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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005427
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005427
|accession_numbers=CAGE;DRX008361;DRR009233;DRZ000658;DRZ002043;DRZ012008;DRZ013393
|accession_numbers_RNASeq=sRNA-Seq;DRX037207;DRR041573;DRZ007215
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002195,CL:0002571
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002195,CL:0002571
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.30!200.09!HAND2;;chr16:86544113..86544145,+!p1@FOXF1!1.95!109.11!FOXF1;;chr6:134210243..134210257,+!p1@TCF21!1.84!68.59!TCF21;;chr9:77112244..77112262,+!p1@RORB!1.71!55.44!RORB;;chr8:11561684..11561751,+!p1@GATA4!1.58!36.96!GATA4;;chr5:92918919..92918942,+!p1@NR2F1!1.57!154.60!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.54!36.96!NR2F1;;chr4:174451350..174451363,-!p3@HAND2!1.51!31.63!HAND2;;chr5:92919100..92919135,+!p3@NR2F1!1.45!32.70!NR2F1;;chr19:46801639..46801699,+!p1@HIF3A!1.41!24.88!HIF3A;;chr11:61520075..61520136,+!p1@C11orf9!1.35!44.78!C11orf9;;chr11:46299199..46299233,+!p1@CREB3L1!1.33!101.64!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.55!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.22!25.94!TCF12;;chr5:92919375..92919438,+!p6@NR2F1!1.19!15.64!NR2F1;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.90!ZBTB16;;chr7:35293685..35293718,-!p1@TBX20!1.17!13.86!TBX20;;chr14:62162285..62162296,+!p3@HIF1A!1.14!66.81!HIF1A;;chr17:1959369..1959388,+!p2@HIC1!1.14!33.76!HIC1;;chr19:45971246..45971265,+!p1@FOSB!1.13!230.29!FOSB;;chr17:59477233..59477263,+!p1@TBX2!1.09!35.18!TBX2;;chr3:126076242..126076257,-!p1@KLF15!1.06!13.15!KLF15;;chr9:73028814..73028895,-!p1@KLF9!1.04!98.80!KLF9;;chr18:19749386..19749404,+!p2@GATA6!1.03!13.86!GATA6;;chr14:62162258..62162269,+!p2@HIF1A!1.01!90.98!HIF1A;;chr12:100867653..100867677,+!p2@NR1H4!1.01!9.24!NR1H4;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.31!NR2F1;;chr12:100867627..100867652,+!p1@NR1H4!0.96!8.17!NR1H4;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!219.63!TSC22D3;;chr12:100867777..100867788,+!p5@NR1H4!0.95!7.82!NR1H4;;chr14:75745523..75745537,+!p1@FOS!0.93!934.33!FOS;;chr9:73029219..73029289,-!p2@KLF9!0.92!23.10!KLF9;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.53!BNC1;;chr1:59249688..59249703,-!p3@JUN!0.91!44.42!JUN;;chr12:100867736..100867750,+!p4@NR1H4!0.91!7.11!NR1H4;;chr5:92919312..92919334,+!p13@NR2F1!0.89!6.75!NR2F1;;chr17:59477197..59477212,+!p2@TBX2!0.88!11.73!TBX2;;chr8:48650715..48650735,-!p1@CEBPD!0.87!858.63!CEBPD;;chr5:137804484..137804498,+!p2@EGR1!0.86!26.65!EGR1;;chr2:66662249..66662267,+!p2@MEIS1!0.86!25.23!MEIS1;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.35!TWIST1;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.95!PITX1;;chr17:46655704..46655718,-!p2@HOXB4!0.86!9.60!HOXB4;;chr17:59477275..59477286,+!p3@TBX2!0.86!8.53!TBX2;;chr2:66662281..66662308,+!p1@MEIS1!0.85!22.39!MEIS1;;chr5:92918894..92918912,+!p2@NR2F1!0.85!20.97!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.85!19.90!GATA6;;chr17:46132044..46132080,+!p4@NFE2L1!0.85!6.04!NFE2L1;;chr12:52445218..52445237,+!p1@NR4A1!0.84!79.61!NR4A1;;chr13:37494365..37494381,-!p1@SMAD9!0.84!10.66!SMAD9;;chr16:8962202..8962222,-!p3@CARHSP1!0.83!10.66!CARHSP1;;chr5:92919452..92919496,+!p11@NR2F1!0.83!5.69!NR2F1;;chr6:1389789..1389821,+!p1@FOXF2!0.82!7.82!FOXF2;;chr3:126076264..126076305,-!p2@KLF15!0.81!7.82!KLF15;;chr20:48599506..48599526,+!p1@SNAI1!0.80!36.61!SNAI1;;chr5:137801160..137801176,+!p1@EGR1!0.78!549.44!EGR1;;chr7:19157248..19157268,-!p1@TWIST1!0.78!14.93!TWIST1;;chr2:66662895..66662907,+!p3@MEIS1!0.78!6.40!MEIS1;;chr11:16627528..16627550,-!p7@SOX6!0.78!4.98!SOX6;;chr8:106330656..106330684,+!p1@ZFPM2!0.74!12.79!ZFPM2;;chr17:46621937..46621966,-!p2@HOXB2!0.73!12.79!HOXB2;;chr17:46655730..46655791,-!p1@HOXB4!0.73!11.73!HOXB4;;chr3:69915385..69915438,+!p3@MITF!0.72!4.26!MITF;;chr1:40105299..40105326,-!p1@HEYL!0.72!4.26!HEYL;;chr5:92919194..92919204,+!p16@NR2F1!0.72!4.26!NR2F1;;chr10:63809106..63809127,+!p1@ARID5B!0.71!63.26!ARID5B;;chr15:96873984..96873999,+!p3@NR2F2!0.71!34.12!NR2F2;;chr1:164528616..164528660,+!p5@PBX1!0.71!9.24!PBX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.71!7.46!CREB3L1;;chr7:149470540..149470596,-!p2@ZNF467!0.71!5.69!ZNF467;;chr5:92920456..92920488,+!p9@NR2F1!0.71!4.98!NR2F1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.40!ZBTB38;;chr14:62162224..62162254,+!p1@HIF1A!0.69!645.39!HIF1A;;chr17:1958388..1958404,+!p1@HIC1!0.69!28.08!HIC1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.46!ZFP106;;chr7:35293665..35293680,-!p2@TBX20!0.69!3.91!TBX20;;chr9:73028786..73028797,-!p11@KLF9!0.69!3.91!KLF9;;chr14:74256787..74256858,-!p6@C14orf43!0.69!3.91!C14orf43;;chr10:63853436..63853442,+!p4@ARID5B!0.68!23.10!ARID5B;;chr7:149470641..149470694,-!p1@ZNF467!0.68!19.19!ZNF467;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.41!STAT6;;chr2:185463247..185463263,+!p1@ZNF804A!0.67!7.11!ZNF804A;;chr14:24837368..24837401,+!p1@NFATC4!0.66!9.24!NFATC4;;chr2:121493492..121493537,+!p2@GLI2!0.66!6.40!GLI2;;chr9:73028638..73028650,-!p7@KLF9!0.66!6.04!KLF9;;chr1:164528911..164528940,+!p7@PBX1!0.66!5.69!PBX1;;chr19:46800289..46800327,+!p2@HIF3A!0.66!3.55!HIF3A;;chr7:1577899..1577943,+!p3@MAFK!0.66!3.55!MAFK;;chr11:113930401..113930422,+!p3@ZBTB16!0.66!3.55!ZBTB16;;chr20:42543441..42543497,+!p1@TOX2!0.65!18.12!TOX2;;chr19:31840130..31840160,-!p2@TSHZ3!0.65!5.69!TSHZ3;;chr20:2673383..2673441,+!p1@EBF4!0.64!5.69!EBF4;;chr15:96874012..96874042,+!p2@NR2F2!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002571;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=CL:0000134
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|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520hepatic%252c%2520donor0.CNhs10845.11218-116B3.hg38.nobarcode.ctss.bed.gz
|id=FF:11218-116B3
|id=FF:11218-116B3
|is_a=EFO:0002091;;FF:0000098
|is_a=EFO:0002091;;FF:0000098
|is_obsolete=
|is_obsolete=
|library_id=CNhs10845
|library_id_phase_based=2:CNhs10845
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11218
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GCCAAT.11218
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11218
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GCCAAT.11218
|name=Mesenchymal stem cells - hepatic, donor0
|name=Mesenchymal stem cells - hepatic, donor0
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
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|profile_hcage=CNhs10845,LSID700,release009,COMPLETED
|profile_hcage=CNhs10845,LSID700,release009,COMPLETED
|profile_rnaseq=,,,
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|sample_cell_line=
Line 83: Line 106:
|top_motifs=TAL1_TCF{3,4,12}:1.95658673499;NKX3-1:1.87958652486;GLI1..3:1.62740616812;HSF1,2:1.59535152659;CRX:1.48725144478;TFAP4:1.48627660264;MYBL2:1.47920360068;TEF:1.47630547773;HIF1A:1.42521570733;MAFB:1.3014409649;TLX1..3_NFIC{dimer}:1.26875070174;SRF:1.20315253485;ZNF423:1.15665580652;ZNF238:1.118903115;EBF1:1.08337682418;NR3C1:1.04422480137;HAND1,2:1.03025777376;NKX2-2,8:0.980317428076;LHX3,4:0.957677583411;PAX4:0.947644740224;HOX{A5,B5}:0.904414227903;TEAD1:0.883688866807;PAX5:0.864456690297;EN1,2:0.815753467915;GTF2A1,2:0.813196691086;PATZ1:0.780687974679;HMGA1,2:0.767753679078;DBP:0.750413904447;ESR1:0.750212931285;FOX{I1,J2}:0.740658236376;RXRA_VDR{dimer}:0.736262824499;AIRE:0.730902068803;MAZ:0.719687648527;NKX2-1,4:0.673412934728;PAX6:0.672438936159;ATF6:0.665850121265;ZIC1..3:0.660834994781;NANOG:0.625151776423;TOPORS:0.623560087481;GZF1:0.605070217572;NFATC1..3:0.577625147507;FOXL1:0.576861093091;NR6A1:0.551766697763;UFEwm:0.516945837846;SOX5:0.516162363156;EVI1:0.514884441406;GTF2I:0.510471453779;ZNF384:0.504877041377;FOXA2:0.504206529404;HOX{A4,D4}:0.500498995738;AHR_ARNT_ARNT2:0.497992536613;ARID5B:0.492125877528;GFI1B:0.4835783761;IKZF1:0.473780984843;NFE2L2:0.470014833731;RORA:0.447435483066;ALX4:0.439741514692;FOX{D1,D2}:0.422269387734;AR:0.412903890546;NKX6-1,2:0.406497818829;TBP:0.396313336283;CDC5L:0.363366317356;TBX4,5:0.361632580607;NR5A1,2:0.349460617567;SMAD1..7,9:0.344615146437;RXR{A,B,G}:0.325239413834;HES1:0.323355136894;HLF:0.308712255183;SOX17:0.299109582446;NFIX:0.298113236156;MTE{core}:0.293258071327;FOXD3:0.27207520814;STAT5{A,B}:0.262588612806;HNF1A:0.262278442583;TFCP2:0.247791841909;ATF2:0.212644785018;NFE2L1:0.206133454908;FOX{F1,F2,J1}:0.194499738634;KLF4:0.190043737648;PAX8:0.178735259302;MEF2{A,B,C,D}:0.174566440202;HNF4A_NR2F1,2:0.174467995685;BPTF:0.159687336704;POU6F1:0.149197622317;TP53:0.144666380696;MYFfamily:0.144365446206;PAX3,7:0.141910720818;YY1:0.139537388176;SP1:0.133613410521;XBP1:0.125854795435;RBPJ:0.110512281345;bHLH_family:0.0691105288928;LEF1_TCF7_TCF7L1,2:0.0624693335884;CEBPA,B_DDIT3:0.0477131518704;PRRX1,2:0.0311865265136;HOXA9_MEIS1:0.0203105897946;FOXN1:0.00337273961863;CDX1,2,4:-0.000987639572994;JUN:-0.00512556539167;PAX1,9:-0.00834411382783;MZF1:-0.0196724007363;ZNF148:-0.0325128425734;NFE2:-0.0391717742254;ZBTB6:-0.0657761563217;NANOG{mouse}:-0.0687375604614;NFIL3:-0.0761425776457;XCPE1{core}:-0.0834408606532;FOXO1,3,4:-0.0905193456628;FOXM1:-0.0944223573986;GCM1,2:-0.0975855054024;NFY{A,B,C}:-0.111134798886;PRDM1:-0.11263146745;HIC1:-0.113618968857;STAT2,4,6:-0.122187487481;MYB:-0.132977791084;RFX1:-0.168504351356;FOSL2:-0.172298191355;ADNP_IRX_SIX_ZHX:-0.174414806539;GFI1:-0.185345910986;EGR1..3:-0.185833618832;REST:-0.191935616044;NFKB1_REL_RELA:-0.203408964714;FOS_FOS{B,L1}_JUN{B,D}:-0.204561393658;ELK1,4_GABP{A,B1}:-0.211229740303;GATA6:-0.213052369355;RUNX1..3:-0.214456012404;IRF1,2:-0.237331938603;ZNF143:-0.241462599126;RREB1:-0.24265259732;ZFP161:-0.246020472035;ESRRA:-0.25380999936;TFAP2B:-0.261451742183;NHLH1,2:-0.267930750075;FOXP3:-0.270403517513;TFAP2{A,C}:-0.274636239263;ATF5_CREB3:-0.278731695253;LMO2:-0.288789707284;PAX2:-0.292655708993;TGIF1:-0.296460524543;PBX1:-0.296569287412;PPARG:-0.31307742603;CREB1:-0.332751013754;NKX3-2:-0.338063554786;POU1F1:-0.34336156905;ATF4:-0.346548597516;BACH2:-0.347763555747;CUX2:-0.352727889271;MED-1{core}:-0.368584943639;FOXP1:-0.372330497798;ONECUT1,2:-0.389007899183;STAT1,3:-0.391891565131;NRF1:-0.423281518382;NR1H4:-0.426640189581;FOXQ1:-0.428137327896;POU5F1:-0.43828170125;ETS1,2:-0.465155721255;MTF1:-0.485115229623;GATA4:-0.487090914376;VSX1,2:-0.491894192913;SPIB:-0.496969669947;IRF7:-0.52004310077;TFDP1:-0.531980919656;SREBF1,2:-0.537575760673;HMX1:-0.544745882598;NKX2-3_NKX2-5:-0.554205643617;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.560915121347;ELF1,2,4:-0.592020574861;POU2F1..3:-0.601911793328;E2F1..5:-0.617739650981;HBP1_HMGB_SSRP1_UBTF:-0.622714437565;SNAI1..3:-0.626687191896;RFX2..5_RFXANK_RFXAP:-0.629169534236;SOX2:-0.62976041191;DMAP1_NCOR{1,2}_SMARC:-0.652304788828;ZEB1:-0.674207268904;EP300:-0.683421605267;SPI1:-0.701809291833;TLX2:-0.76902967996;ZBTB16:-0.785572120332;OCT4_SOX2{dimer}:-0.786294059807;SOX{8,9,10}:-0.792092837855;ALX1:-0.799574519655;BREu{core}:-0.810366458972;IKZF2:-0.825955748028;HOX{A6,A7,B6,B7}:-0.926400043713;SPZ1:-0.984917180615;PDX1:-0.99641735263;PITX1..3:-0.997284859419;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.997949090574;POU3F1..4:-1.04625596331;T:-1.20651329497;MYOD1:-1.39766096279
|top_motifs=TAL1_TCF{3,4,12}:1.95658673499;NKX3-1:1.87958652486;GLI1..3:1.62740616812;HSF1,2:1.59535152659;CRX:1.48725144478;TFAP4:1.48627660264;MYBL2:1.47920360068;TEF:1.47630547773;HIF1A:1.42521570733;MAFB:1.3014409649;TLX1..3_NFIC{dimer}:1.26875070174;SRF:1.20315253485;ZNF423:1.15665580652;ZNF238:1.118903115;EBF1:1.08337682418;NR3C1:1.04422480137;HAND1,2:1.03025777376;NKX2-2,8:0.980317428076;LHX3,4:0.957677583411;PAX4:0.947644740224;HOX{A5,B5}:0.904414227903;TEAD1:0.883688866807;PAX5:0.864456690297;EN1,2:0.815753467915;GTF2A1,2:0.813196691086;PATZ1:0.780687974679;HMGA1,2:0.767753679078;DBP:0.750413904447;ESR1:0.750212931285;FOX{I1,J2}:0.740658236376;RXRA_VDR{dimer}:0.736262824499;AIRE:0.730902068803;MAZ:0.719687648527;NKX2-1,4:0.673412934728;PAX6:0.672438936159;ATF6:0.665850121265;ZIC1..3:0.660834994781;NANOG:0.625151776423;TOPORS:0.623560087481;GZF1:0.605070217572;NFATC1..3:0.577625147507;FOXL1:0.576861093091;NR6A1:0.551766697763;UFEwm:0.516945837846;SOX5:0.516162363156;EVI1:0.514884441406;GTF2I:0.510471453779;ZNF384:0.504877041377;FOXA2:0.504206529404;HOX{A4,D4}:0.500498995738;AHR_ARNT_ARNT2:0.497992536613;ARID5B:0.492125877528;GFI1B:0.4835783761;IKZF1:0.473780984843;NFE2L2:0.470014833731;RORA:0.447435483066;ALX4:0.439741514692;FOX{D1,D2}:0.422269387734;AR:0.412903890546;NKX6-1,2:0.406497818829;TBP:0.396313336283;CDC5L:0.363366317356;TBX4,5:0.361632580607;NR5A1,2:0.349460617567;SMAD1..7,9:0.344615146437;RXR{A,B,G}:0.325239413834;HES1:0.323355136894;HLF:0.308712255183;SOX17:0.299109582446;NFIX:0.298113236156;MTE{core}:0.293258071327;FOXD3:0.27207520814;STAT5{A,B}:0.262588612806;HNF1A:0.262278442583;TFCP2:0.247791841909;ATF2:0.212644785018;NFE2L1:0.206133454908;FOX{F1,F2,J1}:0.194499738634;KLF4:0.190043737648;PAX8:0.178735259302;MEF2{A,B,C,D}:0.174566440202;HNF4A_NR2F1,2:0.174467995685;BPTF:0.159687336704;POU6F1:0.149197622317;TP53:0.144666380696;MYFfamily:0.144365446206;PAX3,7:0.141910720818;YY1:0.139537388176;SP1:0.133613410521;XBP1:0.125854795435;RBPJ:0.110512281345;bHLH_family:0.0691105288928;LEF1_TCF7_TCF7L1,2:0.0624693335884;CEBPA,B_DDIT3:0.0477131518704;PRRX1,2:0.0311865265136;HOXA9_MEIS1:0.0203105897946;FOXN1:0.00337273961863;CDX1,2,4:-0.000987639572994;JUN:-0.00512556539167;PAX1,9:-0.00834411382783;MZF1:-0.0196724007363;ZNF148:-0.0325128425734;NFE2:-0.0391717742254;ZBTB6:-0.0657761563217;NANOG{mouse}:-0.0687375604614;NFIL3:-0.0761425776457;XCPE1{core}:-0.0834408606532;FOXO1,3,4:-0.0905193456628;FOXM1:-0.0944223573986;GCM1,2:-0.0975855054024;NFY{A,B,C}:-0.111134798886;PRDM1:-0.11263146745;HIC1:-0.113618968857;STAT2,4,6:-0.122187487481;MYB:-0.132977791084;RFX1:-0.168504351356;FOSL2:-0.172298191355;ADNP_IRX_SIX_ZHX:-0.174414806539;GFI1:-0.185345910986;EGR1..3:-0.185833618832;REST:-0.191935616044;NFKB1_REL_RELA:-0.203408964714;FOS_FOS{B,L1}_JUN{B,D}:-0.204561393658;ELK1,4_GABP{A,B1}:-0.211229740303;GATA6:-0.213052369355;RUNX1..3:-0.214456012404;IRF1,2:-0.237331938603;ZNF143:-0.241462599126;RREB1:-0.24265259732;ZFP161:-0.246020472035;ESRRA:-0.25380999936;TFAP2B:-0.261451742183;NHLH1,2:-0.267930750075;FOXP3:-0.270403517513;TFAP2{A,C}:-0.274636239263;ATF5_CREB3:-0.278731695253;LMO2:-0.288789707284;PAX2:-0.292655708993;TGIF1:-0.296460524543;PBX1:-0.296569287412;PPARG:-0.31307742603;CREB1:-0.332751013754;NKX3-2:-0.338063554786;POU1F1:-0.34336156905;ATF4:-0.346548597516;BACH2:-0.347763555747;CUX2:-0.352727889271;MED-1{core}:-0.368584943639;FOXP1:-0.372330497798;ONECUT1,2:-0.389007899183;STAT1,3:-0.391891565131;NRF1:-0.423281518382;NR1H4:-0.426640189581;FOXQ1:-0.428137327896;POU5F1:-0.43828170125;ETS1,2:-0.465155721255;MTF1:-0.485115229623;GATA4:-0.487090914376;VSX1,2:-0.491894192913;SPIB:-0.496969669947;IRF7:-0.52004310077;TFDP1:-0.531980919656;SREBF1,2:-0.537575760673;HMX1:-0.544745882598;NKX2-3_NKX2-5:-0.554205643617;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.560915121347;ELF1,2,4:-0.592020574861;POU2F1..3:-0.601911793328;E2F1..5:-0.617739650981;HBP1_HMGB_SSRP1_UBTF:-0.622714437565;SNAI1..3:-0.626687191896;RFX2..5_RFXANK_RFXAP:-0.629169534236;SOX2:-0.62976041191;DMAP1_NCOR{1,2}_SMARC:-0.652304788828;ZEB1:-0.674207268904;EP300:-0.683421605267;SPI1:-0.701809291833;TLX2:-0.76902967996;ZBTB16:-0.785572120332;OCT4_SOX2{dimer}:-0.786294059807;SOX{8,9,10}:-0.792092837855;ALX1:-0.799574519655;BREu{core}:-0.810366458972;IKZF2:-0.825955748028;HOX{A6,A7,B6,B7}:-0.926400043713;SPZ1:-0.984917180615;PDX1:-0.99641735263;PITX1..3:-0.997284859419;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.997949090574;POU3F1..4:-1.04625596331;T:-1.20651329497;MYOD1:-1.39766096279
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11218-116B3;search_select_hide=table117:FF:11218-116B3
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:Mesenchymal stem cells - hepatic, donor0
Species:Human (Homo sapiens)
Library ID:CNhs10845
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number7525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005427
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10845 CAGE DRX008361 DRR009233
Accession ID Hg19

Library idBAMCTSS
CNhs10845 DRZ000658 DRZ002043
Accession ID Hg38

Library idBAMCTSS
CNhs10845 DRZ012008 DRZ013393
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005427
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.GCCAAT sRNA-Seq DRX037207 DRR041573
Accession ID Hg19

Library idBAMCTSS
SRhi10013.GCCAAT DRZ007215


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0729
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.128
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.132
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.132
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0988
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.286
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.467
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0728
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.132
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.259
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0407
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.111
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.444
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0167
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.281
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0675
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0243
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.721
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.543
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.585
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.623
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.233
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10845

Jaspar motifP-value
MA0002.20.0822
MA0003.10.386
MA0004.10.0271
MA0006.10.522
MA0007.10.0377
MA0009.10.885
MA0014.10.62
MA0017.10.609
MA0018.20.0195
MA0019.10.451
MA0024.16.55769e-4
MA0025.10.0546
MA0027.10.447
MA0028.10.0466
MA0029.10.594
MA0030.10.867
MA0031.10.384
MA0035.20.985
MA0038.10.631
MA0039.20.112
MA0040.10.0185
MA0041.10.399
MA0042.10.428
MA0043.10.536
MA0046.10.998
MA0047.20.784
MA0048.10.169
MA0050.10.00704
MA0051.10.013
MA0052.10.866
MA0055.10.65
MA0057.10.958
MA0058.10.0112
MA0059.10.327
MA0060.10.13
MA0061.10.579
MA0062.24.76448e-9
MA0065.20.541
MA0066.10.319
MA0067.10.124
MA0068.10.586
MA0069.10.512
MA0070.10.687
MA0071.10.1
MA0072.10.699
MA0073.10.25
MA0074.10.46
MA0076.13.6331e-4
MA0077.10.0787
MA0078.10.997
MA0079.20.343
MA0080.21.99492e-9
MA0081.17.25576e-4
MA0083.14.91094e-6
MA0084.10.383
MA0087.10.159
MA0088.10.443
MA0090.17.88476e-6
MA0091.10.00233
MA0092.10.00578
MA0093.10.0333
MA0099.20.00239
MA0100.10.907
MA0101.10.0761
MA0102.20.628
MA0103.10.00275
MA0104.20.0881
MA0105.10.733
MA0106.10.691
MA0107.10.116
MA0108.23.62628e-5
MA0111.10.731
MA0112.20.011
MA0113.10.00442
MA0114.10.676
MA0115.10.0846
MA0116.10.176
MA0117.10.978
MA0119.13.50897e-4
MA0122.10.714
MA0124.10.807
MA0125.10.901
MA0131.10.71
MA0135.10.00872
MA0136.11.93579e-9
MA0137.20.85
MA0138.20.565
MA0139.10.877
MA0140.10.445
MA0141.10.765
MA0142.10.0238
MA0143.10.45
MA0144.10.623
MA0145.10.0753
MA0146.10.0951
MA0147.10.117
MA0148.10.195
MA0149.10.735
MA0150.10.919
MA0152.10.0473
MA0153.10.395
MA0154.10.121
MA0155.10.109
MA0156.11.5143e-9
MA0157.10.516
MA0159.10.165
MA0160.10.892
MA0162.10.177
MA0163.10.0355
MA0164.10.747
MA0258.10.161
MA0259.10.926



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10845

Novel motifP-value
10.614
100.703
1000.175
1010.743
1020.13
1030.125
1040.372
1050.75
1060.309
1070.0933
1080.529
1090.644
110.524
1100.723
1110.514
1120.63
1130.582
1140.394
1150.296
1160.236
1170.8
1180.57
1190.604
120.464
1200.61
1210.264
1220.0546
1230.0322
1240.753
1250.103
1260.857
1270.907
1280.0711
1290.351
130.903
1300.00992
1310.121
1320.417
1330.73
1340.391
1350.625
1360.903
1370.272
1380.155
1390.127
140.512
1400.136
1410.495
1420.368
1430.692
1440.336
1450.719
1460.235
1470.431
1480.555
1490.00529
150.873
1500.561
1510.72
1520.0836
1530.8
1540.655
1550.25
1560.515
1570.121
1580.682
1590.899
160.0393
1600.0738
1610.792
1620.064
1630.069
1640.118
1650.79
1660.137
1670.278
1680.54
1690.0388
170.422
180.246
190.0327
20.246
200.859
210.299
220.0294
230.136
240.976
250.148
260.212
270.992
280.0754
290.274
30.45
300.705
310.148
321.68287e-17
330.889
340.537
350.368
360.521
370.262
380.997
390.125
40.485
400.588
410.0804
420.901
430.28
440.946
450.505
460.397
470.858
480.978
490.168
50.299
500.197
510.252
520.868
530.309
540.555
550.988
560.786
570.523
580.963
590.232
60.686
600.956
610.585
620.839
630.161
640.935
650.141
660.988
670.223
680.474
690.297
70.778
700.906
710.122
720.78
730.137
740.636
750.667
760.954
770.0107
780.502
790.275
80.11
800.61
810.831
820.93
830.0677
840.353
850.008
860.74
870.642
880.218
890.131
90.391
900.51
910.902
920.216
930.153
940.985
950.447
960.447
970.386
980.463
990.00828



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10845


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002195 (hepatic stem cell)
0002571 (hepatic mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000098 (human hepatic mesenchymal stem cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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