FF:11228-116C4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004835 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008215;DRR009087;DRZ000512;DRZ001897;DRZ011862;DRZ013247 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840,CL:0000784 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000044,FF:0000045 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520plasmacytoid%252c%2520donor1.CNhs10857.11228-116C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11228-116C4 | |id=FF:11228-116C4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000044;;FF:0000045 | ||
|is_obsolete= | |||
|library_id=CNhs10857 | |||
|library_id_phase_based=2:CNhs10857 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11228 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11228 | |||
|name=Dendritic Cells - plasmacytoid, donor1 | |name=Dendritic Cells - plasmacytoid, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10857,LSID702,release008,COMPLETED | |profile_hcage=CNhs10857,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.092892723212638,0,0,0,0,0,0.0740655716194148,0,0.259807298178319,-0.022747575020888,0,0,0,0,0,0,0,0,0,0.898518299841143,0,0,0,0.137593213616662,0,0,0,0.1171918008529,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0.16937498165142,0,0,0,0,0.323447914735708,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.0407437791410989,0,-0.0969923612426051,0,0.16937498165142,-0.00445090400045901,0,0.092892723212638,0,0,0,0,0,0,0.092892723212638,0,0.857378108946766,0,0,0.234383601705801,0,0,0,0.0563989686599092,0.046446361606319,0,0,0,0,0,-0.419961550160724,0,0,0,0.0342087479208432,0.140634850192312,0,0,0.046446361606319,0,0.287739557767127,-0.0537897099751855,0,0,0,0,0,0.145458111982544,0,0,0,0,0,0,0,0,0,0.16937498165142,0,-0.096373593922461,0,0,0,0.173371633664486,0.323052989406804,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.287739557767127,0,0,0.092892723212638,0,0,0,0,0,0,0,0,-0.247178875285564,0,0.304665615340451,0.090868459182329,0,0.234383601705801,-0.120867133414661,0,0.16937498165142,0,0,0.703664505776362,0,0.586799617330174,0.586799617330174,0,-0.128119866952565,0,0.042480171623323,0,0,0,0,0,-0.0710886291926064,0,-0.127811699543191,-0.0683442610773682,0,0,0,0,-0.0150880204268444,0,-0.120879483793741,0.380863032034239,0,-0.520341323317425,0.473834147085343,0,0,0,-0.265921247692823,-0.222721747346484,0,0,0.425762087390869,-0.0641578177077585,0,0,-0.391044581551635,0,0.201954013038746,-0.155975327169615,0,-0.0168213390612558,0,0,0.290916223965089,0,0,0,0,0,0,0,0,0.106144695637783,0.285835310310851,-0.0213941016300489,0,0,-0.0350523971604761,-0.0760016946163962,0,0,-0.373286155956567,-0.350736013296859,0.0372582704476426,-0.31137127365698,0,0.525223443977914,-0.00473886505177259,0.616151325024357,-0.240696796712261,-0.147401849371139,-0.0970889963372094,0,-0.371197782235585,-0.173448722124192,0.268809761081909,-0.12357815052051,-0.0127280028290641,-0.997024906581304,0.21952258726278,0,0,-0.0775089264793031,-0.33872453933796,0,0.0219554738891179,-0.149184398313233,0.119918532008947,-0.67098743647571,-0.351273181225945,-0.55122821730723,0.0777956375834774,-0.0395325284566706,-0.364543729683957,0,-0.276114212921155,-0.154223412155224,0,-0.00859368673798433,-0.0763894660237259,0.556257324742002,0.397058878119857,0,0.239710584873915,-0.0683442610773682,0.31868825601222,-0.487518520421772,0.148521050875416,0,-0.0223826377430286,0.16405169947216,0,0,0.00423032022760705,0,0,-0.0906379864633904,0.0978843689942723,0.230727638802112,0,0.0212426131802401,0,0.1646779476177,0,-0.0320156501334589,0.144906326507695,0,0.367981205258968,0,-0.191640622413023,0.0820899651443462,-0.0720979731263648,-0.422394805391737,0.0344458964008127,1.01471495509895,0.352074953526631,-0.117999610352378,-0.448009548626686,0,-0.0881268324752877,-0.107632623077519,-0.419961550160724,-0.215914931263868,0,-0.583529904229572,0,-0.336198348375702,0,0.0457204717723516,0,0.343799212654347,-0.154658842468406,0.432239595544005,-0.071345984062059,0,0.497579753757269,-0.695238214561336,0,-0.163706807157734,0,0,0.379179560531886,-0.697695966512583,-0.018762973362172,-0.0925430950728756,0,-0.790080158389657,0,0,-0.247296836362598,0.150298871240445,0,0.18624217812374,0.30220607182749,0.0563989686599092,-0.0230783502222961,0,0,-0.645700337992725,0,0,0.636013014059205,-0.10404736226088,0.822868089549975,0.694606610536696,-0.075630386882117,-0.108622809454255,0,0,0.286055434392481,0.529546643866525,0.0308404138789998,0,0,-0.203434934992505,-0.116628112990133,0,0.145458111982544,0,0,0,0,0,0,0,0,0,0.057142487150005,-0.0139030140529078,0,0.343921839485837,0,0,0,0,0,0,0,0,-1.20655592981484,-0.220713861677505,-0.0301246924637823,0,0,0.131133852432029,0,-0.122830679340837,0.223182685804746,0.16937498165142,0.294556541401838,0,0,0,0,0.148242611916589,0,0.290916223965089,0.046446361606319,0,0.0351622661589739,0.190948679396884,0.16937498165142,0,0,-0.107579419950371,0,0,0,0,0.110953618271389,0,0,-0.46255519173496,0,-0.264978514868373,0.0877931021045783,0,0.061721753628716,-0.206033429646188,-1.21672761743582,0,0,0.0295690921752019,0,0,0.0061035045911908,0,0,-0.00091381080448117,0,0,0.1171918008529,0,0,0.092892723212638,-0.214314512399756,0.131133852432029,0,0,0,0,0,0,0,0,0,0,0.0147231561098062,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.116241681885257,0,0,0,0,0,0.092892723212638,0,0,-0.0450066917637725,0,0,0,0,0,-0.0969923612426051,0,0.16937498165142,0,0,-0.138387873254414,0,0,0.30943748513666,0,0,0,0,0,0,0,0,0,0.092892723212638,0,0,0,0.303100161864022,0.259807298178319,0,0.092892723212638,0,0,0,0,0,0.188749902151566,0,0.092892723212638,0,0,-0.0209916504963392,0,0,0,-0.104796384789156,0,0.0740655716194148,0,0.092892723212638,0,0,0,0,0.1171918008529,0.092892723212638,0,0,0,0,0,0,0,0,0.092892723212638,0.046446361606319,0,0,0,-0.49925296142127,-0.0247755787802223,0,-0.0538368135706024,0,0,-0.0397408981306245,0,0,0,0,0,0.216911519688089,0.053347066797183,0,0,0,0,0,0,0,0,0,0.42641924789947,0,0,0,0,0,0,0,0.086810294093196,0,0,0,0.127729356763019,0.08468749082571,0,0,0.0674121911692161,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.659962504967118,0,0,0,0,0,0,-0.24153047905039,-0.283220399823148,-0.10205079373997,0,0,0,0.177406027696373,0,0,0,0,-0.0667773874189013,0,0,0.234383601705801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137593213616662,0,0,0,0,0,0,0.248908044618349,0,0,0,0,0,0,0.046446361606319,0,0,0,0,0,0,0,0,0,0,0,0.234383601705801,0,0.61282390698982,0.046446361606319,0,0.1171918008529,0,0,0,0.092892723212638,0.243563582052711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.092892723212638,0.0128742549439995,0,0,0,0.213333018242426,0,0,0,0,0,0,0,0,0.092892723212638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34093031616354,0,0,0,0,0,0.092892723212638,0,0.318259179734501,0,0,0,0,0,0,0,0,0,0.16937498165142,0,0,0,-0.0482220752390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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=3H100-72-5 | |rna_catalog_number=3H100-72-5 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=1 | |rna_weight_ug=1 | ||
|sample_age=22 | |sample_age=22 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.86425081020986e-207!GO:0043227;membrane-bound organelle;4.22412294966486e-186!GO:0043231;intracellular membrane-bound organelle;6.27016312479582e-186!GO:0043226;organelle;3.58799184093014e-173!GO:0043229;intracellular organelle;1.32523240088415e-172!GO:0005737;cytoplasm;2.07974290948697e-130!GO:0044422;organelle part;3.22947482754986e-108!GO:0044446;intracellular organelle part;1.20262366272136e-106!GO:0043170;macromolecule metabolic process;3.88297365394507e-95!GO:0044444;cytoplasmic part;4.80114851345418e-95!GO:0044237;cellular metabolic process;5.88357811163429e-93!GO:0044238;primary metabolic process;2.12325145404999e-92!GO:0005634;nucleus;5.17558877969686e-92!GO:0032991;macromolecular complex;1.16644059073632e-83!GO:0044428;nuclear part;3.44147841135122e-75!GO:0003723;RNA binding;9.93396937631639e-71!GO:0030529;ribonucleoprotein complex;1.11548729533739e-69!GO:0043283;biopolymer metabolic process;9.01167033935112e-67!GO:0005515;protein binding;1.16095576099946e-63!GO:0043233;organelle lumen;4.38906982729157e-62!GO:0031974;membrane-enclosed lumen;4.38906982729157e-62!GO:0010467;gene expression;9.46108454727542e-59!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.83156255349161e-53!GO:0006396;RNA processing;2.22774115851918e-49!GO:0019538;protein metabolic process;1.88071097294988e-48!GO:0031981;nuclear lumen;6.37429918411576e-46!GO:0006412;translation;8.45800640188324e-46!GO:0044267;cellular protein metabolic process;1.36186382631585e-45!GO:0044260;cellular macromolecule metabolic process;1.85142880204809e-44!GO:0016071;mRNA metabolic process;1.78519695646075e-43!GO:0043234;protein complex;2.34355011512358e-42!GO:0033036;macromolecule localization;2.55879459662003e-42!GO:0031090;organelle membrane;6.21794532677451e-42!GO:0015031;protein transport;6.25576167305407e-42!GO:0005739;mitochondrion;9.51986165169068e-41!GO:0045184;establishment of protein localization;1.16010086694278e-39!GO:0008380;RNA splicing;1.66413284403632e-38!GO:0008104;protein localization;1.98051613952995e-38!GO:0006397;mRNA processing;7.32835497723856e-37!GO:0003676;nucleic acid binding;1.69943184499723e-36!GO:0005840;ribosome;3.66180879297267e-36!GO:0009059;macromolecule biosynthetic process;1.19968737643445e-35!GO:0031967;organelle envelope;2.67722344966588e-33!GO:0016070;RNA metabolic process;4.68333999096075e-33!GO:0031975;envelope;5.71962514468903e-33!GO:0003735;structural constituent of ribosome;5.02515592034565e-31!GO:0016043;cellular component organization and biogenesis;4.14066536430877e-30!GO:0005829;cytosol;8.2480077972456e-30!GO:0044429;mitochondrial part;8.56570336203256e-30!GO:0005654;nucleoplasm;1.3556212508895e-29!GO:0009058;biosynthetic process;3.88171909429512e-29!GO:0033279;ribosomal subunit;6.3661580088217e-29!GO:0044249;cellular biosynthetic process;3.36418744636377e-28!GO:0006886;intracellular protein transport;4.91918623163976e-28!GO:0005681;spliceosome;5.28834495992398e-28!GO:0046907;intracellular transport;1.84452398234983e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.70911398244808e-26!GO:0065003;macromolecular complex assembly;7.23802754651685e-26!GO:0006259;DNA metabolic process;7.58912159861652e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.21098879212679e-26!GO:0044451;nucleoplasm part;4.3172613005532e-24!GO:0006512;ubiquitin cycle;1.09570831408813e-23!GO:0012501;programmed cell death;2.6312920407455e-22!GO:0006915;apoptosis;3.39909320658263e-22!GO:0044445;cytosolic part;3.48716342297448e-22!GO:0022607;cellular component assembly;5.51371675132689e-22!GO:0006996;organelle organization and biogenesis;2.75862384211565e-21!GO:0043412;biopolymer modification;2.97661796708805e-21!GO:0019866;organelle inner membrane;3.80251697380376e-21!GO:0044265;cellular macromolecule catabolic process;6.85618719884591e-21!GO:0008219;cell death;1.25209589563991e-20!GO:0016265;death;1.25209589563991e-20!GO:0005740;mitochondrial envelope;1.71812224530822e-20!GO:0000166;nucleotide binding;5.01106814474723e-20!GO:0006511;ubiquitin-dependent protein catabolic process;6.42315462337011e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;6.50479618409285e-20!GO:0044257;cellular protein catabolic process;6.87557423290746e-20!GO:0019941;modification-dependent protein catabolic process;7.87809000520425e-20!GO:0043632;modification-dependent macromolecule catabolic process;7.87809000520425e-20!GO:0031966;mitochondrial membrane;1.06615910753961e-19!GO:0051649;establishment of cellular localization;1.4340401792725e-19!GO:0051641;cellular localization;1.7307003229562e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.61255886126506e-19!GO:0016462;pyrophosphatase activity;4.01488386655091e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;4.73003565644011e-19!GO:0006464;protein modification process;7.38801841605217e-19!GO:0043285;biopolymer catabolic process;1.76437816274966e-18!GO:0008134;transcription factor binding;1.76437816274966e-18!GO:0017111;nucleoside-triphosphatase activity;1.77756116197169e-18!GO:0005743;mitochondrial inner membrane;2.4090052030152e-18!GO:0006119;oxidative phosphorylation;4.09184812741425e-18!GO:0050794;regulation of cellular process;1.36242057209318e-17!GO:0043687;post-translational protein modification;1.88659567219035e-17!GO:0022618;protein-RNA complex assembly;2.89451845431555e-17!GO:0012505;endomembrane system;3.04411927889669e-17!GO:0016874;ligase activity;3.35974262762966e-17!GO:0016604;nuclear body;1.89541626139823e-16!GO:0005730;nucleolus;2.0727782194042e-16!GO:0044455;mitochondrial membrane part;3.64756962688984e-16!GO:0009057;macromolecule catabolic process;3.86743603880513e-16!GO:0048770;pigment granule;7.64222035888955e-16!GO:0042470;melanosome;7.64222035888955e-16!GO:0015934;large ribosomal subunit;1.86966149358305e-15!GO:0006605;protein targeting;4.4557616313602e-15!GO:0044248;cellular catabolic process;9.84875612720991e-15!GO:0030163;protein catabolic process;1.36037769713993e-14!GO:0016607;nuclear speck;1.91217851040056e-14!GO:0015935;small ribosomal subunit;2.02554641862268e-14!GO:0016192;vesicle-mediated transport;3.81475159990809e-14!GO:0032553;ribonucleotide binding;5.06608556823292e-14!GO:0032555;purine ribonucleotide binding;5.06608556823292e-14!GO:0042981;regulation of apoptosis;5.81759691712554e-14!GO:0019222;regulation of metabolic process;6.35660559030115e-14!GO:0043067;regulation of programmed cell death;8.86809128347955e-14!GO:0006974;response to DNA damage stimulus;1.00287428745715e-13!GO:0006457;protein folding;1.01832042248444e-13!GO:0008135;translation factor activity, nucleic acid binding;1.3129105425282e-13!GO:0006913;nucleocytoplasmic transport;2.06842945685906e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.5759545232886e-13!GO:0017076;purine nucleotide binding;2.74346924187095e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;3.91695677868613e-13!GO:0000375;RNA splicing, via transesterification reactions;3.91695677868613e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.91695677868613e-13!GO:0051169;nuclear transport;4.51558960032698e-13!GO:0005746;mitochondrial respiratory chain;6.06306207061634e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.31919896788935e-13!GO:0031965;nuclear membrane;7.15179064078857e-13!GO:0005635;nuclear envelope;7.30230673530398e-13!GO:0000502;proteasome complex (sensu Eukaryota);7.4446041733055e-13!GO:0043228;non-membrane-bound organelle;7.45017673721515e-13!GO:0043232;intracellular non-membrane-bound organelle;7.45017673721515e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.16389102309276e-13!GO:0016887;ATPase activity;1.03820570297087e-12!GO:0042623;ATPase activity, coupled;1.04752409084395e-12!GO:0051276;chromosome organization and biogenesis;1.24205560559007e-12!GO:0006323;DNA packaging;1.34859080283127e-12!GO:0005794;Golgi apparatus;1.38934220463144e-12!GO:0007049;cell cycle;1.85869754572007e-12!GO:0050789;regulation of biological process;2.22501893943348e-12!GO:0005524;ATP binding;2.24621424720524e-12!GO:0031323;regulation of cellular metabolic process;4.43185854313866e-12!GO:0032559;adenyl ribonucleotide binding;4.70934240819219e-12!GO:0044453;nuclear membrane part;5.19414777430845e-12!GO:0006793;phosphorus metabolic process;1.33194529091345e-11!GO:0006796;phosphate metabolic process;1.33194529091345e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.52202057941851e-11!GO:0003954;NADH dehydrogenase activity;1.52202057941851e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.52202057941851e-11!GO:0006281;DNA repair;1.54259990230528e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.94318529622127e-11!GO:0006446;regulation of translational initiation;2.14528439913214e-11!GO:0031980;mitochondrial lumen;2.14528439913214e-11!GO:0005759;mitochondrial matrix;2.14528439913214e-11!GO:0003712;transcription cofactor activity;3.52919942490676e-11!GO:0030554;adenyl nucleotide binding;3.86783584799873e-11!GO:0016568;chromatin modification;4.81826869212949e-11!GO:0006413;translational initiation;6.83975897639099e-11!GO:0048523;negative regulation of cellular process;9.52823314421257e-11!GO:0008639;small protein conjugating enzyme activity;1.14017855773632e-10!GO:0044432;endoplasmic reticulum part;1.2711316474667e-10!GO:0005783;endoplasmic reticulum;1.351031757611e-10!GO:0004842;ubiquitin-protein ligase activity;1.47554022472817e-10!GO:0042254;ribosome biogenesis and assembly;1.63372739135081e-10!GO:0005773;vacuole;2.86763709051782e-10!GO:0051246;regulation of protein metabolic process;3.01178210347845e-10!GO:0006403;RNA localization;3.3817637155593e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.49977179541298e-10!GO:0042773;ATP synthesis coupled electron transport;3.49977179541298e-10!GO:0010468;regulation of gene expression;3.56137085326632e-10!GO:0004386;helicase activity;3.61698323947187e-10!GO:0048193;Golgi vesicle transport;4.04377540934191e-10!GO:0050657;nucleic acid transport;4.36735835692636e-10!GO:0051236;establishment of RNA localization;4.36735835692636e-10!GO:0050658;RNA transport;4.36735835692636e-10!GO:0006366;transcription from RNA polymerase II promoter;4.94184448134455e-10!GO:0016310;phosphorylation;5.65894637328514e-10!GO:0051082;unfolded protein binding;5.89479017458855e-10!GO:0017038;protein import;7.53415931182756e-10!GO:0019787;small conjugating protein ligase activity;7.78519918562427e-10!GO:0030964;NADH dehydrogenase complex (quinone);8.11271852916161e-10!GO:0045271;respiratory chain complex I;8.11271852916161e-10!GO:0005747;mitochondrial respiratory chain complex I;8.11271852916161e-10!GO:0003743;translation initiation factor activity;9.11401953919573e-10!GO:0006350;transcription;1.04339773558662e-09!GO:0005768;endosome;1.20220775378559e-09!GO:0008026;ATP-dependent helicase activity;1.7221668778741e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.75640988797963e-09!GO:0000323;lytic vacuole;1.84935796208726e-09!GO:0005764;lysosome;1.84935796208726e-09!GO:0016787;hydrolase activity;2.88608858311189e-09!GO:0043069;negative regulation of programmed cell death;3.67080076384787e-09!GO:0005643;nuclear pore;4.65512317494036e-09!GO:0065007;biological regulation;5.07397243722298e-09!GO:0019829;cation-transporting ATPase activity;5.50281992982928e-09!GO:0043066;negative regulation of apoptosis;6.19548128936118e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.47817808132175e-09!GO:0048519;negative regulation of biological process;8.32974068409934e-09!GO:0005694;chromosome;9.44944228706934e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.19522261319213e-08!GO:0009719;response to endogenous stimulus;1.22056756056271e-08!GO:0003713;transcription coactivator activity;1.25884856954517e-08!GO:0065009;regulation of a molecular function;1.37241103575733e-08!GO:0007243;protein kinase cascade;1.69386365950234e-08!GO:0051028;mRNA transport;1.71145637625394e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.32685527542491e-08!GO:0031324;negative regulation of cellular metabolic process;2.3981020957724e-08!GO:0009259;ribonucleotide metabolic process;2.40819068038943e-08!GO:0065002;intracellular protein transport across a membrane;2.47926390838656e-08!GO:0008565;protein transporter activity;2.54850261511984e-08!GO:0005789;endoplasmic reticulum membrane;2.55386279801311e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.56747366772935e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.74215081918283e-08!GO:0051726;regulation of cell cycle;2.90445490185865e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.79798887518444e-08!GO:0051186;cofactor metabolic process;3.91083279666971e-08!GO:0009056;catabolic process;3.91083279666971e-08!GO:0000074;regulation of progression through cell cycle;3.94634095243606e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.15678400645872e-08!GO:0022402;cell cycle process;4.93655288605002e-08!GO:0006417;regulation of translation;5.75234016191376e-08!GO:0016563;transcription activator activity;7.61325520013119e-08!GO:0065004;protein-DNA complex assembly;8.41535843076765e-08!GO:0016881;acid-amino acid ligase activity;8.83400267992388e-08!GO:0006163;purine nucleotide metabolic process;9.27924231479479e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.65250834573439e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.13194654982701e-07!GO:0051170;nuclear import;1.27010939911453e-07!GO:0005761;mitochondrial ribosome;1.3024679005786e-07!GO:0000313;organellar ribosome;1.3024679005786e-07!GO:0009150;purine ribonucleotide metabolic process;1.31517351581772e-07!GO:0006606;protein import into nucleus;1.31517351581772e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.37360043315945e-07!GO:0032774;RNA biosynthetic process;1.43564926288201e-07!GO:0006351;transcription, DNA-dependent;1.59865168280334e-07!GO:0007242;intracellular signaling cascade;1.6509374368039e-07!GO:0005793;ER-Golgi intermediate compartment;1.75200308624641e-07!GO:0046930;pore complex;1.8121538170472e-07!GO:0015986;ATP synthesis coupled proton transport;1.8576881191543e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.8576881191543e-07!GO:0009260;ribonucleotide biosynthetic process;1.89394981119165e-07!GO:0006164;purine nucleotide biosynthetic process;2.02695172959442e-07!GO:0016072;rRNA metabolic process;2.30026879095165e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.37012362218895e-07!GO:0006732;coenzyme metabolic process;2.67115021294983e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.73886613842195e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.75026438688376e-07!GO:0006333;chromatin assembly or disassembly;3.06976890618646e-07!GO:0032446;protein modification by small protein conjugation;3.10299928626513e-07!GO:0006364;rRNA processing;3.57934439849567e-07!GO:0006916;anti-apoptosis;3.57934439849567e-07!GO:0045449;regulation of transcription;4.99139718930536e-07!GO:0016567;protein ubiquitination;4.99139718930536e-07!GO:0043566;structure-specific DNA binding;5.1229212212854e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.97368366700241e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.72014529421264e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.87730702203368e-07!GO:0009141;nucleoside triphosphate metabolic process;8.34056800947064e-07!GO:0003697;single-stranded DNA binding;8.38193460133952e-07!GO:0031326;regulation of cellular biosynthetic process;9.02273756726999e-07!GO:0009060;aerobic respiration;1.0294351389786e-06!GO:0044427;chromosomal part;1.09308519655287e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.10690342630276e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.10690342630276e-06!GO:0000151;ubiquitin ligase complex;1.14843811794597e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.25730524561851e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.29786052154338e-06!GO:0006399;tRNA metabolic process;1.3940638786935e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.40352180130638e-06!GO:0006754;ATP biosynthetic process;1.49158735887431e-06!GO:0006753;nucleoside phosphate metabolic process;1.49158735887431e-06!GO:0004298;threonine endopeptidase activity;1.60508448053254e-06!GO:0016740;transferase activity;1.88238870096976e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.92379926500771e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.92379926500771e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.13533621114819e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.13533621114819e-06!GO:0009892;negative regulation of metabolic process;2.20936547026911e-06!GO:0044440;endosomal part;2.30250952909213e-06!GO:0010008;endosome membrane;2.30250952909213e-06!GO:0000785;chromatin;2.30370326059165e-06!GO:0016481;negative regulation of transcription;2.41083754533299e-06!GO:0046034;ATP metabolic process;2.46447376173749e-06!GO:0019899;enzyme binding;2.46447376173749e-06!GO:0005770;late endosome;2.60162871329898e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.26050554678757e-06!GO:0005774;vacuolar membrane;4.1218323606747e-06!GO:0006401;RNA catabolic process;4.52652755215858e-06!GO:0006260;DNA replication;4.57039641628742e-06!GO:0045259;proton-transporting ATP synthase complex;4.6561184202758e-06!GO:0045786;negative regulation of progression through cell cycle;4.82647034737091e-06!GO:0006461;protein complex assembly;4.87621716588868e-06!GO:0009889;regulation of biosynthetic process;5.89741923092149e-06!GO:0007005;mitochondrion organization and biogenesis;6.01792678287217e-06!GO:0050790;regulation of catalytic activity;6.45049837357338e-06!GO:0016564;transcription repressor activity;6.65291200187773e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.10113305532323e-06!GO:0006355;regulation of transcription, DNA-dependent;8.67154462566112e-06!GO:0043065;positive regulation of apoptosis;9.09807778885867e-06!GO:0045333;cellular respiration;9.33600987450055e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.0629465623764e-05!GO:0015399;primary active transmembrane transporter activity;1.0629465623764e-05!GO:0006950;response to stress;1.10305797127144e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.19835532659933e-05!GO:0000245;spliceosome assembly;1.2053556859177e-05!GO:0005765;lysosomal membrane;1.2053556859177e-05!GO:0008270;zinc ion binding;1.20891557052648e-05!GO:0006613;cotranslational protein targeting to membrane;1.21839960368464e-05!GO:0009055;electron carrier activity;1.2378854525145e-05!GO:0003724;RNA helicase activity;1.25525935269047e-05!GO:0048475;coated membrane;1.27663179548024e-05!GO:0030117;membrane coat;1.27663179548024e-05!GO:0043068;positive regulation of programmed cell death;1.35777957124388e-05!GO:0030120;vesicle coat;1.4248694606907e-05!GO:0030662;coated vesicle membrane;1.4248694606907e-05!GO:0044437;vacuolar part;1.67893248738487e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.89434556881001e-05!GO:0009615;response to virus;2.00089566755042e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.12792260731896e-05!GO:0003924;GTPase activity;2.20831499671075e-05!GO:0008234;cysteine-type peptidase activity;2.29103843370398e-05!GO:0051168;nuclear export;2.83539150719468e-05!GO:0006099;tricarboxylic acid cycle;3.02537150721494e-05!GO:0046356;acetyl-CoA catabolic process;3.02537150721494e-05!GO:0044431;Golgi apparatus part;3.32661088331275e-05!GO:0006402;mRNA catabolic process;4.49627666353981e-05!GO:0008654;phospholipid biosynthetic process;4.49627666353981e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.9109140934518e-05!GO:0031982;vesicle;5.74804779178399e-05!GO:0016779;nucleotidyltransferase activity;6.82216361565674e-05!GO:0006352;transcription initiation;7.16557339169996e-05!GO:0008047;enzyme activator activity;7.30096480596513e-05!GO:0051188;cofactor biosynthetic process;7.40132064078597e-05!GO:0006917;induction of apoptosis;7.4462641031966e-05!GO:0007264;small GTPase mediated signal transduction;7.78948671859048e-05!GO:0009117;nucleotide metabolic process;7.83479493271548e-05!GO:0006084;acetyl-CoA metabolic process;8.72917336529962e-05!GO:0016363;nuclear matrix;0.000110737860984578!GO:0012502;induction of programmed cell death;0.000112222566347475!GO:0048522;positive regulation of cellular process;0.000113055235313143!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000118923856147829!GO:0004812;aminoacyl-tRNA ligase activity;0.000118923856147829!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000118923856147829!GO:0003729;mRNA binding;0.000119697832571415!GO:0003677;DNA binding;0.000155599952590097!GO:0000278;mitotic cell cycle;0.000162876768284093!GO:0006752;group transfer coenzyme metabolic process;0.000169444944916393!GO:0031410;cytoplasmic vesicle;0.00017108462426005!GO:0005813;centrosome;0.000172006052195501!GO:0043492;ATPase activity, coupled to movement of substances;0.000185087437843793!GO:0006261;DNA-dependent DNA replication;0.000195932361543636!GO:0008632;apoptotic program;0.000215267058349876!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000216107842087425!GO:0009108;coenzyme biosynthetic process;0.000218935121429053!GO:0009109;coenzyme catabolic process;0.000248133378701647!GO:0005885;Arp2/3 protein complex;0.000248431746429409!GO:0043038;amino acid activation;0.000255359204510832!GO:0006418;tRNA aminoacylation for protein translation;0.000255359204510832!GO:0043039;tRNA aminoacylation;0.000255359204510832!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000266213318769095!GO:0008186;RNA-dependent ATPase activity;0.000281913055160141!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000284885087328063!GO:0006612;protein targeting to membrane;0.000319959234082678!GO:0005667;transcription factor complex;0.000331698155444848!GO:0005815;microtubule organizing center;0.000363530511887204!GO:0004674;protein serine/threonine kinase activity;0.000367638731760934!GO:0005798;Golgi-associated vesicle;0.00042037121935515!GO:0046914;transition metal ion binding;0.00042824123907036!GO:0002376;immune system process;0.000430486951517401!GO:0051427;hormone receptor binding;0.000451154759434769!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000505359253848963!GO:0043021;ribonucleoprotein binding;0.000560865471293361!GO:0016197;endosome transport;0.000592125263255777!GO:0005525;GTP binding;0.0005994032064218!GO:0016251;general RNA polymerase II transcription factor activity;0.000610527195890068!GO:0009967;positive regulation of signal transduction;0.000634023088269665!GO:0016044;membrane organization and biogenesis;0.000738644235027643!GO:0031072;heat shock protein binding;0.000752896786494586!GO:0035257;nuclear hormone receptor binding;0.000760455827078753!GO:0051336;regulation of hydrolase activity;0.000785734922940106!GO:0004004;ATP-dependent RNA helicase activity;0.000835444073115855!GO:0030176;integral to endoplasmic reticulum membrane;0.000841385266669999!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000863370850771261!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000871699641620207!GO:0031497;chromatin assembly;0.000875240889167072!GO:0006414;translational elongation;0.000900139456916613!GO:0003690;double-stranded DNA binding;0.00090551167267104!GO:0033116;ER-Golgi intermediate compartment membrane;0.000935701627097954!GO:0005769;early endosome;0.000954686001505409!GO:0051187;cofactor catabolic process;0.000956853820422656!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.000973949502950232!GO:0003714;transcription corepressor activity;0.000980702771995608!GO:0006334;nucleosome assembly;0.000998561590961965!GO:0005637;nuclear inner membrane;0.00104554392851893!GO:0030384;phosphoinositide metabolic process;0.00112760431674161!GO:0031988;membrane-bound vesicle;0.00116531372828768!GO:0043087;regulation of GTPase activity;0.00116898190434232!GO:0031902;late endosome membrane;0.0012577245589557!GO:0000139;Golgi membrane;0.00131607718157718!GO:0006818;hydrogen transport;0.00137064071255547!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00141152157209438!GO:0046489;phosphoinositide biosynthetic process;0.00145903368068916!GO:0046467;membrane lipid biosynthetic process;0.00161984269064732!GO:0046474;glycerophospholipid biosynthetic process;0.00164568681982597!GO:0007265;Ras protein signal transduction;0.00168154898002968!GO:0043623;cellular protein complex assembly;0.00170344578883701!GO:0009966;regulation of signal transduction;0.00174104024048598!GO:0060090;molecular adaptor activity;0.00175892269227599!GO:0045454;cell redox homeostasis;0.00176770028861893!GO:0042613;MHC class II protein complex;0.0018225364792211!GO:0015992;proton transport;0.00186690415240698!GO:0046966;thyroid hormone receptor binding;0.00187044271626366!GO:0007050;cell cycle arrest;0.00190975037032219!GO:0030433;ER-associated protein catabolic process;0.0019111436142378!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0019111436142378!GO:0006672;ceramide metabolic process;0.00201937397149504!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00203225719803608!GO:0003899;DNA-directed RNA polymerase activity;0.00209133010941433!GO:0005048;signal sequence binding;0.00218384222025236!GO:0016023;cytoplasmic membrane-bound vesicle;0.00222614223159951!GO:0043488;regulation of mRNA stability;0.00232839964836587!GO:0043487;regulation of RNA stability;0.00232839964836587!GO:0005096;GTPase activator activity;0.00237055429116555!GO:0030695;GTPase regulator activity;0.00241033495730081!GO:0051789;response to protein stimulus;0.00248028796881956!GO:0006986;response to unfolded protein;0.00248028796881956!GO:0004722;protein serine/threonine phosphatase activity;0.00253540889133941!GO:0051252;regulation of RNA metabolic process;0.00262665086197403!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00267634769585832!GO:0005762;mitochondrial large ribosomal subunit;0.00270372406384085!GO:0000315;organellar large ribosomal subunit;0.00270372406384085!GO:0016853;isomerase activity;0.00270553973999049!GO:0019783;small conjugating protein-specific protease activity;0.00272631085187103!GO:0045892;negative regulation of transcription, DNA-dependent;0.00277422068655229!GO:0005788;endoplasmic reticulum lumen;0.00277511563117304!GO:0046519;sphingoid metabolic process;0.00277511563117304!GO:0006650;glycerophospholipid metabolic process;0.00277511563117304!GO:0004518;nuclease activity;0.00286489361187516!GO:0030658;transport vesicle membrane;0.00291030088456944!GO:0007034;vacuolar transport;0.00305110413871194!GO:0009165;nucleotide biosynthetic process;0.00308310099052475!GO:0046822;regulation of nucleocytoplasmic transport;0.00308310099052475!GO:0031968;organelle outer membrane;0.00311929594797699!GO:0006611;protein export from nucleus;0.00313283721109889!GO:0003711;transcription elongation regulator activity;0.00315893476456879!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00327778405059734!GO:0008287;protein serine/threonine phosphatase complex;0.00347098477851328!GO:0006607;NLS-bearing substrate import into nucleus;0.00361331463145791!GO:0006310;DNA recombination;0.00361331463145791!GO:0030097;hemopoiesis;0.00361331463145791!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00361331463145791!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00361331463145791!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00361331463145791!GO:0048518;positive regulation of biological process;0.00362027410025131!GO:0003678;DNA helicase activity;0.00365288276582443!GO:0022415;viral reproductive process;0.00367474777926655!GO:0022890;inorganic cation transmembrane transporter activity;0.00371242454384339!GO:0006405;RNA export from nucleus;0.00379892422635925!GO:0006891;intra-Golgi vesicle-mediated transport;0.00379892422635925!GO:0032561;guanyl ribonucleotide binding;0.00381434366762006!GO:0019001;guanyl nucleotide binding;0.00381434366762006!GO:0019867;outer membrane;0.00385619888121162!GO:0032318;regulation of Ras GTPase activity;0.00387435467046674!GO:0004843;ubiquitin-specific protease activity;0.00395835323413954!GO:0004576;oligosaccharyl transferase activity;0.00411008199225694!GO:0051338;regulation of transferase activity;0.0042116689199751!GO:0032940;secretion by cell;0.00427631257818036!GO:0006383;transcription from RNA polymerase III promoter;0.00443269762362979!GO:0005684;U2-dependent spliceosome;0.00448221587190271!GO:0015631;tubulin binding;0.00451698894254605!GO:0005669;transcription factor TFIID complex;0.00457158465608071!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0046190177548126!GO:0031625;ubiquitin protein ligase binding;0.00465160133411465!GO:0017091;AU-rich element binding;0.00465160133411465!GO:0050779;RNA destabilization;0.00465160133411465!GO:0000289;poly(A) tail shortening;0.00465160133411465!GO:0045045;secretory pathway;0.00486162806128782!GO:0003725;double-stranded RNA binding;0.00495411269526057!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00519644535574154!GO:0048468;cell development;0.0052090986867954!GO:0006984;ER-nuclear signaling pathway;0.00548754019783386!GO:0043681;protein import into mitochondrion;0.00548754019783386!GO:0004197;cysteine-type endopeptidase activity;0.00578669583596287!GO:0006338;chromatin remodeling;0.00585001761374892!GO:0043549;regulation of kinase activity;0.00606558730231957!GO:0048500;signal recognition particle;0.00637705206821035!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00640761832854296!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00640761832854296!GO:0051329;interphase of mitotic cell cycle;0.0066247438081047!GO:0008033;tRNA processing;0.00667338032254754!GO:0000118;histone deacetylase complex;0.00669481488863543!GO:0008250;oligosaccharyl transferase complex;0.00680776360129014!GO:0030258;lipid modification;0.00682107133685776!GO:0018193;peptidyl-amino acid modification;0.00692064567658771!GO:0051223;regulation of protein transport;0.00700373258161384!GO:0016584;nucleosome positioning;0.00713707192505908!GO:0016301;kinase activity;0.00732060431643056!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00736146218314874!GO:0031252;leading edge;0.00736607903610598!GO:0004221;ubiquitin thiolesterase activity;0.00746489732460264!GO:0030660;Golgi-associated vesicle membrane;0.00746651319798459!GO:0051090;regulation of transcription factor activity;0.00785629376428948!GO:0043022;ribosome binding;0.00789714945029877!GO:0044452;nucleolar part;0.00801477337750075!GO:0004527;exonuclease activity;0.00811987089535548!GO:0002757;immune response-activating signal transduction;0.00827397485879646!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00829823467171016!GO:0006368;RNA elongation from RNA polymerase II promoter;0.00836993671111719!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00843052143068258!GO:0045047;protein targeting to ER;0.00843052143068258!GO:0051325;interphase;0.0085053903729704!GO:0006595;polyamine metabolic process;0.00866978345381585!GO:0016859;cis-trans isomerase activity;0.00872539190379232!GO:0045859;regulation of protein kinase activity;0.00875528972992615!GO:0005083;small GTPase regulator activity;0.00880937619481091!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00910215585979669!GO:0004177;aminopeptidase activity;0.00917054546948756!GO:0015923;mannosidase activity;0.00917054546948756!GO:0030127;COPII vesicle coat;0.0092136327226482!GO:0012507;ER to Golgi transport vesicle membrane;0.0092136327226482!GO:0022403;cell cycle phase;0.00926463855641601!GO:0000082;G1/S transition of mitotic cell cycle;0.00931133360220675!GO:0006643;membrane lipid metabolic process;0.00934759596423526!GO:0008168;methyltransferase activity;0.00936921534544402!GO:0005741;mitochondrial outer membrane;0.00943376911171549!GO:0048471;perinuclear region of cytoplasm;0.00943449107576106!GO:0047485;protein N-terminus binding;0.00963469092838213!GO:0030521;androgen receptor signaling pathway;0.0098499181550333!GO:0007006;mitochondrial membrane organization and biogenesis;0.0100858499166687!GO:0016741;transferase activity, transferring one-carbon groups;0.0100972407851405!GO:0003746;translation elongation factor activity;0.0100972407851405!GO:0008139;nuclear localization sequence binding;0.0106393975045072!GO:0016311;dephosphorylation;0.0106913317741307!GO:0030518;steroid hormone receptor signaling pathway;0.0107738331339288!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0108041603938275!GO:0004667;prostaglandin-D synthase activity;0.0108041603938275!GO:0050802;circadian sleep/wake cycle, sleep;0.0108041603938275!GO:0022410;circadian sleep/wake cycle process;0.0108041603938275!GO:0042749;regulation of circadian sleep/wake cycle;0.0108041603938275!GO:0030880;RNA polymerase complex;0.0110698260845868!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0111744686921262!GO:0006354;RNA elongation;0.0112193134288369!GO:0008312;7S RNA binding;0.0113460695931443!GO:0003682;chromatin binding;0.0113818166805954!GO:0045947;negative regulation of translational initiation;0.0117568551667479!GO:0005070;SH3/SH2 adaptor activity;0.0120425926311917!GO:0006302;double-strand break repair;0.0122876230917065!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0123760466711794!GO:0000287;magnesium ion binding;0.0129674949606764!GO:0016788;hydrolase activity, acting on ester bonds;0.013028776928038!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0132332875158011!GO:0030134;ER to Golgi transport vesicle;0.0132701346827496!GO:0006468;protein amino acid phosphorylation;0.0134554642235422!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.013632084163692!GO:0051059;NF-kappaB binding;0.0136463748460154!GO:0006897;endocytosis;0.0136776424503539!GO:0010324;membrane invagination;0.0136776424503539!GO:0051052;regulation of DNA metabolic process;0.0137368159528398!GO:0007040;lysosome organization and biogenesis;0.0138907309142581!GO:0007041;lysosomal transport;0.0139611764747143!GO:0006516;glycoprotein catabolic process;0.014040567716781!GO:0016790;thiolester hydrolase activity;0.0141838116933962!GO:0005869;dynactin complex;0.0141838116933962!GO:0045321;leukocyte activation;0.0142115994166552!GO:0005057;receptor signaling protein activity;0.0142683415550895!GO:0009893;positive regulation of metabolic process;0.0145804170161351!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0145920271355872!GO:0018196;peptidyl-asparagine modification;0.0145920271355872!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0145920271355872!GO:0005099;Ras GTPase activator activity;0.0149863513914413!GO:0001667;ameboidal cell migration;0.0152006827464346!GO:0032027;myosin light chain binding;0.0152006827464346!GO:0002764;immune response-regulating signal transduction;0.0153369927580424!GO:0042802;identical protein binding;0.0155713489441444!GO:0031901;early endosome membrane;0.0157314930613202!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0157898656230136!GO:0000428;DNA-directed RNA polymerase complex;0.0157898656230136!GO:0006376;mRNA splice site selection;0.0160913588811968!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0160913588811968!GO:0030118;clathrin coat;0.0160913588811968!GO:0045368;positive regulation of interleukin-13 biosynthetic process;0.0162323974520413!GO:0045366;regulation of interleukin-13 biosynthetic process;0.0162323974520413!GO:0030867;rough endoplasmic reticulum membrane;0.0163176831158521!GO:0003684;damaged DNA binding;0.016739179760515!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.017428343301256!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0174759245493352!GO:0006626;protein targeting to mitochondrion;0.0178135561679084!GO:0048487;beta-tubulin binding;0.0186124572647954!GO:0016791;phosphoric monoester hydrolase activity;0.0188258172158001!GO:0005791;rough endoplasmic reticulum;0.0193420166795363!GO:0030041;actin filament polymerization;0.0193420166795363!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0195210401395756!GO:0051348;negative regulation of transferase activity;0.0195458054974486!GO:0008637;apoptotic mitochondrial changes;0.0195458054974486!GO:0016272;prefoldin complex;0.0195735429477533!GO:0043506;regulation of JNK activity;0.0208334495346738!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0212294167344652!GO:0030968;unfolded protein response;0.0214239184750223!GO:0006506;GPI anchor biosynthetic process;0.0217403944596109!GO:0032507;maintenance of cellular protein localization;0.0228673092248006!GO:0030522;intracellular receptor-mediated signaling pathway;0.0228673092248006!GO:0022411;cellular component disassembly;0.0231784298630287!GO:0045941;positive regulation of transcription;0.0235248771606506!GO:0006904;vesicle docking during exocytosis;0.0237057767372915!GO:0048534;hemopoietic or lymphoid organ development;0.024149305857826!GO:0022406;membrane docking;0.0241866216084207!GO:0048278;vesicle docking;0.0241866216084207!GO:0006955;immune response;0.0243038713795013!GO:0007033;vacuole organization and biogenesis;0.0243555561620163!GO:0051235;maintenance of localization;0.0243555561620163!GO:0006839;mitochondrial transport;0.0244852351918685!GO:0004278;granzyme B activity;0.0247076077742216!GO:0008276;protein methyltransferase activity;0.0247076077742216!GO:0045893;positive regulation of transcription, DNA-dependent;0.0247076077742216!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0247385691549091!GO:0051092;activation of NF-kappaB transcription factor;0.0250236407790702!GO:0033673;negative regulation of kinase activity;0.0250921320017837!GO:0006469;negative regulation of protein kinase activity;0.0250921320017837!GO:0002521;leukocyte differentiation;0.0250921320017837!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0250921320017837!GO:0015002;heme-copper terminal oxidase activity;0.0250921320017837!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0250921320017837!GO:0004129;cytochrome-c oxidase activity;0.0250921320017837!GO:0030663;COPI coated vesicle membrane;0.0251909993988844!GO:0030126;COPI vesicle coat;0.0251909993988844!GO:0032200;telomere organization and biogenesis;0.0254599151142966!GO:0000723;telomere maintenance;0.0254599151142966!GO:0043414;biopolymer methylation;0.0259576710755667!GO:0004402;histone acetyltransferase activity;0.0260085053834445!GO:0004468;lysine N-acetyltransferase activity;0.0260085053834445!GO:0030036;actin cytoskeleton organization and biogenesis;0.0261544341861027!GO:0019058;viral infectious cycle;0.0263896666076295!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0266465943068472!GO:0046649;lymphocyte activation;0.0266744681678077!GO:0002520;immune system development;0.0279405024315931!GO:0006644;phospholipid metabolic process;0.0279489349076467!GO:0000314;organellar small ribosomal subunit;0.0281538711172086!GO:0005763;mitochondrial small ribosomal subunit;0.0281538711172086!GO:0031325;positive regulation of cellular metabolic process;0.0284200204619072!GO:0051301;cell division;0.0289002938071834!GO:0008624;induction of apoptosis by extracellular signals;0.0289080703804514!GO:0044262;cellular carbohydrate metabolic process;0.0289080703804514!GO:0009607;response to biotic stimulus;0.0290602276130697!GO:0019883;antigen processing and presentation of endogenous antigen;0.029097683333056!GO:0040029;regulation of gene expression, epigenetic;0.0302011528822622!GO:0008097;5S rRNA binding;0.0302865251699223!GO:0050851;antigen receptor-mediated signaling pathway;0.0305029163356093!GO:0000087;M phase of mitotic cell cycle;0.0308007909044065!GO:0008320;protein transmembrane transporter activity;0.0309134196172468!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.030927137962417!GO:0000119;mediator complex;0.0312050034908616!GO:0051920;peroxiredoxin activity;0.0315897641635593!GO:0045185;maintenance of protein localization;0.0315897641635593!GO:0005784;translocon complex;0.0318554419797092!GO:0019843;rRNA binding;0.0320488768552259!GO:0008017;microtubule binding;0.0321061127889825!GO:0015980;energy derivation by oxidation of organic compounds;0.0324851585119091!GO:0030119;AP-type membrane coat adaptor complex;0.0325526356459092!GO:0030659;cytoplasmic vesicle membrane;0.0341917986955039!GO:0012506;vesicle membrane;0.0341917986955039!GO:0004003;ATP-dependent DNA helicase activity;0.0344607616938378!GO:0007067;mitosis;0.0347523821296914!GO:0006497;protein amino acid lipidation;0.0347699357216673!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0354536066916343!GO:0032508;DNA duplex unwinding;0.0356812453083374!GO:0032392;DNA geometric change;0.0356812453083374!GO:0043306;positive regulation of mast cell degranulation;0.0366102580192371!GO:0045921;positive regulation of exocytosis;0.0366102580192371!GO:0043302;positive regulation of leukocyte degranulation;0.0366102580192371!GO:0019220;regulation of phosphate metabolic process;0.0366102580192371!GO:0051174;regulation of phosphorus metabolic process;0.0366102580192371!GO:0001819;positive regulation of cytokine production;0.0367680628074346!GO:0030133;transport vesicle;0.0367708237160944!GO:0000209;protein polyubiquitination;0.0368073541028138!GO:0051087;chaperone binding;0.0369034156913094!GO:0033157;regulation of intracellular protein transport;0.0369034156913094!GO:0042306;regulation of protein import into nucleus;0.0369034156913094!GO:0005819;spindle;0.0375413826293841!GO:0005097;Rab GTPase activator activity;0.0380407848678703!GO:0031124;mRNA 3'-end processing;0.0383099215924297!GO:0051098;regulation of binding;0.0388451245582827!GO:0019221;cytokine and chemokine mediated signaling pathway;0.0388697275575104!GO:0043284;biopolymer biosynthetic process;0.0388697275575104!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0388697275575104!GO:0050811;GABA receptor binding;0.0388697275575104!GO:0033033;negative regulation of myeloid cell apoptosis;0.0388697275575104!GO:0001803;regulation of type III hypersensitivity;0.0388697275575104!GO:0032733;positive regulation of interleukin-10 production;0.0388697275575104!GO:0033025;regulation of mast cell apoptosis;0.0388697275575104!GO:0001805;positive regulation of type III hypersensitivity;0.0388697275575104!GO:0033023;mast cell homeostasis;0.0388697275575104!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0388697275575104!GO:0033032;regulation of myeloid cell apoptosis;0.0388697275575104!GO:0001802;type III hypersensitivity;0.0388697275575104!GO:0033028;myeloid cell apoptosis;0.0388697275575104!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0388697275575104!GO:0033026;negative regulation of mast cell apoptosis;0.0388697275575104!GO:0033024;mast cell apoptosis;0.0388697275575104!GO:0042110;T cell activation;0.0388850532538226!GO:0000049;tRNA binding;0.0389452160722507!GO:0051651;maintenance of cellular localization;0.0401444921860147!GO:0033367;protein localization in mast cell secretory granule;0.0401444921860147!GO:0033365;protein localization in organelle;0.0401444921860147!GO:0033371;T cell secretory granule organization and biogenesis;0.0401444921860147!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0401444921860147!GO:0033375;protease localization in T cell secretory granule;0.0401444921860147!GO:0042629;mast cell granule;0.0401444921860147!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0401444921860147!GO:0033364;mast cell secretory granule organization and biogenesis;0.0401444921860147!GO:0033380;granzyme B localization in T cell secretory granule;0.0401444921860147!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0401444921860147!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0401444921860147!GO:0033368;protease localization in mast cell secretory granule;0.0401444921860147!GO:0033366;protein localization in secretory granule;0.0401444921860147!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0401444921860147!GO:0033374;protein localization in T cell secretory granule;0.0401444921860147!GO:0006289;nucleotide-excision repair;0.0402054113065948!GO:0008159;positive transcription elongation factor activity;0.0403014441005513!GO:0003702;RNA polymerase II transcription factor activity;0.040448019654553!GO:0006596;polyamine biosynthetic process;0.040448019654553!GO:0007259;JAK-STAT cascade;0.0406411716634413!GO:0022884;macromolecule transmembrane transporter activity;0.0407609492250172!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0407609492250172!GO:0000776;kinetochore;0.0407609492250172!GO:0043433;negative regulation of transcription factor activity;0.0414120889225464!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0414120889225464!GO:0000303;response to superoxide;0.0417576669782944!GO:0008180;signalosome;0.043193421594402!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0432174912893341!GO:0002819;regulation of adaptive immune response;0.0432174912893341!GO:0043281;regulation of caspase activity;0.0432875127818326!GO:0008629;induction of apoptosis by intracellular signals;0.0439721297433101!GO:0030137;COPI-coated vesicle;0.0440583577091722!GO:0008094;DNA-dependent ATPase activity;0.0445745305155474!GO:0019747;regulation of isoprenoid metabolic process;0.0450707079388869!GO:0044433;cytoplasmic vesicle part;0.0453417879502885!GO:0015036;disulfide oxidoreductase activity;0.0453538808458282!GO:0001516;prostaglandin biosynthetic process;0.046024165720168!GO:0046457;prostanoid biosynthetic process;0.046024165720168!GO:0030099;myeloid cell differentiation;0.0460403568125795!GO:0016860;intramolecular oxidoreductase activity;0.0460403568125795!GO:0004721;phosphoprotein phosphatase activity;0.04613860631581!GO:0004563;beta-N-acetylhexosaminidase activity;0.0465307389806481!GO:0048146;positive regulation of fibroblast proliferation;0.0465307389806481!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0467467628341612!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0467467628341612!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0469005492236773!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.047285854795626!GO:0005657;replication fork;0.0473066169414212!GO:0051539;4 iron, 4 sulfur cluster binding;0.0473066169414212!GO:0003756;protein disulfide isomerase activity;0.0473066169414212!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0473066169414212!GO:0008022;protein C-terminus binding;0.0478319260448594!GO:0016601;Rac protein signal transduction;0.0485964861591797!GO:0019079;viral genome replication;0.0489730740671062!GO:0006505;GPI anchor metabolic process;0.0493425110772215!GO:0042809;vitamin D receptor binding;0.0493468947436066 | |||
|sample_id=11228 | |sample_id=11228 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=NANOG{mouse}:2.59293666462;AIRE:2.11649186387;DMAP1_NCOR{1,2}_SMARC:1.98223898767;CREB1:1.86680356647;SPI1:1.83806444278;NFKB1_REL_RELA:1.83101082671;ATF5_CREB3:1.7227099311;LMO2:1.65446974895;FOXD3:1.64999042637;PAX2:1.62271947354;RUNX1..3:1.61654226052;SPIB:1.52165480371;NFIL3:1.4321359863;TGIF1:1.38557910372;RFX2..5_RFXANK_RFXAP:1.36680007886;ELF1,2,4:1.35569803058;ETS1,2:1.32741005656;ATF4:1.31369779961;FOXN1:1.30185852288;PAX6:1.26052997707;EN1,2:1.18073867565;PAX3,7:1.0887795343;FOX{F1,F2,J1}:0.9941953554;NANOG:0.946786754164;FOXP1:0.934836570403;BREu{core}:0.893076492554;BPTF:0.887469108931;MYFfamily:0.833542923053;FOXQ1:0.815475296076;IRF1,2:0.787104938434;FOXL1:0.773870010768;NHLH1,2:0.746103898795;HMX1:0.735707261405;FOXP3:0.718978216789;RORA:0.712380032544;HIF1A:0.704020910943;TLX2:0.702293455124;CRX:0.692494711833;ZBTB16:0.673628163211;POU2F1..3:0.673382068177;MYB:0.64453026773;ATF6:0.630285616616;NKX6-1,2:0.599275008577;FOXO1,3,4:0.531027354386;MYOD1:0.527813038006;PDX1:0.460197521403;SREBF1,2:0.450776927804;HOXA9_MEIS1:0.439889121369;IRF7:0.425248040245;RXRA_VDR{dimer}:0.391444566259;BACH2:0.389598237525;OCT4_SOX2{dimer}:0.387404634733;FOS_FOS{B,L1}_JUN{B,D}:0.3870731574;FOXA2:0.376216028299;ZEB1:0.372997103145;HBP1_HMGB_SSRP1_UBTF:0.368837072146;ELK1,4_GABP{A,B1}:0.331487293754;FOX{D1,D2}:0.294614906206;HMGA1,2:0.278842588491;FOSL2:0.269129502797;NR6A1:0.243522590263;SMAD1..7,9:0.229218829213;CDX1,2,4:0.216474726908;NFE2:0.188971110413;IKZF2:0.188220844099;MAFB:0.172089250482;XBP1:0.151106551876;MEF2{A,B,C,D}:0.142590119228;PAX4:0.141118908807;T:0.118308317972;ATF2:0.116152146898;EP300:0.0953385921783;POU5F1:0.0948109145732;JUN:0.0919721877687;TFAP4:0.0656294285041;CEBPA,B_DDIT3:0.0503868739358;HLF:0.0474202310157;PITX1..3:0.0439912489928;ZNF148:0.0419512262487;ALX1:0.0279708131785;FOX{I1,J2}:0.00508496125042;NKX2-2,8:-0.000379986178322;CUX2:-0.0302221295155;SNAI1..3:-0.0510660492921;TOPORS:-0.0545255328624;SOX5:-0.0868325775202;ESR1:-0.0950718206986;EVI1:-0.0963205559694;EGR1..3:-0.100839049806;CDC5L:-0.13044401703;ESRRA:-0.141865771721;GATA4:-0.147146399873;STAT5{A,B}:-0.160233214037;GATA6:-0.17822760586;TAL1_TCF{3,4,12}:-0.181424667771;RBPJ:-0.193390958645;TEF:-0.210379618961;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.219281682176;HAND1,2:-0.24152114603;NR5A1,2:-0.242361637043;SOX2:-0.251875300332;ZNF238:-0.252192568255;NFATC1..3:-0.274747785422;TFAP2{A,C}:-0.291751012725;ALX4:-0.301291602195;STAT1,3:-0.331826560545;ZFP161:-0.335214474273;GLI1..3:-0.33677935804;SOX{8,9,10}:-0.336869393088;NFY{A,B,C}:-0.345972602063;HNF4A_NR2F1,2:-0.366085373516;PRRX1,2:-0.388600303451;POU1F1:-0.389586747843;DBP:-0.393039268641;ARID5B:-0.428493625059;YY1:-0.443471265477;HNF1A:-0.447448818961;PAX8:-0.463940143183;MED-1{core}:-0.472956295865;NFE2L2:-0.473675785623;STAT2,4,6:-0.500451410462;bHLH_family:-0.514406783646;NKX2-3_NKX2-5:-0.526622542207;POU3F1..4:-0.549566684004;LHX3,4:-0.550515834317;E2F1..5:-0.568200878953;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.590605796192;PPARG:-0.60554860216;NKX3-1:-0.613205631647;AR:-0.615564091535;SOX17:-0.623925925502;RXR{A,B,G}:-0.64235019668;AHR_ARNT_ARNT2:-0.644586975618;REST:-0.645444204811;MZF1:-0.654589809414;NRF1:-0.656641122792;HOX{A5,B5}:-0.679759693179;PATZ1:-0.709514308888;ZNF384:-0.724438031122;SRF:-0.728580187004;ZNF143:-0.745963844023;PRDM1:-0.772055924083;SP1:-0.773474472092;MTE{core}:-0.783108060107;HOX{A4,D4}:-0.784269499883;HSF1,2:-0.7988099112;HES1:-0.801240167424;TFCP2:-0.817628344983;POU6F1:-0.855447753886;HOX{A6,A7,B6,B7}:-0.871789313679;TBP:-0.875765372326;MAZ:-0.88191355337;RREB1:-0.911574219091;LEF1_TCF7_TCF7L1,2:-0.912562284868;ZBTB6:-0.917470090182;RFX1:-0.919876324234;MYBL2:-0.936983923983;NR1H4:-0.942338344283;NFE2L1:-0.961161158424;HIC1:-0.979751146507;SPZ1:-1.02400253658;NFIX:-1.03896718381;TFAP2B:-1.05859383371;MTF1:-1.09096982483;NKX3-2:-1.09586822691;GTF2A1,2:-1.09728135771;TP53:-1.11499253401;PAX5:-1.18595246675;NKX2-1,4:-1.19239194166;ONECUT1,2:-1.23469210373;NR3C1:-1.23902541769;GZF1:-1.24163043376;VSX1,2:-1.25415652664;ADNP_IRX_SIX_ZHX:-1.26287663915;GFI1:-1.29298612795;TEAD1:-1.42271706795;GCM1,2:-1.42323150152;ZNF423:-1.43454428518;UFEwm:-1.45931027949;TBX4,5:-1.48923312635;TFDP1:-1.49025316483;EBF1:-1.50109371565;GFI1B:-1.55699280433;XCPE1{core}:-1.56131407293;GTF2I:-1.56995988281;PBX1:-1.6319686754;ZIC1..3:-1.6482229389;IKZF1:-1.66426045745;FOXM1:-1.70335368566;KLF4:-1.96706258211;TLX1..3_NFIC{dimer}:-2.09613758378;PAX1,9:-2.39827189994 | |top_motifs=NANOG{mouse}:2.59293666462;AIRE:2.11649186387;DMAP1_NCOR{1,2}_SMARC:1.98223898767;CREB1:1.86680356647;SPI1:1.83806444278;NFKB1_REL_RELA:1.83101082671;ATF5_CREB3:1.7227099311;LMO2:1.65446974895;FOXD3:1.64999042637;PAX2:1.62271947354;RUNX1..3:1.61654226052;SPIB:1.52165480371;NFIL3:1.4321359863;TGIF1:1.38557910372;RFX2..5_RFXANK_RFXAP:1.36680007886;ELF1,2,4:1.35569803058;ETS1,2:1.32741005656;ATF4:1.31369779961;FOXN1:1.30185852288;PAX6:1.26052997707;EN1,2:1.18073867565;PAX3,7:1.0887795343;FOX{F1,F2,J1}:0.9941953554;NANOG:0.946786754164;FOXP1:0.934836570403;BREu{core}:0.893076492554;BPTF:0.887469108931;MYFfamily:0.833542923053;FOXQ1:0.815475296076;IRF1,2:0.787104938434;FOXL1:0.773870010768;NHLH1,2:0.746103898795;HMX1:0.735707261405;FOXP3:0.718978216789;RORA:0.712380032544;HIF1A:0.704020910943;TLX2:0.702293455124;CRX:0.692494711833;ZBTB16:0.673628163211;POU2F1..3:0.673382068177;MYB:0.64453026773;ATF6:0.630285616616;NKX6-1,2:0.599275008577;FOXO1,3,4:0.531027354386;MYOD1:0.527813038006;PDX1:0.460197521403;SREBF1,2:0.450776927804;HOXA9_MEIS1:0.439889121369;IRF7:0.425248040245;RXRA_VDR{dimer}:0.391444566259;BACH2:0.389598237525;OCT4_SOX2{dimer}:0.387404634733;FOS_FOS{B,L1}_JUN{B,D}:0.3870731574;FOXA2:0.376216028299;ZEB1:0.372997103145;HBP1_HMGB_SSRP1_UBTF:0.368837072146;ELK1,4_GABP{A,B1}:0.331487293754;FOX{D1,D2}:0.294614906206;HMGA1,2:0.278842588491;FOSL2:0.269129502797;NR6A1:0.243522590263;SMAD1..7,9:0.229218829213;CDX1,2,4:0.216474726908;NFE2:0.188971110413;IKZF2:0.188220844099;MAFB:0.172089250482;XBP1:0.151106551876;MEF2{A,B,C,D}:0.142590119228;PAX4:0.141118908807;T:0.118308317972;ATF2:0.116152146898;EP300:0.0953385921783;POU5F1:0.0948109145732;JUN:0.0919721877687;TFAP4:0.0656294285041;CEBPA,B_DDIT3:0.0503868739358;HLF:0.0474202310157;PITX1..3:0.0439912489928;ZNF148:0.0419512262487;ALX1:0.0279708131785;FOX{I1,J2}:0.00508496125042;NKX2-2,8:-0.000379986178322;CUX2:-0.0302221295155;SNAI1..3:-0.0510660492921;TOPORS:-0.0545255328624;SOX5:-0.0868325775202;ESR1:-0.0950718206986;EVI1:-0.0963205559694;EGR1..3:-0.100839049806;CDC5L:-0.13044401703;ESRRA:-0.141865771721;GATA4:-0.147146399873;STAT5{A,B}:-0.160233214037;GATA6:-0.17822760586;TAL1_TCF{3,4,12}:-0.181424667771;RBPJ:-0.193390958645;TEF:-0.210379618961;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.219281682176;HAND1,2:-0.24152114603;NR5A1,2:-0.242361637043;SOX2:-0.251875300332;ZNF238:-0.252192568255;NFATC1..3:-0.274747785422;TFAP2{A,C}:-0.291751012725;ALX4:-0.301291602195;STAT1,3:-0.331826560545;ZFP161:-0.335214474273;GLI1..3:-0.33677935804;SOX{8,9,10}:-0.336869393088;NFY{A,B,C}:-0.345972602063;HNF4A_NR2F1,2:-0.366085373516;PRRX1,2:-0.388600303451;POU1F1:-0.389586747843;DBP:-0.393039268641;ARID5B:-0.428493625059;YY1:-0.443471265477;HNF1A:-0.447448818961;PAX8:-0.463940143183;MED-1{core}:-0.472956295865;NFE2L2:-0.473675785623;STAT2,4,6:-0.500451410462;bHLH_family:-0.514406783646;NKX2-3_NKX2-5:-0.526622542207;POU3F1..4:-0.549566684004;LHX3,4:-0.550515834317;E2F1..5:-0.568200878953;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.590605796192;PPARG:-0.60554860216;NKX3-1:-0.613205631647;AR:-0.615564091535;SOX17:-0.623925925502;RXR{A,B,G}:-0.64235019668;AHR_ARNT_ARNT2:-0.644586975618;REST:-0.645444204811;MZF1:-0.654589809414;NRF1:-0.656641122792;HOX{A5,B5}:-0.679759693179;PATZ1:-0.709514308888;ZNF384:-0.724438031122;SRF:-0.728580187004;ZNF143:-0.745963844023;PRDM1:-0.772055924083;SP1:-0.773474472092;MTE{core}:-0.783108060107;HOX{A4,D4}:-0.784269499883;HSF1,2:-0.7988099112;HES1:-0.801240167424;TFCP2:-0.817628344983;POU6F1:-0.855447753886;HOX{A6,A7,B6,B7}:-0.871789313679;TBP:-0.875765372326;MAZ:-0.88191355337;RREB1:-0.911574219091;LEF1_TCF7_TCF7L1,2:-0.912562284868;ZBTB6:-0.917470090182;RFX1:-0.919876324234;MYBL2:-0.936983923983;NR1H4:-0.942338344283;NFE2L1:-0.961161158424;HIC1:-0.979751146507;SPZ1:-1.02400253658;NFIX:-1.03896718381;TFAP2B:-1.05859383371;MTF1:-1.09096982483;NKX3-2:-1.09586822691;GTF2A1,2:-1.09728135771;TP53:-1.11499253401;PAX5:-1.18595246675;NKX2-1,4:-1.19239194166;ONECUT1,2:-1.23469210373;NR3C1:-1.23902541769;GZF1:-1.24163043376;VSX1,2:-1.25415652664;ADNP_IRX_SIX_ZHX:-1.26287663915;GFI1:-1.29298612795;TEAD1:-1.42271706795;GCM1,2:-1.42323150152;ZNF423:-1.43454428518;UFEwm:-1.45931027949;TBX4,5:-1.48923312635;TFDP1:-1.49025316483;EBF1:-1.50109371565;GFI1B:-1.55699280433;XCPE1{core}:-1.56131407293;GTF2I:-1.56995988281;PBX1:-1.6319686754;ZIC1..3:-1.6482229389;IKZF1:-1.66426045745;FOXM1:-1.70335368566;KLF4:-1.96706258211;TLX1..3_NFIC{dimer}:-2.09613758378;PAX1,9:-2.39827189994 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11228-116C4;search_select_hide=table117:FF:11228-116C4 | |||
}} | }} | ||
Latest revision as of 16:26, 3 June 2020
| Name: | Dendritic Cells - plasmacytoid, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10857 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10857
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10857
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.322 |
| 10 | 10 | 0.0136 |
| 100 | 100 | 0.954 |
| 101 | 101 | 0.493 |
| 102 | 102 | 0.557 |
| 103 | 103 | 0.228 |
| 104 | 104 | 0.366 |
| 105 | 105 | 0.342 |
| 106 | 106 | 0.00918 |
| 107 | 107 | 0.778 |
| 108 | 108 | 0.17 |
| 109 | 109 | 0.191 |
| 11 | 11 | 0.278 |
| 110 | 110 | 0.697 |
| 111 | 111 | 0.135 |
| 112 | 112 | 0.763 |
| 113 | 113 | 0.582 |
| 114 | 114 | 0.121 |
| 115 | 115 | 0.505 |
| 116 | 116 | 0.877 |
| 117 | 117 | 0.00627 |
| 118 | 118 | 0.239 |
| 119 | 119 | 0.173 |
| 12 | 12 | 0.414 |
| 120 | 120 | 0.892 |
| 121 | 121 | 0.423 |
| 122 | 122 | 0.186 |
| 123 | 123 | 0.00319 |
| 124 | 124 | 0.207 |
| 125 | 125 | 0.0627 |
| 126 | 126 | 0.483 |
| 127 | 127 | 0.603 |
| 128 | 128 | 0.13 |
| 129 | 129 | 0.956 |
| 13 | 13 | 0.066 |
| 130 | 130 | 0.949 |
| 131 | 131 | 0.969 |
| 132 | 132 | 0.0561 |
| 133 | 133 | 0.341 |
| 134 | 134 | 0.455 |
| 135 | 135 | 0.916 |
| 136 | 136 | 0.547 |
| 137 | 137 | 0.00166 |
| 138 | 138 | 0.642 |
| 139 | 139 | 0.0381 |
| 14 | 14 | 0.192 |
| 140 | 140 | 0.996 |
| 141 | 141 | 0.421 |
| 142 | 142 | 0.348 |
| 143 | 143 | 0.011 |
| 144 | 144 | 0.817 |
| 145 | 145 | 0.754 |
| 146 | 146 | 0.776 |
| 147 | 147 | 0.148 |
| 148 | 148 | 0.024 |
| 149 | 149 | 0.499 |
| 15 | 15 | 0.0723 |
| 150 | 150 | 0.586 |
| 151 | 151 | 0.274 |
| 152 | 152 | 0.994 |
| 153 | 153 | 0.454 |
| 154 | 154 | 0.458 |
| 155 | 155 | 0.0703 |
| 156 | 156 | 0.921 |
| 157 | 157 | 0.745 |
| 158 | 158 | 0.163 |
| 159 | 159 | 0.231 |
| 16 | 16 | 0.738 |
| 160 | 160 | 0.681 |
| 161 | 161 | 0.744 |
| 162 | 162 | 0.647 |
| 163 | 163 | 0.672 |
| 164 | 164 | 0.233 |
| 165 | 165 | 0.215 |
| 166 | 166 | 0.331 |
| 167 | 167 | 0.177 |
| 168 | 168 | 0.734 |
| 169 | 169 | 0.951 |
| 17 | 17 | 0.915 |
| 18 | 18 | 0.636 |
| 19 | 19 | 0.381 |
| 2 | 2 | 0.491 |
| 20 | 20 | 0.911 |
| 21 | 21 | 0.847 |
| 22 | 22 | 0.999 |
| 23 | 23 | 0.468 |
| 24 | 24 | 0.371 |
| 25 | 25 | 0.198 |
| 26 | 26 | 0.349 |
| 27 | 27 | 0.548 |
| 28 | 28 | 0.408 |
| 29 | 29 | 0.0202 |
| 3 | 3 | 0.133 |
| 30 | 30 | 0.141 |
| 31 | 31 | 0.736 |
| 32 | 32 | 0.042 |
| 33 | 33 | 0.206 |
| 34 | 34 | 0.966 |
| 35 | 35 | 0.0475 |
| 36 | 36 | 0.128 |
| 37 | 37 | 0.095 |
| 38 | 38 | 0.528 |
| 39 | 39 | 0.722 |
| 4 | 4 | 0.421 |
| 40 | 40 | 0.674 |
| 41 | 41 | 0.05 |
| 42 | 42 | 0.0813 |
| 43 | 43 | 0.104 |
| 44 | 44 | 0.978 |
| 45 | 45 | 0.533 |
| 46 | 46 | 0.379 |
| 47 | 47 | 0.551 |
| 48 | 48 | 0.687 |
| 49 | 49 | 0.105 |
| 5 | 5 | 0.476 |
| 50 | 50 | 0.753 |
| 51 | 51 | 0.382 |
| 52 | 52 | 0.586 |
| 53 | 53 | 0.32 |
| 54 | 54 | 0.83 |
| 55 | 55 | 0.604 |
| 56 | 56 | 0.513 |
| 57 | 57 | 0.586 |
| 58 | 58 | 0.0526 |
| 59 | 59 | 0.888 |
| 6 | 6 | 0.563 |
| 60 | 60 | 0.19 |
| 61 | 61 | 0.0739 |
| 62 | 62 | 0.0277 |
| 63 | 63 | 0.65 |
| 64 | 64 | 0.463 |
| 65 | 65 | 0.671 |
| 66 | 66 | 0.419 |
| 67 | 67 | 0.291 |
| 68 | 68 | 0.367 |
| 69 | 69 | 0.718 |
| 7 | 7 | 0.175 |
| 70 | 70 | 0.0282 |
| 71 | 71 | 0.0631 |
| 72 | 72 | 0.229 |
| 73 | 73 | 0.553 |
| 74 | 74 | 0.252 |
| 75 | 75 | 0.0773 |
| 76 | 76 | 0.324 |
| 77 | 77 | 0.719 |
| 78 | 78 | 0.0362 |
| 79 | 79 | 0.937 |
| 8 | 8 | 0.753 |
| 80 | 80 | 0.121 |
| 81 | 81 | 0.315 |
| 82 | 82 | 0.242 |
| 83 | 83 | 0.284 |
| 84 | 84 | 0.033 |
| 85 | 85 | 0.221 |
| 86 | 86 | 0.0643 |
| 87 | 87 | 0.121 |
| 88 | 88 | 0.45 |
| 89 | 89 | 0.473 |
| 9 | 9 | 0.692 |
| 90 | 90 | 0.0691 |
| 91 | 91 | 0.842 |
| 92 | 92 | 0.526 |
| 93 | 93 | 0.508 |
| 94 | 94 | 0.0937 |
| 95 | 95 | 0.153 |
| 96 | 96 | 0.923 |
| 97 | 97 | 0.936 |
| 98 | 98 | 0.228 |
| 99 | 99 | 6.13711e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10857
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000044 human monocyte immature derived dendritic cell sample
FF:0000045 human plasmacytoid dendritic cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000840 (immature conventional dendritic cell)
0000784 (plasmacytoid dendritic cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000044 (human monocyte immature derived dendritic cell sample)
0000045 (human plasmacytoid dendritic cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
