FF:10845-111E8: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	mesothelioma cell line:NCI-H28
Species:	Human (Homo sapiens)
Library ID:	CNhs13061
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	48
cell type	mesothelial cell
cell line	NCI-H28
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005137

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13061		CAGE		DRX007949		DRR008821

Accession ID Hg19

Library id		BAM		CTSS
CNhs13061		DRZ000246		DRZ001631

Accession ID Hg38

Library id		BAM		CTSS
CNhs13061		DRZ011596		DRZ012981

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.363
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.18
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0567
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.382
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.128
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00163
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	1.214
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.424
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.15
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13061

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0222
MA0003.1	MA0003.1	0.047
MA0004.1	MA0004.1	0.832
MA0006.1	MA0006.1	0.605
MA0007.1	MA0007.1	0.564
MA0009.1	MA0009.1	0.965
MA0014.1	MA0014.1	0.659
MA0017.1	MA0017.1	0.037
MA0018.2	MA0018.2	4.21886e-4
MA0019.1	MA0019.1	0.744
MA0024.1	MA0024.1	2.64967e-5
MA0025.1	MA0025.1	0.43
MA0027.1	MA0027.1	0.245
MA0028.1	MA0028.1	2.27953e-11
MA0029.1	MA0029.1	0.563
MA0030.1	MA0030.1	0.306
MA0031.1	MA0031.1	0.121
MA0035.2	MA0035.2	0.172
MA0038.1	MA0038.1	0.817
MA0039.2	MA0039.2	0.118
MA0040.1	MA0040.1	0.918
MA0041.1	MA0041.1	0.0647
MA0042.1	MA0042.1	0.0137
MA0043.1	MA0043.1	0.42
MA0046.1	MA0046.1	3.95335e-36
MA0047.2	MA0047.2	0.253
MA0048.1	MA0048.1	0.0183
MA0050.1	MA0050.1	3.00954e-6
MA0051.1	MA0051.1	0.00564
MA0052.1	MA0052.1	5.44262e-4
MA0055.1	MA0055.1	2.30107e-4
MA0057.1	MA0057.1	0.681
MA0058.1	MA0058.1	0.518
MA0059.1	MA0059.1	0.158
MA0060.1	MA0060.1	0.054
MA0061.1	MA0061.1	0.375
MA0062.2	MA0062.2	1.59011e-11
MA0065.2	MA0065.2	0.0147
MA0066.1	MA0066.1	0.893
MA0067.1	MA0067.1	0.0419
MA0068.1	MA0068.1	8.4021e-4
MA0069.1	MA0069.1	0.781
MA0070.1	MA0070.1	0.0853
MA0071.1	MA0071.1	0.0151
MA0072.1	MA0072.1	0.776
MA0073.1	MA0073.1	0.871
MA0074.1	MA0074.1	0.7
MA0076.1	MA0076.1	9.44856e-13
MA0077.1	MA0077.1	0.989
MA0078.1	MA0078.1	0.621
MA0079.2	MA0079.2	0.435
MA0080.2	MA0080.2	9.67819e-9
MA0081.1	MA0081.1	0.232
MA0083.1	MA0083.1	1.13901e-4
MA0084.1	MA0084.1	0.0549
MA0087.1	MA0087.1	0.589
MA0088.1	MA0088.1	0.0383
MA0090.1	MA0090.1	0.812
MA0091.1	MA0091.1	0.0757
MA0092.1	MA0092.1	0.172
MA0093.1	MA0093.1	0.676
MA0099.2	MA0099.2	0.0877
MA0100.1	MA0100.1	0.256
MA0101.1	MA0101.1	0.66
MA0102.2	MA0102.2	0.254
MA0103.1	MA0103.1	0.0119
MA0104.2	MA0104.2	0.0829
MA0105.1	MA0105.1	0.898
MA0106.1	MA0106.1	0.418
MA0107.1	MA0107.1	0.15
MA0108.2	MA0108.2	8.66783e-14
MA0111.1	MA0111.1	0.905
MA0112.2	MA0112.2	0.549
MA0113.1	MA0113.1	0.601
MA0114.1	MA0114.1	2.65405e-4
MA0115.1	MA0115.1	0.00721
MA0116.1	MA0116.1	0.574
MA0117.1	MA0117.1	0.397
MA0119.1	MA0119.1	0.377
MA0122.1	MA0122.1	0.457
MA0124.1	MA0124.1	0.359
MA0125.1	MA0125.1	0.893
MA0131.1	MA0131.1	0.355
MA0135.1	MA0135.1	0.773
MA0136.1	MA0136.1	5.51278e-5
MA0137.2	MA0137.2	0.0884
MA0138.2	MA0138.2	0.179
MA0139.1	MA0139.1	0.184
MA0140.1	MA0140.1	0.45
MA0141.1	MA0141.1	6.10029e-5
MA0142.1	MA0142.1	0.41
MA0143.1	MA0143.1	0.826
MA0144.1	MA0144.1	0.0682
MA0145.1	MA0145.1	0.252
MA0146.1	MA0146.1	0.934
MA0147.1	MA0147.1	0.0306
MA0148.1	MA0148.1	0.267
MA0149.1	MA0149.1	0.184
MA0150.1	MA0150.1	0.103
MA0152.1	MA0152.1	0.496
MA0153.1	MA0153.1	2.55133e-26
MA0154.1	MA0154.1	0.328
MA0155.1	MA0155.1	0.0992
MA0156.1	MA0156.1	0.217
MA0157.1	MA0157.1	0.0203
MA0159.1	MA0159.1	0.0578
MA0160.1	MA0160.1	0.195
MA0162.1	MA0162.1	0.6
MA0163.1	MA0163.1	0.0763
MA0164.1	MA0164.1	0.807
MA0258.1	MA0258.1	0.26
MA0259.1	MA0259.1	0.0601

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13061

Novel motif	Logo	P-value
1	1	0.153
10	10	0.112
100	100	0.076
101	101	0.312
102	102	0.286
103	103	0.4
104	104	0.651
105	105	0.345
106	106	0.026
107	107	0.0537
108	108	0.423
109	109	0.255
11	11	0.826
110	110	0.401
111	111	0.306
112	112	0.354
113	113	0.0997
114	114	0.522
115	115	0.729
116	116	0.505
117	117	0.264
118	118	0.0799
119	119	0.905
12	12	0.65
120	120	0.776
121	121	0.824
122	122	0.745
123	123	0.278
124	124	0.284
125	125	0.726
126	126	0.939
127	127	0.205
128	128	5.87253e-4
129	129	0.331
13	13	1.03006e-4
130	130	0.827
131	131	0.777
132	132	0.246
133	133	0.032
134	134	0.327
135	135	0.369
136	136	0.00678
137	137	0.149
138	138	0.344
139	139	0.203
14	14	0.551
140	140	0.155
141	141	0.542
142	142	0.674
143	143	0.0442
144	144	0.969
145	145	0.346
146	146	0.827
147	147	0.848
148	148	0.919
149	149	0.692
15	15	0.629
150	150	0.878
151	151	0.588
152	152	0.028
153	153	0.511
154	154	0.394
155	155	0.78
156	156	0.823
157	157	0.619
158	158	0.532
159	159	0.845
16	16	0.914
160	160	0.365
161	161	0.91
162	162	0.696
163	163	0.815
164	164	0.836
165	165	0.732
166	166	0.739
167	167	0.2
168	168	0.87
169	169	0.79
17	17	0.278
18	18	0.401
19	19	0.383
2	2	0.0778
20	20	0.164
21	21	0.964
22	22	0.619
23	23	0.0628
24	24	0.159
25	25	0.77
26	26	0.309
27	27	0.614
28	28	0.542
29	29	0.189
3	3	0.845
30	30	0.199
31	31	0.595
32	32	0.0705
33	33	0.656
34	34	0.0856
35	35	0.648
36	36	0.463
37	37	0.916
38	38	0.858
39	39	0.39
4	4	0.918
40	40	0.612
41	41	0.0128
42	42	0.788
43	43	0.576
44	44	0.107
45	45	0.564
46	46	0.56
47	47	0.473
48	48	0.734
49	49	0.525
5	5	0.202
50	50	0.902
51	51	0.327
52	52	0.0779
53	53	0.242
54	54	0.722
55	55	0.805
56	56	0.878
57	57	0.359
58	58	0.657
59	59	0.725
6	6	0.851
60	60	0.159
61	61	0.194
62	62	0.465
63	63	0.927
64	64	0.847
65	65	0.312
66	66	0.443
67	67	0.865
68	68	0.635
69	69	0.254
7	7	0.755
70	70	0.784
71	71	0.169
72	72	0.54
73	73	0.235
74	74	0.31
75	75	0.237
76	76	0.75
77	77	0.466
78	78	0.0162
79	79	0.355
8	8	0.931
80	80	0.00414
81	81	0.438
82	82	0.275
83	83	0.197
84	84	0.229
85	85	0.257
86	86	0.655
87	87	0.217
88	88	0.523
89	89	0.645
9	9	0.0378
90	90	0.37
91	91	0.0857
92	92	0.0887
93	93	0.989
94	94	0.134
95	95	0.791
96	96	0.582
97	97	0.469
98	98	0.602
99	99	0.768

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13061

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
FF:0103764 NCI cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0102424 (mesothelioma cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007843
+|DRA_sample_Accession=CAGE@SAMD00005137
-|accession_numbers=CAGE;DRX007949;DRR008821;DRZ000246;DRZ001631
+|accession_numbers=CAGE;DRX007949;DRR008821;DRZ000246;DRZ001631;DRZ011596;DRZ012981
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:36105042..36105060,-!p1@HNF1B!2.12!130.43!HNF1B;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.42!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.88!74.05!ELF3;;chr3:69915385..69915438,+!p3@MITF!1.84!67.65!MITF;;chr2:114036488..114036504,-!p1@PAX8!1.79!61.24!PAX8;;chr3:69915369..69915381,+!p4@MITF!1.68!47.40!MITF;;chr3:69812798..69812824,+!p8@MITF!1.60!38.44!MITF;;chr3:69812745..69812760,+!p10@MITF!1.45!27.16!MITF;;chr3:69812701..69812729,+!p9@MITF!1.40!24.34!MITF;;chr7:28448965..28448994,+!p2@CREB5!1.38!78.67!CREB5;;chr11:61520075..61520136,+!p1@C11orf9!1.38!47.66!C11orf9;;chr6:19837592..19837621,+!p1@ID4!1.36!129.15!ID4;;chr3:69812731..69812742,+!p19@MITF!1.32!19.73!MITF;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!28.96!TFAP2A;;chr9:126774018..126774055,+!p1@LHX2!1.23!15.89!LHX2;;chr3:141043020..141043049,+!p17@ZBTB38!1.19!14.61!ZBTB38;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.35!ONECUT2;;chr10:102505493..102505546,+!p2@PAX2!1.17!13.84!PAX2;;chr5:124082322..124082364,-!p1@ZNF608!1.12!31.01!ZNF608;;chr7:28452130..28452154,+!p10@CREB5!1.12!12.04!CREB5;;chr4:87928142..87928165,+!p5@AFF1!1.09!38.69!AFF1;;chr3:69812649..69812658,+!p20@MITF!1.09!11.27!MITF;;chr3:69812764..69812775,+!p18@MITF!1.07!10.76!MITF;;chr4:87928166..87928186,+!p12@AFF1!1.06!16.40!AFF1;;chr8:76319876..76319926,+!p1@HNF4G!1.02!9.48!HNF4G;;chr12:100867653..100867677,+!p2@NR1H4!1.02!9.48!NR1H4;;chr3:69812852..69812864,+!p17@MITF!1.00!8.97!MITF;;chr9:4300050..4300118,-!p1@GLIS3!0.99!57.91!GLIS3;;chr6:10415276..10415341,-!p2@TFAP2A!0.99!10.76!TFAP2A;;chr3:69811858..69811881,+!p5@MITF!0.99!8.71!MITF;;chr18:55102628..55102646,+!p2@ONECUT2!0.99!8.71!ONECUT2;;chr3:141043050..141043063,+!p22@ZBTB38!0.98!8.46!ZBTB38;;chr17:79881332..79881348,-!p3@MAFG!0.97!12.30!MAFG;;chr5:176738887..176738934,-!p1@MXD3!0.96!55.60!MXD3;;chr3:170076314..170076334,+!p2@SKIL!0.96!10.76!SKIL;;chr16:51185172..51185197,-!p1@SALL1!0.96!8.20!SALL1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.94!KDM5D;;chr5:124081979..124082021,-!p7@ZNF608!0.94!7.69!ZNF608;;chr5:174151553..174151610,+!p1@MSX2!0.92!12.56!MSX2;;chr17:46703687..46703740,-!p1@HOXB9!0.91!7.17!HOXB9;;chr13:41593425..41593480,-!p1@ELF1!0.88!43.82!ELF1;;chr11:706938..707008,-!p3@DEAF1!0.88!8.46!DEAF1;;chr12:100867627..100867652,+!p1@NR1H4!0.88!6.66!NR1H4;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.66!MNX1;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.20!NCOA4;;chr5:124082279..124082319,-!p3@ZNF608!0.87!7.94!ZNF608;;chr6:10412392..10412409,-!p4@TFAP2A!0.86!7.17!TFAP2A;;chr20:30193083..30193098,+!p1@ID1!0.85!521.71!ID1;;chr15:67357924..67357952,+!p2@SMAD3!0.85!43.05!SMAD3;;chr3:69812877..69812886,+!p22@MITF!0.85!6.15!MITF;;chr4:87928105..87928126,+!p13@AFF1!0.84!9.22!AFF1;;chr11:120107344..120107351,+!p1@POU2F3!0.83!7.17!POU2F3;;chr6:21593973..21593988,+!p1@SOX4!0.82!218.32!SOX4;;chr2:242556880..242556899,-!p5@THAP4!0.82!5.64!THAP4;;chr3:24536253..24536328,-!p1@THRB!0.81!10.76!THRB;;chr16:54320646..54320672,-!p2@IRX3!0.81!8.71!IRX3;;chr7:28725740..28725778,+!p1@CREB5!0.80!51.76!CREB5;;chr2:63277948..63277974,+!p1@OTX1!0.80!5.38!OTX1;;chr17:36104873..36104903,-!p3@HNF1B!0.80!5.38!HNF1B;;chr1:151804244..151804310,-!p1@RORC!0.80!5.38!RORC;;chr5:76383133..76383186,-!p2@ZBED3!0.79!11.27!ZBED3;;chr5:76383070..76383117,-!p3@ZBED3!0.79!11.02!ZBED3;;chr5:174151612..174151633,+!p2@MSX2!0.79!5.12!MSX2;;chr16:54320617..54320643,-!p3@IRX3!0.78!6.66!IRX3;;chr15:66994561..66994597,+!p2@SMAD6!0.77!12.56!SMAD6;;chr15:66994615..66994630,+!p3@SMAD6!0.77!7.17!SMAD6;;chr17:36105074..36105086,-!p2@HNF1B!0.77!4.87!HNF1B;;chr7:101917407..101917443,+!p3@CUX1!0.77!4.87!CUX1;;chr2:8822176..8822196,+!p1@ID2!0.75!716.20!ID2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.75!50.99!GLIS2;;chr5:124080203..124080258,-!p5@ZNF608!0.75!5.38!ZNF608;;chr20:22564895..22564910,-!p1@FOXA2!0.75!4.61!FOXA2;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.61!HOXD8;;chr7:128577972..128578047,+!p1@IRF5!0.73!7.17!IRF5;;chr5:172662197..172662216,-!p1@NKX2-5!0.73!4.36!NKX2-5;;chr19:58373157..58373159,+!p4@ZNF587!0.72!8.20!ZNF587;;chrX:129402866..129402880,-!p1@ZNF280C!0.71!26.65!ZNF280C;;chr1:41174988..41175047,+!p4@NFYC!0.71!12.04!NFYC;;chr11:63684602..63684664,-!p1@RCOR2!0.71!8.71!RCOR2;;chr6:21597514..21597578,+!p4@SOX4!0.71!7.43!SOX4;;chr3:12330560..12330579,+!p1@PPARG!0.71!4.87!PPARG;;chr5:124082470..124082483,-!p8@ZNF608!0.71!4.10!ZNF608;;chr6:21597765..21597779,+!p2@SOX4!0.70!36.90!SOX4;;chr3:69788576..69788648,+!p1@MITF!0.69!23.57!MITF;;chr2:122042770..122042785,-!p1@TFCP2L1!0.69!3.84!TFCP2L1;;chr17:48045917..48045977,+!p1@DLX4!0.69!3.84!DLX4;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.66!PAWR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.68!5.64!NFKBIZ;;chr4:87857474..87857489,+!p7@AFF1!0.67!6.92!AFF1;;chr12:80083544..80083558,-!p13@PAWR!0.67!4.87!PAWR;;chr16:1429627..1429662,-!p2@UNKL!0.66!11.79!UNKL;;chr7:28725715..28725727,+!p3@CREB5!0.66!4.36!CREB5;;chr13:41593493..41593506,-!p8@ELF1!0.66!3.59!ELF1;;chr3:69811882..69811898,+!p6@MITF!0.66!3.59!MITF;;chr12:80084167..80084197,-!p5@PAWR!0.65!8.97!PAWR;;chr9:4300016..4300039,-!p2@GLIS3!0.65!6.41!GLIS3;;chr19:23433144..23433204,-!p1@ZNF724P!0.64!17.68!ZNF724P;;chr16:29818199..29818216,+!p11@MAZ!0.64!5.89!MAZ;;chr1:203764633..203764674,+!p2@ZC3H11A!0.64!5.89!ZC3H11A;;chr9:130966497..130966541,-!p4@CIZ1!0.64!3.33!CIZ1;;chr2:16080659..16080685,+!p1@MYCN!0.64!3.33!MYCN;;chr12:19592405..19592492,+!p2@AEBP2!0.63!33.31!AEBP2;;chr9:99180617..99180658,-!p1@ZNF367!0.63!7.94!ZNF367;;chr2:178128199..178128245,-!p3@NFE2L2!0.62!19.99!NFE2L2;;chr12:80084137..80084165,-!p10@PAWR!0.62!4.36!PAWR;;chr16:29818160..29818188,+!p6@MAZ!0.61!16.91!MAZ;;chr15:66994663..66994680,+!p1@SMAD6!0.61!8.20!SMAD6;;chr4:87968291..87968314,+!p14@AFF1!0.61!4.36!AFF1;;chr2:5832508..5832524,+!p1@SOX11!0.61!3.07!SOX11;;chr2:73144617..73144654,+!p1@EMX1!0.61!3.07!EMX1;;chr3:24536231..24536249,-!p4@THRB!0.61!3.07!THRB;;chr3:69811826..69811835,+!p16@MITF!0.61!3.07!MITF;;chr11:31832658..31832681,-!p1@PAX6!0.61!3.07!PAX6;;chr16:54319010..54319041,-!p8@IRX3!0.61!3.07!IRX3;;chr7:27153454..27153469,-!p2@HOXA3!0.61!3.07!HOXA3;;chr12:80084737..80084763,-!p3@PAWR!0.60!13.07!PAWR;;chr5:150284532..150284549,-!p1@ZNF300!0.60!6.92!ZNF300;;chr6:21597600..21597664,+!p3@SOX4!0.60!5.38!SOX4;;chr9:4299979..4299996,-!p3@GLIS3!0.60!5.38!GLIS3;;chr2:169312600..169312606,+!p2@CERS6!0.60!5.12!CERS6;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.61!IRX5;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.89!TAL1;;chr7:28448995..28449011,+!p4@CREB5!0.59!4.36!CREB5;;chr15:80696703..80696754,+!p1@ARNT2!0.59!4.10!ARNT2;;chr19:21264991..21265026,+!p1@ZNF714!0.58!22.55!ZNF714;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.09!ZFHX4;;chr12:51566562..51566584,-!p2@TFCP2!0.58!9.22!TFCP2;;chr2:172967621..172967637,-!p1@DLX2!0.58!8.71!DLX2;;chr16:51185318..51185348,-!p2@SALL1!0.58!2.82!SALL1;;chr17:46132044..46132080,+!p4@NFE2L1!0.58!2.82!NFE2L1;;chrY:2803415..2803468,+!p1@ZFY!0.58!2.82!ZFY;;chr14:38064429..38064486,-!p1@FOXA1!0.58!2.82!FOXA1;;chr5:124082428..124082439,-!p16@ZNF608!0.58!2.82!ZNF608;;chr8:11561684..11561751,+!p1@GATA4!0.58!2.82!GATA4;;chr19:22034809..22034878,-!p2@ZNF43!0.57!11.27!ZNF43;;chr6:21597370..21597408,+!p5@SOX4!0.57!4.87!SOX4;;chr4:87968203..87968221,+!p11@AFF1!0.57!4.87!AFF1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.56!174.76!NFKBIZ;;chr8:28243813..28243839,-!p4@ZNF395!0.56!5.38!ZNF395;;chr9:77112244..77112262,+!p1@RORB!0.56!3.07!RORB;;chr3:114343826..114343869,-!p4@ZBTB20!0.55!5.89!ZBTB20;;chr5:134369905..134369972,-!p1@PITX1!0.55!4.36!PITX1;;chr5:172662230..172662241,-!p3@NKX2-5!0.55!2.56!NKX2-5;;chr17:46703528..46703549,-!p5@HOXB9!0.55!2.56!HOXB9;;chr17:79881433..79881452,-!p6@MAFG!0.55!2.56!MAFG;;chr2:191906489..191906517,-!p6@STAT4!0.55!2.56!STAT4;;chr3:138665937..138665968,-!p1@FOXL2!0.55!2.56!FOXL2;;chr10:102505954..102505973,+!p3@PAX2!0.55!2.56!PAX2;;chr12:100897130..100897149,+!p3@NR1H4!0.55!2.56!NR1H4;;chr13:100623375..100623425,-!p1@ZIC5!0.55!2.56!ZIC5;;chr17:7590797..7590815,-!p1@TP53!0.54!138.37!TP53;;chr19:9695195..9695221,-!p2@ZNF121!0.54!36.13!ZNF121;;chr9:109625401..109625458,+!p1@ZNF462!0.54!7.69!ZNF462;;chr18:56532100..56532130,+!p1@ZNF532!0.54!5.12!ZNF532;;chr17:41277372..41277418,-!p1@BRCA1!0.53!10.76!BRCA1;;chr2:148778973..148779035,+!p3@MBD5!0.53!7.43!MBD5;;chr4:87967906..87967931,+!p15@AFF1!0.53!3.59!AFF1;;chr5:124082580..124082603,-!p4@ZNF608!0.53!2.82!ZNF608;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.45!MYBL2;;chr2:242576431..242576458,-!p3@THAP4!0.52!6.66!THAP4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.89!IRX3;;chr13:37494365..37494381,-!p1@SMAD9!0.52!4.61!SMAD9;;chr16:54320101..54320125,-!p4@IRX3!0.52!3.59!IRX3;;chr12:80083807..80083859,-!p11@PAWR!0.52!3.07!PAWR;;chr6:10412576..10412599,-!p5@TFAP2A!0.52!2.31!TFAP2A;;chr15:66994885..66994904,+!p7@SMAD6!0.52!2.31!SMAD6;;chr19:22034784..22034801,-!p4@ZNF43!0.52!2.31!ZNF43;;chr2:242556900..242556916,-!p6@THAP4!0.52!2.31!THAP4;;chr3:24536332..24536358,-!p2@THRB!0.52!2.31!THRB;;chr14:74226961..74227020,-!p1@C14orf43!0.51!18.71!C14orf43;;chr19:58361185..58361235,+!p2@ZNF587!0.51!15.37!ZNF587;;chr19:11849700..11849803,-!p1@ZNF823!0.51!13.84!ZNF823;;chr4:87857433..87857472,+!p9@AFF1!0.51!4.61!AFF1;;chr2:191878812..191878823,-!p2@STAT1!0.51!3.07!STAT1;;chr9:137217986..137218049,+!p3@RXRA!0.50!7.69!RXRA;;chr19:22018938..22018963,-!p3@ZNF43!0.50!6.15!ZNF43;;chr13:72441315..72441454,-!p1@DACH1!0.50!5.12!DACH1;;chr5:72744445..72744466,-!p2@FOXD1!0.50!4.10!FOXD1;;chr9:4299959..4299974,-!p4@GLIS3!0.50!3.84!GLIS3;;chr8:67525443..67525459,-!p2@MYBL1!0.50!3.59!MYBL1;;chr18:46475696..46475713,-!p1@SMAD7!0.50!2.56!SMAD7;;chr5:138609782..138609826,+!p5@MATR3!0.49!17.68!MATR3;;chr12:80084303..80084332,-!p1@PAWR!0.49!16.14!PAWR;;chr19:37096139..37096170,-!p2@ZNF529!0.49!7.17!ZNF529;;chr12:125002827..125002855,-!p5@NCOR2!0.49!3.33!NCOR2;;chr3:32023232..32023273,+!p1@ZNF860!0.49!3.33!ZNF860;;chr14:74226833..74226845,-!p7@C14orf43!0.49!3.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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H28.CNhs13061.10845-111E8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10845-111E8
 |is_a=EFO:0002091;;FF:0000210;;FF:0102424;;FF:0103764
 |is_obsolete=
 |library_id=CNhs13061
-|library_ids=CNhs13061
+|library_id_phase_based=2:CNhs13061
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10845
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10845
 |name=mesothelioma cell line:NCI-H28
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13061,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
 |repeat_enrich_byfamily=0,0,0.0495365713353616,0,0,0,0,0.0193724825589684,0,0.0561357938753371,0.262100588052594,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0943371949604506,0,0,0,0,0,0.149702309040821,0,0,-0.033883447108139,0,0,0,0,0,0,0,0,0,0,0,0,0.0374534855450617,0,0,0,0,0,0,0,0,0.074858121557889,0,0,0,0,0,0,0,0.209425390335127,0,0,0.0017295154576263,0,0,0,0,0,0,0,0,0.0990731426707233,0,0,0,0,0,0,0,0,0.032386155013311,0.0495365713353616,0,0,0,0,0,-0.00966655792986115,0.173366673989801,0,0,-0.0584468268118252,-0.161660831360507,0,0,0,0,0.208382400340026,0.130450459748423,0,0,0,0,0,0,0,0,0,0,0.247660205308878,0,0,0,0,0,0,0.0827088103041805,0,0,0,0.0536162488432144,0.139571125785428,0,0,0.0990731426707233,0,0,0
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@@ Line 64: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=111E8
+|rna_tube_id=1.11E+10
 |rna_weight_ug=94.935
 |sample_age=48
@@ Line 89: / Line 100: @@
 |top_motifs=ALX1:2.5683885444;HNF1A:2.32232672315;ESRRA:1.68006445815;ONECUT1,2:1.66037127975;ELK1,4_GABP{A,B1}:1.57537485811;FOXQ1:1.47497941771;ZBTB16:1.38749254881;MYOD1:1.30528672375;RXRA_VDR{dimer}:1.26001703362;LHX3,4:1.25394598609;NKX6-1,2:1.22903264296;EVI1:1.1536838603;E2F1..5:1.13038684942;NR5A1,2:0.998439836535;NFE2L2:0.997287364723;NR6A1:0.958202794661;PITX1..3:0.945248168651;NKX2-1,4:0.906368232562;ADNP_IRX_SIX_ZHX:0.889826320321;NRF1:0.841333363694;PAX5:0.833725077318;CDX1,2,4:0.792704480747;MYB:0.78389355272;STAT5{A,B}:0.743023170298;ZNF143:0.729688748219;AIRE:0.718268148745;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.680921453714;NKX3-2:0.662277848875;HIF1A:0.657305486486;HNF4A_NR2F1,2:0.653807125228;RORA:0.648883261733;HOX{A6,A7,B6,B7}:0.620804718261;RXR{A,B,G}:0.578666104479;NFE2:0.55718000215;ALX4:0.542684789083;bHLH_family:0.537180906704;SOX2:0.532553184865;NFY{A,B,C}:0.517597637979;UFEwm:0.488791153508;HAND1,2:0.465614526739;PBX1:0.420330773784;YY1:0.397603892098;TEF:0.382617305454;DBP:0.354128618236;TBX4,5:0.335970208093;PAX4:0.329131712244;XCPE1{core}:0.324521864361;LEF1_TCF7_TCF7L1,2:0.287595042011;ARID5B:0.262116498941;SNAI1..3:0.250892070302;IKZF2:0.243800866926;TOPORS:0.238387281669;NANOG:0.233817973471;NR1H4:0.231111734551;FOXP3:0.219727678856;NFE2L1:0.209168303784;NKX3-1:0.208375144107;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203955679362;POU1F1:0.182366624451;CUX2:0.178421822756;ZFP161:0.166523156643;ZEB1:0.165455619665;EN1,2:0.153660368402;GFI1:0.144836810935;NKX2-2,8:0.144345524748;IKZF1:0.130485232729;TEAD1:0.112593268814;TP53:0.100593819031;HOXA9_MEIS1:0.0880034285576;BREu{core}:0.0846039801342;NFIX:0.0802029434746;FOXM1:0.0735333360002;HOX{A4,D4}:0.071470533572;OCT4_SOX2{dimer}:0.0662170379136;FOSL2:0.0585591785826;FOX{F1,F2,J1}:0.0580817267211;ZIC1..3:0.0512844937144;FOXP1:0.0400905403546;SOX17:0.033725375485;PDX1:0.031184211012;ELF1,2,4:0.0279869389276;HOX{A5,B5}:0.0180099466879;FOXN1:-0.0191131359374;LMO2:-0.0290831904315;POU6F1:-0.0387724902963;XBP1:-0.0417612024862;FOXD3:-0.0453675765518;PRRX1,2:-0.0481560318471;RFX1:-0.0996104464747;RBPJ:-0.109619076108;TFDP1:-0.110530364515;MTE{core}:-0.132515407661;CDC5L:-0.133990939783;NFKB1_REL_RELA:-0.151308586552;STAT1,3:-0.157552251594;EP300:-0.160121642593;FOXA2:-0.162415113723;PAX8:-0.173302372507;CREB1:-0.176388950045;POU5F1:-0.176666785583;TFAP2{A,C}:-0.178929067918;MZF1:-0.184612796857;AHR_ARNT_ARNT2:-0.186154860561;POU3F1..4:-0.186341153475;BACH2:-0.189121224545;GFI1B:-0.209431615665;KLF4:-0.209843533857;ATF2:-0.210001156014;PAX6:-0.242403637323;ZNF423:-0.242995591352;TFCP2:-0.250264049736;AR:-0.250369368386;PAX1,9:-0.253526587362;RFX2..5_RFXANK_RFXAP:-0.258195984953;EGR1..3:-0.278496993077;ESR1:-0.287041883498;FOS_FOS{B,L1}_JUN{B,D}:-0.297145815591;RREB1:-0.300807844968;PPARG:-0.316628913627;ZNF384:-0.323976834025;MAZ:-0.324610920471;GTF2I:-0.337381524797;PAX2:-0.363843682727;CEBPA,B_DDIT3:-0.366156554932;PATZ1:-0.375082746188;TLX1..3_NFIC{dimer}:-0.380059822661;CRX:-0.385478289142;BPTF:-0.410963046112;TFAP2B:-0.462118306514;NKX2-3_NKX2-5:-0.469221617788;MEF2{A,B,C,D}:-0.479056857648;T:-0.481303139004;SP1:-0.482929027078;GATA6:-0.485752655727;FOXL1:-0.487589478325;STAT2,4,6:-0.495311940592;GATA4:-0.516749221637;SPIB:-0.526815480325;HIC1:-0.532891409877;SPI1:-0.549529169515;IRF7:-0.554088150455;SOX{8,9,10}:-0.561408002798;ATF5_CREB3:-0.593693916809;POU2F1..3:-0.602270436108;RUNX1..3:-0.604256382225;EBF1:-0.606263600848;ZNF148:-0.620349118584;MYBL2:-0.621511895029;NR3C1:-0.621965283856;ATF4:-0.641479145316;PRDM1:-0.663116262787;TAL1_TCF{3,4,12}:-0.665633921555;FOX{I1,J2}:-0.698444727833;SPZ1:-0.702447421241;HLF:-0.716678255445;DMAP1_NCOR{1,2}_SMARC:-0.766063080953;NFIL3:-0.773727312125;ETS1,2:-0.780149522063;GZF1:-0.817892133885;SREBF1,2:-0.833821740156;MED-1{core}:-0.839392931089;REST:-0.861029710127;FOX{D1,D2}:-0.870145712054;SOX5:-0.87070012268;TGIF1:-0.915541945245;GLI1..3:-0.926112372127;HES1:-0.927441711894;PAX3,7:-0.960173603718;NFATC1..3:-0.961665436875;IRF1,2:-0.96801019083;GTF2A1,2:-0.99826398999;ZBTB6:-1.00457121923;MYFfamily:-1.02325526903;MTF1:-1.0403458207;HSF1,2:-1.04142215325;VSX1,2:-1.04212600219;JUN:-1.05284394591;HMGA1,2:-1.06563147036;FOXO1,3,4:-1.08204613885;NANOG{mouse}:-1.0860502152;GCM1,2:-1.23614337574;TBP:-1.243282624;NHLH1,2:-1.29429294329;SRF:-1.32496774583;MAFB:-1.35050533598;HMX1:-1.37025462819;ZNF238:-1.41879801171;TLX2:-1.42504390787;HBP1_HMGB_SSRP1_UBTF:-1.53330505642;SMAD1..7,9:-1.53523469897;ATF6:-1.65623338812;TFAP4:-1.67213728144
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10845-111E8;search_select_hide=table117:FF:10845-111E8
 }}

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FF:10845-111E8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0