FF:11216-116B1: Difference between revisions

Latest revision as of 16:24, 3 June 2020

Name:	Urothelial cells, donor0
Species:	Human (Homo sapiens)
Library ID:	CNhs10843
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bladder
dev stage	NA
sex	NA
age	NA
cell type	urothelial cell
cell line	NA
company	Sciencell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	4325
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005200

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10843		CAGE		DRX008528		DRR009400

Accession ID Hg19

Library id		BAM		CTSS
CNhs10843		DRZ000825		DRZ002210

Accession ID Hg38

Library id		BAM		CTSS
CNhs10843		DRZ012175		DRZ013560

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005200

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10009.GGCTAC		sRNA-Seq		DRX037135		DRR041501

Accession ID Hg19

Library id		BAM		CTSS
SRhi10009.GGCTAC		DRZ007143

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0791
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.138
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.625
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.416
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0627
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.13
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.0898
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.219
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.164
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.178
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.059
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.663
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.988
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.269
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.474
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.453
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.228
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10843

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.317
MA0003.1	MA0003.1	0.951
MA0004.1	MA0004.1	0.126
MA0006.1	MA0006.1	0.02
MA0007.1	MA0007.1	0.959
MA0009.1	MA0009.1	0.207
MA0014.1	MA0014.1	0.184
MA0017.1	MA0017.1	0.498
MA0018.2	MA0018.2	0.00202
MA0019.1	MA0019.1	0.499
MA0024.1	MA0024.1	6.16908e-4
MA0025.1	MA0025.1	0.113
MA0027.1	MA0027.1	0.688
MA0028.1	MA0028.1	0.0676
MA0029.1	MA0029.1	0.156
MA0030.1	MA0030.1	0.407
MA0031.1	MA0031.1	0.85
MA0035.2	MA0035.2	0.901
MA0038.1	MA0038.1	0.562
MA0039.2	MA0039.2	0.00302
MA0040.1	MA0040.1	0.388
MA0041.1	MA0041.1	0.675
MA0042.1	MA0042.1	0.549
MA0043.1	MA0043.1	0.00236
MA0046.1	MA0046.1	0.45
MA0047.2	MA0047.2	0.13
MA0048.1	MA0048.1	0.724
MA0050.1	MA0050.1	0.106
MA0051.1	MA0051.1	0.307
MA0052.1	MA0052.1	0.014
MA0055.1	MA0055.1	0.0139
MA0057.1	MA0057.1	0.0702
MA0058.1	MA0058.1	0.0154
MA0059.1	MA0059.1	0.322
MA0060.1	MA0060.1	0.00615
MA0061.1	MA0061.1	0.656
MA0062.2	MA0062.2	1.81499e-4
MA0065.2	MA0065.2	0.26
MA0066.1	MA0066.1	0.116
MA0067.1	MA0067.1	0.0173
MA0068.1	MA0068.1	0.0247
MA0069.1	MA0069.1	0.492
MA0070.1	MA0070.1	0.77
MA0071.1	MA0071.1	0.541
MA0072.1	MA0072.1	0.892
MA0073.1	MA0073.1	0.527
MA0074.1	MA0074.1	0.613
MA0076.1	MA0076.1	0.0101
MA0077.1	MA0077.1	0.276
MA0078.1	MA0078.1	0.555
MA0079.2	MA0079.2	0.615
MA0080.2	MA0080.2	0.00161
MA0081.1	MA0081.1	0.00605
MA0083.1	MA0083.1	0.96
MA0084.1	MA0084.1	0.107
MA0087.1	MA0087.1	0.782
MA0088.1	MA0088.1	0.293
MA0090.1	MA0090.1	5.25117e-5
MA0091.1	MA0091.1	0.541
MA0092.1	MA0092.1	0.569
MA0093.1	MA0093.1	0.0708
MA0099.2	MA0099.2	1.41735e-10
MA0100.1	MA0100.1	0.269
MA0101.1	MA0101.1	0.675
MA0102.2	MA0102.2	0.102
MA0103.1	MA0103.1	3.10592e-6
MA0104.2	MA0104.2	0.0201
MA0105.1	MA0105.1	0.472
MA0106.1	MA0106.1	1.57338e-10
MA0107.1	MA0107.1	0.955
MA0108.2	MA0108.2	0.107
MA0111.1	MA0111.1	0.755
MA0112.2	MA0112.2	0.124
MA0113.1	MA0113.1	0.88
MA0114.1	MA0114.1	0.263
MA0115.1	MA0115.1	0.674
MA0116.1	MA0116.1	0.674
MA0117.1	MA0117.1	0.487
MA0119.1	MA0119.1	0.043
MA0122.1	MA0122.1	0.991
MA0124.1	MA0124.1	0.886
MA0125.1	MA0125.1	0.0143
MA0131.1	MA0131.1	0.393
MA0135.1	MA0135.1	0.262
MA0136.1	MA0136.1	0.0293
MA0137.2	MA0137.2	0.0384
MA0138.2	MA0138.2	0.208
MA0139.1	MA0139.1	0.383
MA0140.1	MA0140.1	0.658
MA0141.1	MA0141.1	0.401
MA0142.1	MA0142.1	0.347
MA0143.1	MA0143.1	0.171
MA0144.1	MA0144.1	0.78
MA0145.1	MA0145.1	0.0286
MA0146.1	MA0146.1	0.559
MA0147.1	MA0147.1	0.0464
MA0148.1	MA0148.1	0.0806
MA0149.1	MA0149.1	0.0403
MA0150.1	MA0150.1	0.416
MA0152.1	MA0152.1	0.263
MA0153.1	MA0153.1	0.63
MA0154.1	MA0154.1	0.135
MA0155.1	MA0155.1	0.681
MA0156.1	MA0156.1	0.131
MA0157.1	MA0157.1	0.451
MA0159.1	MA0159.1	0.595
MA0160.1	MA0160.1	0.698
MA0162.1	MA0162.1	0.168
MA0163.1	MA0163.1	0.842
MA0164.1	MA0164.1	0.978
MA0258.1	MA0258.1	0.811
MA0259.1	MA0259.1	0.104

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10843

Novel motif	Logo	P-value
1	1	0.859
10	10	0.382
100	100	0.563
101	101	0.481
102	102	0.382
103	103	0.0634
104	104	0.721
105	105	0.46
106	106	0.0323
107	107	0.00757
108	108	0.176
109	109	0.0662
11	11	0.471
110	110	0.464
111	111	0.0255
112	112	0.592
113	113	0.0146
114	114	0.135
115	115	0.341
116	116	0.756
117	117	0.506
118	118	0.592
119	119	0.107
12	12	0.405
120	120	0.00942
121	121	0.587
122	122	0.971
123	123	0.64
124	124	0.131
125	125	0.334
126	126	0.47
127	127	0.168
128	128	0.0839
129	129	0.0621
13	13	0.672
130	130	0.247
131	131	0.715
132	132	0.168
133	133	0.0548
134	134	0.112
135	135	0.559
136	136	0.64
137	137	0.265
138	138	0.818
139	139	0.951
14	14	0.828
140	140	0.419
141	141	0.714
142	142	0.638
143	143	0.978
144	144	0.646
145	145	0.0972
146	146	0.122
147	147	0.265
148	148	0.139
149	149	0.555
15	15	0.6
150	150	0.129
151	151	0.276
152	152	0.0126
153	153	0.818
154	154	0.646
155	155	0.613
156	156	0.589
157	157	0.721
158	158	0.663
159	159	0.894
16	16	0.179
160	160	0.702
161	161	0.976
162	162	0.894
163	163	0.717
164	164	0.764
165	165	0.662
166	166	0.688
167	167	0.223
168	168	0.146
169	169	0.0976
17	17	0.0636
18	18	0.31
19	19	0.881
2	2	0.223
20	20	0.792
21	21	0.552
22	22	0.545
23	23	0.0131
24	24	0.0809
25	25	0.68
26	26	0.545
27	27	0.529
28	28	0.389
29	29	0.456
3	3	0.252
30	30	0.154
31	31	0.476
32	32	0.239
33	33	0.399
34	34	0.901
35	35	0.175
36	36	0.854
37	37	0.495
38	38	0.218
39	39	0.264
4	4	0.74
40	40	0.124
41	41	0.871
42	42	0.46
43	43	0.37
44	44	0.26
45	45	0.0948
46	46	0.511
47	47	0.594
48	48	0.26
49	49	0.587
5	5	0.641
50	50	0.332
51	51	0.429
52	52	0.184
53	53	0.657
54	54	0.419
55	55	0.321
56	56	0.219
57	57	0.521
58	58	0.823
59	59	0.249
6	6	0.229
60	60	0.255
61	61	0.953
62	62	0.981
63	63	0.124
64	64	0.937
65	65	0.212
66	66	0.504
67	67	0.513
68	68	0.265
69	69	0.26
7	7	0.71
70	70	0.00937
71	71	0.582
72	72	0.896
73	73	0.0202
74	74	0.171
75	75	0.181
76	76	0.671
77	77	0.046
78	78	0.0291
79	79	0.874
8	8	0.543
80	80	0.781
81	81	0.91
82	82	0.604
83	83	0.657
84	84	0.562
85	85	0.33
86	86	0.475
87	87	0.73
88	88	0.578
89	89	0.0306
9	9	0.846
90	90	0.683
91	91	0.472
92	92	0.228
93	93	0.958
94	94	0.522
95	95	0.336
96	96	0.956
97	97	0.921
98	98	0.826
99	99	0.286

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10843

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000191 human urothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005200
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005200
+|accession_numbers=CAGE;DRX008528;DRR009400;DRZ000825;DRZ002210;DRZ012175;DRZ013560
+|accession_numbers_RNASeq=sRNA-Seq;DRX037135;DRR041501;DRZ007143
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.51!356.07!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.07!116.47!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.04!108.89!EHF;;chr3:189507432..189507459,+!p1@TP63!1.99!96.48!TP63;;chr3:111314186..111314204,-!p1@ZBED2!1.88!74.89!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.87!72.36!HES2;;chr12:66218255..66218304,+!p3@HMGA2!1.63!109.12!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.61!45.03!BNC1;;chr2:176969228..176969260,+!p1@HOXD11!1.61!39.28!HOXD11;;chr12:54785074..54785122,-!p2@ZNF385A!1.56!53.30!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.48!33.08!ZNF385A;;chr6:34524025..34524045,-!p3@SPDEF!1.47!28.72!SPDEF;;chr12:66218598..66218645,+!p2@HMGA2!1.44!118.77!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!1.36!22.05!SOX15;;chr19:45908292..45908374,-!p1@PPP1R13L!1.35!185.39!PPP1R13L;;chr6:10415276..10415341,-!p2@TFAP2A!1.34!25.27!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.77!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.31!40.20!SOX15;;chr6:34524049..34524089,-!p2@SPDEF!1.29!18.38!SPDEF;;chr12:66218836..66218888,+!p1@HMGA2!1.27!159.20!HMGA2;;chr2:176969179..176969226,+!p2@HOXD11!1.25!16.77!HOXD11;;chr6:1312325..1312340,+!p1@FOXQ1!1.23!26.19!FOXQ1;;chr12:66218378..66218401,+!p6@HMGA2!1.20!22.74!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!1.19!40.43!EPAS1;;chr12:66218212..66218244,+!p5@HMGA2!1.19!20.90!HMGA2;;chr6:34524093..34524135,-!p1@SPDEF!1.19!14.47!SPDEF;;chr7:27205106..27205134,-!p2@HOXA9!1.18!14.24!HOXA9;;chr3:111314230..111314241,-!p2@ZBED2!1.16!13.32!ZBED2;;chr8:49833948..49833973,-!p2@SNAI2!1.15!83.16!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.14!263.72!SNAI2;;chr12:66218183..66218209,+!p4@HMGA2!1.14!24.35!HMGA2;;chr8:102504651..102504683,+!p1@GRHL2!1.14!12.86!GRHL2;;chr11:34645791..34645836,+!p3@EHF!1.13!12.41!EHF;;chr3:12330560..12330579,+!p1@PPARG!1.10!13.32!PPARG;;chr1:209979375..209979386,-!p4@IRF6!1.10!11.72!IRF6;;chr1:209979449..209979460,-!p3@IRF6!1.10!11.72!IRF6;;chr12:66218443..66218461,+!p8@HMGA2!1.08!14.24!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!1.08!13.55!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!1.08!11.03!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.05!10.34!SOX7;;chr17:70117153..70117174,+!p1@SOX9!1.03!102.23!SOX9;;chr12:66218469..66218477,+!p16@HMGA2!1.01!9.19!HMGA2;;chr22:19748231..19748317,+!p1@TBX1!1.00!8.96!TBX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.99!8.73!TFAP2A;;chr17:80797886..80797906,-!p1@ZNF750!0.98!8.50!ZNF750;;chr4:57547454..57547469,-!p1@HOPX!0.96!8.04!HOPX;;chr11:34642656..34642667,+!p2@EHF!0.96!8.04!EHF;;chr14:38064429..38064486,-!p1@FOXA1!0.96!8.04!FOXA1;;chr3:189507460..189507471,+!p3@TP63!0.95!7.81!TP63;;chr3:170076314..170076334,+!p2@SKIL!0.93!9.88!SKIL;;chr2:176994408..176994492,+!p1@HOXD8!0.92!7.35!HOXD8;;chr13:73633131..73633149,+!p1@KLF5!0.90!77.19!KLF5;;chr7:27205136..27205164,-!p1@HOXA9!0.90!6.89!HOXA9;;chr19:42636586..42636607,-!p1@POU2F2!0.89!19.53!POU2F2;;chr6:21597765..21597779,+!p2@SOX4!0.88!56.28!SOX4;;chr16:79634624..79634642,-!p1@MAF!0.88!26.88!MAF;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.43!FOXL1;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.43!HMGA2;;chr19:53496768..53496799,-!p1@ZNF702P!0.86!9.88!ZNF702P;;chr10:8096631..8096660,+!p1@GATA3!0.86!7.58!GATA3;;chr10:8096772..8096787,+!p2@GATA3!0.85!7.35!GATA3;;chr2:208030647..208030689,-!p1@KLF7!0.84!53.30!KLF7;;chr19:20278012..20278034,+!p1@ZNF486!0.82!51.00!ZNF486;;chr12:27485762..27485776,+!p3@ARNTL2!0.81!15.62!ARNTL2;;chr12:66357214..66357233,+!p13@HMGA2!0.80!5.28!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.28!HOXB6;;chr1:37940170..37940190,+!p1@ZC3H12A!0.79!68.92!ZC3H12A;;chr1:151032860..151032918,+!p1@MLLT11!0.79!67.08!MLLT11;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.53!IFI16;;chr1:151032782..151032801,+!p4@MLLT11!0.78!10.57!MLLT11;;chr6:106546808..106546833,+!p3@PRDM1!0.78!6.43!PRDM1;;chr12:115121962..115121987,-!p1@TBX3!0.77!45.26!TBX3;;chr12:96588219..96588263,+!p2@ELK3!0.77!38.82!ELK3;;chr1:151032739..151032748,+!p6@MLLT11!0.77!6.20!MLLT11;;chr2:60778035..60778060,-!p4@BCL11A!0.77!5.97!BCL11A;;chr6:10415484..10415508,-!p3@TFAP2A!0.77!4.82!TFAP2A;;chr15:67458861..67458879,+!p17@SMAD3!0.77!4.82!SMAD3;;chr19:20278043..20278054,+!p2@ZNF486!0.77!4.82!ZNF486;;chr5:137804484..137804498,+!p2@EGR1!0.76!20.68!EGR1;;chr12:27485823..27485868,+!p2@ARNTL2!0.75!20.68!ARNTL2;;chrX:85403445..85403479,+!p2@DACH2!0.75!4.59!DACH2;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.73!HIF1A;;chr17:38465441..38465481,+!p6@RARA!0.74!5.74!RARA;;chr2:43453734..43453751,-!p1@ZFP36L2!0.71!499.88!ZFP36L2;;chr14:69259772..69259790,-!p1@ZFP36L1!0.71!476.22!ZFP36L1;;chr11:128392273..128392308,-!p2@ETS1!0.71!19.53!ETS1;;chr16:86600426..86600441,+!p1@FOXC2!0.71!11.26!FOXC2;;chr17:46806067..46806097,-!p1@HOXB13!0.71!4.14!HOXB13;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.14!HMGA2;;chr7:96654026..96654061,-!p2@DLX5!0.71!4.14!DLX5;;chr3:5021268..5021282,+!p4@BHLHE40!0.70!8.96!BHLHE40;;chr12:66218152..66218174,+!p10@HMGA2!0.70!4.36!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!0.69!18.61!ETV4;;chr17:36105074..36105086,-!p2@HNF1B!0.69!3.91!HNF1B;;chr18:42260840..42260860,+!p2@SETBP1!0.69!3.91!SETBP1;;chr12:96588143..96588185,+!p1@ELK3!0.67!51.46!ELK3;;chr2:46524878..46524891,+!p3@EPAS1!0.67!6.89!EPAS1;;chr2:214015343..214015366,-!p3@IKZF2!0.67!3.68!IKZF2;;chr15:83953373..83953386,-!p2@BNC1!0.67!3.68!BNC1;;chr17:45928443..45928473,-!p2@SP6!0.67!3.68!SP6;;chr3:5021113..5021180,+!p1@BHLHE40!0.66!289.91!BHLHE40;;chr16:79633894..79633954,-!p3@MAF!0.66!7.58!MAF;;chr7:27135591..27135658,-!p1@HOXA1!0.66!7.58!HOXA1;;chr21:36260295..36260310,-!p3@RUNX1!0.66!6.20!RUNX1;;chr20:50721803..50721857,-!p2@ZFP64!0.66!5.97!ZFP64;;chr14:62162258..62162269,+!p2@HIF1A!0.65!39.05!HIF1A;;chr20:18038521..18038571,-!p1@OVOL2!0.65!3.45!OVOL2;;chr5:2751762..2751784,-!p1@IRX2!0.65!3.45!IRX2;;chr8:102504690..102504704,+!p3@GRHL2!0.65!3.45!GRHL2;;chr8:102504979..102505010,+!p2@GRHL2!0.65!3.45!GRHL2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.65!3.45!TFCP2L1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.01!E2F7;;chr12:66218573..66218596,+!p7@HMGA2!0.63!5.28!HMGA2;;chr2:10091815..10091864,+!p1@GRHL1!0.63!4.59!GRHL1;;chr1:10754477..10754517,-!p1@CASZ1!0.62!5.74!CASZ1;;chr17:38465413..38465438,+!p5@RARA!0.62!5.51!RARA;;chr10:8095593..8095625,+!p3@GATA3!0.62!3.91!GATA3;;chr15:83953694..83953708,-!p4@BNC1!0.62!3.22!BNC1;;chr7:63505799..63505904,+!p1@ZNF727!0.62!3.22!ZNF727;;chr2:45236540..45236577,-!p1@SIX2!0.62!3.22!SIX2;;chr19:9811347..9811351,-!p1@ZNF812!0.62!3.22!ZNF812;;chr1:40367668..40367684,-!p2@MYCL1!0.62!3.22!MYCL1;;chr3:193853927..193853944,+!p1@HES1!0.61!119.92!HES1;;chr11:65667884..65667895,-!p2@FOSL1!0.60!13.55!FOSL1;;chr12:115122005..115122016,-!p3@TBX3!0.60!3.68!TBX3;;chr2:176969124..176969155,+!p5@HOXD11!0.60!2.99!HOXD11;;chr3:69915385..69915438,+!p3@MITF!0.60!2.99!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.60!2.99!HOXA11;;chr17:46806035..46806059,-!p2@HOXB13!0.60!2.99!HOXB13;;chr1:10856694..10856715,-!p3@CASZ1!0.60!2.99!CASZ1;;chr12:125002861..125002894,-!p7@NCOR2!0.59!4.59!NCOR2;;chr3:170075436..170075520,+!p1@SKIL!0.57!72.82!SKIL;;chr2:60780607..60780624,-!p2@BCL11A!0.57!9.88!BCL11A;;chr19:53636125..53636178,-!p1@ZNF415!0.57!8.96!ZNF415;;chr12:80084279..80084293,-!p8@PAWR!0.57!5.05!PAWR;;chr5:134369905..134369972,-!p1@PITX1!0.57!4.59!PITX1;;chr6:10419768..10419819,-!p6@TFAP2A!0.57!2.76!TFAP2A;;chr11:47236584..47236679,+!p1@DDB2!0.56!36.07!DDB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.56!33.77!ZBTB38;;chr7:26191809..26191890,+!p1@NFE2L3!0.56!16.08!NFE2L3;;chr3:5021191..5021202,+!p3@BHLHE40!0.56!8.27!BHLHE40;;chr7:6655225..6655279,+!p1@ENST00000457543!0.56!4.36!ZNF853;;chr3:5021026..5021035,+!p5@BHLHE40!0.56!3.45!BHLHE40;;chr3:169381420..169381535,-!p1@MECOM!0.56!3.22!MECOM;;chr1:59249707..59249727,-!p1@JUN!0.55!137.14!JUN;;chr6:21593973..21593988,+!p1@SOX4!0.55!117.62!SOX4;;chr12:80084303..80084332,-!p1@PAWR!0.55!18.61!PAWR;;chr2:177053386..177053402,+!p1@HOXD1!0.55!2.53!HOXD1;;chr3:189507523..189507535,+!p5@TP63!0.55!2.53!TP63;;chr19:45908286..45908291,-!p3@PPP1R13L!0.55!2.53!PPP1R13L;;chr15:101069113..101069169,-!p1@CERS3!0.55!2.53!CERS3;;chr15:67458836..67458859,+!p22@SMAD3!0.55!2.53!SMAD3;;chr13:41635067..41635100,-!p5@ELF1!0.54!5.28!ELF1;;chr19:17356189..17356221,-!p2@NR2F6!0.54!4.59!NR2F6;;chr21:36260343..36260402,-!p6@RUNX1!0.54!4.36!RUNX1;;chr19:53496806..53496848,-!p2@ZNF702P!0.54!4.14!ZNF702P;;chr12:96588279..96588299,+!p4@ELK3!0.53!14.24!ELK3;;chr16:79634595..79634620,-!p2@MAF!0.53!5.05!MAF;;chr2:214015111..214015179,-!p1@IKZF2!0.53!4.82!IKZF2;;chr5:137801160..137801176,+!p1@EGR1!0.52!302.32!EGR1;;chr19:52873166..52873208,+!p1@ZNF880!0.52!41.35!ZNF880;;chr14:21566731..21566836,-!p1@ZNF219!0.52!32.16!ZNF219;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.52!11.95!ZNF816;;chr1:10856639..10856662,-!p2@CASZ1!0.52!2.30!CASZ1;;chr16:86600870..86600921,+!p2@FOXC2!0.52!2.30!FOXC2;;chr18:42260920..42260951,+!p4@SETBP1!0.52!2.30!SETBP1;;chr12:66358080..66358094,+!p15@HMGA2!0.52!2.30!HMGA2;;chr9:22447422..22447483,+!p1@DMRTA1!0.52!2.30!DMRTA1;;chr19:9731872..9731915,-!p1@ZNF561!0.51!37.90!ZNF561;;chr22:38598086..38598105,+!p1@MAFF!0.51!30.78!MAFF;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.51!7.81!ZNF525;;chr19:52674853..52674892,-!p2@ZNF836!0.51!7.35!ZNF836;;chr8:128748308..128748324,+!p2@MYC!0.50!79.94!MYC;;chr19:53360870..53360873,-!p1@ZNF468!0.50!10.11!ZNF468;;chr6:15246200..15246214,+!p2@JARID2!0.50!7.35!JARID2;;chr7:137563945..137564001,-!p6@CREB3L2!0.50!6.20!CREB3L2;;chr17:41622765..41622821,-!p2@ETV4!0.50!3.68!ETV4;;chr19:56988864..56988924,-!p2@ZNF667!0.50!2.99!ZNF667;;chr15:67418119..67418162,+!p5@SMAD3!0.50!2.53!SMAD3;;chr1:59249732..59249749,-!p2@JUN!0.49!33.31!JUN;;chr19:9609272..9609297,-!p1@ZNF560!0.49!2.07!ZNF560;;chr1:151804244..151804310,-!p1@RORC!0.49!2.07!RORC;;chr20:50722202..50722217,-!p7@ZFP64!0.49!2.07!ZFP64;;chrX:57619083..57619113,+!p1@ZXDB!0.49!2.07!ZXDB;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.07!MSX2;;chr6:106546786..106546802,+!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000731;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520cells%252c%2520donor0.CNhs10843.11216-116B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11216-116B1
 |is_a=EFO:0002091;;FF:0000191
 |is_obsolete=
+|library_id=CNhs10843
+|library_id_phase_based=2:CNhs10843
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11216
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GGCTAC.11216
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11216
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GGCTAC.11216
 |name=Urothelial cells, donor0
 |namespace=FANTOM5
@@ Line 45: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10843,LSID700,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10009,,,
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@@ Line 61: / Line 81: @@
 |rna_tube_id=116B1
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+|rnaseq_library_id=SRhi10009.GGCTAC
 |sample_age=
 |sample_category=primary cells
@@ Line 84: / Line 105: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11216-116B1;search_select_hide=table117:FF:11216-116B1
 }}

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Latest revision as of 16:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0