FF:10855-111F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005214 | |||
|accession_numbers=CAGE;DRX007944;DRR008816;DRZ000241;DRZ001626;DRZ011591;DRZ012976 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.88!74.11!FOXS1;;chr11:61520075..61520136,+!p1@C11orf9!1.83!138.03!C11orf9;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.79!60.22!SEBOX;;chr2:16080659..16080685,+!p1@MYCN!1.61!39.84!MYCN;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.56!35.51!SEBOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.53!39.84!TFAP2A;;chr17:7493405..7493419,-!p1@SOX15!1.53!33.04!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.41!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.49!29.64!ZBED2;;chr20:55204351..55204377,+!p1@TFAP2C!1.33!25.63!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.26!25.94!PITX1;;chr22:19748231..19748317,+!p1@TBX1!1.25!16.68!TBX1;;chr2:46524897..46524911,+!p2@EPAS1!1.18!38.91!EPAS1;;chr20:62680984..62680999,-!p1@SOX18!1.17!18.22!SOX18;;chr9:132427883..132427951,+!p2@PRRX2!1.16!13.59!PRRX2;;chr2:172949484..172949522,+!p1@DLX1!1.15!12.97!DLX1;;chr21:38071430..38071456,+!p1@SIM2!1.15!12.97!SIM2;;chr4:4861385..4861398,+!p1@MSX1!1.14!37.98!MSX1;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.66!IRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.11!38.60!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.08!14.51!PRRX2;;chr9:16728047..16728061,-!p8@BNC2!1.08!11.12!BNC2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.07!10.81!SEBOX;;chr1:164528911..164528940,+!p7@PBX1!1.06!15.75!PBX1;;chr20:55205825..55205847,+!p2@TFAP2C!1.04!9.88!TFAP2C;;chr6:19837592..19837621,+!p1@ID4!1.03!60.22!ID4;;chr15:37392094..37392116,-!p6@MEIS2!1.02!11.73!MEIS2;;chr2:121493425..121493474,+!p1@GLI2!1.01!20.69!GLI2;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.26!HOXD8;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.75!GATA2;;chr6:1389789..1389821,+!p1@FOXF2!1.00!12.35!FOXF2;;chr16:1429627..1429662,-!p2@UNKL!0.99!26.25!UNKL;;chr2:239756739..239756755,+!p2@TWIST2!0.98!14.82!TWIST2;;chr15:37391588..37391604,-!p11@MEIS2!0.98!11.12!MEIS2;;chr15:67430351..67430366,+!p10@SMAD3!0.98!8.65!SMAD3;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.34!HOXB6;;chr7:96654133..96654150,-!p1@DLX5!0.97!8.34!DLX5;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.19!FOXF1;;chr5:153857778..153857794,-!p1@HAND1!0.96!8.03!HAND1;;chr9:16728161..16728185,-!p4@BNC2!0.96!8.03!BNC2;;chr17:46687959..46688007,-!p2@HOXB7!0.95!11.12!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.94!10.19!BCL3;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.96!TFAP2A;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.78!GATA6;;chr22:19746969..19746987,+!p2@TBX1!0.92!7.41!TBX1;;chr3:170076314..170076334,+!p2@SKIL!0.91!9.57!SKIL;;chr10:48355030..48355090,+!p1@ZNF488!0.91!9.26!ZNF488;;chr15:83953397..83953425,-!p1@BNC1!0.91!8.34!BNC1;;chr2:191906489..191906517,-!p6@STAT4!0.91!7.10!STAT4;;chr20:55205791..55205817,+!p3@TFAP2C!0.91!7.10!TFAP2C;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.10!KDM5D;;chr20:30193083..30193098,+!p1@ID1!0.90!583.94!ID1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.81!MYBL2;;chr7:149470540..149470596,-!p2@ZNF467!0.89!8.96!ZNF467;;chr3:138665937..138665968,-!p1@FOXL2!0.89!6.79!FOXL2;;chr1:164528942..164528964,+!p11@PBX1!0.89!6.79!PBX1;;chr1:164529004..164529015,+!p15@PBX1!0.89!6.79!PBX1;;chr2:172967621..172967637,-!p1@DLX2!0.88!18.53!DLX2;;chr12:48298765..48298783,-!p2@VDR!0.88!14.20!VDR;;chr7:149470641..149470694,-!p1@ZNF467!0.87!30.26!ZNF467;;chr15:67458861..67458879,+!p17@SMAD3!0.87!6.48!SMAD3;;chrX:24169518..24169522,+!p8@ZFX!0.87!6.48!ZFX;;chr2:45236540..45236577,-!p1@SIX2!0.87!6.48!SIX2;;chr8:37963466..37963506,+!p3@ASH2L!0.86!8.03!ASH2L;;chr15:67458836..67458859,+!p22@SMAD3!0.86!6.18!SMAD3;;chr1:164528410..164528428,+!p1@PBX1!0.85!48.17!PBX1;;chr5:174151553..174151610,+!p1@MSX2!0.85!10.50!MSX2;;chr20:50721803..50721857,-!p2@ZFP64!0.85!9.88!ZFP64;;chr12:124873357..124873401,-!p1@NCOR2!0.84!72.57!NCOR2;;chr12:57853634..57853662,+!p2@GLI1!0.84!5.87!GLI1;;chr7:101917447..101917479,+!p4@CUX1!0.84!5.87!CUX1;;chr16:85932760..85932775,+!p1@IRF8!0.84!5.87!IRF8;;chr16:29818199..29818216,+!p11@MAZ!0.83!9.88!MAZ;;chr6:85473156..85473210,-!p2@TBX18!0.83!7.10!TBX18;;chr15:37390374..37390422,-!p9@MEIS2!0.82!7.10!MEIS2;;chr1:164528975..164528998,+!p13@PBX1!0.82!5.56!PBX1;;chr15:66994561..66994597,+!p2@SMAD6!0.81!13.90!SMAD6;;chr2:46524878..46524891,+!p3@EPAS1!0.81!9.88!EPAS1;;chr15:37392534..37392562,-!p10@MEIS2!0.80!5.87!MEIS2;;chr3:111314230..111314241,-!p2@ZBED2!0.80!5.25!ZBED2;;chr1:23885981..23886002,-!p1@ID3!0.79!987.24!ID3;;chr12:80084737..80084763,-!p3@PAWR!0.79!21.00!PAWR;;chr12:54785074..54785122,-!p2@ZNF385A!0.79!8.34!ZNF385A;;chr12:3068544..3068597,+!p1@TEAD4!0.78!33.04!TEAD4;;chr8:73921136..73921151,+!p2@TERF1!0.77!7.72!TERF1;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr2:16081912..16081931,+!p2@MYCN!0.77!4.94!MYCN;;chr3:138665969..138665993,-!p2@FOXL2!0.77!4.94!FOXL2;;chr8:106330656..106330684,+!p1@ZFPM2!0.76!13.28!ZFPM2;;chr12:80084167..80084197,-!p5@PAWR!0.76!12.04!PAWR;;chr14:21566731..21566836,-!p1@ZNF219!0.75!55.28!ZNF219;;chr9:137217986..137218049,+!p3@RXRA!0.75!14.51!RXRA;;chr15:67418119..67418162,+!p5@SMAD3!0.75!5.25!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.75!4.63!SMAD3;;chr9:126774018..126774055,+!p1@LHX2!0.75!4.63!LHX2;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.63!DLX5;;chr8:11561684..11561751,+!p1@GATA4!0.75!4.63!GATA4;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.91!MLLT11;;chr12:54772960..54773015,-!p3@ZNF385A!0.73!23.78!ZNF385A;;chr2:121493492..121493537,+!p2@GLI2!0.73!7.72!GLI2;;chr12:54393880..54393962,+!p1@HOXC9!0.73!4.32!HOXC9;;chr1:164600184..164600191,+!p38@PBX1!0.73!4.32!PBX1;;chr9:16728327..16728338,-!p5@BNC2!0.73!4.32!BNC2;;chr19:16435625..16435682,+!p1@KLF2!0.71!152.55!KLF2;;chr15:66994663..66994680,+!p1@SMAD6!0.71!10.81!SMAD6;;chr12:80084137..80084165,-!p10@PAWR!0.71!5.56!PAWR;;chr2:71127699..71127744,+!p1@VAX2!0.70!8.96!VAX2;;chr1:164528687..164528711,+!p6@PBX1!0.69!4.63!PBX1;;chr15:37390850..37390909,-!p3@MEIS2!0.68!8.03!MEIS2;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.94!SMAD3;;chr1:204042233..204042249,+!p1@SOX13!0.67!26.56!SOX13;;chr1:164528445..164528459,+!p2@PBX1!0.67!12.97!PBX1;;chr7:42276787..42276815,-!p1@GLI3!0.67!10.81!GLI3;;chrX:129244655..129244697,-!p4@ELF4!0.67!7.10!ELF4;;chr5:2751785..2751808,-!p2@IRX2!0.67!3.71!IRX2;;chr8:55370487..55370503,+!p1@SOX17!0.67!3.71!SOX17;;chr3:193853927..193853944,+!p1@HES1!0.65!131.55!HES1;;chr12:48298785..48298828,-!p1@VDR!0.65!21.00!VDR;;chr20:31350184..31350200,+!p1@DNMT3B!0.65!8.03!DNMT3B;;chr18:19749386..19749404,+!p2@GATA6!0.65!5.25!GATA6;;chr12:54785054..54785072,-!p4@ZNF385A!0.65!4.01!ZNF385A;;chr15:67357924..67357952,+!p2@SMAD3!0.64!25.94!SMAD3;;chr12:124873852..124873881,-!p3@NCOR2!0.64!23.78!NCOR2;;chr12:54447599..54447630,+!p3@HOXC4!0.64!4.32!HOXC4;;chr12:54332608..54332636,+!p1@HOXC13!0.64!3.40!HOXC13;;chr2:16082155..16082169,+!p3@MYCN!0.64!3.40!MYCN;;chr2:42721205..42721307,+!p4@MTA3!0.64!3.40!MTA3;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.40!SOX11;;chr9:129376201..129376225,+!p1@LMX1B!0.64!3.40!LMX1B;;chr1:6479968..6479986,-!p1@HES2!0.64!3.40!HES2;;chr21:38071403..38071428,+!p2@SIM2!0.64!3.40!SIM2;;chr5:174151612..174151633,+!p2@MSX2!0.64!3.40!MSX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.63!38.60!GLIS2;;chr1:164528616..164528660,+!p5@PBX1!0.63!7.41!PBX1;;chr12:80084279..80084293,-!p8@PAWR!0.63!5.87!PAWR;;chr12:48744642..48744733,-!p1@ZNF641!0.62!25.01!ZNF641;;chr12:7079780..7079791,-!p2@PHB2!0.61!19.15!PHB2;;chr12:54394309..54394336,+!p2@HOXC9!0.61!3.09!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.61!3.09!HOXC8;;chr1:2985760..2985774,+!p1@PRDM16!0.61!3.09!PRDM16;;chr2:172950227..172950249,+!p2@DLX1!0.61!3.09!DLX1;;chr3:128207349..128207386,-!p3@GATA2!0.61!3.09!GATA2;;chr5:3595977..3595999,+!p1@IRX1!0.61!3.09!IRX1;;chr7:35293685..35293718,-!p1@TBX20!0.61!3.09!TBX20;;chr14:95236440..95236465,-!p1@GSC!0.61!3.09!GSC;;chr10:77161504..77161530,-!p1@ZNF503!0.60!47.86!ZNF503;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.60!33.97!ZNF595;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.63!HOXB7;;chr8:106330696..106330719,+!p2@ZFPM2!0.60!4.01!ZFPM2;;chr2:85360499..85360598,+!p1@TCF7L1!0.59!19.45!TCF7L1;;chr15:37392724..37392757,-!p1@MEIS2!0.59!15.75!MEIS2;;chr7:128577972..128578047,+!p1@IRF5!0.59!4.94!IRF5;;chr10:8096631..8096660,+!p1@GATA3!0.59!3.71!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.54!MXD3;;chr5:122424918..122424944,+!p1@PRDM6!0.58!2.78!PRDM6;;chr5:3595934..3595957,+!p2@IRX1!0.58!2.78!IRX1;;chr7:101460882..101460923,+!p5@CUX1!0.58!2.78!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.58!2.78!CUX1;;chr10:119303078..119303169,+!p2@EMX2!0.58!2.78!EMX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.58!2.78!HOXC5;;chr18:45663490..45663528,-!p2@ZBTB7C!0.58!2.78!ZBTB7C;;chr1:164528866..164528877,+!p12@PBX1!0.58!2.78!PBX1;;chr20:61051039..61051057,-!p1@GATA5!0.58!2.78!GATA5;;chr2:100721881..100721904,-!p6@AFF3!0.58!2.78!AFF3;;chr2:16080635..16080650,+!p4@MYCN!0.58!2.78!MYCN;;chr12:80084303..80084332,-!p1@PAWR!0.57!19.76!PAWR;;chr20:42295713..42295738,+!p2@MYBL2!0.57!19.45!MYBL2;;chr16:1429674..1429703,-!p3@UNKL!0.57!4.94!UNKL;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.81!TEAD4;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.48!ZNF503;;chr11:12696071..12696086,+!p3@TEAD1!0.56!3.71!TEAD1;;chr12:2986206..2986258,-!p2@FOXM1!0.55!19.15!FOXM1;;chr20:42543506..42543549,+!p2@TOX2!0.55!7.10!TOX2;;chr8:37963407..37963454,+!p2@ASH2L!0.54!8.96!ASH2L;;chr6:1389989..1390019,+!p2@FOXF2!0.54!2.47!FOXF2;;chr7:101917407..101917443,+!p3@CUX1!0.54!2.47!CUX1;;chr1:2985726..2985752,+!p2@PRDM16!0.54!2.47!PRDM16;;chr20:30433431..30433442,-!p2@FOXS1!0.54!2.47!FOXS1;;chr12:54447637..54447659,+!p4@HOXC4!0.54!2.47!HOXC4;;chr14:38064429..38064486,-!p1@FOXA1!0.54!2.47!FOXA1;;chr2:172967242..172967265,-!p2@DLX2!0.54!2.47!DLX2;;chr4:299227..299272,-!p1@ZNF732!0.54!2.47!ZNF732;;chr15:67430381..67430396,+!p21@SMAD3!0.54!2.47!SMAD3;;chr17:48045917..48045977,+!p1@DLX4!0.54!2.47!DLX4;;chr9:16727978..16728010,-!p6@BNC2!0.54!2.47!BNC2;;chr15:67358163..67358192,+!p1@SMAD3!0.53!72.26!SMAD3;;chr19:11071546..11071624,+!p2@SMARCA4!0.53!16.37!SMARCA4;;chr17:38498594..38498661,+!p2@RARA!0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| |expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.88!74.11!FOXS1;;chr11:61520075..61520136,+!p1@C11orf9!1.83!138.03!C11orf9;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.79!60.22!SEBOX;;chr2:16080659..16080685,+!p1@MYCN!1.61!39.84!MYCN;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.56!35.51!SEBOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.53!39.84!TFAP2A;;chr17:7493405..7493419,-!p1@SOX15!1.53!33.04!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.41!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.49!29.64!ZBED2;;chr20:55204351..55204377,+!p1@TFAP2C!1.33!25.63!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.26!25.94!PITX1;;chr22:19748231..19748317,+!p1@TBX1!1.25!16.68!TBX1;;chr2:46524897..46524911,+!p2@EPAS1!1.18!38.91!EPAS1;;chr20:62680984..62680999,-!p1@SOX18!1.17!18.22!SOX18;;chr9:132427883..132427951,+!p2@PRRX2!1.16!13.59!PRRX2;;chr2:172949484..172949522,+!p1@DLX1!1.15!12.97!DLX1;;chr21:38071430..38071456,+!p1@SIM2!1.15!12.97!SIM2;;chr4:4861385..4861398,+!p1@MSX1!1.14!37.98!MSX1;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.66!IRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.11!38.60!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.08!14.51!PRRX2;;chr9:16728047..16728061,-!p8@BNC2!1.08!11.12!BNC2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.07!10.81!SEBOX;;chr1:164528911..164528940,+!p7@PBX1!1.06!15.75!PBX1;;chr20:55205825..55205847,+!p2@TFAP2C!1.04!9.88!TFAP2C;;chr6:19837592..19837621,+!p1@ID4!1.03!60.22!ID4;;chr15:37392094..37392116,-!p6@MEIS2!1.02!11.73!MEIS2;;chr2:121493425..121493474,+!p1@GLI2!1.01!20.69!GLI2;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.26!HOXD8;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.75!GATA2;;chr6:1389789..1389821,+!p1@FOXF2!1.00!12.35!FOXF2;;chr16:1429627..1429662,-!p2@UNKL!0.99!26.25!UNKL;;chr2:239756739..239756755,+!p2@TWIST2!0.98!14.82!TWIST2;;chr15:37391588..37391604,-!p11@MEIS2!0.98!11.12!MEIS2;;chr15:67430351..67430366,+!p10@SMAD3!0.98!8.65!SMAD3;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.34!HOXB6;;chr7:96654133..96654150,-!p1@DLX5!0.97!8.34!DLX5;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.19!FOXF1;;chr5:153857778..153857794,-!p1@HAND1!0.96!8.03!HAND1;;chr9:16728161..16728185,-!p4@BNC2!0.96!8.03!BNC2;;chr17:46687959..46688007,-!p2@HOXB7!0.95!11.12!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.94!10.19!BCL3;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.96!TFAP2A;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.78!GATA6;;chr22:19746969..19746987,+!p2@TBX1!0.92!7.41!TBX1;;chr3:170076314..170076334,+!p2@SKIL!0.91!9.57!SKIL;;chr10:48355030..48355090,+!p1@ZNF488!0.91!9.26!ZNF488;;chr15:83953397..83953425,-!p1@BNC1!0.91!8.34!BNC1;;chr2:191906489..191906517,-!p6@STAT4!0.91!7.10!STAT4;;chr20:55205791..55205817,+!p3@TFAP2C!0.91!7.10!TFAP2C;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.10!KDM5D;;chr20:30193083..30193098,+!p1@ID1!0.90!583.94!ID1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.81!MYBL2;;chr7:149470540..149470596,-!p2@ZNF467!0.89!8.96!ZNF467;;chr3:138665937..138665968,-!p1@FOXL2!0.89!6.79!FOXL2;;chr1:164528942..164528964,+!p11@PBX1!0.89!6.79!PBX1;;chr1:164529004..164529015,+!p15@PBX1!0.89!6.79!PBX1;;chr2:172967621..172967637,-!p1@DLX2!0.88!18.53!DLX2;;chr12:48298765..48298783,-!p2@VDR!0.88!14.20!VDR;;chr7:149470641..149470694,-!p1@ZNF467!0.87!30.26!ZNF467;;chr15:67458861..67458879,+!p17@SMAD3!0.87!6.48!SMAD3;;chrX:24169518..24169522,+!p8@ZFX!0.87!6.48!ZFX;;chr2:45236540..45236577,-!p1@SIX2!0.87!6.48!SIX2;;chr8:37963466..37963506,+!p3@ASH2L!0.86!8.03!ASH2L;;chr15:67458836..67458859,+!p22@SMAD3!0.86!6.18!SMAD3;;chr1:164528410..164528428,+!p1@PBX1!0.85!48.17!PBX1;;chr5:174151553..174151610,+!p1@MSX2!0.85!10.50!MSX2;;chr20:50721803..50721857,-!p2@ZFP64!0.85!9.88!ZFP64;;chr12:124873357..124873401,-!p1@NCOR2!0.84!72.57!NCOR2;;chr12:57853634..57853662,+!p2@GLI1!0.84!5.87!GLI1;;chr7:101917447..101917479,+!p4@CUX1!0.84!5.87!CUX1;;chr16:85932760..85932775,+!p1@IRF8!0.84!5.87!IRF8;;chr16:29818199..29818216,+!p11@MAZ!0.83!9.88!MAZ;;chr6:85473156..85473210,-!p2@TBX18!0.83!7.10!TBX18;;chr15:37390374..37390422,-!p9@MEIS2!0.82!7.10!MEIS2;;chr1:164528975..164528998,+!p13@PBX1!0.82!5.56!PBX1;;chr15:66994561..66994597,+!p2@SMAD6!0.81!13.90!SMAD6;;chr2:46524878..46524891,+!p3@EPAS1!0.81!9.88!EPAS1;;chr15:37392534..37392562,-!p10@MEIS2!0.80!5.87!MEIS2;;chr3:111314230..111314241,-!p2@ZBED2!0.80!5.25!ZBED2;;chr1:23885981..23886002,-!p1@ID3!0.79!987.24!ID3;;chr12:80084737..80084763,-!p3@PAWR!0.79!21.00!PAWR;;chr12:54785074..54785122,-!p2@ZNF385A!0.79!8.34!ZNF385A;;chr12:3068544..3068597,+!p1@TEAD4!0.78!33.04!TEAD4;;chr8:73921136..73921151,+!p2@TERF1!0.77!7.72!TERF1;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr2:16081912..16081931,+!p2@MYCN!0.77!4.94!MYCN;;chr3:138665969..138665993,-!p2@FOXL2!0.77!4.94!FOXL2;;chr8:106330656..106330684,+!p1@ZFPM2!0.76!13.28!ZFPM2;;chr12:80084167..80084197,-!p5@PAWR!0.76!12.04!PAWR;;chr14:21566731..21566836,-!p1@ZNF219!0.75!55.28!ZNF219;;chr9:137217986..137218049,+!p3@RXRA!0.75!14.51!RXRA;;chr15:67418119..67418162,+!p5@SMAD3!0.75!5.25!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.75!4.63!SMAD3;;chr9:126774018..126774055,+!p1@LHX2!0.75!4.63!LHX2;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.63!DLX5;;chr8:11561684..11561751,+!p1@GATA4!0.75!4.63!GATA4;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.91!MLLT11;;chr12:54772960..54773015,-!p3@ZNF385A!0.73!23.78!ZNF385A;;chr2:121493492..121493537,+!p2@GLI2!0.73!7.72!GLI2;;chr12:54393880..54393962,+!p1@HOXC9!0.73!4.32!HOXC9;;chr1:164600184..164600191,+!p38@PBX1!0.73!4.32!PBX1;;chr9:16728327..16728338,-!p5@BNC2!0.73!4.32!BNC2;;chr19:16435625..16435682,+!p1@KLF2!0.71!152.55!KLF2;;chr15:66994663..66994680,+!p1@SMAD6!0.71!10.81!SMAD6;;chr12:80084137..80084165,-!p10@PAWR!0.71!5.56!PAWR;;chr2:71127699..71127744,+!p1@VAX2!0.70!8.96!VAX2;;chr1:164528687..164528711,+!p6@PBX1!0.69!4.63!PBX1;;chr15:37390850..37390909,-!p3@MEIS2!0.68!8.03!MEIS2;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.94!SMAD3;;chr1:204042233..204042249,+!p1@SOX13!0.67!26.56!SOX13;;chr1:164528445..164528459,+!p2@PBX1!0.67!12.97!PBX1;;chr7:42276787..42276815,-!p1@GLI3!0.67!10.81!GLI3;;chrX:129244655..129244697,-!p4@ELF4!0.67!7.10!ELF4;;chr5:2751785..2751808,-!p2@IRX2!0.67!3.71!IRX2;;chr8:55370487..55370503,+!p1@SOX17!0.67!3.71!SOX17;;chr3:193853927..193853944,+!p1@HES1!0.65!131.55!HES1;;chr12:48298785..48298828,-!p1@VDR!0.65!21.00!VDR;;chr20:31350184..31350200,+!p1@DNMT3B!0.65!8.03!DNMT3B;;chr18:19749386..19749404,+!p2@GATA6!0.65!5.25!GATA6;;chr12:54785054..54785072,-!p4@ZNF385A!0.65!4.01!ZNF385A;;chr15:67357924..67357952,+!p2@SMAD3!0.64!25.94!SMAD3;;chr12:124873852..124873881,-!p3@NCOR2!0.64!23.78!NCOR2;;chr12:54447599..54447630,+!p3@HOXC4!0.64!4.32!HOXC4;;chr12:54332608..54332636,+!p1@HOXC13!0.64!3.40!HOXC13;;chr2:16082155..16082169,+!p3@MYCN!0.64!3.40!MYCN;;chr2:42721205..42721307,+!p4@MTA3!0.64!3.40!MTA3;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.40!SOX11;;chr9:129376201..129376225,+!p1@LMX1B!0.64!3.40!LMX1B;;chr1:6479968..6479986,-!p1@HES2!0.64!3.40!HES2;;chr21:38071403..38071428,+!p2@SIM2!0.64!3.40!SIM2;;chr5:174151612..174151633,+!p2@MSX2!0.64!3.40!MSX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.63!38.60!GLIS2;;chr1:164528616..164528660,+!p5@PBX1!0.63!7.41!PBX1;;chr12:80084279..80084293,-!p8@PAWR!0.63!5.87!PAWR;;chr12:48744642..48744733,-!p1@ZNF641!0.62!25.01!ZNF641;;chr12:7079780..7079791,-!p2@PHB2!0.61!19.15!PHB2;;chr12:54394309..54394336,+!p2@HOXC9!0.61!3.09!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.61!3.09!HOXC8;;chr1:2985760..2985774,+!p1@PRDM16!0.61!3.09!PRDM16;;chr2:172950227..172950249,+!p2@DLX1!0.61!3.09!DLX1;;chr3:128207349..128207386,-!p3@GATA2!0.61!3.09!GATA2;;chr5:3595977..3595999,+!p1@IRX1!0.61!3.09!IRX1;;chr7:35293685..35293718,-!p1@TBX20!0.61!3.09!TBX20;;chr14:95236440..95236465,-!p1@GSC!0.61!3.09!GSC;;chr10:77161504..77161530,-!p1@ZNF503!0.60!47.86!ZNF503;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.60!33.97!ZNF595;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.63!HOXB7;;chr8:106330696..106330719,+!p2@ZFPM2!0.60!4.01!ZFPM2;;chr2:85360499..85360598,+!p1@TCF7L1!0.59!19.45!TCF7L1;;chr15:37392724..37392757,-!p1@MEIS2!0.59!15.75!MEIS2;;chr7:128577972..128578047,+!p1@IRF5!0.59!4.94!IRF5;;chr10:8096631..8096660,+!p1@GATA3!0.59!3.71!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.54!MXD3;;chr5:122424918..122424944,+!p1@PRDM6!0.58!2.78!PRDM6;;chr5:3595934..3595957,+!p2@IRX1!0.58!2.78!IRX1;;chr7:101460882..101460923,+!p5@CUX1!0.58!2.78!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.58!2.78!CUX1;;chr10:119303078..119303169,+!p2@EMX2!0.58!2.78!EMX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.58!2.78!HOXC5;;chr18:45663490..45663528,-!p2@ZBTB7C!0.58!2.78!ZBTB7C;;chr1:164528866..164528877,+!p12@PBX1!0.58!2.78!PBX1;;chr20:61051039..61051057,-!p1@GATA5!0.58!2.78!GATA5;;chr2:100721881..100721904,-!p6@AFF3!0.58!2.78!AFF3;;chr2:16080635..16080650,+!p4@MYCN!0.58!2.78!MYCN;;chr12:80084303..80084332,-!p1@PAWR!0.57!19.76!PAWR;;chr20:42295713..42295738,+!p2@MYBL2!0.57!19.45!MYBL2;;chr16:1429674..1429703,-!p3@UNKL!0.57!4.94!UNKL;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.81!TEAD4;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.48!ZNF503;;chr11:12696071..12696086,+!p3@TEAD1!0.56!3.71!TEAD1;;chr12:2986206..2986258,-!p2@FOXM1!0.55!19.15!FOXM1;;chr20:42543506..42543549,+!p2@TOX2!0.55!7.10!TOX2;;chr8:37963407..37963454,+!p2@ASH2L!0.54!8.96!ASH2L;;chr6:1389989..1390019,+!p2@FOXF2!0.54!2.47!FOXF2;;chr7:101917407..101917443,+!p3@CUX1!0.54!2.47!CUX1;;chr1:2985726..2985752,+!p2@PRDM16!0.54!2.47!PRDM16;;chr20:30433431..30433442,-!p2@FOXS1!0.54!2.47!FOXS1;;chr12:54447637..54447659,+!p4@HOXC4!0.54!2.47!HOXC4;;chr14:38064429..38064486,-!p1@FOXA1!0.54!2.47!FOXA1;;chr2:172967242..172967265,-!p2@DLX2!0.54!2.47!DLX2;;chr4:299227..299272,-!p1@ZNF732!0.54!2.47!ZNF732;;chr15:67430381..67430396,+!p21@SMAD3!0.54!2.47!SMAD3;;chr17:48045917..48045977,+!p1@DLX4!0.54!2.47!DLX4;;chr9:16727978..16728010,-!p6@BNC2!0.54!2.47!BNC2;;chr15:67358163..67358192,+!p1@SMAD3!0.53!72.26!SMAD3;;chr19:11071546..11071624,+!p2@SMARCA4!0.53!16.37!SMARCA4;;chr17:38498594..38498661,+!p2@RARA!0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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10855-111F9 | |id=FF:10855-111F9 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102424 | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13072 | |||
|library_id_phase_based=2:CNhs13072 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10855 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10855 | |||
|name=mesothelioma cell line:Mero-84 | |name=mesothelioma cell line:Mero-84 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13072,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13072,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 78: | ||
|rna_weight_ug=61.4 | |rna_weight_ug=61.4 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100107 | |sample_cell_catalog=9100107 | ||
|sample_cell_line=Mero-84 | |sample_cell_line=Mero-84 | ||
Line 84: | Line 100: | ||
|top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966 | |top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10855-111F9;search_select_hide=table117:FF:10855-111F9 | |||
}} | }} |
Latest revision as of 15:10, 3 June 2020
Name: | mesothelioma cell line:Mero-84 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13072 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13072
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13072
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.333 |
10 | 10 | 0.16 |
100 | 100 | 0.225 |
101 | 101 | 0.172 |
102 | 102 | 0.274 |
103 | 103 | 0.286 |
104 | 104 | 0.712 |
105 | 105 | 0.915 |
106 | 106 | 0.179 |
107 | 107 | 0.0547 |
108 | 108 | 0.773 |
109 | 109 | 0.0539 |
11 | 11 | 0.262 |
110 | 110 | 0.0336 |
111 | 111 | 0.961 |
112 | 112 | 0.496 |
113 | 113 | 0.397 |
114 | 114 | 0.764 |
115 | 115 | 0.192 |
116 | 116 | 0.0557 |
117 | 117 | 0.147 |
118 | 118 | 0.724 |
119 | 119 | 0.176 |
12 | 12 | 0.828 |
120 | 120 | 0.11 |
121 | 121 | 0.858 |
122 | 122 | 0.607 |
123 | 123 | 0.731 |
124 | 124 | 0.97 |
125 | 125 | 0.0318 |
126 | 126 | 0.635 |
127 | 127 | 0.274 |
128 | 128 | 0.333 |
129 | 129 | 0.298 |
13 | 13 | 0.138 |
130 | 130 | 0.226 |
131 | 131 | 0.951 |
132 | 132 | 0.31 |
133 | 133 | 0.155 |
134 | 134 | 0.768 |
135 | 135 | 0.674 |
136 | 136 | 0.469 |
137 | 137 | 0.059 |
138 | 138 | 0.471 |
139 | 139 | 0.323 |
14 | 14 | 0.914 |
140 | 140 | 0.66 |
141 | 141 | 0.164 |
142 | 142 | 0.694 |
143 | 143 | 0.482 |
144 | 144 | 0.438 |
145 | 145 | 0.512 |
146 | 146 | 0.155 |
147 | 147 | 0.0606 |
148 | 148 | 0.406 |
149 | 149 | 0.0588 |
15 | 15 | 0.344 |
150 | 150 | 0.255 |
151 | 151 | 0.338 |
152 | 152 | 0.0253 |
153 | 153 | 0.988 |
154 | 154 | 0.764 |
155 | 155 | 0.833 |
156 | 156 | 0.197 |
157 | 157 | 0.455 |
158 | 158 | 0.0228 |
159 | 159 | 0.366 |
16 | 16 | 0.0813 |
160 | 160 | 0.0172 |
161 | 161 | 0.0266 |
162 | 162 | 0.0181 |
163 | 163 | 0.919 |
164 | 164 | 0.484 |
165 | 165 | 0.976 |
166 | 166 | 0.213 |
167 | 167 | 0.196 |
168 | 168 | 0.466 |
169 | 169 | 0.0429 |
17 | 17 | 0.44 |
18 | 18 | 0.407 |
19 | 19 | 0.434 |
2 | 2 | 0.197 |
20 | 20 | 0.251 |
21 | 21 | 0.349 |
22 | 22 | 0.257 |
23 | 23 | 0.289 |
24 | 24 | 0.49 |
25 | 25 | 0.975 |
26 | 26 | 0.748 |
27 | 27 | 0.233 |
28 | 28 | 0.895 |
29 | 29 | 0.633 |
3 | 3 | 0.593 |
30 | 30 | 0.235 |
31 | 31 | 0.678 |
32 | 32 | 0.193 |
33 | 33 | 0.557 |
34 | 34 | 0.485 |
35 | 35 | 0.788 |
36 | 36 | 0.81 |
37 | 37 | 0.371 |
38 | 38 | 0.564 |
39 | 39 | 0.322 |
4 | 4 | 0.922 |
40 | 40 | 0.0154 |
41 | 41 | 0.0341 |
42 | 42 | 0.28 |
43 | 43 | 0.833 |
44 | 44 | 0.238 |
45 | 45 | 0.235 |
46 | 46 | 0.301 |
47 | 47 | 0.308 |
48 | 48 | 0.15 |
49 | 49 | 0.732 |
5 | 5 | 0.886 |
50 | 50 | 0.985 |
51 | 51 | 0.351 |
52 | 52 | 0.464 |
53 | 53 | 0.77 |
54 | 54 | 0.253 |
55 | 55 | 0.141 |
56 | 56 | 0.103 |
57 | 57 | 0.114 |
58 | 58 | 0.747 |
59 | 59 | 0.0884 |
6 | 6 | 0.745 |
60 | 60 | 0.558 |
61 | 61 | 0.896 |
62 | 62 | 0.684 |
63 | 63 | 0.221 |
64 | 64 | 0.127 |
65 | 65 | 0.513 |
66 | 66 | 0.273 |
67 | 67 | 0.187 |
68 | 68 | 0.125 |
69 | 69 | 0.0117 |
7 | 7 | 0.347 |
70 | 70 | 0.405 |
71 | 71 | 0.297 |
72 | 72 | 0.679 |
73 | 73 | 0.121 |
74 | 74 | 0.967 |
75 | 75 | 0.988 |
76 | 76 | 0.26 |
77 | 77 | 0.00253 |
78 | 78 | 0.0477 |
79 | 79 | 0.627 |
8 | 8 | 0.0529 |
80 | 80 | 0.645 |
81 | 81 | 0.0347 |
82 | 82 | 0.0977 |
83 | 83 | 0.372 |
84 | 84 | 0.64 |
85 | 85 | 0.389 |
86 | 86 | 0.947 |
87 | 87 | 0.0351 |
88 | 88 | 0.725 |
89 | 89 | 0.0285 |
9 | 9 | 0.676 |
90 | 90 | 0.109 |
91 | 91 | 0.625 |
92 | 92 | 0.361 |
93 | 93 | 0.65 |
94 | 94 | 0.239 |
95 | 95 | 0.254 |
96 | 96 | 0.625 |
97 | 97 | 0.857 |
98 | 98 | 0.635 |
99 | 99 | 0.00829 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13072
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)