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{{f5samples
{{f5samples
|id=FF:11304-117B8
|DRA_sample_Accession=CAGE@SAMD00005996
|name=Fibroblast - Periodontal Ligament, donor5 (PL30)
|accession_numbers=CAGE;DRX008278;DRR009150;DRZ000575;DRZ001960;DRZ011925;DRZ013310
|sample_id=11304
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
|rna_tube_id=117B8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
|rna_box=117
|rna_position=B8
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=N/A
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=40 years old adult
|sample_tissue=periodontal ligament
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=40
|sample_ethnicity=A
|rna_rin=9.7
|rna_od260/230=0.87
|rna_od260/280=2.056666667
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=9.67846
|rna_concentration=0.44
|sample_note=
|profile_hcage=CNhs11953,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002556
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0001758,UBERON:0002384,UBERON:0003672
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.90!77.54!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.84!87.96!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.79!68.35!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.78!79.99!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.59!100.53!OSR1;;chr10:28034739..28034756,-!p1@MKX!1.56!35.55!MKX;;chr1:170633262..170633285,+!p3@PRRX1!1.46!31.87!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.43!128.42!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.43!70.49!TWIST1;;chr6:1389789..1389821,+!p1@FOXF2!1.41!33.71!FOXF2;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.19!SIX1;;chr5:72744594..72744609,-!p1@FOXD1!1.37!99.00!FOXD1;;chr6:45296048..45296082,+!p1@RUNX2!1.35!24.21!RUNX2;;chr4:4861385..4861398,+!p1@MSX1!1.29!54.55!MSX1;;chr2:200322654..200322707,-!p2@SATB2!1.26!25.13!SATB2;;chr16:86544113..86544145,+!p1@FOXF1!1.26!21.45!FOXF1;;chr15:57511609..57511651,+!p2@TCF12!1.24!27.28!TCF12;;chr11:46299539..46299620,+!p2@CREB3L1!1.22!26.36!CREB3L1;;chr5:321810..321877,+!p1@AHRR!1.21!47.81!AHRR;;chr1:170632959..170632987,+!p4@PRRX1!1.20!16.24!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.20!15.02!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.18!45.36!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.15!13.18!LHX8;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.24!TFAP2C;;chr1:75600067..75600094,+!p2@LHX8!1.14!12.87!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.12!30.04!FOXC2;;chr11:65686802..65686818,+!p6@DRAP1!1.10!20.23!DRAP1;;chr12:80085061..80085119,-!p6@PAWR!1.05!16.24!PAWR;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.05!11.03!GLIS1;;chr1:170632477..170632506,+!p6@PRRX1!1.02!9.50!PRRX1;;chr8:60031934..60031986,-!p6@TOX!1.02!9.50!TOX;;chr11:65686732..65686756,+!p2@DRAP1!1.00!38.62!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.99!22.37!TWIST1;;chr10:131762504..131762555,-!p1@EBF3!0.98!8.58!EBF3;;chr11:65687362..65687436,+!p3@DRAP1!0.97!38.62!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.97!10.73!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.96!14.10!TWIST2;;chr14:24837368..24837401,+!p1@NFATC4!0.95!19.00!NFATC4;;chr14:37131058..37131139,+!p1@PAX9!0.95!7.97!PAX9;;chr2:172950227..172950249,+!p2@DLX1!0.95!7.97!DLX1;;chr19:47523058..47523114,+!p1@NPAS1!0.94!7.66!NPAS1;;chr13:45151259..45151326,-!p2@TSC22D1!0.92!45.67!TSC22D1;;chr1:170632647..170632659,+!p17@PRRX1!0.92!7.36!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.92!7.36!DLX1;;chr10:28035133..28035148,-!p3@MKX!0.91!7.05!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.89!6.74!TSC22D1;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.58!IRX3;;chr11:65687158..65687216,+!p4@DRAP1!0.87!38.62!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.87!20.84!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.44!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.44!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!0.86!148.65!AEBP1;;chr11:65687243..65687276,+!p8@DRAP1!0.86!8.58!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.85!10.42!FOXD1;;chr5:139492456..139492489,+!p7@PURA!0.85!6.13!PURA;;chr12:53614115..53614154,-!p1@RARG!0.84!33.41!RARG;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.05!FOXD1;;chr9:96717629..96717644,-!p1@BARX1!0.83!5.82!BARX1;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.82!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.11!ZFP106;;chr8:60031682..60031710,-!p2@TOX!0.81!9.19!TOX;;chr6:1389824..1389840,+!p3@FOXF2!0.81!5.52!FOXF2;;chr2:172967242..172967265,-!p2@DLX2!0.81!5.52!DLX2;;chr2:172967276..172967296,-!p3@DLX2!0.81!5.52!DLX2;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.52!ZFY;;chr16:54320158..54320200,-!p5@IRX3!0.80!7.97!IRX3;;chr14:61116168..61116180,-!p2@SIX1!0.80!6.13!SIX1;;chr11:12696071..12696086,+!p3@TEAD1!0.79!7.05!TEAD1;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.21!ZNF668;;chr5:72744562..72744573,-!p3@FOXD1!0.78!6.44!FOXD1;;chr6:19837592..19837621,+!p1@ID4!0.77!32.49!ID4;;chr7:96654026..96654061,-!p2@DLX5!0.77!4.90!DLX5;;chr7:96654133..96654150,-!p1@DLX5!0.77!4.90!DLX5;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.90!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.77!4.90!EN1;;chr2:119605214..119605230,-!p1@EN1!0.77!4.90!EN1;;chr16:54320646..54320672,-!p2@IRX3!0.75!7.36!IRX3;;chr2:45236540..45236577,-!p1@SIX2!0.75!4.60!SIX2;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.07!HMGA2;;chr19:47922750..47922795,-!p1@MEIS3!0.72!7.36!MEIS3;;chr16:54319010..54319041,-!p8@IRX3!0.72!4.29!IRX3;;chr7:1577899..1577943,+!p3@MAFK!0.72!4.29!MAFK;;chr12:53625846..53625861,-!p6@RARG!0.72!4.29!RARG;;chr2:172967323..172967336,-!p4@DLX2!0.72!4.29!DLX2;;chr10:63853436..63853442,+!p4@ARID5B!0.71!24.83!ARID5B;;chr10:63809013..63809041,+!p3@ARID5B!0.70!25.44!ARID5B;;chr11:65686776..65686787,+!p9@DRAP1!0.70!4.90!DRAP1;;chr10:28032421..28032494,-!p2@MKX!0.70!3.98!MKX;;chr1:170633245..170633256,+!p14@PRRX1!0.70!3.98!PRRX1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.69!18.39!LRRFIP2;;chr11:65667884..65667895,-!p2@FOSL1!0.69!16.86!FOSL1;;chr16:54320101..54320125,-!p4@IRX3!0.69!5.82!IRX3;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.74!PAWR;;chr10:63809106..63809127,+!p1@ARID5B!0.67!57.93!ARID5B;;chr2:172967621..172967637,-!p1@DLX2!0.67!11.03!DLX2;;chr5:139487608..139487663,+!p3@PURA!0.67!8.58!PURA;;chr14:37132241..37132304,+!p3@PAX9!0.67!3.68!PAX9;;chr16:54320322..54320343,-!p7@IRX3!0.67!3.68!IRX3;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.37!DRAP1;;chr1:200379104..200379128,-!p2@ZNF281!0.64!9.19!ZNF281;;chr5:174151553..174151610,+!p1@MSX2!0.64!6.13!MSX2;;chr6:1389989..1390019,+!p2@FOXF2!0.64!3.37!FOXF2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.64!3.37!RUNX1T1;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.37!PRRX1;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.37!FOXC2;;chr2:45236579..45236596,-!p2@SIX2!0.64!3.37!SIX2;;chr6:45390025..45390076,+!p2@RUNX2!0.63!8.89!RUNX2;;chr8:72756667..72756736,-!p2@MSC!0.63!5.52!MSC;;chr12:66218255..66218304,+!p3@HMGA2!0.62!9.81!HMGA2;;chr2:200323414..200323455,-!p1@SATB2!0.62!7.66!SATB2;;chr5:134369905..134369972,-!p1@PITX1!0.62!5.21!PITX1;;chr7:44143997..44144008,+!p3@AEBP1!0.62!4.29!AEBP1;;chr7:17369649..17369664,+!p4@AHR!0.62!3.98!AHR;;chr14:73360799..73360817,-!p1@DPF3!0.61!12.26!DPF3;;chr5:158526459..158526481,-!p2@EBF1!0.61!4.29!EBF1;;chr12:80085120..80085156,-!p14@PAWR!0.61!3.06!PAWR;;chr1:170632115..170632136,+!p9@PRRX1!0.61!3.06!PRRX1;;chr2:102091566..102091581,-!p1@RFX8!0.61!3.06!RFX8;;chr16:54964740..54964789,+!p1@IRX5!0.60!4.60!IRX5;;chr2:46602901..46602926,+!p7@EPAS1!0.60!4.29!EPAS1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.61!JDP2;;chr11:65687882..65687902,+!p10@DRAP1!0.59!4.29!DRAP1;;chr3:37216069..37216075,-!p4@LRRFIP2!0.59!3.98!LRRFIP2;;chr6:34204921..34204939,+!p3@HMGA1!0.58!105.43!HMGA1;;chr2:145275162..145275202,-!p2@ZEB2!0.58!19.92!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.58!7.97!EBF1;;chr19:13134457..13134462,+!p5@NFIX!0.58!5.52!NFIX;;chr6:28321909..28321965,-!p3@ZNF323!0.58!2.76!ZNF323;;chrY:21906761..21906810,-!p2@KDM5D!0.58!2.76!KDM5D;;chr1:40105299..40105326,-!p1@HEYL!0.58!2.76!HEYL;;chr7:44143978..44143989,+!p2@AEBP1!0.57!5.52!AEBP1;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.90!FOXQ1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.76!MXD3;;chr13:74708475..74708499,-!p5@KLF12!0.56!7.05!KLF12;;chr8:49833978..49833996,-!p1@SNAI2!0.55!66.81!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.55!19.92!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.55!7.97!RARG;;chr19:13136241..13136258,+!p7@NFIX!0.55!3.68!NFIX;;chr2:191878874..191878938,-!p1@STAT1!0.54!170.10!STAT1;;chr3:178789522..178789564,-!p2@ZMAT3!0.54!22.99!ZMAT3;;chr12:66218212..66218244,+!p5@HMGA2!0.54!3.98!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.54!3.98!MSC;;chr8:25902876..25902936,-!p1@EBF2!0.54!2.45!EBF2;;chr2:46612891..46612907,+!p10@EPAS1!0.54!2.45!EPAS1;;chr1:170632723..170632739,+!p8@PRRX1!0.54!2.45!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.54!2.45!FOXS1;;chr10:28034772..28034783,-!p4@MKX!0.54!2.45!MKX;;chr10:28035112..28035130,-!p5@MKX!0.54!2.45!MKX;;chr11:46333934..46333963,+!p5@CREB3L1!0.54!2.45!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.45!CREB3L1;;chr17:59477197..59477212,+!p2@TBX2!0.52!4.60!TBX2;;chr12:80085255..80085284,-!p9@PAWR!0.52!3.68!PAWR;;chr10:63809077..63809089,+!p5@ARID5B!0.51!5.82!ARID5B;;chr17:20492136..20492165,+!p1@MEIS3P2!0.51!3.98!MEIS3P2;;chr17:46127997..46128015,+!p5@NFE2L1!0.51!3.37!NFE2L1;;chr2:191878812..191878823,-!p2@STAT1!0.51!3.06!STAT1;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.57!TSC22D2;;chr3:141121847..141121868,+!p5@ZBTB38!0.50!3.68!ZBTB38;;chr16:86601052..86601066,+!p4@FOXC2!0.50!2.15!FOXC2;;chr5:174151612..174151633,+!p2@MSX2!0.50!2.15!MSX2;;chr6:1389871..1389876,+!p4@FOXF2!0.50!2.15!FOXF2;;chr6:45296028..45296034,+!p24@RUNX2!0.50!2.15!RUNX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.50!2.15!RUNX1T1;;chr11:46299443..46299459,+!p4@CREB3L1!0.50!2.15!CREB3L1;;chr1:170632683..170632696,+!p12@PRRX1!0.50!2.15!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.50!2.15!PRRX1;;chr9:96717678..96717689,-!p2@BARX1!0.50!2.15!BARX1;;chr12:48298785..48298828,-!p1@VDR!0.49!14.40!VDR;;chr3:52001426..52001447,-!p3@PCBP4!0.49!7.36!PCBP4;;chr8:60031762..60031803,-!p3@TOX!0.49!3.37!TOX;;chr17:59477275..59477286,+!p3@TBX2!0.49!3.06!TBX2;;chr2:46524537..46524553,+!p1@EPAS1!0.48!271.55!EPAS1;;chr12:80084303..80084332,-!p1@PAWR!0.48!15.63!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.48!10.42!ZBTB38;;chr16:54320675..54320715,-!p1@IRX3!0.48!5.21!IRX3;;chr8:60031809..60031835,-!p4@TOX!0.48!2.76!TOX;;chr10:31607702..31607755,+!p3@ZEB1!0.48!2.45!ZEB1;;chr12:80084737..80084763,-!p3@PAWR!0.47!9.50!PAWR;;chr12:53614155..53614187,-!p3@RARG!0.47!4.60!RARG;;chr11:12696002..12696022,+!p2@TEAD1!0.46!5.82!TEAD1;;chr3:52001448..52001478,-!p2@PCBP4!0.45!34.94!PCBP4;;chr13:45151403..45151433,-!p5@TSC22D1!0.45!4.90!TSC22D1;;chr12:48298765..48298783,-!p2@VDR!0.45!4.60!VDR;;chr12:53848549..53848582,+!p9@PCBP2!0.45!3.06!PCBP2;;chr13:74708246..74708264,-!p8@KLF12!0.45!2.15!KLF12;;chr8:72756637..72756664,-!p3@MSC!0.45!2.15!MSC;;chr10:28032548..28032559,-!p7@MKX!0.45!1.84!MKX;;chr10:28035155..28035166,-!p8@MKX!0.45!1.84!MKX;;chr15:57511589..57511608,+!p4@TCF12!0.45!1.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IS2;;chr22:30163056..30163067,-!p3@ZMAT5!0.25!1.23!ZMAT5;;chr19:56152361..56152434,+!p1@ZNF580!0.24!41.07!ZNF580;;chr2:208030647..208030689,-!p1@KLF7!0.24!12.57!KLF7;;chr10:44144292..44144338,-!p1@ZNF32!0.24!9.50!ZNF32;;chr8:124286775..124286860,-!p2@ZHX1!0.24!6.13!ZHX1;;chr5:137804484..137804498,+!p2@EGR1!0.24!5.52!EGR1;;chr16:79634624..79634642,-!p1@MAF!0.24!5.52!MAF;;chr12:108154925..108154945,-!p2@PRDM4!0.24!3.06!PRDM4;;chr12:53848505..53848532,+!p4@PCBP2!0.24!2.76!PCBP2;;chr15:61521417..61521460,-!p2@RORA!0.24!2.76!RORA;;chr17:7382834..7382855,-!p6@ZBTB4!0.24!1.84!ZBTB4;;chr4:81104895..81104920,+!p2@PRDM8!0.24!1.53!PRDM8;;chr21:36231861..36231877,-!p12@RUNX1!0.24!1.23!RUNX1;;chr8:72756213..72756243,-!p5@MSC!0.24!1.23!MSC;;chr11:46299186..46299195,+!p3@CREB3L1!0.24!0.92!CREB3L1;;chr18:46475696..46475713,-!p1@SMAD7!0.24!0.92!SMAD7;;chr8:48650715..48650735,-!p1@CEBPD!0.23!197.99!CEBPD;;chr3:150126065..150126097,+!p1@TSC22D2!0.23!12.87!TSC22D2;;chr16:29819403..29819442,+!p5@MAZ!0.23!11.95!MAZ;;chr16:71496112..71496160,-!p1@ZNF23!0.23!6.44!ZNF23;;chr17:5095126..5095169,-!p1@ZNF594!0.23!5.82!ZNF594;;chr9:137218341..137218361,+!p2@RXRA!0.23!5.52!RXRA;;chr1:67395982..67396015,+!p4@MIER1!0.23!3.37!MIER1;;chr6:144289132..144289134,-!p3@PLAGL1!0.23!2.76!PLAGL1;;chr11:8102749..8102769,+!p2@TUB!0.23!2.15!TUB;;chr12:52430894..52430952,+!p3@NR4A1!0.23!2.15!NR4A1;;chr1:221053049..221053075,+!p3@HLX!0.23!1.84!HLX;;chr18:32924431..32924440,-!p2@ZNF24!0.23!1.84!ZNF24;;chr7:137686763..137686784,-!p5@CREB3L2!0.23!1.84!CREB3L2;;chr10:3819310..3819325,-!p5@KLF6!0.23!1.23!KLF6;;chr9:2017159..2017186,+!p12@SMARCA2!0.23!1.23!SMARCA2;;chr9:4300004..4300015,-!p6@GLIS3!0.23!0.92!GLIS3;;chr7:44143738..44143760,+!p4@AEBP1!0.23!0.92!AEBP1;;chr1:47903709..47903764,+!p1@BC169308!0.23!0.92!FOXD2;;chr12:80083689..80083706,-!p16@PAWR!0.23!0.92!PAWR;;chr19:20844356..20844365,-!p3@ZNF626!0.23!0.92!ZNF626;;chr22:30162924..30163005,-!p1@ZMAT5!0.22!18.08!ZMAT5;;chr10:3827371..3827386,-!p2@KLF6!0.22!11.95!KLF6;;chr22:41697497..41697515,+!p2@ZC3H7B!0.22!3.37!ZC3H7B;;chr22:42229210..42229229,+!p3@SREBF2!0.22!2.76!SREBF2;;chr3:23986748..23986761,+!p3@NR1D2!0.22!2.45!NR1D2;;chr3:40566371..40566400,+!p2@ZNF621!0.22!2.45!ZNF621;;chr9:130952713..130952727,-!p3@CIZ1!0.22!1.53!CIZ1;;chr12:66218378..66218401,+!p6@HMGA2!0.22!1.53!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.22!1.53!ZFP64;;chr1:244219775..244219893,+!p2@ZNF238!0.22!1.23!ZNF238;;chr4:87967906..87967931,+!p15@AFF1!0.22!1.23!AFF1;;chr11:6947647..6947698,+!p2@ZNF215!0.22!1.23!ZNF215;;chr12:11802909..11802920,+!p7@ETV6!0.22!1.23!ETV6;;chr13:74708269..74708291,-!p7@KLF12!0.22!1.23!KLF12;;chr11:19263160..19263176,-!p1@E2F8!0.22!0.92!E2F8;;chr11:47237922..47237964,+!p4@DDB2!0.22!0.92!DDB2;;chr1:23857325..23857416,-!p2@E2F2!0.22!0.92!E2F2;;chr19:12175573..12175584,+!p3@ZNF844!0.22!0.92!ZNF844;;chrX:47509928..47509990,-!p1@ELK1!0.21!44.75!ELK1;;chr2:70314849..70314860,+!p3@PCBP1!0.21!21.45!PCBP1;;chr5:132299210..132299228,-!p3@AFF4!0.21!16.55!AFF4;;chr12:124873357..124873401,-!p1@NCOR2!0.21!16.24!NCOR2;;chr2:217277169..217277266,+!p1@SMARCAL1!0.21!14.71!SMARCAL1;;chr12:498695..498748,-!p2@KDM5A!0.21!8.89!KDM5A;;chr19:56152437..56152467,+!p3@ZNF580!0.21!6.74!ZNF580;;chr13:41635285..41635356,-!p3@ELF1!0.21!5.21!ELF1;;chr2:208394817..208394834,+!p3@CREB1!0.21!5.21!CREB1;;chr2:217277480..217277505,+!p2@SMARCAL1!0.21!4.29!SMARCAL1;;chr22:46546406..46546440,+!p1@PPARA!0.21!2.76!PPARA;;chr19:58951496..58951539,-!p1@ZNF132!0.21!2.76!ZNF132;;chr15:66994561..66994597,+!p2@SMAD6!0.21!2.76!SMAD6;;chr1:158979851..158979865,+!p5@IFI16!0.21!2.45!IFI16;;chr3:114343826..114343869,-!p4@ZBTB20!0.21!2.15!ZBTB20;;chr7:148823387..148823440,-!p1@ZNF425!0.21!1.84!ZNF425;;chr8:28243813..28243839,-!p4@ZNF395!0.21!1.84!ZNF395;;chr12:56575310..56575344,-!p3@SMARCC2!0.21!1.53!SMARCC2;;chr1:43148244..43148275,+!p5@YBX1!0.21!1.53!YBX1;;chr21:36260295..36260310,-!p3@RUNX1!0.21!1.53!RUNX1;;chr21:36260343..36260402,-!p6@RUNX1!0.21!1.53!RUNX1;;chr10:77161650..77161661,-!p4@ZNF503!0.21!1.23!ZNF503;;chr12:12764995..12765017,+!p3@CREBL2!0.21!1.23!CREBL2;;chr14:62213827..62213853,+!p6@HIF1A!0.21!1.23!HIF1A;;chr3:23986876..23986885,+!p4@NR1D2!0.21!1.23!NR1D2;;chr22:39916289..39916302,+!p3@ATF4!0.21!0.92!ATF4;;chr8:28243785..28243799,-!p6@ZNF395!0.21!0.92!ZNF395;;chr16:69600181..69600202,+!p5@NFAT5!0.21!0.92!NFAT5;;chr15:31684663..31684717,+!p10@KLF13!0.21!0.61!KLF13;;chr15:67430351..67430366,+!p10@SMAD3!0.21!0.61!SMAD3;;chr15:67430381..67430396,+!p21@SMAD3!0.21!0.61!SMAD3;;chr15:80843484..80843499,+!p5@ARNT2!0.21!0.61!ARNT2;;chr16:54964690..54964703,+!p4@IRX5!0.21!0.61!IRX5;;chr16:54964899..54964914,+!p2@IRX5!0.21!0.61!IRX5;;chr16:79633883..79633892,-!p6@MAF!0.21!0.61!MAF;;chr16:86612320..86612394,+!p1@FOXL1!0.21!0.61!FOXL1;;chr17:7387486..7387497,-!p11@ZBTB4!0.21!0.61!ZBTB4;;chr17:79881433..79881452,-!p6@MAFG!0.21!0.61!MAFG;;chr18:32870122..32870133,-!p2@ZSCAN30!0.21!0.61!ZSCAN30;;chr18:42260840..42260860,+!p2@SETBP1!0.21!0.61!SETBP1;;ch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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor5%2520%2528PL30%2529.CNhs11953.11304-117B8.hg38.nobarcode.ctss.bed.gz
|id=FF:11304-117B8
|is_a=EFO:0002091;;FF:0000067
|is_obsolete=
|library_id=CNhs11953
|library_id_phase_based=2:CNhs11953
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11304
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11304
|name=Fibroblast - Periodontal Ligament, donor5 (PL30)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11953,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_catalog_number=N/A
|rna_concentration=0.44
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=0.87
|rna_od260/280=2.056666667
|rna_position=B8
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_tube_id=117B8
|rna_weight_ug=9.67846
|sample_age=40
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_company=N/A
|sample_description=
|sample_dev_stage=40 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=A
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.11512193839155e-220!GO:0005737;cytoplasm;4.46456709455307e-193!GO:0043226;organelle;1.685153858561e-172!GO:0043229;intracellular organelle;4.2613437361736e-172!GO:0043231;intracellular membrane-bound organelle;4.69733834297179e-166!GO:0043227;membrane-bound organelle;7.66458967125832e-166!GO:0044444;cytoplasmic part;2.19191688912566e-137!GO:0044422;organelle part;9.20663347561843e-132!GO:0044446;intracellular organelle part;2.51665173018541e-130!GO:0032991;macromolecular complex;7.38525787602081e-96!GO:0030529;ribonucleoprotein complex;1.95729027017545e-81!GO:0044238;primary metabolic process;5.28400591120641e-78!GO:0044237;cellular metabolic process;1.14379440831173e-77!GO:0005515;protein binding;2.15852532212722e-75!GO:0043170;macromolecule metabolic process;2.33154374990226e-71!GO:0005739;mitochondrion;9.95358717717815e-70!GO:0043233;organelle lumen;3.16601692318901e-64!GO:0031974;membrane-enclosed lumen;3.16601692318901e-64!GO:0003723;RNA binding;1.0531987054174e-58!GO:0044428;nuclear part;1.82027154426061e-58!GO:0005634;nucleus;2.33157900207274e-55!GO:0005840;ribosome;4.07902000521246e-53!GO:0019538;protein metabolic process;2.56774832627558e-52!GO:0031090;organelle membrane;5.47621376152487e-50!GO:0016043;cellular component organization and biogenesis;1.32114266151868e-49!GO:0043234;protein complex;2.26293578618409e-49!GO:0006412;translation;7.11901986369812e-49!GO:0003735;structural constituent of ribosome;4.9381306852954e-47!GO:0044260;cellular macromolecule metabolic process;9.23030036035383e-47!GO:0044429;mitochondrial part;3.72988951776973e-46!GO:0044267;cellular protein metabolic process;7.36407262894341e-46!GO:0015031;protein transport;6.3307817096108e-45!GO:0033036;macromolecule localization;1.65556074556354e-44!GO:0008104;protein localization;8.07092868737418e-42!GO:0045184;establishment of protein localization;2.19952223435481e-41!GO:0009058;biosynthetic process;6.49155463009607e-41!GO:0033279;ribosomal subunit;1.64961950059585e-40!GO:0044249;cellular biosynthetic process;1.88790547537645e-39!GO:0005829;cytosol;6.22523481608366e-39!GO:0031967;organelle envelope;9.54632626755968e-39!GO:0031975;envelope;1.69553667792581e-38!GO:0006396;RNA processing;1.72692238497988e-38!GO:0009059;macromolecule biosynthetic process;1.27114826852908e-37!GO:0031981;nuclear lumen;5.61394670972865e-35!GO:0046907;intracellular transport;1.21260023238181e-34!GO:0043283;biopolymer metabolic process;6.84541585179993e-34!GO:0043228;non-membrane-bound organelle;4.30784526080831e-31!GO:0043232;intracellular non-membrane-bound organelle;4.30784526080831e-31!GO:0010467;gene expression;4.72444900471765e-31!GO:0016071;mRNA metabolic process;7.04560409994452e-31!GO:0065003;macromolecular complex assembly;2.52386020286043e-30!GO:0006996;organelle organization and biogenesis;3.46685674727344e-30!GO:0005740;mitochondrial envelope;4.73161954444079e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.59886634801961e-29!GO:0006886;intracellular protein transport;1.64259131132944e-29!GO:0008380;RNA splicing;2.18994520307831e-29!GO:0031966;mitochondrial membrane;2.55325310498603e-28!GO:0019866;organelle inner membrane;8.20117588745853e-28!GO:0022607;cellular component assembly;1.83586544221725e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.70190689138869e-27!GO:0006397;mRNA processing;9.39112946788088e-27!GO:0005743;mitochondrial inner membrane;2.8124594635324e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.22807288707031e-26!GO:0006119;oxidative phosphorylation;1.5408837334541e-23!GO:0051641;cellular localization;9.71763522145118e-23!GO:0051649;establishment of cellular localization;9.76329563431971e-23!GO:0044445;cytosolic part;1.57163838580019e-22!GO:0044455;mitochondrial membrane part;9.3224016838454e-22!GO:0005654;nucleoplasm;2.25795817249126e-21!GO:0005681;spliceosome;5.22325990439003e-21!GO:0015935;small ribosomal subunit;5.37432387870193e-21!GO:0006457;protein folding;8.98008601750457e-21!GO:0015934;large ribosomal subunit;1.37055154317933e-20!GO:0005783;endoplasmic reticulum;1.52491408994026e-20!GO:0000166;nucleotide binding;1.09271186950353e-19!GO:0016462;pyrophosphatase activity;1.24438373681472e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.35227173689761e-19!GO:0031980;mitochondrial lumen;1.35227173689761e-19!GO:0005759;mitochondrial matrix;1.35227173689761e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;2.24879091282648e-19!GO:0048770;pigment granule;2.68069302388564e-19!GO:0042470;melanosome;2.68069302388564e-19!GO:0012505;endomembrane system;3.0171764350526e-19!GO:0006259;DNA metabolic process;5.25462016861442e-19!GO:0005746;mitochondrial respiratory chain;1.05657003095525e-18!GO:0017111;nucleoside-triphosphatase activity;1.2724366438578e-18!GO:0044451;nucleoplasm part;1.14684336164912e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.84920403288853e-17!GO:0007049;cell cycle;2.95031041275498e-17!GO:0006512;ubiquitin cycle;3.91119389603362e-17!GO:0044432;endoplasmic reticulum part;4.01138018313537e-17!GO:0051186;cofactor metabolic process;4.53972486462158e-17!GO:0016874;ligase activity;7.97025361912852e-17!GO:0022618;protein-RNA complex assembly;9.32219241854209e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.5682455262197e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.32711792539447e-16!GO:0003954;NADH dehydrogenase activity;4.32711792539447e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.32711792539447e-16!GO:0005794;Golgi apparatus;5.44630335381906e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;7.56583894579988e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.38716853485452e-15!GO:0019941;modification-dependent protein catabolic process;1.48104096613846e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.48104096613846e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.06134322434854e-15!GO:0008134;transcription factor binding;2.25640463202211e-15!GO:0044257;cellular protein catabolic process;2.26961078418679e-15!GO:0006605;protein targeting;2.29427095146593e-15!GO:0005761;mitochondrial ribosome;2.5791930797319e-15!GO:0000313;organellar ribosome;2.5791930797319e-15!GO:0044265;cellular macromolecule catabolic process;3.06310692160215e-15!GO:0043285;biopolymer catabolic process;1.43452758053517e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.46985791675679e-14!GO:0032553;ribonucleotide binding;1.5067665041506e-14!GO:0032555;purine ribonucleotide binding;1.5067665041506e-14!GO:0017076;purine nucleotide binding;1.84428810759459e-14!GO:0051082;unfolded protein binding;1.97201972358643e-14!GO:0044248;cellular catabolic process;2.20751981561707e-14!GO:0008135;translation factor activity, nucleic acid binding;2.39801405276668e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.55811763045008e-14!GO:0005730;nucleolus;2.67876444380539e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.8978757893902e-14!GO:0042773;ATP synthesis coupled electron transport;3.8978757893902e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.01113809627859e-14!GO:0045271;respiratory chain complex I;4.01113809627859e-14!GO:0005747;mitochondrial respiratory chain complex I;4.01113809627859e-14!GO:0048193;Golgi vesicle transport;7.25778648258872e-14!GO:0030163;protein catabolic process;9.52488985309263e-14!GO:0000278;mitotic cell cycle;1.26369376410558e-13!GO:0022402;cell cycle process;1.35945114338322e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.40719763272458e-13!GO:0009057;macromolecule catabolic process;1.85229473433599e-13!GO:0003676;nucleic acid binding;2.37706151775708e-13!GO:0006732;coenzyme metabolic process;3.66507409539163e-13!GO:0043412;biopolymer modification;1.04096606966988e-12!GO:0016192;vesicle-mediated transport;1.20656491865818e-12!GO:0009055;electron carrier activity;2.25563299673189e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.60584030026726e-12!GO:0005793;ER-Golgi intermediate compartment;6.75336851069431e-12!GO:0012501;programmed cell death;8.11971651758502e-12!GO:0005789;endoplasmic reticulum membrane;1.34662321959526e-11!GO:0006464;protein modification process;1.39668727151066e-11!GO:0005524;ATP binding;2.65503560591665e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.85077579515565e-11!GO:0000375;RNA splicing, via transesterification reactions;2.85077579515565e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.85077579515565e-11!GO:0006915;apoptosis;3.11889391646571e-11!GO:0032559;adenyl ribonucleotide binding;5.13667805772864e-11!GO:0003743;translation initiation factor activity;6.14508622289587e-11!GO:0030554;adenyl nucleotide binding;8.33802534219178e-11!GO:0006413;translational initiation;8.45263657701106e-11!GO:0008219;cell death;1.07293492889751e-10!GO:0016265;death;1.07293492889751e-10!GO:0016070;RNA metabolic process;1.09344827918641e-10!GO:0009259;ribonucleotide metabolic process;1.24668387231863e-10!GO:0006974;response to DNA damage stimulus;1.32742301917155e-10!GO:0008639;small protein conjugating enzyme activity;2.87317078752285e-10!GO:0019787;small conjugating protein ligase activity;2.96673967860385e-10!GO:0003712;transcription cofactor activity;3.16819417500189e-10!GO:0043687;post-translational protein modification;3.86977549259763e-10!GO:0042254;ribosome biogenesis and assembly;3.92984050349338e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.53872611723123e-10!GO:0048523;negative regulation of cellular process;5.84813011545637e-10!GO:0004842;ubiquitin-protein ligase activity;6.18553786349301e-10!GO:0005635;nuclear envelope;8.89497044122971e-10!GO:0006446;regulation of translational initiation;9.86451554279483e-10!GO:0006163;purine nucleotide metabolic process;1.01965698111838e-09!GO:0006913;nucleocytoplasmic transport;1.33033619962758e-09!GO:0009150;purine ribonucleotide metabolic process;1.33033619962758e-09!GO:0009141;nucleoside triphosphate metabolic process;1.33762304446145e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.43060753335972e-09!GO:0009260;ribonucleotide biosynthetic process;1.54448476246929e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.76528308252842e-09!GO:0031965;nuclear membrane;1.85000175995092e-09!GO:0042623;ATPase activity, coupled;2.44052092420158e-09!GO:0044453;nuclear membrane part;2.48826422023804e-09!GO:0051169;nuclear transport;2.56831524612136e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.94129066435231e-09!GO:0022403;cell cycle phase;3.56970855805973e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.63432089539653e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.63432089539653e-09!GO:0000087;M phase of mitotic cell cycle;3.96271447627185e-09!GO:0006164;purine nucleotide biosynthetic process;4.02658563553461e-09!GO:0051726;regulation of cell cycle;4.91280607587305e-09!GO:0007067;mitosis;4.91280607587305e-09!GO:0009060;aerobic respiration;4.91280607587305e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.02763703671099e-09!GO:0016887;ATPase activity;5.05615119383125e-09!GO:0006461;protein complex assembly;5.07827814793601e-09!GO:0000074;regulation of progression through cell cycle;5.24021343753696e-09!GO:0008565;protein transporter activity;5.34259880287957e-09!GO:0003924;GTPase activity;6.56893749734727e-09!GO:0016881;acid-amino acid ligase activity;7.03594844432079e-09!GO:0005694;chromosome;7.29427211657886e-09!GO:0045333;cellular respiration;9.85062736072392e-09!GO:0015986;ATP synthesis coupled proton transport;9.88725621494163e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.88725621494163e-09!GO:0016491;oxidoreductase activity;9.9671370036299e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.05868760718804e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.05868760718804e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.0776999059596e-08!GO:0009056;catabolic process;1.1024611605378e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.1328613128695e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.55063376811601e-08!GO:0017038;protein import;1.55063376811601e-08!GO:0051276;chromosome organization and biogenesis;1.66343531629954e-08!GO:0030120;vesicle coat;1.71872396210416e-08!GO:0030662;coated vesicle membrane;1.71872396210416e-08!GO:0048519;negative regulation of biological process;2.21958380636761e-08!GO:0006399;tRNA metabolic process;2.22844099796895e-08!GO:0046034;ATP metabolic process;2.30707498996265e-08!GO:0006281;DNA repair;2.53443039826547e-08!GO:0016604;nuclear body;2.66261946738624e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.7030030099638e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.7030030099638e-08!GO:0051246;regulation of protein metabolic process;2.78070129917051e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.14244637200043e-08!GO:0005768;endosome;3.57896305727646e-08!GO:0044427;chromosomal part;3.75443726070306e-08!GO:0051188;cofactor biosynthetic process;3.97869092540603e-08!GO:0005788;endoplasmic reticulum lumen;5.31153955959145e-08!GO:0051301;cell division;5.357736178894e-08!GO:0019829;cation-transporting ATPase activity;5.47393580059615e-08!GO:0009719;response to endogenous stimulus;6.7130462086965e-08!GO:0006366;transcription from RNA polymerase II promoter;7.75465614003665e-08!GO:0065004;protein-DNA complex assembly;9.3830037828552e-08!GO:0006323;DNA packaging;9.48051696311576e-08!GO:0065002;intracellular protein transport across a membrane;1.11572146012333e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.28081460472231e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.28081460472231e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.28081460472231e-07!GO:0006754;ATP biosynthetic process;1.55327454879395e-07!GO:0006753;nucleoside phosphate metabolic process;1.55327454879395e-07!GO:0043067;regulation of programmed cell death;2.0537709495804e-07!GO:0043038;amino acid activation;2.13070094285699e-07!GO:0006418;tRNA aminoacylation for protein translation;2.13070094285699e-07!GO:0043039;tRNA aminoacylation;2.13070094285699e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.25069642384796e-07!GO:0009117;nucleotide metabolic process;2.26253346227708e-07!GO:0051187;cofactor catabolic process;2.37495219206253e-07!GO:0006099;tricarboxylic acid cycle;2.37979565978808e-07!GO:0046356;acetyl-CoA catabolic process;2.37979565978808e-07!GO:0048475;coated membrane;2.40902610591061e-07!GO:0030117;membrane coat;2.40902610591061e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.42306696378572e-07!GO:0042981;regulation of apoptosis;2.84129142866503e-07!GO:0005643;nuclear pore;3.81323327196052e-07!GO:0008361;regulation of cell size;4.04411082910231e-07!GO:0004386;helicase activity;4.2636217791503e-07!GO:0044431;Golgi apparatus part;4.72016884197849e-07!GO:0016049;cell growth;4.85662507753145e-07!GO:0031324;negative regulation of cellular metabolic process;5.00633543025888e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.04542160452486e-07!GO:0009109;coenzyme catabolic process;6.15021362569724e-07!GO:0006916;anti-apoptosis;6.26873371325125e-07!GO:0016607;nuclear speck;6.36997691526263e-07!GO:0006084;acetyl-CoA metabolic process;6.9389821582028e-07!GO:0000151;ubiquitin ligase complex;7.84003492291244e-07!GO:0006333;chromatin assembly or disassembly;1.08671037854118e-06!GO:0008026;ATP-dependent helicase activity;1.16077159392707e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.21848144268665e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.23942512597783e-06!GO:0032446;protein modification by small protein conjugation;1.27160574977175e-06!GO:0000279;M phase;1.29230633901688e-06!GO:0006091;generation of precursor metabolites and energy;1.34960783588277e-06!GO:0043069;negative regulation of programmed cell death;1.36030709719696e-06!GO:0015630;microtubule cytoskeleton;1.45728969678568e-06!GO:0000785;chromatin;1.55535653043834e-06!GO:0016567;protein ubiquitination;1.65537402404789e-06!GO:0009108;coenzyme biosynthetic process;2.01775501276648e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.0214878572719e-06!GO:0006364;rRNA processing;2.10326424302356e-06!GO:0031988;membrane-bound vesicle;2.12637768739225e-06!GO:0004298;threonine endopeptidase activity;2.20941909852614e-06!GO:0045259;proton-transporting ATP synthase complex;2.2261423591473e-06!GO:0007005;mitochondrion organization and biogenesis;2.28076968210292e-06!GO:0006752;group transfer coenzyme metabolic process;2.38850057386992e-06!GO:0046930;pore complex;2.81676974084764e-06!GO:0043066;negative regulation of apoptosis;3.09103356263867e-06!GO:0005525;GTP binding;3.23843081028745e-06!GO:0006260;DNA replication;3.4994515379593e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.50220286268763e-06!GO:0050794;regulation of cellular process;3.54193975795844e-06!GO:0003697;single-stranded DNA binding;3.56550133949767e-06!GO:0051789;response to protein stimulus;3.8331258441217e-06!GO:0006986;response to unfolded protein;3.8331258441217e-06!GO:0016072;rRNA metabolic process;4.06295573860971e-06!GO:0005798;Golgi-associated vesicle;4.13845545904296e-06!GO:0001558;regulation of cell growth;4.36036777302409e-06!GO:0031252;leading edge;4.36241050970193e-06!GO:0006334;nucleosome assembly;4.89995528121718e-06!GO:0009892;negative regulation of metabolic process;5.55296808208029e-06!GO:0005773;vacuole;5.58907133691597e-06!GO:0005667;transcription factor complex;5.81258572220589e-06!GO:0031982;vesicle;6.13490525329587e-06!GO:0003714;transcription corepressor activity;6.36093749823586e-06!GO:0005762;mitochondrial large ribosomal subunit;6.57475881503602e-06!GO:0000315;organellar large ribosomal subunit;6.57475881503602e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.14518812641335e-06!GO:0045786;negative regulation of progression through cell cycle;7.14518812641335e-06!GO:0031410;cytoplasmic vesicle;7.23072181260191e-06!GO:0006793;phosphorus metabolic process;8.54072206842164e-06!GO:0006796;phosphate metabolic process;8.54072206842164e-06!GO:0043566;structure-specific DNA binding;8.69332161918619e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.93904109153693e-06!GO:0016787;hydrolase activity;1.00123746011553e-05!GO:0006613;cotranslational protein targeting to membrane;1.08979205069485e-05!GO:0016853;isomerase activity;1.15511341505231e-05!GO:0007010;cytoskeleton organization and biogenesis;1.17136060805752e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.1811052312782e-05!GO:0051170;nuclear import;1.24679438427998e-05!GO:0045454;cell redox homeostasis;1.31857714018846e-05!GO:0044440;endosomal part;1.31857714018846e-05!GO:0010008;endosome membrane;1.31857714018846e-05!GO:0031497;chromatin assembly;1.44676821162774e-05!GO:0006606;protein import into nucleus;1.47462916332283e-05!GO:0006403;RNA localization;1.49096582045929e-05!GO:0016564;transcription repressor activity;1.63687399918638e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.64323683958804e-05!GO:0000245;spliceosome assembly;1.64323683958804e-05!GO:0050657;nucleic acid transport;1.67599461824674e-05!GO:0051236;establishment of RNA localization;1.67599461824674e-05!GO:0050658;RNA transport;1.67599461824674e-05!GO:0016859;cis-trans isomerase activity;2.21396460109951e-05!GO:0016740;transferase activity;2.24126487208655e-05!GO:0016310;phosphorylation;2.27446289902923e-05!GO:0032561;guanyl ribonucleotide binding;2.41695188347769e-05!GO:0019001;guanyl nucleotide binding;2.41695188347769e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.55056958018257e-05!GO:0005770;late endosome;2.81071154635213e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.82584432569146e-05!GO:0005769;early endosome;3.08419696753028e-05!GO:0000323;lytic vacuole;3.08419696753028e-05!GO:0005764;lysosome;3.08419696753028e-05!GO:0051329;interphase of mitotic cell cycle;3.71947081204249e-05!GO:0043623;cellular protein complex assembly;3.76855477131377e-05!GO:0000139;Golgi membrane;3.81388742492415e-05!GO:0030133;transport vesicle;4.23276661469233e-05!GO:0016481;negative regulation of transcription;5.25833050266868e-05!GO:0008654;phospholipid biosynthetic process;5.27565281062302e-05!GO:0030867;rough endoplasmic reticulum membrane;5.56980306121721e-05!GO:0000314;organellar small ribosomal subunit;6.66014382149841e-05!GO:0005763;mitochondrial small ribosomal subunit;6.66014382149841e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.62379698745673e-05!GO:0019843;rRNA binding;7.94244895884414e-05!GO:0006612;protein targeting to membrane;8.12629469904508e-05!GO:0005905;coated pit;9.75024699723928e-05!GO:0016568;chromatin modification;0.000107770136062411!GO:0031968;organelle outer membrane;0.000110130082952027!GO:0003724;RNA helicase activity;0.000110599127092201!GO:0016779;nucleotidyltransferase activity;0.000111549720478866!GO:0003713;transcription coactivator activity;0.000115252408127634!GO:0019867;outer membrane;0.000118110104628018!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000120797566453234!GO:0051325;interphase;0.000138144103531499!GO:0048522;positive regulation of cellular process;0.000138144103531499!GO:0030029;actin filament-based process;0.000150864374667979!GO:0043021;ribonucleoprotein binding;0.000160209707169742!GO:0005813;centrosome;0.000194749844514079!GO:0008092;cytoskeletal protein binding;0.000202370070644499!GO:0005819;spindle;0.000222575707581941!GO:0033116;ER-Golgi intermediate compartment membrane;0.000225646506795767!GO:0005885;Arp2/3 protein complex;0.000246259694678253!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000257762416248896!GO:0005048;signal sequence binding;0.000270200599164279!GO:0040008;regulation of growth;0.000274847796743253!GO:0051028;mRNA transport;0.000283191364380043!GO:0030663;COPI coated vesicle membrane;0.000323852302203854!GO:0030126;COPI vesicle coat;0.000323852302203854!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000327997461625736!GO:0015399;primary active transmembrane transporter activity;0.000327997461625736!GO:0004576;oligosaccharyl transferase activity;0.000341888127077709!GO:0008250;oligosaccharyl transferase complex;0.00035075839000331!GO:0019899;enzyme binding;0.000357051529247731!GO:0050789;regulation of biological process;0.000383023169745867!GO:0005815;microtubule organizing center;0.000391660304473548!GO:0044262;cellular carbohydrate metabolic process;0.000401108150833512!GO:0007243;protein kinase cascade;0.000422468544811568!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000423899454529524!GO:0003899;DNA-directed RNA polymerase activity;0.000435131091577667!GO:0043681;protein import into mitochondrion;0.000437313141928518!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000487085773529847!GO:0009165;nucleotide biosynthetic process;0.000498499001951561!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000506976708582682!GO:0016563;transcription activator activity;0.000515316450530094!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000522349775582406!GO:0005741;mitochondrial outer membrane;0.00056896292902541!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000643473192847334!GO:0031072;heat shock protein binding;0.00065920619692078!GO:0051427;hormone receptor binding;0.000693726065739584!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00076985327430737!GO:0046474;glycerophospholipid biosynthetic process;0.000868373778161091!GO:0018196;peptidyl-asparagine modification;0.00086924219745028!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00086924219745028!GO:0051920;peroxiredoxin activity;0.000896859589067509!GO:0030137;COPI-coated vesicle;0.000911919818958116!GO:0051168;nuclear export;0.00104464296653209!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00104464296653209!GO:0030132;clathrin coat of coated pit;0.00119301439457595!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00125673077899512!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00125673077899512!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00125673077899512!GO:0019752;carboxylic acid metabolic process;0.0012706768907109!GO:0006082;organic acid metabolic process;0.00127639442034275!GO:0006626;protein targeting to mitochondrion;0.00129899999177264!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00131786889403757!GO:0035257;nuclear hormone receptor binding;0.00134143929025755!GO:0007050;cell cycle arrest;0.00134846892466982!GO:0043284;biopolymer biosynthetic process;0.00138908171577314!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00156100868103023!GO:0030658;transport vesicle membrane;0.0017034333787892!GO:0008186;RNA-dependent ATPase activity;0.00170924538238479!GO:0006891;intra-Golgi vesicle-mediated transport;0.00172980839435569!GO:0006414;translational elongation;0.00173218166714824!GO:0022890;inorganic cation transmembrane transporter activity;0.00182703859817852!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00182703859817852!GO:0015002;heme-copper terminal oxidase activity;0.00182703859817852!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00182703859817852!GO:0004129;cytochrome-c oxidase activity;0.00182703859817852!GO:0016126;sterol biosynthetic process;0.00197115630694762!GO:0005791;rough endoplasmic reticulum;0.00198741809934086!GO:0051252;regulation of RNA metabolic process;0.00206651431917887!GO:0046489;phosphoinositide biosynthetic process;0.00221646397911363!GO:0007006;mitochondrial membrane organization and biogenesis;0.00228701750832141!GO:0048500;signal recognition particle;0.00240629121109543!GO:0000082;G1/S transition of mitotic cell cycle;0.0024223927378555!GO:0007051;spindle organization and biogenesis;0.0024599011412918!GO:0030176;integral to endoplasmic reticulum membrane;0.00250038263900353!GO:0048471;perinuclear region of cytoplasm;0.00265157277656623!GO:0015992;proton transport;0.00267618798299406!GO:0006383;transcription from RNA polymerase III promoter;0.00276192232282023!GO:0003729;mRNA binding;0.0028204555968802!GO:0065009;regulation of a molecular function;0.00290044642580602!GO:0006818;hydrogen transport;0.00293495858953775!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00295650636755597!GO:0043492;ATPase activity, coupled to movement of substances;0.00331345688228452!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00345458705819998!GO:0016044;membrane organization and biogenesis;0.00347155891900903!GO:0009967;positive regulation of signal transduction;0.00365567215496275!GO:0043488;regulation of mRNA stability;0.0037596780072251!GO:0043487;regulation of RNA stability;0.0037596780072251!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00389085845197714!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00389085845197714!GO:0030134;ER to Golgi transport vesicle;0.00391004764074571!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00398807741590749!GO:0006839;mitochondrial transport;0.00401664878141294!GO:0008180;signalosome;0.00415954638985582!GO:0006979;response to oxidative stress;0.00417344585442581!GO:0004004;ATP-dependent RNA helicase activity;0.00426753236817091!GO:0001726;ruffle;0.00430996047556279!GO:0016197;endosome transport;0.00437665604597861!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00445170983592432!GO:0051087;chaperone binding;0.00451196713635508!GO:0051128;regulation of cellular component organization and biogenesis;0.00480609364439428!GO:0000059;protein import into nucleus, docking;0.00481022602056594!GO:0030127;COPII vesicle coat;0.00485521637733345!GO:0012507;ER to Golgi transport vesicle membrane;0.00485521637733345!GO:0005869;dynactin complex;0.00488055092066108!GO:0030660;Golgi-associated vesicle membrane;0.00490415713685413!GO:0007264;small GTPase mediated signal transduction;0.00494375091632845!GO:0030027;lamellipodium;0.00494375091632845!GO:0030880;RNA polymerase complex;0.00497865826194964!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00499581584784579!GO:0045047;protein targeting to ER;0.00499581584784579!GO:0046483;heterocycle metabolic process;0.00499581584784579!GO:0043433;negative regulation of transcription factor activity;0.00514453181225533!GO:0005874;microtubule;0.00553682088767378!GO:0008632;apoptotic program;0.00564442130368395!GO:0030118;clathrin coat;0.00575970026961521!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00582073120153295!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00585465607483182!GO:0000786;nucleosome;0.00587058046201683!GO:0006520;amino acid metabolic process;0.00606635565313551!GO:0017166;vinculin binding;0.00610511840469283!GO:0006595;polyamine metabolic process;0.00613582214756383!GO:0016363;nuclear matrix;0.00622933621520907!GO:0000075;cell cycle checkpoint;0.0062363532683189!GO:0045892;negative regulation of transcription, DNA-dependent;0.00639723650005207!GO:0048487;beta-tubulin binding;0.0064380406494576!GO:0003690;double-stranded DNA binding;0.00645937166870955!GO:0030833;regulation of actin filament polymerization;0.00648054720488189!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00673641431087499!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00696373984701968!GO:0045045;secretory pathway;0.00704812572880693!GO:0008312;7S RNA binding;0.00709801973731782!GO:0006509;membrane protein ectodomain proteolysis;0.00709801973731782!GO:0033619;membrane protein proteolysis;0.00709801973731782!GO:0008022;protein C-terminus binding;0.00731561401386214!GO:0048518;positive regulation of biological process;0.00735553517214154!GO:0003746;translation elongation factor activity;0.00752708515088979!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00763261033780492!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00763261033780492!GO:0045792;negative regulation of cell size;0.00769891735665282!GO:0004177;aminopeptidase activity;0.00818135578957843!GO:0048468;cell development;0.00829683790332477!GO:0006695;cholesterol biosynthetic process;0.00830090395647376!GO:0051287;NAD binding;0.00830968960826714!GO:0015631;tubulin binding;0.00830968960826714!GO:0006650;glycerophospholipid metabolic process;0.00831006807181823!GO:0005684;U2-dependent spliceosome;0.00835685133013371!GO:0006497;protein amino acid lipidation;0.00838481501897376!GO:0046519;sphingoid metabolic process;0.00851760025425141!GO:0016408;C-acyltransferase activity;0.00885604658549771!GO:0042802;identical protein binding;0.00902172848589496!GO:0030308;negative regulation of cell growth;0.00902377898618557!GO:0030041;actin filament polymerization;0.00902870004084902!GO:0003684;damaged DNA binding;0.00917150093014986!GO:0008139;nuclear localization sequence binding;0.00921651028933153!GO:0000049;tRNA binding;0.00930038753899858!GO:0006261;DNA-dependent DNA replication;0.00935913019297336!GO:0003779;actin binding;0.0095264404389034!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0097720083337951!GO:0000428;DNA-directed RNA polymerase complex;0.0097720083337951!GO:0008154;actin polymerization and/or depolymerization;0.0098448961561476!GO:0007040;lysosome organization and biogenesis;0.0098448961561476!GO:0019222;regulation of metabolic process;0.00999105198875243!GO:0030659;cytoplasmic vesicle membrane;0.0102597137261196!GO:0019206;nucleoside kinase activity;0.0102718247686704!GO:0008047;enzyme activator activity;0.0103279723430386!GO:0043022;ribosome binding;0.0105896523240065!GO:0016272;prefoldin complex;0.0114174532979699!GO:0008033;tRNA processing;0.0115904715820738!GO:0050662;coenzyme binding;0.0117552527733623!GO:0006402;mRNA catabolic process;0.0119056453899146!GO:0006778;porphyrin metabolic process;0.0119568331078833!GO:0033013;tetrapyrrole metabolic process;0.0119568331078833!GO:0006352;transcription initiation;0.0120999955486812!GO:0005862;muscle thin filament tropomyosin;0.0121023968011518!GO:0006118;electron transport;0.0122325486042664!GO:0019798;procollagen-proline dioxygenase activity;0.0125206437462308!GO:0006740;NADPH regeneration;0.0126354756426119!GO:0006098;pentose-phosphate shunt;0.0126354756426119!GO:0031529;ruffle organization and biogenesis;0.0126354756426119!GO:0030125;clathrin vesicle coat;0.0127298761770984!GO:0030665;clathrin coated vesicle membrane;0.0127298761770984!GO:0007088;regulation of mitosis;0.0128333010155245!GO:0006672;ceramide metabolic process;0.0133305566744434!GO:0006220;pyrimidine nucleotide metabolic process;0.0133669169232265!GO:0046467;membrane lipid biosynthetic process;0.0136445316898501!GO:0051540;metal cluster binding;0.0136998698198863!GO:0051536;iron-sulfur cluster binding;0.0136998698198863!GO:0008610;lipid biosynthetic process;0.0137652627486957!GO:0031902;late endosome membrane;0.0143379821540881!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0144479205391416!GO:0005774;vacuolar membrane;0.0146559221275988!GO:0018193;peptidyl-amino acid modification;0.0147437664400715!GO:0051539;4 iron, 4 sulfur cluster binding;0.0147438764363125!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0153250743894314!GO:0006790;sulfur metabolic process;0.0156791660186246!GO:0031543;peptidyl-proline dioxygenase activity;0.0158173376000797!GO:0006289;nucleotide-excision repair;0.0163401070244568!GO:0030521;androgen receptor signaling pathway;0.0164327455387987!GO:0007021;tubulin folding;0.0164327455387987!GO:0032984;macromolecular complex disassembly;0.0170370907438107!GO:0044433;cytoplasmic vesicle part;0.0170521451053532!GO:0006506;GPI anchor biosynthetic process;0.0170641130145881!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0174919138013786!GO:0033043;regulation of organelle organization and biogenesis;0.0174919138013786!GO:0031418;L-ascorbic acid binding;0.0174919138013786!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0175876157313837!GO:0000776;kinetochore;0.0180847154433317!GO:0005832;chaperonin-containing T-complex;0.0185978026196483!GO:0007034;vacuolar transport;0.0186949592279303!GO:0042158;lipoprotein biosynthetic process;0.018738772688983!GO:0043065;positive regulation of apoptosis;0.0188582564866277!GO:0045936;negative regulation of phosphate metabolic process;0.0191719018454803!GO:0043624;cellular protein complex disassembly;0.0193906605461545!GO:0007033;vacuole organization and biogenesis;0.0195180699584486!GO:0005637;nuclear inner membrane;0.0200503121121316!GO:0000775;chromosome, pericentric region;0.0200828193676689!GO:0030145;manganese ion binding;0.0200828193676689!GO:0005583;fibrillar collagen;0.0200950295411256!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0211276460460129!GO:0003711;transcription elongation regulator activity;0.0212892833125287!GO:0000287;magnesium ion binding;0.0213220936348073!GO:0044452;nucleolar part;0.0214227729773475!GO:0031901;early endosome membrane;0.0214459165956918!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0218382672706703!GO:0006984;ER-nuclear signaling pathway;0.0220710129046676!GO:0050811;GABA receptor binding;0.0221972805875343!GO:0032508;DNA duplex unwinding;0.0223138360122444!GO:0032392;DNA geometric change;0.0223138360122444!GO:0043068;positive regulation of programmed cell death;0.0223535823022433!GO:0030119;AP-type membrane coat adaptor complex;0.023558770718986!GO:0005657;replication fork;0.0236193689667999!GO:0030032;lamellipodium biogenesis;0.0242074466988372!GO:0031625;ubiquitin protein ligase binding;0.0243878150053247!GO:0000096;sulfur amino acid metabolic process;0.0246792642932984!GO:0035258;steroid hormone receptor binding;0.0247132799308624!GO:0009112;nucleobase metabolic process;0.0247455430272989!GO:0006401;RNA catabolic process;0.0248021790430384!GO:0006505;GPI anchor metabolic process;0.0253395986462769!GO:0051052;regulation of DNA metabolic process;0.0254210161682443!GO:0003678;DNA helicase activity;0.0254763350029219!GO:0006607;NLS-bearing substrate import into nucleus;0.0254763350029219!GO:0035035;histone acetyltransferase binding;0.0255187520657825!GO:0042168;heme metabolic process;0.025743915488841!GO:0008652;amino acid biosynthetic process;0.0260190064317481!GO:0006611;protein export from nucleus;0.0261648880252672!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0264476697457107!GO:0045941;positive regulation of transcription;0.0266532384844149!GO:0008094;DNA-dependent ATPase activity;0.0269337052998951!GO:0006302;double-strand break repair;0.0269337052998951!GO:0000339;RNA cap binding;0.0273208413320234!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0274368957374319!GO:0043241;protein complex disassembly;0.02768069244183!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0277488779649627!GO:0007160;cell-matrix adhesion;0.0279804704046022!GO:0005801;cis-Golgi network;0.028115805669794!GO:0006007;glucose catabolic process;0.0286603601397009!GO:0048037;cofactor binding;0.0287163847399722!GO:0004674;protein serine/threonine kinase activity;0.028731580386447!GO:0045926;negative regulation of growth;0.0287848506082927!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0291160844511626!GO:0012506;vesicle membrane;0.0293492966576477!GO:0008234;cysteine-type peptidase activity;0.0293492966576477!GO:0031589;cell-substrate adhesion;0.0294444443523005!GO:0030384;phosphoinositide metabolic process;0.0300445712579204!GO:0044437;vacuolar part;0.0307418111826779!GO:0006354;RNA elongation;0.0308440954465488!GO:0000209;protein polyubiquitination;0.0317112010092441!GO:0009116;nucleoside metabolic process;0.0321787047122162!GO:0050681;androgen receptor binding;0.0324959779758682!GO:0022408;negative regulation of cell-cell adhesion;0.0328709121889861!GO:0008168;methyltransferase activity;0.0329362586897173!GO:0030508;thiol-disulfide exchange intermediate activity;0.033123318306657!GO:0033559;unsaturated fatty acid metabolic process;0.033123318306657!GO:0006636;unsaturated fatty acid biosynthetic process;0.033123318306657!GO:0030433;ER-associated protein catabolic process;0.0333591390892037!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0333591390892037!GO:0007093;mitotic cell cycle checkpoint;0.0335821158981598!GO:0006268;DNA unwinding during replication;0.0342635956463852!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0343533980926056!GO:0031124;mRNA 3'-end processing;0.0343968377988638!GO:0003682;chromatin binding;0.0344373760452793!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0344443284378061!GO:0010257;NADH dehydrogenase complex assembly;0.0344443284378061!GO:0033108;mitochondrial respiratory chain complex assembly;0.0344443284378061!GO:0031371;ubiquitin conjugating enzyme complex;0.0344443284378061!GO:0006779;porphyrin biosynthetic process;0.0345690473317161!GO:0033014;tetrapyrrole biosynthetic process;0.0345690473317161!GO:0007346;regulation of progression through mitotic cell cycle;0.0347416031328051!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0347416031328051!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0347416031328051!GO:0051101;regulation of DNA binding;0.0352716049782294!GO:0000792;heterochromatin;0.0352716049782294!GO:0032940;secretion by cell;0.0353299298284546!GO:0008538;proteasome activator activity;0.0356807811801606!GO:0030503;regulation of cell redox homeostasis;0.0356807811801606!GO:0051098;regulation of binding;0.0357387952086168!GO:0045334;clathrin-coated endocytic vesicle;0.0362027703153585!GO:0006739;NADP metabolic process;0.0369443689104497!GO:0005581;collagen;0.0370436239600425!GO:0007052;mitotic spindle organization and biogenesis;0.0370533379152491!GO:0003923;GPI-anchor transamidase activity;0.0376765605921241!GO:0016255;attachment of GPI anchor to protein;0.0376765605921241!GO:0042765;GPI-anchor transamidase complex;0.0376765605921241!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0378089651726858!GO:0042326;negative regulation of phosphorylation;0.0378414522564564!GO:0008484;sulfuric ester hydrolase activity;0.0378898813133997!GO:0007041;lysosomal transport;0.0381096672747229!GO:0030131;clathrin adaptor complex;0.0387464382596866!GO:0030911;TPR domain binding;0.0391277527895854!GO:0016741;transferase activity, transferring one-carbon groups;0.0392319517196099!GO:0033673;negative regulation of kinase activity;0.0396904469666336!GO:0006469;negative regulation of protein kinase activity;0.0396904469666336!GO:0006635;fatty acid beta-oxidation;0.0399792683296296!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0406618259723093!GO:0005758;mitochondrial intermembrane space;0.0410784019653459!GO:0032906;transforming growth factor-beta2 production;0.0418245037674212!GO:0032909;regulation of transforming growth factor-beta2 production;0.0418245037674212!GO:0065007;biological regulation;0.0424884328462462!GO:0005765;lysosomal membrane;0.0432706198058464!GO:0045893;positive regulation of transcription, DNA-dependent;0.0433737548955226!GO:0007030;Golgi organization and biogenesis;0.0439106500376578!GO:0001952;regulation of cell-matrix adhesion;0.0448144863887034!GO:0003756;protein disulfide isomerase activity;0.0448845155639823!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0448845155639823!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0453952482902665!GO:0006405;RNA export from nucleus;0.0453952482902665!GO:0003988;acetyl-CoA C-acyltransferase activity;0.046187348601603!GO:0048144;fibroblast proliferation;0.046234459118255!GO:0048145;regulation of fibroblast proliferation;0.046234459118255!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0464749266953536!GO:0009262;deoxyribonucleotide metabolic process;0.0465124447484163!GO:0005096;GTPase activator activity;0.0466307831774762!GO:0005784;translocon complex;0.0475361669438322!GO:0016251;general RNA polymerase II transcription factor activity;0.0488039036657594!GO:0008320;protein transmembrane transporter activity;0.0488039036657594!GO:0050790;regulation of catalytic activity;0.0488039036657594!GO:0030518;steroid hormone receptor signaling pathway;0.0497447201883393
|sample_id=11304
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=periodontal ligament
|top_motifs=FOXL1:2.31666039327;ESR1:2.13693925221;ALX4:2.10206462816;UFEwm:1.93359256392;NKX2-2,8:1.93021240992;TFAP4:1.62308329845;HES1:1.55826227554;PPARG:1.51825903729;GLI1..3:1.48083817522;RXR{A,B,G}:1.47496996927;EVI1:1.41500592452;HMGA1,2:1.38487871744;NR3C1:1.3831348185;AIRE:1.3317826909;TAL1_TCF{3,4,12}:1.29568935438;NANOG{mouse}:1.11563296602;GCM1,2:1.10344371011;PAX1,9:1.09386932023;SRF:1.05648175;NKX3-1:1.00869769882;TP53:1.00323357002;TEAD1:0.937376625488;MYBL2:0.933000382793;HMX1:0.91826570532;ZIC1..3:0.8793399201;GZF1:0.876364289002;ZNF238:0.875652896271;XBP1:0.866811631487;EBF1:0.797553669696;NFIX:0.780196045114;NFE2L1:0.777815931353;KLF4:0.754181935739;NKX3-2:0.734573934299;ZBTB6:0.727074048725;MAFB:0.711098706338;TFCP2:0.70252410623;HAND1,2:0.659351600644;TLX1..3_NFIC{dimer}:0.635671158983;IKZF1:0.621442342609;MTE{core}:0.559012284499;SOX17:0.541014493391;LHX3,4:0.536932567683;MAZ:0.526262817703;POU3F1..4:0.473604530652;ARID5B:0.465972143559;YY1:0.43800268843;MYB:0.432573360989;GFI1B:0.422360205976;TBX4,5:0.386120777938;GTF2I:0.382702658915;HOX{A5,B5}:0.378878667342;GTF2A1,2:0.358560695678;NFATC1..3:0.356412032467;XCPE1{core}:0.34187996815;GFI1:0.321912469912;RXRA_VDR{dimer}:0.299887399887;ATF6:0.291578927301;TFAP2{A,C}:0.287035810348;GATA4:0.275690893168;CDC5L:0.267274919689;TFAP2B:0.246954449675;BACH2:0.196281752992;TOPORS:0.19008976774;EN1,2:0.188737886026;NFE2L2:0.188103677251;HLF:0.181297496488;MTF1:0.151258627265;ZNF423:0.140673618737;MZF1:0.11049271944;SPZ1:0.108762839464;T:0.0730833553718;TFDP1:0.0584771429592;MEF2{A,B,C,D}:0.0464911250358;PDX1:0.0362861837808;PRDM1:0.0331968862345;TBP:0.030466524102;HIC1:0.0285845228778;STAT2,4,6:0.0155778624335;PAX4:0.0118107440472;LEF1_TCF7_TCF7L1,2:-0.00664692371301;bHLH_family:-0.0105305533947;HOX{A4,D4}:-0.012871448446;STAT5{A,B}:-0.0238233535206;PATZ1:-0.0396101746904;IRF1,2:-0.0415482027839;ELK1,4_GABP{A,B1}:-0.0459470516855;FOS_FOS{B,L1}_JUN{B,D}:-0.0529028896951;FOXO1,3,4:-0.0544451790568;FOXA2:-0.0673704121115;ONECUT1,2:-0.0836423777712;HSF1,2:-0.083823202576;AR:-0.0845557944386;ZFP161:-0.0950424412674;DMAP1_NCOR{1,2}_SMARC:-0.0963123815407;EGR1..3:-0.13259566056;NHLH1,2:-0.137657690515;MYFfamily:-0.138947476525;PAX8:-0.140216378678;PRRX1,2:-0.142054542187;NKX2-3_NKX2-5:-0.159314440556;PAX5:-0.163545490084;PITX1..3:-0.168895495012;NR6A1:-0.168959248297;PAX3,7:-0.192045903397;RUNX1..3:-0.233957020589;RREB1:-0.246554867833;SOX5:-0.254780151141;SMAD1..7,9:-0.259689692903;NR5A1,2:-0.26061529196;ZNF148:-0.266198238558;NFE2:-0.26710768968;ZNF143:-0.272615119982;FOSL2:-0.277343491516;E2F1..5:-0.278975875917;HNF1A:-0.285505765452;SP1:-0.2866645203;FOX{I1,J2}:-0.291585033355;CEBPA,B_DDIT3:-0.302967221687;REST:-0.311702771071;CREB1:-0.325798970112;FOXP1:-0.329396310628;POU5F1:-0.354786638231;HOX{A6,A7,B6,B7}:-0.370140224649;DBP:-0.379346428102;RFX1:-0.38096170464;ZNF384:-0.390684036604;NFKB1_REL_RELA:-0.402568558978;MED-1{core}:-0.406698866708;HNF4A_NR2F1,2:-0.409982239527;SREBF1,2:-0.414210157018;BPTF:-0.416550006428;FOXM1:-0.420186613896;AHR_ARNT_ARNT2:-0.435757280271;HOXA9_MEIS1:-0.445475751729;FOXD3:-0.450700204333;ATF5_CREB3:-0.489037550654;ADNP_IRX_SIX_ZHX:-0.4978645338;ZBTB16:-0.520186586734;POU6F1:-0.52167379776;NKX2-1,4:-0.525712340867;RFX2..5_RFXANK_RFXAP:-0.55522255483;ETS1,2:-0.569549172312;SPIB:-0.571165933425;POU1F1:-0.579871663637;IKZF2:-0.584190239058;SPI1:-0.587384432277;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.593862001138;POU2F1..3:-0.603415984313;JUN:-0.603956890257;HIF1A:-0.606043335459;LMO2:-0.618109202506;ELF1,2,4:-0.63032381131;ATF4:-0.635623254031;MYOD1:-0.650637853379;OCT4_SOX2{dimer}:-0.666057368346;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.667915755108;FOXP3:-0.668982840464;SNAI1..3:-0.690445944782;NKX6-1,2:-0.698169870976;RBPJ:-0.702138089994;NRF1:-0.702366443796;NFY{A,B,C}:-0.70791821815;SOX{8,9,10}:-0.710394190428;IRF7:-0.728252202111;PBX1:-0.732532655133;TEF:-0.747346231191;ESRRA:-0.748973511569;SOX2:-0.753520750052;NR1H4:-0.765801448178;NFIL3:-0.783345442254;PAX2:-0.789773810576;EP300:-0.812123808622;FOX{D1,D2}:-0.881910296829;TGIF1:-0.886306892469;PAX6:-0.903906950593;CDX1,2,4:-0.913540614797;BREu{core}:-0.926279875339;ZEB1:-0.93443889827;GATA6:-0.936191851276;RORA:-0.940922776526;HBP1_HMGB_SSRP1_UBTF:-0.943875570991;FOX{F1,F2,J1}:-1.01227720153;FOXN1:-1.11233964234;CRX:-1.12110911023;FOXQ1:-1.17122318514;CUX2:-1.19146705038;ATF2:-1.24529151755;VSX1,2:-1.25059538137;NANOG:-1.25967797002;STAT1,3:-1.28631069904;TLX2:-1.3586808736;ALX1:-1.62557092085
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11304-117B8;search_select_hide=table117:FF:11304-117B8
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Fibroblast - Periodontal Ligament, donor5 (PL30)
Species:Human (Homo sapiens)
Library ID:CNhs11953
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueperiodontal ligament
dev stage40 years old adult
sexmale
age40
cell typefibroblast
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005996
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11953 CAGE DRX008278 DRR009150
Accession ID Hg19

Library idBAMCTSS
CNhs11953 DRZ000575 DRZ001960
Accession ID Hg38

Library idBAMCTSS
CNhs11953 DRZ011925 DRZ013310
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0356
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0562
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.953
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00272
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.155
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.195
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.641
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.326
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.343
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.116
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0935
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0721
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.208
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.054
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.226
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.283
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.208
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.404
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.575
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.906
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.67
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11953

Jaspar motifP-value
MA0002.20.956
MA0003.10.332
MA0004.10.341
MA0006.10.0689
MA0007.10.509
MA0009.10.615
MA0014.10.845
MA0017.10.992
MA0018.21.20193e-5
MA0019.10.97
MA0024.10.0174
MA0025.10.00109
MA0027.10.97
MA0028.10.251
MA0029.10.419
MA0030.10.00269
MA0031.10.00306
MA0035.20.00574
MA0038.10.206
MA0039.20.0116
MA0040.10.267
MA0041.10.78
MA0042.10.615
MA0043.11.64904e-4
MA0046.10.263
MA0047.20.125
MA0048.10.0352
MA0050.10.239
MA0051.10.599
MA0052.10.694
MA0055.10.964
MA0057.10.122
MA0058.10.123
MA0059.10.962
MA0060.11.40203e-5
MA0061.10.475
MA0062.21.07904e-4
MA0065.20.73
MA0066.10.117
MA0067.10.0103
MA0068.10.533
MA0069.10.0258
MA0070.10.83
MA0071.10.458
MA0072.10.623
MA0073.10.966
MA0074.10.238
MA0076.10.0722
MA0077.10.444
MA0078.10.607
MA0079.20.798
MA0080.21.5529e-8
MA0081.10.0164
MA0083.17.77384e-4
MA0084.10.0612
MA0087.10.696
MA0088.10.475
MA0090.10.00443
MA0091.10.0502
MA0092.10.0996
MA0093.10.228
MA0099.20.25
MA0100.10.911
MA0101.10.00527
MA0102.20.0153
MA0103.10.0602
MA0104.20.0355
MA0105.10.516
MA0106.10.0188
MA0107.10.00679
MA0108.20.655
MA0111.10.652
MA0112.22.15874e-4
MA0113.10.535
MA0114.10.561
MA0115.10.327
MA0116.10.0724
MA0117.10.528
MA0119.10.0314
MA0122.10.152
MA0124.10.258
MA0125.10.119
MA0131.10.273
MA0135.10.611
MA0136.11.50477e-10
MA0137.20.0452
MA0138.20.418
MA0139.10.755
MA0140.10.0572
MA0141.10.29
MA0142.10.748
MA0143.10.593
MA0144.10.95
MA0145.10.27
MA0146.10.442
MA0147.10.0508
MA0148.10.341
MA0149.10.109
MA0150.10.308
MA0152.10.159
MA0153.10.416
MA0154.10.201
MA0155.10.296
MA0156.13.9062e-7
MA0157.10.15
MA0159.10.902
MA0160.10.404
MA0162.10.0449
MA0163.10.00137
MA0164.10.643
MA0258.10.0181
MA0259.10.0836



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11953

Novel motifP-value
10.434
100.179
1000.793
1010.397
1020.199
1030.451
1040.462
1050.328
1060.0157
1070.0302
1080.288
1090.187
110.231
1100.433
1110.816
1120.141
1130.0168
1140.301
1150.0214
1160.0205
1170.613
1180.721
1190.624
120.161
1200.192
1210.619
1220.049
1230.135
1240.674
1250.135
1260.935
1270.827
1280.0372
1290.87
130.923
1300.86
1310.813
1320.537
1330.549
1340.169
1350.648
1360.265
1370.319
1380.624
1390.909
140.531
1400.425
1410.269
1420.842
1430.642
1440.74
1450.399
1460.906
1470.125
1480.983
1490.047
150.714
1500.153
1510.634
1520.00347
1530.987
1540.331
1550.0188
1560.884
1570.153
1580.00363
1590.317
160.019
1600.261
1610.729
1620.645
1630.978
1640.217
1650.314
1660.0345
1670.744
1680.966
1690.0409
170.232
180.128
190.00416
20.316
200.545
210.0719
220.21
230.576
240.987
250.793
260.13
270.686
280.283
290.491
30.296
300.633
310.602
321.19574e-16
330.239
340.801
350.994
360.0645
370.0332
380.677
390.373
40.713
400.893
410.862
420.914
430.293
440.112
450.994
460.123
470.524
480.568
490.638
50.714
500.633
510.735
520.357
530.556
540.512
550.0695
560.984
570.553
580.737
590.00464
60.36
600.366
610.842
620.475
630.166
640.856
650.263
660.838
670.627
680.983
690.222
70.488
700.14
710.0959
720.372
730.00354
740.284
750.414
760.564
770.0109
780.645
790.0016
80.0322
800.162
810.959
820.208
830.293
840.76
850.0291
860.295
870.0212
880.261
890.0175
90.699
900.631
910.88
920.33
930.539
940.676
950.187
960.748
970.901
980.445
990.00644



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11953


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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