FF:10852-111F6: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	mesothelioma cell line:Mero-48a
Species:	Human (Homo sapiens)
Library ID:	CNhs13068
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	unknown
cell type	mesothelial cell
cell line	Mero-48a
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005350

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13068		CAGE		DRX007941		DRR008813

Accession ID Hg19

Library id		BAM		CTSS
CNhs13068		DRZ000238		DRZ001623

Accession ID Hg38

Library id		BAM		CTSS
CNhs13068		DRZ011588		DRZ012973

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.301
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.16
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.334
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.149
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0754
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.165
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0359
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0904
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.173
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0904
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.418
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.334
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0904
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13068

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00829
MA0003.1	MA0003.1	0.935
MA0004.1	MA0004.1	0.662
MA0006.1	MA0006.1	0.201
MA0007.1	MA0007.1	0.0875
MA0009.1	MA0009.1	0.587
MA0014.1	MA0014.1	0.914
MA0017.1	MA0017.1	0.967
MA0018.2	MA0018.2	4.65276e-4
MA0019.1	MA0019.1	0.858
MA0024.1	MA0024.1	0.395
MA0025.1	MA0025.1	0.00455
MA0027.1	MA0027.1	0.172
MA0028.1	MA0028.1	1.79114e-6
MA0029.1	MA0029.1	0.706
MA0030.1	MA0030.1	0.0138
MA0031.1	MA0031.1	0.0116
MA0035.2	MA0035.2	0.527
MA0038.1	MA0038.1	0.603
MA0039.2	MA0039.2	0.0366
MA0040.1	MA0040.1	0.444
MA0041.1	MA0041.1	0.529
MA0042.1	MA0042.1	0.711
MA0043.1	MA0043.1	3.98492e-7
MA0046.1	MA0046.1	0.122
MA0047.2	MA0047.2	0.00298
MA0048.1	MA0048.1	0.449
MA0050.1	MA0050.1	0.0404
MA0051.1	MA0051.1	0.627
MA0052.1	MA0052.1	7.77123e-5
MA0055.1	MA0055.1	0.176
MA0057.1	MA0057.1	0.0374
MA0058.1	MA0058.1	0.459
MA0059.1	MA0059.1	0.127
MA0060.1	MA0060.1	0.845
MA0061.1	MA0061.1	0.0151
MA0062.2	MA0062.2	1.3248e-5
MA0065.2	MA0065.2	0.77
MA0066.1	MA0066.1	0.658
MA0067.1	MA0067.1	0.00102
MA0068.1	MA0068.1	2.20101e-4
MA0069.1	MA0069.1	0.292
MA0070.1	MA0070.1	0.698
MA0071.1	MA0071.1	0.282
MA0072.1	MA0072.1	0.106
MA0073.1	MA0073.1	0.257
MA0074.1	MA0074.1	0.956
MA0076.1	MA0076.1	1.0573e-5
MA0077.1	MA0077.1	0.418
MA0078.1	MA0078.1	0.494
MA0079.2	MA0079.2	0.318
MA0080.2	MA0080.2	8.74823e-12
MA0081.1	MA0081.1	0.0698
MA0083.1	MA0083.1	0.189
MA0084.1	MA0084.1	0.499
MA0087.1	MA0087.1	0.549
MA0088.1	MA0088.1	0.388
MA0090.1	MA0090.1	2.16634e-5
MA0091.1	MA0091.1	0.161
MA0092.1	MA0092.1	0.89
MA0093.1	MA0093.1	0.715
MA0099.2	MA0099.2	0.00203
MA0100.1	MA0100.1	0.707
MA0101.1	MA0101.1	0.0324
MA0102.2	MA0102.2	3.77894e-8
MA0103.1	MA0103.1	0.264
MA0104.2	MA0104.2	0.589
MA0105.1	MA0105.1	0.0392
MA0106.1	MA0106.1	0.0266
MA0107.1	MA0107.1	0.00501
MA0108.2	MA0108.2	0.0152
MA0111.1	MA0111.1	0.77
MA0112.2	MA0112.2	0.537
MA0113.1	MA0113.1	0.603
MA0114.1	MA0114.1	0.744
MA0115.1	MA0115.1	0.0946
MA0116.1	MA0116.1	0.103
MA0117.1	MA0117.1	0.698
MA0119.1	MA0119.1	0.757
MA0122.1	MA0122.1	0.988
MA0124.1	MA0124.1	0.0386
MA0125.1	MA0125.1	0.372
MA0131.1	MA0131.1	0.215
MA0135.1	MA0135.1	0.0381
MA0136.1	MA0136.1	4.78903e-9
MA0137.2	MA0137.2	0.022
MA0138.2	MA0138.2	0.0968
MA0139.1	MA0139.1	0.616
MA0140.1	MA0140.1	0.627
MA0141.1	MA0141.1	0.257
MA0142.1	MA0142.1	0.442
MA0143.1	MA0143.1	0.283
MA0144.1	MA0144.1	0.0556
MA0145.1	MA0145.1	0.77
MA0146.1	MA0146.1	0.718
MA0147.1	MA0147.1	0.615
MA0148.1	MA0148.1	0.00703
MA0149.1	MA0149.1	0.436
MA0150.1	MA0150.1	0.959
MA0152.1	MA0152.1	0.985
MA0153.1	MA0153.1	0.0924
MA0154.1	MA0154.1	0.0383
MA0155.1	MA0155.1	0.177
MA0156.1	MA0156.1	0.171
MA0157.1	MA0157.1	0.195
MA0159.1	MA0159.1	0.366
MA0160.1	MA0160.1	0.118
MA0162.1	MA0162.1	0.139
MA0163.1	MA0163.1	0.818
MA0164.1	MA0164.1	0.509
MA0258.1	MA0258.1	0.211
MA0259.1	MA0259.1	0.329

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13068

Novel motif	Logo	P-value
1	1	0.924
10	10	0.474
100	100	0.836
101	101	0.194
102	102	0.648
103	103	0.447
104	104	0.306
105	105	0.0216
106	106	0.0685
107	107	0.746
108	108	0.847
109	109	0.744
11	11	0.823
110	110	0.966
111	111	0.567
112	112	0.519
113	113	0.0152
114	114	0.331
115	115	0.326
116	116	0.548
117	117	0.956
118	118	0.0646
119	119	0.62
12	12	0.694
120	120	0.0481
121	121	0.17
122	122	0.648
123	123	0.00645
124	124	0.0401
125	125	0.217
126	126	0.55
127	127	0.123
128	128	0.00783
129	129	0.372
13	13	0.577
130	130	0.565
131	131	0.149
132	132	0.762
133	133	0.908
134	134	0.243
135	135	0.0972
136	136	0.252
137	137	0.0484
138	138	0.419
139	139	0.184
14	14	0.439
140	140	0.313
141	141	0.0331
142	142	0.511
143	143	0.215
144	144	0.854
145	145	0.212
146	146	0.778
147	147	0.32
148	148	0.6
149	149	0.222
15	15	0.562
150	150	0.171
151	151	0.9
152	152	0.0811
153	153	0.768
154	154	0.304
155	155	0.0224
156	156	0.442
157	157	0.643
158	158	0.013
159	159	0.834
16	16	0.716
160	160	0.787
161	161	0.052
162	162	0.433
163	163	0.21
164	164	0.0268
165	165	0.398
166	166	0.603
167	167	0.783
168	168	0.913
169	169	0.362
17	17	0.355
18	18	0.458
19	19	0.807
2	2	0.767
20	20	0.307
21	21	0.0851
22	22	0.432
23	23	0.712
24	24	0.295
25	25	0.717
26	26	0.232
27	27	0.701
28	28	0.613
29	29	0.0215
3	3	0.595
30	30	0.684
31	31	0.568
32	32	0.0833
33	33	0.975
34	34	0.239
35	35	0.118
36	36	0.139
37	37	0.454
38	38	0.702
39	39	0.953
4	4	0.429
40	40	0.62
41	41	0.0749
42	42	0.858
43	43	0.0602
44	44	0.245
45	45	0.178
46	46	0.986
47	47	0.595
48	48	0.737
49	49	0.0565
5	5	0.205
50	50	0.781
51	51	0.673
52	52	0.347
53	53	0.236
54	54	0.599
55	55	0.153
56	56	0.874
57	57	0.378
58	58	0.338
59	59	0.794
6	6	0.642
60	60	0.151
61	61	0.43
62	62	0.741
63	63	0.408
64	64	0.546
65	65	0.278
66	66	0.251
67	67	0.933
68	68	0.539
69	69	0.282
7	7	0.302
70	70	0.832
71	71	0.778
72	72	0.597
73	73	0.0422
74	74	0.641
75	75	0.636
76	76	0.849
77	77	0.851
78	78	0.755
79	79	0.611
8	8	0.864
80	80	0.1
81	81	0.679
82	82	0.277
83	83	0.409
84	84	0.192
85	85	0.02
86	86	0.0352
87	87	0.189
88	88	0.601
89	89	0.836
9	9	0.146
90	90	0.295
91	91	0.748
92	92	0.452
93	93	0.415
94	94	0.773
95	95	0.674
96	96	0.977
97	97	0.996
98	98	0.0458
99	99	0.031

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13068

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007835
+|DRA_sample_Accession=CAGE@SAMD00005350
-|accession_numbers=CAGE;DRX007941;DRR008813;DRZ000238;DRZ001623
+|accession_numbers=CAGE;DRX007941;DRR008813;DRZ000238;DRZ001623;DRZ011588;DRZ012973
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.70!59.96!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.68!76.40!TFAP2A;;chr10:48355030..48355090,+!p1@ZNF488!1.40!31.02!ZNF488;;chr11:46299199..46299233,+!p1@CREB3L1!1.35!108.12!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!1.33!20.37!HOXA3;;chr8:37963466..37963506,+!p3@ASH2L!1.27!21.76!ASH2L;;chr17:46682321..46682362,-!p1@HOXB6!1.27!17.83!HOXB6;;chr15:83953397..83953425,-!p1@BNC1!1.22!18.06!BNC1;;chr18:19749386..19749404,+!p2@GATA6!1.19!20.84!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.19!14.59!HOXA5;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.46!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.12!12.27!HOXC5;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.81!TBX20;;chr18:19749541..19749557,+!p1@GATA6!1.08!34.96!GATA6;;chr3:138665937..138665968,-!p1@FOXL2!1.08!11.11!FOXL2;;chr7:27170359..27170381,-!p1@HOXA4!1.07!10.88!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!1.07!10.65!HOXA5;;chr12:54332608..54332636,+!p1@HOXC13!1.03!9.72!HOXC13;;chr6:126240380..126240430,+!p2@NCOA7!1.02!25.00!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!1.02!11.58!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!1.01!10.88!GATA3;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.26!TFAP2A;;chr3:138665969..138665993,-!p2@FOXL2!1.01!9.26!FOXL2;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.88!FOXF1;;chr5:142780189..142780223,-!p6@NR3C1!0.99!8.80!NR3C1;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.57!HOXC10;;chr5:142780237..142780261,-!p7@NR3C1!0.97!8.33!NR3C1;;chr5:172662197..172662216,-!p1@NKX2-5!0.97!8.33!NKX2-5;;chr7:19157248..19157268,-!p1@TWIST1!0.94!22.23!TWIST1;;chr6:10412576..10412599,-!p5@TFAP2A!0.94!7.64!TFAP2A;;chr7:27142290..27142310,-!p1@HOXA2!0.94!7.64!HOXA2;;chr15:80696703..80696754,+!p1@ARNT2!0.92!9.96!ARNT2;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.33!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!0.91!15.51!SOX15;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.80!TBX18;;chr9:35732647..35732678,+!p2@CREB3!0.89!39.36!CREB3;;chr8:37963407..37963454,+!p2@ASH2L!0.89!21.30!ASH2L;;chr17:46806067..46806097,-!p1@HOXB13!0.87!6.48!HOXB13;;chr17:46691732..46691766,-!p4@HOXB8!0.86!6.25!HOXB8;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.25!IRX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.85!31.95!NFE2L3;;chr12:80084737..80084763,-!p3@PAWR!0.85!23.85!PAWR;;chr12:80084167..80084197,-!p5@PAWR!0.85!14.82!PAWR;;chr10:8096631..8096660,+!p1@GATA3!0.85!7.41!GATA3;;chr12:54332687..54332701,+!p3@HOXC13!0.85!6.02!HOXC13;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.02!KDM5D;;chr9:2158443..2158481,+!p2@SMARCA2!0.83!17.13!SMARCA2;;chr7:27169801..27169844,-!p2@HOXA4!0.83!5.79!HOXA4;;chr11:31832658..31832681,-!p1@PAX6!0.83!5.79!PAX6;;chr12:124873357..124873401,-!p1@NCOR2!0.82!69.69!NCOR2;;chr3:178789522..178789564,-!p2@ZMAT3!0.82!44.22!ZMAT3;;chr15:67357924..67357952,+!p2@SMAD3!0.82!39.59!SMAD3;;chr18:53068911..53068935,-!p4@TCF4!0.82!6.48!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.56!CREB3L1;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr6:28321909..28321965,-!p3@ZNF323!0.80!5.33!ZNF323;;chr7:96654026..96654061,-!p2@DLX5!0.80!5.33!DLX5;;chr3:25470156..25470227,+!p2@RARB!0.80!5.33!RARB;;chr11:31832610..31832639,-!p5@PAX6!0.80!5.33!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.80!5.33!FOXG1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.39!PPP1R13L;;chr16:86612320..86612394,+!p1@FOXL1!0.78!5.09!FOXL1;;chr11:46299186..46299195,+!p3@CREB3L1!0.77!5.56!CREB3L1;;chr6:21597765..21597779,+!p2@SOX4!0.76!42.37!SOX4;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.56!PAWR;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.18!HOXB7;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.10!MECOM;;chr7:27170274..27170308,-!p3@HOXA4!0.75!4.63!HOXA4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.63!HOXC5;;chr2:176969228..176969260,+!p1@HOXD11!0.73!4.40!HOXD11;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.40!KCNIP3;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.40!ZNF323;;chr7:27153428..27153440,-!p3@HOXA3!0.73!4.40!HOXA3;;chr5:321810..321877,+!p1@AHRR!0.71!14.35!AHRR;;chr17:46675558..46675577,-!p2@HOXB6!0.71!4.17!HOXB6;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.38!GLIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!11.11!TWIST1;;chr15:67418047..67418093,+!p4@SMAD3!0.69!5.09!SMAD3;;chr10:64134120..64134183,+!p1@ZNF365!0.69!4.86!ZNF365;;chr17:46675420..46675465,-!p3@HOXB6!0.69!4.63!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.69!3.94!LHX1;;chr17:40477163..40477183,-!p7@STAT3!0.69!3.94!STAT3;;chr17:46806098..46806118,-!p3@HOXB13!0.69!3.94!HOXB13;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.94!HOXC8;;chr8:67525443..67525459,-!p2@MYBL1!0.68!6.02!MYBL1;;chr1:151032782..151032801,+!p4@MLLT11!0.67!8.10!MLLT11;;chr3:25469724..25469773,+!p1@RARB!0.67!5.56!RARB;;chr17:46622440..46622477,-!p5@HOXB2!0.67!4.17!HOXB2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.70!ARNT2;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.70!HOXD8;;chr5:3595977..3595999,+!p1@IRX1!0.67!3.70!IRX1;;chr5:50679228..50679288,+!p1@ISL1!0.67!3.70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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10852-111F6
 |is_a=EFO:0002091;;FF:0000210;;FF:0102424
 |is_obsolete=
 |library_id=CNhs13068
-|library_ids=CNhs13068
+|library_id_phase_based=2:CNhs13068
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10852
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10852
 |name=mesothelioma cell line:Mero-48a
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13068,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 89: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10852-111F6;search_select_hide=table117:FF:10852-111F6
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Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0