339703138322;MYFfamily:-0.348009806627;NR1H4:-0.353625366743;FOSL2:-0.359338978966;DBP:-0.369651065885;ZEB1:-0.371952889492;SOX17:-0.372555195831;TLX2:-0.375595332898;RORA:-0.377860339666;HMX1:-0.379298473878;SNAI1..3:-0.400385567058;NKX2-1,4:-0.410648012572;ZNF384:-0.428132757626;STAT5{A,B}:-0.433690632679;RBPJ:-0.456850954879;HIF1A:-0.476545455475;TGIF1:-0.481838979176;POU3F1..4:-0.500358648944;NFE2L2:-0.504260979012;XBP1:-0.511713378386;NFE2L1:-0.513280959065;SPZ1:-0.515223893538;MEF2{A,B,C,D}:-0.518675197964;FOX{F1,F2,J1}:-0.521678396194;CREB1:-0.525257864839;FOS_FOS{B,L1}_JUN{B,D}:-0.526701235654;RREB1:-0.584297523375;BACH2:-0.587435300386;PAX6:-0.59493288064;HOXA9_MEIS1:-0.60432328866;LEF1_TCF7_TCF7L1,2:-0.625948231049;ZNF423:-0.628800738992;PDX1:-0.656576792822;RXR{A,B,G}:-0.657559294394;MZF1:-0.663133488701;ESR1:-0.672811342439;ATF4:-0.702169926226;FOXN1:-0.704863255701;EVI1:-0.72432837947;PAX4:-0.736491033641;ALX4:-0.75851729288;NHLH1,2:-0.801412434895;SRF:-0.843251926784;GTF2A1,2:-0.850169114423;ZBTB6:-0.857485639481;LMO2:-0.860197365272;LHX3,4:-0.899137257785;MAFB:-0.904887603027;TAL1_TCF{3,4,12}:-0.916468916977;ZNF148:-0.919787712752;EBF1:-0.922680173021;FOXO1,3,4:-0.93337063271;BPTF:-0.93382649665;TP53:-0.970104945236;HMGA1,2:-0.976410971308;RFX1:-0.98020700609;TFAP2{A,C}:-0.982824664272;ZFP161:-0.984051931461;ADNP_IRX_SIX_ZHX:-0.994064543733;FOXL1:-1.0304703059;CDC5L:-1.05128700985;SOX5:-1.0532960674;GTF2I:-1.05818570199;ZIC1..3:-1.05999748215;MTE{core}:-1.09854689755;NFIX:-1.1244486796;NR3C1:-1.14988747854;TLX1..3_NFIC{dimer}:-1.18101083228;TFCP2:-1.19971643003;PAX1,9:-1.21520081612;SMAD1..7,9:-1.22841482146;STAT2,4,6:-1.23581093606;TFAP4:-1.2425827708;MED-1{core}:-1.30604743678;TEAD1:-1.31063590068;SP1:-1.32439622133;TBX4,5:-1.34141495552;NFATC1..3:-1.35167589785;ATF2:-1.35795676084;GLI1..3:-1.36161695242;HIC1:-1.39024483808;TBP:-1.41001430299;SOX2:-1.45514277181;STAT1,3:-1.48589770496;ATF6:-1.51752521759;GFI1B:-1.52741655813;PATZ1:-1.57552798655;TFAP2B:-1.58496211421;FOX{D1,D2}:-1.62694136197;JUN:-1.72460706571;XCPE1{core}:-1.76266522846;EGR1..3:-1.83691570777;MAZ:-1.89078906967
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10834-111D6;search_select_hide=table117:FF:10834-111D6
}}
}}

Latest revision as of 15:08, 3 June 2020

Name:acute myeloid leukemia (FAB M5) cell line:U-937 DE-4
Species:Human (Homo sapiens)
Library ID:CNhs13058
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age37
cell typemonoblast
cell lineU-937 DE-4
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004814
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13058 CAGE DRX007816 DRR008688
Accession ID Hg19

Library idBAMCTSS
CNhs13058 DRZ000113 DRZ001498
Accession ID Hg38

Library idBAMCTSS
CNhs13058 DRZ011463 DRZ012848
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.244
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.64
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0781
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.183
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0775
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.685
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.486
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0775
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.631
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.2
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.33
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid1.14
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.251
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13058

Jaspar motifP-value
MA0002.23.88778e-4
MA0003.10.907
MA0004.10.0101
MA0006.10.262
MA0007.10.95
MA0009.10.402
MA0014.10.955
MA0017.10.00439
MA0018.28.43162e-4
MA0019.10.435
MA0024.12.47799e-7
MA0025.10.837
MA0027.10.337
MA0028.11.07258e-4
MA0029.10.61
MA0030.10.0122
MA0031.10.0191
MA0035.20.305
MA0038.12.49317e-4
MA0039.20.902
MA0040.10.352
MA0041.10.266
MA0042.10.822
MA0043.10.712
MA0046.10.26
MA0047.20.626
MA0048.10.255
MA0050.10.327
MA0051.10.202
MA0052.10.00551
MA0055.10.182
MA0057.10.562
MA0058.10.00201
MA0059.14.03269e-5
MA0060.10.491
MA0061.10.308
MA0062.22.2347e-8
MA0065.20.00226
MA0066.10.228
MA0067.10.613
MA0068.19.80967e-4
MA0069.10.355
MA0070.10.815
MA0071.10.013
MA0072.10.415
MA0073.10.613
MA0074.10.84
MA0076.13.47829e-5
MA0077.10.395
MA0078.10.495
MA0079.20.331
MA0080.27.70242e-13
MA0081.10.00171
MA0083.10.00248
MA0084.10.365
MA0087.10.234
MA0088.10.00409
MA0090.11.95069e-5
MA0091.10.941
MA0092.10.298
MA0093.10.00711
MA0099.20.00378
MA0100.10.00124
MA0101.10.694
MA0102.20.158
MA0103.10.582
MA0104.24.13049e-5
MA0105.10.00191
MA0106.10.299
MA0107.10.191
MA0108.26.61195e-14
MA0111.10.45
MA0112.20.0229
MA0113.10.735
MA0114.10.00933
MA0115.10.0176
MA0116.11.97618e-5
MA0117.10.979
MA0119.10.574
MA0122.10.362
MA0124.10.371
MA0125.10.49
MA0131.10.299
MA0135.10.918
MA0136.13.49391e-22
MA0137.20.0035
MA0138.20.988
MA0139.10.238
MA0140.10.336
MA0141.10.00634
MA0142.10.123
MA0143.10.518
MA0144.10.377
MA0145.10.561
MA0146.10.18
MA0147.11.42692e-5
MA0148.10.334
MA0149.10.151
MA0150.10.851
MA0152.10.334
MA0153.10.0368
MA0154.10.0301
MA0155.10.88
MA0156.16.73952e-16
MA0157.10.361
MA0159.10.0573
MA0160.10.0404
MA0162.10.666
MA0163.12.86522e-15
MA0164.10.564
MA0258.10.0685
MA0259.10.0341



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13058

Novel motifP-value
10.00947
100.00827
1000.312
1010.262
1020.347
1030.372
1040.943
1050.27
1060.579
1070.366
1080.982
1090.0485
110.0493
1100.0643
1110.0095
1120.179
1130.556
1140.0683
1150.595
1160.279
1170.0119
1180.0883
1190.675
120.994
1200.233
1210.674
1220.994
1230.162
1240.0625
1250.0169
1260.0873
1270.0713
1280.511
1290.555
130.0222
1300.75
1310.259
1320.45
1330.899
1340.844
1350.37
1360.214
1370.126
1380.449
1390.398
140.975
1400.0751
1410.494
1420.606
1430.228
1440.672
1450.949
1460.841
1470.158
1480.0691
1490.539
150.0743
1500.841
1510.924
1520.084
1530.304
1540.844
1550.2
1560.868
1570.171
1580.853
1590.892
160.641
1600.209
1610.0377
1620.834
1630.389
1640.0804
1650.0789
1660.256
1670.25
1680.733
1690.228
170.712
180.304
190.486
20.726
200.744
210.0255
220.68
230.24
240.0227
250.153
260.0656
270.413
280.85
290.036
30.0634
300.2
310.634
320.621
330.422
340.887
350.248
360.0417
370.301
380.31
390.347
40.0957
400.167
410.336
420.209
430.498
440.0122
450.453
460.0941
470.0454
480.0255
490.284
50.575
500.904
510.885
520.154
530.738
540.895
550.634
560.81
570.0696
580.153
590.387
60.303
600.971
610.0366
620.0857
630.467
640.107
650.967
660.278
670.399
680.724
690.576
70.09
700.916
710.00831
720.718
730.586
740.282
750.00869
760.57
770.79
780.0305
790.829
80.0436
800.874
810.127
820.482
830.68
840.566
850.382
860.383
870.235
880.43
890.37
90.56
900.184
910.97
920.694
930.172
940.387
950.0756
960.554
970.304
980.304
990.368



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13058


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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