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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004863
|accession_numbers=CAGE;DRX007951;DRR008823;DRZ000248;DRZ001633;DRZ011598;DRZ012983
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_disease_facet=DOID:4,DOID:7
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424
|comment=
|comment=
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|created_by=
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|creation_date=
|data_phase=2
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|def=
|def=
|
|expression_enrichment_score
|fonse_cell_line=FF:0102424
|fonse_cell_line=FF:0102424
|fonse_cell_line_closure=FF:0102424
|fonse_cell_line_closure=FF:0102424
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg38.nobarcode.ctss.bed.gz
|id=FF:10858-111G3
|id=FF:10858-111G3
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102424
|is_a=EFO:0002091;;FF:0000210;;FF:0102424
|is_obsolete=
|library_id=CNhs13075
|library_id_phase_based=2:CNhs13075
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10858
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10858
|name=mesothelioma cell line:ONE58
|name=mesothelioma cell line:ONE58
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
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|profile_hcage=CNhs13075,LSID1000,release012,COMPLETED
|profile_hcage=CNhs13075,LSID1000,release012,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=111
|rna_box=111
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|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=151.4268
|rna_weight_ug=151.4268
|sample_age=unknown
|sample_age=unknown
|sample_category=cell lines
|sample_cell_catalog=10092313
|sample_cell_catalog=10092313
|sample_cell_line=ONE58
|sample_cell_line=ONE58
Line 69: Line 91:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.51806458497069e-257!GO:0043231;intracellular membrane-bound organelle;4.9632766009839e-212!GO:0043227;membrane-bound organelle;5.39087200540897e-212!GO:0043226;organelle;5.90845815572124e-208!GO:0043229;intracellular organelle;2.50201514672498e-207!GO:0005737;cytoplasm;1.90694580366244e-188!GO:0044422;organelle part;1.43064958783794e-149!GO:0044446;intracellular organelle part;5.62888149092616e-148!GO:0044444;cytoplasmic part;6.89525341893651e-139!GO:0032991;macromolecular complex;4.48613597623313e-104!GO:0044237;cellular metabolic process;6.82732355179076e-99!GO:0044238;primary metabolic process;1.47094183652163e-98!GO:0030529;ribonucleoprotein complex;2.27396023178167e-91!GO:0043170;macromolecule metabolic process;2.68928029916414e-89!GO:0005634;nucleus;4.66691265706843e-88!GO:0003723;RNA binding;5.65662145853871e-81!GO:0043233;organelle lumen;2.27426240086348e-79!GO:0031974;membrane-enclosed lumen;2.27426240086348e-79!GO:0044428;nuclear part;1.07618505149494e-78!GO:0005739;mitochondrion;1.37108318538113e-74!GO:0005515;protein binding;3.57897199629222e-70!GO:0006412;translation;3.01549715982399e-56!GO:0005840;ribosome;1.51122549790379e-54!GO:0006396;RNA processing;1.29693635175095e-53!GO:0031090;organelle membrane;3.32512248052192e-52!GO:0019538;protein metabolic process;2.73242463629054e-51!GO:0043234;protein complex;3.2180757911954e-51!GO:0016043;cellular component organization and biogenesis;3.16399438046183e-50!GO:0043283;biopolymer metabolic process;2.52699613761578e-49!GO:0044429;mitochondrial part;5.26434674649441e-48!GO:0031981;nuclear lumen;1.85068289312235e-47!GO:0003735;structural constituent of ribosome;5.85528327464914e-47!GO:0009058;biosynthetic process;6.10007579323824e-47!GO:0010467;gene expression;8.39420866612039e-47!GO:0033036;macromolecule localization;1.38281224478464e-46!GO:0015031;protein transport;1.54634509420177e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.85263037718741e-45!GO:0044260;cellular macromolecule metabolic process;2.22422355167631e-45!GO:0044249;cellular biosynthetic process;2.57602893257617e-45!GO:0044267;cellular protein metabolic process;3.82380758056346e-45!GO:0005829;cytosol;3.91866192722382e-43!GO:0009059;macromolecule biosynthetic process;4.74623373452455e-43!GO:0031967;organelle envelope;6.79751468276333e-43!GO:0031975;envelope;1.1198252010435e-42!GO:0008104;protein localization;1.98375719073512e-42!GO:0045184;establishment of protein localization;2.97731261471955e-42!GO:0033279;ribosomal subunit;1.06723202857611e-39!GO:0016071;mRNA metabolic process;3.92797921009733e-39!GO:0046907;intracellular transport;4.45959389457702e-38!GO:0008380;RNA splicing;7.41861138451687e-38!GO:0006996;organelle organization and biogenesis;8.51957762854618e-35!GO:0006397;mRNA processing;1.45343995880453e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.52319932305e-33!GO:0065003;macromolecular complex assembly;6.69138659855704e-33!GO:0043228;non-membrane-bound organelle;9.76133516389927e-33!GO:0043232;intracellular non-membrane-bound organelle;9.76133516389927e-33!GO:0006886;intracellular protein transport;8.63756397564556e-31!GO:0022607;cellular component assembly;1.48827596605923e-30!GO:0005740;mitochondrial envelope;5.05783378019747e-30!GO:0006259;DNA metabolic process;2.41977576195292e-29!GO:0005654;nucleoplasm;8.04920677521097e-29!GO:0031966;mitochondrial membrane;1.6184011389491e-28!GO:0003676;nucleic acid binding;9.0971567906376e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.0670777715952e-27!GO:0019866;organelle inner membrane;2.45021874893792e-27!GO:0005681;spliceosome;1.09771201197253e-26!GO:0000166;nucleotide binding;1.10937194064471e-26!GO:0016462;pyrophosphatase activity;5.91927963023788e-26!GO:0007049;cell cycle;7.44515407846476e-26!GO:0017111;nucleoside-triphosphatase activity;7.97000157230201e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.99678474844732e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;1.26219748566418e-25!GO:0051649;establishment of cellular localization;2.31510394208728e-25!GO:0005743;mitochondrial inner membrane;2.81588531132405e-25!GO:0051641;cellular localization;4.65294566372382e-25!GO:0044451;nucleoplasm part;1.24119042482177e-23!GO:0044445;cytosolic part;1.25287183469246e-23!GO:0031980;mitochondrial lumen;9.20231634124233e-22!GO:0005759;mitochondrial matrix;9.20231634124233e-22!GO:0012505;endomembrane system;1.28850258518025e-21!GO:0006119;oxidative phosphorylation;1.69087640269971e-21!GO:0015934;large ribosomal subunit;3.2170435737644e-21!GO:0016874;ligase activity;1.7446727993776e-20!GO:0005730;nucleolus;1.88702828174059e-20!GO:0016070;RNA metabolic process;3.0611045955818e-20!GO:0006457;protein folding;6.2152054353745e-20!GO:0044265;cellular macromolecule catabolic process;1.28665122177165e-19!GO:0015935;small ribosomal subunit;1.8245188249812e-19!GO:0032553;ribonucleotide binding;1.96049898364806e-19!GO:0032555;purine ribonucleotide binding;1.96049898364806e-19!GO:0022402;cell cycle process;3.32271380916378e-19!GO:0006512;ubiquitin cycle;3.81368558040926e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;6.47587887213198e-19!GO:0017076;purine nucleotide binding;9.40136204567418e-19!GO:0019941;modification-dependent protein catabolic process;1.03468488949035e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.03468488949035e-18!GO:0051186;cofactor metabolic process;1.23032316258928e-18!GO:0044257;cellular protein catabolic process;1.98224804783333e-18!GO:0044455;mitochondrial membrane part;2.11666739330558e-18!GO:0048770;pigment granule;2.60987175376152e-18!GO:0042470;melanosome;2.60987175376152e-18!GO:0006511;ubiquitin-dependent protein catabolic process;2.60987175376152e-18!GO:0000502;proteasome complex (sensu Eukaryota);2.68702386611304e-18!GO:0000278;mitotic cell cycle;4.42872031054322e-18!GO:0006974;response to DNA damage stimulus;9.72097480961848e-18!GO:0022618;protein-RNA complex assembly;1.0305251447269e-17!GO:0044248;cellular catabolic process;1.17439463006422e-17!GO:0005783;endoplasmic reticulum;2.2671792366899e-17!GO:0043285;biopolymer catabolic process;3.02347333466559e-17!GO:0008134;transcription factor binding;4.67750567126468e-17!GO:0009057;macromolecule catabolic process;1.66071975675112e-16!GO:0042254;ribosome biogenesis and assembly;1.79966456560278e-16!GO:0005761;mitochondrial ribosome;3.834725474528e-16!GO:0000313;organellar ribosome;3.834725474528e-16!GO:0008135;translation factor activity, nucleic acid binding;5.24711260318759e-16!GO:0005524;ATP binding;6.29876707365409e-16!GO:0032559;adenyl ribonucleotide binding;7.87201451207045e-16!GO:0005746;mitochondrial respiratory chain;4.42119930204912e-15!GO:0030554;adenyl nucleotide binding;5.4721532593218e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.13640767706874e-15!GO:0030163;protein catabolic process;7.42213970813372e-15!GO:0006605;protein targeting;9.13375324260349e-15!GO:0005694;chromosome;1.30608839767556e-14!GO:0044432;endoplasmic reticulum part;1.33835963637234e-14!GO:0006281;DNA repair;1.56075597095038e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.20124059100515e-14!GO:0051082;unfolded protein binding;2.57166440904186e-14!GO:0016887;ATPase activity;2.96142977156903e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.97194103843337e-14!GO:0003954;NADH dehydrogenase activity;2.97194103843337e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.97194103843337e-14!GO:0006732;coenzyme metabolic process;3.03472183884523e-14!GO:0048193;Golgi vesicle transport;4.13258433026543e-14!GO:0005794;Golgi apparatus;5.87235727357926e-14!GO:0022403;cell cycle phase;7.8596649889851e-14!GO:0042623;ATPase activity, coupled;9.88371498280096e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17345605404353e-13!GO:0044427;chromosomal part;2.13863288183562e-13!GO:0005635;nuclear envelope;2.17492278371005e-13!GO:0004386;helicase activity;2.61654971789693e-13!GO:0000087;M phase of mitotic cell cycle;3.08643729980747e-13!GO:0009719;response to endogenous stimulus;4.10397271514939e-13!GO:0051301;cell division;4.55780576139207e-13!GO:0007067;mitosis;5.05885612285255e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;5.2863344479947e-13!GO:0000375;RNA splicing, via transesterification reactions;5.2863344479947e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.2863344479947e-13!GO:0044453;nuclear membrane part;7.0086048686419e-13!GO:0016192;vesicle-mediated transport;1.03368449780763e-12!GO:0012501;programmed cell death;1.05464462562835e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.10676536831647e-12!GO:0009055;electron carrier activity;1.36910441480366e-12!GO:0006915;apoptosis;2.10112726020202e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.12960954739666e-12!GO:0042773;ATP synthesis coupled electron transport;2.12960954739666e-12!GO:0003743;translation initiation factor activity;2.21851645644268e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.62215578067937e-12!GO:0045271;respiratory chain complex I;2.62215578067937e-12!GO:0005747;mitochondrial respiratory chain complex I;2.62215578067937e-12!GO:0031965;nuclear membrane;2.99957569247764e-12!GO:0043412;biopolymer modification;5.60123651635141e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.2812295349054e-12!GO:0006260;DNA replication;7.02247094982178e-12!GO:0006399;tRNA metabolic process;9.50412121472331e-12!GO:0051276;chromosome organization and biogenesis;1.07466101963144e-11!GO:0008026;ATP-dependent helicase activity;1.21228805904149e-11!GO:0003712;transcription cofactor activity;1.37386649462959e-11!GO:0006413;translational initiation;1.70533775297698e-11!GO:0009259;ribonucleotide metabolic process;2.32650641617743e-11!GO:0008219;cell death;2.99835174019732e-11!GO:0016265;death;2.99835174019732e-11!GO:0008639;small protein conjugating enzyme activity;3.37111538303918e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.71900054789401e-11!GO:0006366;transcription from RNA polymerase II promoter;4.11032680472514e-11!GO:0016604;nuclear body;4.38997375392634e-11!GO:0000279;M phase;5.33272063659246e-11!GO:0006913;nucleocytoplasmic transport;7.4037243461225e-11!GO:0006364;rRNA processing;8.74523118633267e-11!GO:0004842;ubiquitin-protein ligase activity;1.02479238545269e-10!GO:0005789;endoplasmic reticulum membrane;1.48742326716966e-10!GO:0016072;rRNA metabolic process;1.62839582712548e-10!GO:0051169;nuclear transport;1.81761350719578e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.94798396841875e-10!GO:0006464;protein modification process;2.19564281866729e-10!GO:0006163;purine nucleotide metabolic process;2.36062101049071e-10!GO:0019787;small conjugating protein ligase activity;2.51990691708778e-10!GO:0005643;nuclear pore;2.77880592324756e-10!GO:0009150;purine ribonucleotide metabolic process;4.3981928832914e-10!GO:0009056;catabolic process;4.55770570822057e-10!GO:0065002;intracellular protein transport across a membrane;4.68416801406144e-10!GO:0006446;regulation of translational initiation;5.64584653122295e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.80826031284813e-10!GO:0009260;ribonucleotide biosynthetic process;5.89397215662611e-10!GO:0051726;regulation of cell cycle;6.93154809763187e-10!GO:0006461;protein complex assembly;7.30694949226205e-10!GO:0000074;regulation of progression through cell cycle;9.41102127893538e-10!GO:0051188;cofactor biosynthetic process;1.31003595186132e-09!GO:0008565;protein transporter activity;1.50893662929262e-09!GO:0006164;purine nucleotide biosynthetic process;1.86582458942284e-09!GO:0016881;acid-amino acid ligase activity;2.26664595046701e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.27303349054989e-09!GO:0050794;regulation of cellular process;2.40068492609085e-09!GO:0006403;RNA localization;2.62556383716125e-09!GO:0050657;nucleic acid transport;2.62556383716125e-09!GO:0051236;establishment of RNA localization;2.62556383716125e-09!GO:0050658;RNA transport;2.62556383716125e-09!GO:0043687;post-translational protein modification;2.8945714112221e-09!GO:0005793;ER-Golgi intermediate compartment;2.90394923868603e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.33872578146117e-09!GO:0043067;regulation of programmed cell death;3.62411207948246e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.91249872414557e-09!GO:0003924;GTPase activity;4.0785935909893e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.18327117178961e-09!GO:0065004;protein-DNA complex assembly;4.20385762596762e-09!GO:0042981;regulation of apoptosis;4.43851473035007e-09!GO:0009141;nucleoside triphosphate metabolic process;4.94207631121326e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.00374359732823e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.00374359732823e-09!GO:0051246;regulation of protein metabolic process;5.37611597054916e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.41424761704977e-09!GO:0046930;pore complex;6.82242663447538e-09!GO:0007005;mitochondrion organization and biogenesis;9.21967715249874e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.12452953668376e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.12452953668376e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.12452953668376e-08!GO:0006323;DNA packaging;1.16008218347724e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.44121310651435e-08!GO:0015986;ATP synthesis coupled proton transport;1.70264578692298e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.70264578692298e-08!GO:0046034;ATP metabolic process;1.81837399819812e-08!GO:0016779;nucleotidyltransferase activity;2.20274104963319e-08!GO:0017038;protein import;2.38144132370486e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.85814625125962e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.85814625125962e-08!GO:0048523;negative regulation of cellular process;2.85886728265122e-08!GO:0009060;aerobic respiration;3.04336845521661e-08!GO:0005768;endosome;3.04589117539464e-08!GO:0043038;amino acid activation;4.29657565330908e-08!GO:0006418;tRNA aminoacylation for protein translation;4.29657565330908e-08!GO:0043039;tRNA aminoacylation;4.29657565330908e-08!GO:0048475;coated membrane;4.43765516377727e-08!GO:0030117;membrane coat;4.43765516377727e-08!GO:0016607;nuclear speck;4.44558818325009e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.04415827895991e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.4597329361474e-08!GO:0005839;proteasome core complex (sensu Eukaryota);5.88463364743718e-08!GO:0009108;coenzyme biosynthetic process;5.93445782454627e-08!GO:0016491;oxidoreductase activity;6.38656693527447e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.38656693527447e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.38656693527447e-08!GO:0005667;transcription factor complex;6.48168855550147e-08!GO:0030120;vesicle coat;7.55851414364731e-08!GO:0030662;coated vesicle membrane;7.55851414364731e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.13989081583939e-08!GO:0009117;nucleotide metabolic process;1.04059355136075e-07!GO:0045333;cellular respiration;1.11475220702526e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.45440593430364e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.66768768427857e-07!GO:0051028;mRNA transport;1.68974306998271e-07!GO:0019829;cation-transporting ATPase activity;1.75550146944585e-07!GO:0000785;chromatin;1.78712447138764e-07!GO:0006754;ATP biosynthetic process;2.07668596949852e-07!GO:0006753;nucleoside phosphate metabolic process;2.07668596949852e-07!GO:0006333;chromatin assembly or disassembly;2.12173154702704e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.291328975307e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.60213983163242e-07!GO:0015630;microtubule cytoskeleton;2.94707652350477e-07!GO:0032446;protein modification by small protein conjugation;3.11353193892676e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.193876275724e-07!GO:0016787;hydrolase activity;3.44953761403492e-07!GO:0003724;RNA helicase activity;3.77305913650427e-07!GO:0016567;protein ubiquitination;3.99131035625295e-07!GO:0048519;negative regulation of biological process;4.86072791035974e-07!GO:0004298;threonine endopeptidase activity;5.62307422518996e-07!GO:0016740;transferase activity;6.70193726324792e-07!GO:0043069;negative regulation of programmed cell death;6.89236636411654e-07!GO:0043566;structure-specific DNA binding;8.12448932508859e-07!GO:0003697;single-stranded DNA binding;8.95301642394913e-07!GO:0003714;transcription corepressor activity;1.22612272042506e-06!GO:0016564;transcription repressor activity;1.39033183385376e-06!GO:0006099;tricarboxylic acid cycle;1.39033183385376e-06!GO:0046356;acetyl-CoA catabolic process;1.39033183385376e-06!GO:0043066;negative regulation of apoptosis;1.50950687195382e-06!GO:0031988;membrane-bound vesicle;1.57883502344207e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.59452013773482e-06!GO:0006084;acetyl-CoA metabolic process;2.2481167671777e-06!GO:0005762;mitochondrial large ribosomal subunit;2.41339815824047e-06!GO:0000315;organellar large ribosomal subunit;2.41339815824047e-06!GO:0008654;phospholipid biosynthetic process;2.64327808720184e-06!GO:0044431;Golgi apparatus part;2.96300439077523e-06!GO:0005819;spindle;3.03034404757706e-06!GO:0005525;GTP binding;3.30953609783308e-06!GO:0005773;vacuole;4.05935780618219e-06!GO:0000151;ubiquitin ligase complex;4.93145193570622e-06!GO:0051187;cofactor catabolic process;5.18508020429031e-06!GO:0000245;spliceosome assembly;5.41393502411754e-06!GO:0006916;anti-apoptosis;5.85368070596161e-06!GO:0005788;endoplasmic reticulum lumen;6.1858998191658e-06!GO:0006752;group transfer coenzyme metabolic process;6.86306067003053e-06!GO:0045259;proton-transporting ATP synthase complex;6.95238527850582e-06!GO:0051427;hormone receptor binding;8.20793334781721e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.7035693932894e-06!GO:0006091;generation of precursor metabolites and energy;9.45318705734987e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.04177382511622e-05!GO:0050789;regulation of biological process;1.04959575984018e-05!GO:0045454;cell redox homeostasis;1.06922077062857e-05!GO:0031982;vesicle;1.10516147629112e-05!GO:0016568;chromatin modification;1.11584963116089e-05!GO:0019222;regulation of metabolic process;1.15012213087095e-05!GO:0005798;Golgi-associated vesicle;1.15722912983015e-05!GO:0006414;translational elongation;1.22343553155781e-05!GO:0043623;cellular protein complex assembly;1.2288672017432e-05!GO:0051329;interphase of mitotic cell cycle;1.28751806705655e-05!GO:0009109;coenzyme catabolic process;1.28751806705655e-05!GO:0006613;cotranslational protein targeting to membrane;1.39589100880351e-05!GO:0031410;cytoplasmic vesicle;1.4322487795849e-05!GO:0008186;RNA-dependent ATPase activity;1.46721852982737e-05!GO:0006334;nucleosome assembly;1.50620957689339e-05!GO:0007051;spindle organization and biogenesis;1.56668816438713e-05!GO:0051325;interphase;1.70659119291069e-05!GO:0051170;nuclear import;1.8561937252291e-05!GO:0035257;nuclear hormone receptor binding;1.85873775838029e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.88412731323459e-05!GO:0031968;organelle outer membrane;1.97682677182486e-05!GO:0031497;chromatin assembly;2.24325831991936e-05!GO:0016853;isomerase activity;2.28699435894113e-05!GO:0044440;endosomal part;2.52503589625479e-05!GO:0010008;endosome membrane;2.52503589625479e-05!GO:0006261;DNA-dependent DNA replication;2.52968859546501e-05!GO:0005813;centrosome;2.66244024649739e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.80661429320088e-05!GO:0051168;nuclear export;2.96982150724142e-05!GO:0030867;rough endoplasmic reticulum membrane;3.22798133034621e-05!GO:0003713;transcription coactivator activity;3.27186665467375e-05!GO:0005770;late endosome;3.31926630881173e-05!GO:0019867;outer membrane;3.4045599209675e-05!GO:0031324;negative regulation of cellular metabolic process;3.89088189182018e-05!GO:0004004;ATP-dependent RNA helicase activity;4.38980541976337e-05!GO:0006606;protein import into nucleus;4.86182502959158e-05!GO:0000139;Golgi membrane;4.86224039775383e-05!GO:0000323;lytic vacuole;5.14683045782749e-05!GO:0005764;lysosome;5.14683045782749e-05!GO:0032561;guanyl ribonucleotide binding;5.17446744200192e-05!GO:0019001;guanyl nucleotide binding;5.17446744200192e-05!GO:0016563;transcription activator activity;5.45489779516326e-05!GO:0003899;DNA-directed RNA polymerase activity;5.6258129062802e-05!GO:0048522;positive regulation of cellular process;5.73791974330979e-05!GO:0019843;rRNA binding;5.75703037697162e-05!GO:0006612;protein targeting to membrane;6.75175205264857e-05!GO:0000775;chromosome, pericentric region;7.31701219212422e-05!GO:0005815;microtubule organizing center;7.71816754074008e-05!GO:0008033;tRNA processing;7.73180589616916e-05!GO:0000314;organellar small ribosomal subunit;8.53277187978482e-05!GO:0005763;mitochondrial small ribosomal subunit;8.53277187978482e-05!GO:0005657;replication fork;0.000105452149153759!GO:0044452;nucleolar part;0.000106124277128911!GO:0005048;signal sequence binding;0.000107957391790753!GO:0006839;mitochondrial transport;0.000111489071689439!GO:0005769;early endosome;0.000111528471762263!GO:0005741;mitochondrial outer membrane;0.00011868086014783!GO:0043021;ribonucleoprotein binding;0.000120110229189886!GO:0005905;coated pit;0.000124876114317952!GO:0015980;energy derivation by oxidation of organic compounds;0.000125518983362929!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000144053646453158!GO:0045786;negative regulation of progression through cell cycle;0.000157846452701153!GO:0043681;protein import into mitochondrion;0.000179911596808828!GO:0006626;protein targeting to mitochondrion;0.000182462980609597!GO:0051789;response to protein stimulus;0.000183793615926664!GO:0006986;response to unfolded protein;0.000183793615926664!GO:0030880;RNA polymerase complex;0.000194066558924259!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000200549057480268!GO:0015399;primary active transmembrane transporter activity;0.000200549057480268!GO:0043284;biopolymer biosynthetic process;0.000206234665808042!GO:0019899;enzyme binding;0.000209083221654411!GO:0007243;protein kinase cascade;0.000223521317599355!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000234780997708137!GO:0009892;negative regulation of metabolic process;0.000258637940768863!GO:0009165;nucleotide biosynthetic process;0.000300072762397223!GO:0008632;apoptotic program;0.000300617356913347!GO:0016859;cis-trans isomerase activity;0.000305981824860947!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000317074747793968!GO:0030663;COPI coated vesicle membrane;0.000321760938553589!GO:0030126;COPI vesicle coat;0.000321760938553589!GO:0006352;transcription initiation;0.000354038512686825!GO:0007010;cytoskeleton organization and biogenesis;0.000385320955468476!GO:0000075;cell cycle checkpoint;0.000423729100045493!GO:0006793;phosphorus metabolic process;0.000437975792929309!GO:0006796;phosphate metabolic process;0.000437975792929309!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000449063938976102!GO:0000428;DNA-directed RNA polymerase complex;0.000449063938976102!GO:0008094;DNA-dependent ATPase activity;0.000481752276819714!GO:0003729;mRNA binding;0.00050762611188084!GO:0030036;actin cytoskeleton organization and biogenesis;0.00050762611188084!GO:0008250;oligosaccharyl transferase complex;0.000507955208352065!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000510433494129228!GO:0033116;ER-Golgi intermediate compartment membrane;0.000555058215442654!GO:0030659;cytoplasmic vesicle membrane;0.000582458880821694!GO:0046467;membrane lipid biosynthetic process;0.000645144702419019!GO:0005885;Arp2/3 protein complex;0.000659396131796919!GO:0006891;intra-Golgi vesicle-mediated transport;0.000678775551527089!GO:0031252;leading edge;0.00071734962970861!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000723823814742834!GO:0051920;peroxiredoxin activity;0.000735465394613413!GO:0048471;perinuclear region of cytoplasm;0.000774143582792508!GO:0030137;COPI-coated vesicle;0.000849791797605537!GO:0046474;glycerophospholipid biosynthetic process;0.00086905755475002!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000895954342496376!GO:0016310;phosphorylation;0.000902466036087102!GO:0046483;heterocycle metabolic process;0.000970802178429256!GO:0016197;endosome transport;0.00100635632192793!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00103683367932989!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0010971891023919!GO:0044433;cytoplasmic vesicle part;0.00112855881467601!GO:0051540;metal cluster binding;0.00115507250147739!GO:0051536;iron-sulfur cluster binding;0.00115507250147739!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00120141384802248!GO:0016481;negative regulation of transcription;0.00121376502794784!GO:0007006;mitochondrial membrane organization and biogenesis;0.00131007571939034!GO:0031323;regulation of cellular metabolic process;0.00131362061991075!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131362061991075!GO:0000049;tRNA binding;0.00131362061991075!GO:0006302;double-strand break repair;0.00131915269261957!GO:0008610;lipid biosynthetic process;0.00133989878272755!GO:0048487;beta-tubulin binding;0.00135801323015645!GO:0044262;cellular carbohydrate metabolic process;0.0013603346501438!GO:0016363;nuclear matrix;0.00138988682545961!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00139887318467941!GO:0042802;identical protein binding;0.00140320359710995!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00146592055191337!GO:0051087;chaperone binding;0.00158035527195237!GO:0004576;oligosaccharyl transferase activity;0.00161871651521728!GO:0006401;RNA catabolic process;0.00163738453845403!GO:0030133;transport vesicle;0.00164733389121374!GO:0006402;mRNA catabolic process;0.0017100424024245!GO:0003678;DNA helicase activity;0.00172520356630179!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00172520356630179!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00172520356630179!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00172520356630179!GO:0030118;clathrin coat;0.00173014724893373!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00176057384214024!GO:0016126;sterol biosynthetic process;0.00179825923619294!GO:0007059;chromosome segregation;0.00187175309893161!GO:0031072;heat shock protein binding;0.00193977409069681!GO:0000082;G1/S transition of mitotic cell cycle;0.00199021247186981!GO:0051052;regulation of DNA metabolic process;0.0020277714464742!GO:0016251;general RNA polymerase II transcription factor activity;0.00204548852097702!GO:0003682;chromatin binding;0.00204548852097702!GO:0019752;carboxylic acid metabolic process;0.00205718489975981!GO:0006740;NADPH regeneration;0.00205718489975981!GO:0006098;pentose-phosphate shunt;0.00205718489975981!GO:0018196;peptidyl-asparagine modification;0.00206570247977622!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00206570247977622!GO:0008361;regulation of cell size;0.00210375702900338!GO:0016044;membrane organization and biogenesis;0.00210491732782436!GO:0051252;regulation of RNA metabolic process;0.00212831625314103!GO:0007052;mitotic spindle organization and biogenesis;0.00213445984403449!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00215930279698914!GO:0048500;signal recognition particle;0.00216604826099166!GO:0006405;RNA export from nucleus;0.00219780268685634!GO:0006082;organic acid metabolic process;0.00226989346091188!GO:0008234;cysteine-type peptidase activity;0.00229586810869537!GO:0012506;vesicle membrane;0.0023171996956909!GO:0016049;cell growth;0.00253673803601847!GO:0046489;phosphoinositide biosynthetic process;0.00273038796301553!GO:0008312;7S RNA binding;0.0027948334233791!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00279628601734436!GO:0008139;nuclear localization sequence binding;0.00279628601734436!GO:0005684;U2-dependent spliceosome;0.00284833301212512!GO:0015992;proton transport;0.00285144774823485!GO:0006417;regulation of translation;0.00305595340429728!GO:0032508;DNA duplex unwinding;0.0031635344988612!GO:0032392;DNA geometric change;0.0031635344988612!GO:0006818;hydrogen transport;0.00326766533643845!GO:0043492;ATPase activity, coupled to movement of substances;0.00339433697653408!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00343994034440955!GO:0006383;transcription from RNA polymerase III promoter;0.0035358815503094!GO:0016272;prefoldin complex;0.00363086605212981!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00370418709493427!GO:0065007;biological regulation;0.00376088499345522!GO:0006595;polyamine metabolic process;0.00383017299327823!GO:0030132;clathrin coat of coated pit;0.00396870454756064!GO:0005791;rough endoplasmic reticulum;0.00397627088960478!GO:0005669;transcription factor TFIID complex;0.00397627088960478!GO:0051539;4 iron, 4 sulfur cluster binding;0.00414927680315216!GO:0004527;exonuclease activity;0.00422102112109078!GO:0003690;double-stranded DNA binding;0.00427106620947525!GO:0030029;actin filament-based process;0.00428380210605912!GO:0035258;steroid hormone receptor binding;0.00428535898733269!GO:0006979;response to oxidative stress;0.00436547212275797!GO:0046519;sphingoid metabolic process;0.00440902896304461!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00448005355045565!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00452870024173548!GO:0006672;ceramide metabolic process;0.00454001524391036!GO:0005637;nuclear inner membrane;0.00486921390609191!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00501935301436761!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00502231851196978!GO:0045047;protein targeting to ER;0.00502231851196978!GO:0030658;transport vesicle membrane;0.00512328685542405!GO:0048518;positive regulation of biological process;0.00512338366376858!GO:0046966;thyroid hormone receptor binding;0.00518491116102629!GO:0045941;positive regulation of transcription;0.00518506970677946!GO:0006520;amino acid metabolic process;0.00520739910643363!GO:0007093;mitotic cell cycle checkpoint;0.00533769699799584!GO:0009116;nucleoside metabolic process;0.00537678192398892!GO:0003684;damaged DNA binding;0.00541780939354774!GO:0030134;ER to Golgi transport vesicle;0.00559352311572834!GO:0006733;oxidoreduction coenzyme metabolic process;0.0056159913366455!GO:0006695;cholesterol biosynthetic process;0.0056159913366455!GO:0050662;coenzyme binding;0.00562810772347082!GO:0007021;tubulin folding;0.00563220211301363!GO:0003746;translation elongation factor activity;0.00577299494864198!GO:0031625;ubiquitin protein ligase binding;0.00584528469687706!GO:0022890;inorganic cation transmembrane transporter activity;0.00590112209258356!GO:0019206;nucleoside kinase activity;0.00610774238295798!GO:0043065;positive regulation of apoptosis;0.00640772734601207!GO:0045893;positive regulation of transcription, DNA-dependent;0.00647984667801767!GO:0005874;microtubule;0.00647984667801767!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00647984667801767!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00647984667801767!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00651047280271296!GO:0001558;regulation of cell growth;0.0065946447812939!GO:0006350;transcription;0.00667437921832419!GO:0006739;NADP metabolic process;0.00667865963722691!GO:0000059;protein import into nucleus, docking;0.00702880578198827!GO:0007088;regulation of mitosis;0.00702880578198827!GO:0009112;nucleobase metabolic process;0.00706358392119881!GO:0030521;androgen receptor signaling pathway;0.00734394219170273!GO:0003702;RNA polymerase II transcription factor activity;0.00758230154553113!GO:0015631;tubulin binding;0.00758753861136147!GO:0043068;positive regulation of programmed cell death;0.00761601961365788!GO:0006310;DNA recombination;0.00806705509420021!GO:0045045;secretory pathway;0.00830180548714141!GO:0003711;transcription elongation regulator activity;0.0083326290547444!GO:0006950;response to stress;0.00867007640194343!GO:0065009;regulation of a molecular function;0.00877426749742304!GO:0006268;DNA unwinding during replication;0.00888078582099879!GO:0006118;electron transport;0.00889585066179732!GO:0031970;organelle envelope lumen;0.00889850733653634!GO:0006767;water-soluble vitamin metabolic process;0.00894931493559594!GO:0000776;kinetochore;0.00895103095861213!GO:0009967;positive regulation of signal transduction;0.00906670308259538!GO:0030127;COPII vesicle coat;0.00914172412532409!GO:0012507;ER to Golgi transport vesicle membrane;0.00914172412532409!GO:0006611;protein export from nucleus;0.00925537612959353!GO:0000339;RNA cap binding;0.00957327334466526!GO:0051287;NAD binding;0.00973273446375396!GO:0043022;ribosome binding;0.00979043393417708!GO:0006497;protein amino acid lipidation;0.0100832783536665!GO:0017166;vinculin binding;0.0101251904121768!GO:0006892;post-Golgi vesicle-mediated transport;0.0101251904121768!GO:0030660;Golgi-associated vesicle membrane;0.0102885615855416!GO:0031326;regulation of cellular biosynthetic process;0.0103071194121592!GO:0006144;purine base metabolic process;0.0103071194121592!GO:0006650;glycerophospholipid metabolic process;0.0104016207893437!GO:0005832;chaperonin-containing T-complex;0.0113533742376886!GO:0001726;ruffle;0.0114326430463397!GO:0043596;nuclear replication fork;0.0116784988053402!GO:0030176;integral to endoplasmic reticulum membrane;0.0120054961768877!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.012190667571095!GO:0015002;heme-copper terminal oxidase activity;0.012190667571095!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.012190667571095!GO:0004129;cytochrome-c oxidase activity;0.012190667571095!GO:0007017;microtubule-based process;0.0123793103204703!GO:0004177;aminopeptidase activity;0.0124354310026641!GO:0030031;cell projection biogenesis;0.0125252295201897!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0127761838618865!GO:0000209;protein polyubiquitination;0.0129596513006204!GO:0007040;lysosome organization and biogenesis;0.0130059853268547!GO:0009889;regulation of biosynthetic process;0.0130059853268547!GO:0043488;regulation of mRNA stability;0.0137544300463316!GO:0043487;regulation of RNA stability;0.0137544300463316!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0138787928294424!GO:0033559;unsaturated fatty acid metabolic process;0.0138787928294424!GO:0006636;unsaturated fatty acid biosynthetic process;0.0138787928294424!GO:0006984;ER-nuclear signaling pathway;0.0141433218768915!GO:0050681;androgen receptor binding;0.0143694391749617!GO:0000786;nucleosome;0.0145155201328575!GO:0005774;vacuolar membrane;0.0147464007980542!GO:0010468;regulation of gene expression;0.0147464007980542!GO:0006778;porphyrin metabolic process;0.0151107045908188!GO:0033013;tetrapyrrole metabolic process;0.0151107045908188!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0151204224053908!GO:0006007;glucose catabolic process;0.0154163266205491!GO:0016741;transferase activity, transferring one-carbon groups;0.0155360013123875!GO:0046983;protein dimerization activity;0.0156469072171201!GO:0006769;nicotinamide metabolic process;0.0157107239263492!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163939744776555!GO:0008168;methyltransferase activity;0.0164474735081472!GO:0030503;regulation of cell redox homeostasis;0.0165387696380079!GO:0008408;3'-5' exonuclease activity;0.0166792873173075!GO:0007050;cell cycle arrest;0.016710882079542!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0170389312114046!GO:0030119;AP-type membrane coat adaptor complex;0.0170592405682638!GO:0031529;ruffle organization and biogenesis;0.0171072850299739!GO:0004197;cysteine-type endopeptidase activity;0.0174564087919846!GO:0005758;mitochondrial intermembrane space;0.0175114506711136!GO:0008022;protein C-terminus binding;0.0178428050904232!GO:0007030;Golgi organization and biogenesis;0.0183128764980032!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0187093666231378!GO:0005869;dynactin complex;0.0192310057195337!GO:0008180;signalosome;0.0193827050927247!GO:0008538;proteasome activator activity;0.0194225805707077!GO:0031902;late endosome membrane;0.0200850893050525!GO:0005862;muscle thin filament tropomyosin;0.0211568449713641!GO:0022411;cellular component disassembly;0.0212413590763418!GO:0031124;mRNA 3'-end processing;0.0212499826041706!GO:0006807;nitrogen compound metabolic process;0.0214612349832806!GO:0050811;GABA receptor binding;0.0221407507780346!GO:0004532;exoribonuclease activity;0.0221407507780346!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0221407507780346!GO:0005876;spindle microtubule;0.0221595258249822!GO:0030032;lamellipodium biogenesis;0.0221595258249822!GO:0042158;lipoprotein biosynthetic process;0.022163203606265!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.022163203606265!GO:0006749;glutathione metabolic process;0.022477371682033!GO:0032984;macromolecular complex disassembly;0.0225580275422879!GO:0030833;regulation of actin filament polymerization;0.0225935914906319!GO:0006506;GPI anchor biosynthetic process;0.0230487335871785!GO:0007034;vacuolar transport;0.0235594176793426!GO:0006376;mRNA splice site selection;0.0236912410203466!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0236912410203466!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0237290606039142!GO:0030125;clathrin vesicle coat;0.0244108039305002!GO:0030665;clathrin coated vesicle membrane;0.0244108039305002!GO:0007033;vacuole organization and biogenesis;0.0250737261044394!GO:0000096;sulfur amino acid metabolic process;0.0253839723985907!GO:0042770;DNA damage response, signal transduction;0.0254246154369329!GO:0019783;small conjugating protein-specific protease activity;0.0255793554866251!GO:0030131;clathrin adaptor complex;0.0256871899222115!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0257210687566465!GO:0043130;ubiquitin binding;0.0258771899860832!GO:0032182;small conjugating protein binding;0.0258771899860832!GO:0004674;protein serine/threonine kinase activity;0.0259113258909202!GO:0004003;ATP-dependent DNA helicase activity;0.0262815017509647!GO:0007346;regulation of progression through mitotic cell cycle;0.0263903119779923!GO:0006220;pyrimidine nucleotide metabolic process;0.0268102930966676!GO:0006643;membrane lipid metabolic process;0.0269943951647377!GO:0008320;protein transmembrane transporter activity;0.0270208149096603!GO:0019362;pyridine nucleotide metabolic process;0.0270905802836006!GO:0000922;spindle pole;0.027843760928546!GO:0031901;early endosome membrane;0.027843760928546!GO:0022884;macromolecule transmembrane transporter activity;0.027843760928546!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.027843760928546!GO:0004518;nuclease activity;0.027843760928546!GO:0015036;disulfide oxidoreductase activity;0.0280366160333517!GO:0008383;manganese superoxide dismutase activity;0.0282761238377237!GO:0001315;age-dependent response to reactive oxygen species;0.0282761238377237!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0285263762565559!GO:0030041;actin filament polymerization;0.0289892638293004!GO:0009451;RNA modification;0.0292446072041633!GO:0048037;cofactor binding;0.0292541798274015!GO:0035035;histone acetyltransferase binding;0.0297350611840757!GO:0006338;chromatin remodeling;0.0300077565622166!GO:0045892;negative regulation of transcription, DNA-dependent;0.0304453239882652!GO:0000228;nuclear chromosome;0.0304492436408356!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0306835130695852!GO:0048468;cell development;0.031019825322277!GO:0030384;phosphoinositide metabolic process;0.031019825322277!GO:0044437;vacuolar part;0.0310314458855711!GO:0030518;steroid hormone receptor signaling pathway;0.0310464076234204!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0311807684610465!GO:0006360;transcription from RNA polymerase I promoter;0.0314628733578052!GO:0043241;protein complex disassembly;0.031552628476691!GO:0043189;H4/H2A histone acetyltransferase complex;0.0318070757292505!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0320457930055413!GO:0046128;purine ribonucleoside metabolic process;0.0320718052079558!GO:0042278;purine nucleoside metabolic process;0.0320718052079558!GO:0004843;ubiquitin-specific protease activity;0.0323387740268302!GO:0009303;rRNA transcription;0.0325336514828518!GO:0042168;heme metabolic process;0.0327041360580654!GO:0043624;cellular protein complex disassembly;0.0327041360580654!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0331927183500736!GO:0009124;nucleoside monophosphate biosynthetic process;0.0340872884639307!GO:0009123;nucleoside monophosphate metabolic process;0.0340872884639307!GO:0016790;thiolester hydrolase activity;0.0341924237130524!GO:0006275;regulation of DNA replication;0.0341924237130524!GO:0008637;apoptotic mitochondrial changes;0.0341924237130524!GO:0051881;regulation of mitochondrial membrane potential;0.0343832678603887!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0345070646128844!GO:0010257;NADH dehydrogenase complex assembly;0.0345070646128844!GO:0033108;mitochondrial respiratory chain complex assembly;0.0345070646128844!GO:0006505;GPI anchor metabolic process;0.0346998773924284!GO:0030149;sphingolipid catabolic process;0.035171833934369!GO:0007264;small GTPase mediated signal transduction;0.0356770745130373!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.035796528271974!GO:0009308;amine metabolic process;0.0361400849946623!GO:0051128;regulation of cellular component organization and biogenesis;0.0361512213683838!GO:0045185;maintenance of protein localization;0.0361512213683838!GO:0000303;response to superoxide;0.0361512213683838!GO:0006519;amino acid and derivative metabolic process;0.0361512213683838!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0361566280413428!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0362308856954906!GO:0005765;lysosomal membrane;0.0367761519940606!GO:0046822;regulation of nucleocytoplasmic transport;0.0368298567596713!GO:0043433;negative regulation of transcription factor activity;0.0369286559429678!GO:0009081;branched chain family amino acid metabolic process;0.0379743919913361!GO:0047485;protein N-terminus binding;0.0382047180179695!GO:0006458;'de novo' protein folding;0.0382623799861906!GO:0051084;'de novo' posttranslational protein folding;0.0382623799861906!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.038703759463755!GO:0000910;cytokinesis;0.0387247966029425!GO:0004185;serine carboxypeptidase activity;0.0394906452594001!GO:0006779;porphyrin biosynthetic process;0.0395046236462553!GO:0033014;tetrapyrrole biosynthetic process;0.0395046236462553!GO:0009893;positive regulation of metabolic process;0.0396267721579695!GO:0005784;translocon complex;0.0399690354900839!GO:0008092;cytoskeletal protein binding;0.0401251122859209!GO:0035267;NuA4 histone acetyltransferase complex;0.0402281676060645!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0405006069595819!GO:0016407;acetyltransferase activity;0.0407708766084171!GO:0004221;ubiquitin thiolesterase activity;0.0407708766084171!GO:0031461;cullin-RING ubiquitin ligase complex;0.0407943051823226!GO:0006289;nucleotide-excision repair;0.0411804915329151!GO:0006308;DNA catabolic process;0.0414813097414238!GO:0006284;base-excision repair;0.0415973282516708!GO:0044438;microbody part;0.0431327024624692!GO:0044439;peroxisomal part;0.0431327024624692!GO:0008601;protein phosphatase type 2A regulator activity;0.0432983770675558!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0434026185061902!GO:0031371;ubiquitin conjugating enzyme complex;0.0442248683746678!GO:0032507;maintenance of cellular protein localization;0.0442248683746678!GO:0008287;protein serine/threonine phosphatase complex;0.0451487725090468!GO:0009161;ribonucleoside monophosphate metabolic process;0.0451487725090468!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0451487725090468!GO:0030508;thiol-disulfide exchange intermediate activity;0.0451487725090468!GO:0005732;small nucleolar ribonucleoprotein complex;0.0451487725090468!GO:0046982;protein heterodimerization activity;0.0465995143882416!GO:0006378;mRNA polyadenylation;0.0466513685778304!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0466513685778304!GO:0045039;protein import into mitochondrial inner membrane;0.0466513685778304!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0468350580105174!GO:0006596;polyamine biosynthetic process;0.0470927654455823!GO:0051059;NF-kappaB binding;0.0472400459009586!GO:0043601;nuclear replisome;0.0472400459009586!GO:0030894;replisome;0.0472400459009586!GO:0050178;phenylpyruvate tautomerase activity;0.0475697741611725!GO:0022406;membrane docking;0.0477395117354335!GO:0048278;vesicle docking;0.0477395117354335!GO:0051101;regulation of DNA binding;0.0477395117354335!GO:0000123;histone acetyltransferase complex;0.0481458061775728
|sample_id=10858
|sample_id=10858
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=mesothelium
|sample_tissue=mesothelium
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10858-111G3;search_select_hide=table117:FF:10858-111G3
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:mesothelioma cell line:ONE58
Species:Human (Homo sapiens)
Library ID:CNhs13075
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineONE58
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004863
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13075 CAGE DRX007951 DRR008823
Accession ID Hg19

Library idBAMCTSS
CNhs13075 DRZ000248 DRZ001633
Accession ID Hg38

Library idBAMCTSS
CNhs13075 DRZ011598 DRZ012983
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.151
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.268
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.127
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.115
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0283
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0216
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0945
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0246
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.29
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0154
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.173
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.345
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13075

Jaspar motifP-value
MA0002.20.178
MA0003.10.74
MA0004.15.15008e-6
MA0006.10.76
MA0007.10.794
MA0009.10.529
MA0014.10.736
MA0017.10.678
MA0018.20.00364
MA0019.10.674
MA0024.10.208
MA0025.10.128
MA0027.10.495
MA0028.10.0677
MA0029.10.954
MA0030.10.203
MA0031.10.0623
MA0035.20.729
MA0038.10.819
MA0039.20.0926
MA0040.10.947
MA0041.10.171
MA0042.10.406
MA0043.10.00313
MA0046.10.143
MA0047.20.503
MA0048.10.313
MA0050.12.16605e-8
MA0051.14.9194e-8
MA0052.10.0216
MA0055.10.0928
MA0057.10.13
MA0058.12.64064e-6
MA0059.16.53223e-8
MA0060.10.459
MA0061.10.276
MA0062.20.0852
MA0065.20.0189
MA0066.10.262
MA0067.10.969
MA0068.12.40584e-5
MA0069.10.719
MA0070.10.412
MA0071.10.0998
MA0072.10.194
MA0073.10.878
MA0074.10.708
MA0076.10.408
MA0077.10.513
MA0078.10.553
MA0079.20.0265
MA0080.25.67124e-6
MA0081.10.28
MA0083.10.0607
MA0084.10.709
MA0087.10.523
MA0088.10.684
MA0090.10.0384
MA0091.10.927
MA0092.10.379
MA0093.12.54179e-6
MA0099.23.25215e-10
MA0100.10.346
MA0101.10.105
MA0102.20.077
MA0103.10.826
MA0104.23.02731e-5
MA0105.10.206
MA0106.10.982
MA0107.10.0847
MA0108.20.0308
MA0111.10.613
MA0112.20.376
MA0113.10.0502
MA0114.10.0439
MA0115.10.00651
MA0116.10.109
MA0117.10.982
MA0119.10.61
MA0122.10.199
MA0124.10.35
MA0125.10.848
MA0131.10.803
MA0135.10.00882
MA0136.10.00827
MA0137.20.478
MA0138.20.317
MA0139.10.838
MA0140.10.595
MA0141.10.222
MA0142.10.76
MA0143.10.529
MA0144.10.614
MA0145.10.468
MA0146.10.0235
MA0147.11.95628e-6
MA0148.10.897
MA0149.10.00754
MA0150.13.06867e-6
MA0152.10.274
MA0153.10.42
MA0154.10.0937
MA0155.10.545
MA0156.10.726
MA0157.10.79
MA0159.10.0545
MA0160.10.383
MA0162.10.0963
MA0163.10.556
MA0164.10.286
MA0258.10.529
MA0259.10.0105



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13075

Novel motifP-value
10.38
100.179
1000.0064
1010.745
1020.781
1030.444
1040.698
1050.00799
1060.388
1070.41
1080.982
1090.0485
110.738
1100.459
1110.133
1120.756
1130.0992
1140.0846
1150.0532
1160.19
1170.286
1180.0145
1190.936
120.0954
1200.104
1210.507
1220.723
1230.729
1240.484
1250.412
1260.342
1270.235
1280.00877
1290.637
130.00908
1300.636
1310.902
1320.583
1330.495
1340.0302
1350.0528
1360.0888
1370.992
1380.905
1390.185
140.23
1400.822
1410.761
1420.334
1430.322
1440.769
1450.0371
1460.25
1470.344
1480.168
1490.8
150.0309
1500.316
1510.601
1520.0645
1530.133
1540.324
1550.6
1560.547
1570.519
1580.46
1590.653
160.975
1600.797
1610.261
1620.779
1630.158
1640.208
1650.719
1660.898
1670.446
1680.0531
1690.0202
170.686
180.11
190.554
20.575
200.495
210.117
220.376
230.53
240.449
250.993
260.734
270.248
280.199
290.0136
30.617
300.429
310.525
320.293
330.0508
340.105
350.774
360.372
370.0202
380.872
390.917
40.136
400.048
410.157
420.762
430.348
440.0955
450.507
460.928
470.0831
480.278
490.406
50.481
500.776
510.388
520.41
530.302
540.393
550.381
560.421
570.325
580.313
590.132
60.756
600.837
610.0675
620.557
630.813
640.831
650.937
660.0392
670.666
680.896
690.731
70.969
700.663
710.00602
720.981
730.0123
740.352
750.532
760.446
770.562
780.862
790.865
80.0384
800.00991
810.41
820.846
830.748
840.0182
850.218
860.461
870.00831
880.971
890.374
90.0775
900.0617
910.576
920.821
930.154
940.443
950.048
960.903
970.887
980.584
990.335



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13075


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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