FF:11331-117E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005117 | |DRA_sample_Accession=CAGE@SAMD00005117 | ||
|accession_numbers=CAGE;DRX008420;DRR009292;DRZ000717;DRZ002102 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005117 | ||
|accession_numbers=CAGE;DRX008420;DRR009292;DRZ000717;DRZ002102;DRZ012067;DRZ013452 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037180;DRR041546;DRZ007188 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.35!225.17!SOX15;;chr1:6479968..6479986,-!p1@HES2!2.22!165.82!HES2;;chr11:34642612..34642646,+!p1@EHF!2.13!132.53!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.07!130.93!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.97!92.83!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.71!50.73!TP63;;chr12:54785054..54785072,-!p4@ZNF385A!1.70!55.14!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.70!48.72!ZBED2;;chr17:7492684..7492778,-!p2@SOX15!1.67!95.04!SOX15;;chr15:83953397..83953425,-!p1@BNC1!1.66!51.33!BNC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!58.55!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.71!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.53!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.43!25.66!HOXD11;;chr11:34645791..34645836,+!p3@EHF!1.37!22.66!EHF;;chr6:34524093..34524135,-!p1@SPDEF!1.32!19.85!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!1.31!23.26!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!1.28!18.25!FOXA1;;chr19:9811347..9811351,-!p1@ZNF812!1.26!17.24!ZNF812;;chr12:66218836..66218888,+!p1@HMGA2!1.23!147.17!HMGA2;;chr2:176969179..176969226,+!p2@HOXD11!1.23!16.04!HOXD11;;chr11:34642656..34642667,+!p2@EHF!1.23!15.84!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!20.05!TFAP2C;;chr11:65686802..65686818,+!p6@DRAP1!1.19!24.86!DRAP1;;chr6:34524049..34524089,-!p2@SPDEF!1.17!13.63!SPDEF;;chr10:8096772..8096787,+!p2@GATA3!1.16!16.04!GATA3;;chr17:7492504..7492520,-!p3@SOX15!1.14!12.83!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.13!12.43!SOX7;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!105.47!PPP1R13L;;chr6:34524025..34524045,-!p3@SPDEF!1.11!12.03!SPDEF;;chr17:70117153..70117174,+!p1@SOX9!1.10!118.70!SOX9;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.44!PITX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.08!11.03!TFCP2L1;;chr1:209979375..209979386,-!p4@IRF6!1.07!10.83!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.07!10.63!GRHL2;;chr3:12330560..12330579,+!p1@PPARG!1.06!12.03!PPARG;;chr3:111314230..111314241,-!p2@ZBED2!1.05!10.23!ZBED2;;chr12:66218598..66218645,+!p2@HMGA2!1.04!46.72!HMGA2;;chr15:67418047..67418093,+!p4@SMAD3!1.03!12.23!SMAD3;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.87!EPAS1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.64!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!1.00!108.67!MLLT11;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.75!SNAI2;;chr15:101069113..101069169,-!p1@CERS3!1.00!9.02!CERS3;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.82!HOXA9;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.66!HMGA2;;chr19:20278043..20278054,+!p2@ZNF486!0.98!8.62!ZNF486;;chr12:66218904..66218913,+!p11@HMGA2!0.96!8.02!HMGA2;;chr6:21593973..21593988,+!p1@SOX4!0.95!290.73!SOX4;;chr6:10415484..10415508,-!p3@TFAP2A!0.95!7.82!TFAP2A;;chr17:7492979..7492991,-!p5@SOX15!0.95!7.82!SOX15;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.96!SOX4;;chr1:935398..935465,-!p2@HES4!0.94!16.44!HES4;;chr15:83953373..83953386,-!p2@BNC1!0.94!7.62!BNC1;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.62!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.93!83.41!KLF5;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.23!MLLT11;;chr3:189507523..189507535,+!p5@TP63!0.91!7.22!TP63;;chr5:72744594..72744609,-!p1@FOXD1!0.90!32.88!FOXD1;;chr2:101591314..101591333,+!p2@NPAS2!0.89!7.82!NPAS2;;chr15:67418119..67418162,+!p5@SMAD3!0.89!7.62!SMAD3;;chr11:65686732..65686756,+!p2@DRAP1!0.88!29.27!DRAP1;;chr8:49833978..49833996,-!p1@SNAI2!0.87!138.35!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.87!10.83!FOXQ1;;chr10:126138597..126138612,-!p1@NKX1-2!0.87!6.42!NKX1-2;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.42!HMGA2;;chr17:46806067..46806097,-!p1@HOXB13!0.87!6.42!HOXB13;;chrY:2803415..2803468,+!p1@ZFY!0.86!6.22!ZFY;;chr10:8095593..8095625,+!p3@GATA3!0.85!7.22!GATA3;;chr14:37131058..37131139,+!p1@PAX9!0.85!6.02!PAX9;;chr6:10412576..10412599,-!p5@TFAP2A!0.85!6.02!TFAP2A;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!446.13!TAX1BP3;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.13!TBX3;;chr17:45928521..45928539,-!p1@SP6!0.83!5.81!SP6;;chr17:36105042..36105060,-!p1@HNF1B!0.82!5.61!HNF1B;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.61!HOXA9;;chr8:102504690..102504704,+!p3@GRHL2!0.81!5.41!GRHL2;;chr3:5021268..5021282,+!p4@BHLHE40!0.80!11.43!BHLHE40;;chr12:125002739..125002756,-!p6@NCOR2!0.80!8.22!NCOR2;;chr1:151032739..151032748,+!p6@MLLT11!0.80!6.82!MLLT11;;chr2:208030647..208030689,-!p1@KLF7!0.79!46.52!KLF7;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.42!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!0.79!5.21!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!0.78!5.01!HOXA11;;chr1:209979449..209979460,-!p3@IRF6!0.78!5.01!IRF6;;chr17:45928443..45928473,-!p2@SP6!0.78!5.01!SP6;;chr1:935467..935484,-!p1@HES4!0.77!23.26!HES4;;chr2:101436564..101436647,+!p1@NPAS2!0.76!107.27!NPAS2;;chr19:53496768..53496799,-!p1@ZNF702P!0.76!7.62!ZNF702P;;chr3:189507460..189507471,+!p3@TP63!0.76!4.81!TP63;;chr6:21594845..21594908,+!p6@SOX4!0.75!7.82!SOX4;;chr3:25469724..25469773,+!p1@RARB!0.75!7.02!RARB;;chr7:27135591..27135658,-!p1@HOXA1!0.74!9.22!HOXA1;;chr3:150126904..150126958,+!p7@TSC22D2!0.74!8.42!TSC22D2;;chr16:67881588..67881612,-!p2@CENPT!0.74!6.42!CENPT;;chr1:8938709..8938720,-!p3@ENO1!0.73!235.60!ENO1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.45!SIX1;;chr1:201979743..201979762,+!p1@ELF3!0.73!4.41!ELF3;;chr5:2751762..2751784,-!p1@IRX2!0.73!4.41!IRX2;;chr1:151032782..151032801,+!p4@MLLT11!0.72!9.22!MLLT11;;chr6:21597370..21597408,+!p5@SOX4!0.72!7.22!SOX4;;chr2:176969124..176969155,+!p5@HOXD11!0.72!4.21!HOXD11;;chr3:150126759..150126784,+!p2@TSC22D2!0.71!21.05!TSC22D2;;chr12:66218212..66218244,+!p5@HMGA2!0.71!6.22!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.70!6.02!NCOR2;;chr12:66358080..66358094,+!p15@HMGA2!0.70!4.01!HMGA2;;chr12:48298765..48298783,-!p2@VDR!0.69!8.82!VDR;;chr15:96869255..96869291,+!p6@NR2F2!0.69!7.62!NR2F2;;chr2:231084820..231084836,-!p5@SP110!0.69!4.61!SP110;;chr3:150126101..150126118,+!p6@TSC22D2!0.68!6.62!TSC22D2;;chr17:46688334..46688385,-!p1@HOXB7!0.68!5.81!HOXB7;;chr12:115122005..115122016,-!p3@TBX3!0.68!4.61!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.68!3.81!HMGA2;;chr2:176994408..176994492,+!p1@HOXD8!0.68!3.81!HOXD8;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.81!TFAP2A;;chr14:62162285..62162296,+!p3@HIF1A!0.67!21.86!HIF1A;;chr11:34643638..34643667,+!p8@EHF!0.66!3.61!EHF;;chrY:21906594..21906622,-!p1@KDM5D!0.66!3.61!KDM5D;;chr15:67418177..67418204,+!p9@SMAD3!0.66!3.61!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.66!3.61!ZNF668;;chr14:21566731..21566836,-!p1@ZNF219!0.65!43.31!ZNF219;;chr2:70314240..70314256,+!p4@PCBP1!0.65!7.82!PCBP1;;chr21:36260343..36260402,-!p6@RUNX1!0.65!6.02!RUNX1;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.44!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.63!14.64!FOSL1;;chr12:27485762..27485776,+!p3@ARNTL2!0.63!10.03!ARNTL2;;chr1:8924055..8924074,-!p9@ENO1!0.63!6.22!ENO1;;chr6:10412392..10412409,-!p4@TFAP2A!0.63!3.81!TFAP2A;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.64!ZNF503;;chr10:77161133..77161176,-!p3@ZNF503!0.62!7.62!ZNF503;;chr14:21566882..21566898,-!p3@ZNF219!0.62!5.01!ZNF219;;chr21:38071430..38071456,+!p1@SIM2!0.62!3.21!SIM2;;chr16:67881647..67881663,-!p3@CENPT!0.62!3.21!CENPT;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.69!HIF1A;;chr19:52598958..52599026,-!p1@ZNF841!0.61!35.49!ZNF841;;chr10:77161504..77161530,-!p1@ZNF503!0.60!47.92!ZNF503;;chr8:128750654..128750793,+!p3@MYC!0.60!14.04!MYC;;chr16:73092898..73092931,-!p1@ZFHX3!0.60!13.43!ZFHX3;;chr19:58326246..58326262,-!p2@ZNF552!0.60!8.02!ZNF552;;chr14:62203595..62203676,+!p4@HIF1A!0.60!6.22!HIF1A;;chr15:83953694..83953708,-!p4@BNC1!0.60!3.01!BNC1;;chr6:28321971..28321995,-!p1@ZNF323!0.60!3.01!ZNF323;;chr7:26191809..26191890,+!p1@NFE2L3!0.59!17.24!NFE2L3;;chr3:141087393..141087426,+!p3@ZBTB38!0.59!13.63!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!0.59!10.23!BCL11A;;chr2:231084639..231084654,-!p2@SP110!0.59!5.21!SP110;;chr12:66218573..66218596,+!p7@HMGA2!0.59!4.61!HMGA2;;chr13:73636516..73636532,+!p3@KLF5!0.59!3.41!KLF5;;chr12:80084737..80084763,-!p3@PAWR!0.58!12.43!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.58!5.01!RUNX1;;chr15:96869222..96869251,+!p18@NR2F2!0.58!3.41!NR2F2;;chr15:83953474..83953483,-!p3@BNC1!0.58!2.81!BNC1;;chr16:86612320..86612394,+!p1@FOXL1!0.58!2.81!FOXL1;;chr19:45908286..45908291,-!p3@PPP1R13L!0.58!2.81!PPP1R13L;;chr19:53758058..53758088,-!p2@ZNF677!0.57!10.63!ZNF677;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.01!KLF8;;chr1:8934931..8934947,-!p4@ENO1!0.56!10.43!ENO1;;chr19:17356189..17356221,-!p2@NR2F6!0.56!4.81!NR2F6;;chr10:77161650..77161661,-!p4@ZNF503!0.56!4.01!ZNF503;;chr1:201979703..201979721,+!p2@ELF3!0.56!2.61!ELF3;;chr20:18038521..18038571,-!p1@OVOL2!0.56!2.61!OVOL2;;chr3:138665937..138665968,-!p1@FOXL2!0.56!2.61!FOXL2;;chr7:27192185..27192209,-!p1@HOXA3!0.56!2.61!HOXA3;;chr19:20278012..20278034,+!p1@ZNF486!0.55!26.67!ZNF486;;chr6:21597283..21597312,+!p7@SOX4!0.55!3.61!SOX4;;chr10:111967345..111967422,+!p1@MXI1!0.54!51.33!MXI1;;chr13:41593425..41593480,-!p1@ELF1!0.54!19.65!ELF1;;chr17:41623692..41623715,-!p1@ETV4!0.54!13.03!ETV4;;chr12:26277929..26277955,-!p3@BHLHE41!0.54!3.81!BHLHE41;;chr14:23755297..23755350,-!p1@HOMEZ!0.53!36.29!HOMEZ;;chr21:36421535..36421610,-!p2@RUNX1!0.53!10.43!RUNX1;;chr19:47922750..47922795,-!p1@MEIS3!0.53!4.41!MEIS3;;chr20:50721803..50721857,-!p2@ZFP64!0.53!4.21!ZFP64;;chr15:96869292..96869320,+!p15@NR2F2!0.53!3.81!NR2F2;;chr5:72744562..72744573,-!p3@FOXD1!0.53!3.21!FOXD1;;chr7:27224795..27224840,-!p2@HOXA11!0.53!2.41!HOXA11;;chr10:126138622..126138638,-!p2@NKX1-2!0.53!2.41!NKX1-2;;chr10:8100691..8100732,+!p5@GATA3!0.53!2.41!GATA3;;chr12:54332608..54332636,+!p1@HOXC13!0.53!2.41!HOXC13;;chr14:74256787..74256858,-!p6@C14orf43!0.53!2.41!C14orf43;;chr19:45908278..45908282,-!p5@PPP1R13L!0.53!2.41!PPP1R13L;;chr10:3827389..3827408,-!p1@KLF6!0.52!228.98!KLF6;;chr19:50169013..50169062,-!p2@IRF3!0.52!17.04!IRF3;;chr2:70142232..70142251,+!p1@MXD1!0.52!16.44!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.52!11.43!MAF;;chr2:214015111..214015179,-!p1@IKZF2!0.52!4.81!IKZF2;;chr6:21597514..21597578,+!p4@SOX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| |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.35!225.17!SOX15;;chr1:6479968..6479986,-!p1@HES2!2.22!165.82!HES2;;chr11:34642612..34642646,+!p1@EHF!2.13!132.53!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.07!130.93!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.97!92.83!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.71!50.73!TP63;;chr12:54785054..54785072,-!p4@ZNF385A!1.70!55.14!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.70!48.72!ZBED2;;chr17:7492684..7492778,-!p2@SOX15!1.67!95.04!SOX15;;chr15:83953397..83953425,-!p1@BNC1!1.66!51.33!BNC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!58.55!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.71!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.53!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.43!25.66!HOXD11;;chr11:34645791..34645836,+!p3@EHF!1.37!22.66!EHF;;chr6:34524093..34524135,-!p1@SPDEF!1.32!19.85!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!1.31!23.26!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!1.28!18.25!FOXA1;;chr19:9811347..9811351,-!p1@ZNF812!1.26!17.24!ZNF812;;chr12:66218836..66218888,+!p1@HMGA2!1.23!147.17!HMGA2;;chr2:176969179..176969226,+!p2@HOXD11!1.23!16.04!HOXD11;;chr11:34642656..34642667,+!p2@EHF!1.23!15.84!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!20.05!TFAP2C;;chr11:65686802..65686818,+!p6@DRAP1!1.19!24.86!DRAP1;;chr6:34524049..34524089,-!p2@SPDEF!1.17!13.63!SPDEF;;chr10:8096772..8096787,+!p2@GATA3!1.16!16.04!GATA3;;chr17:7492504..7492520,-!p3@SOX15!1.14!12.83!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.13!12.43!SOX7;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!105.47!PPP1R13L;;chr6:34524025..34524045,-!p3@SPDEF!1.11!12.03!SPDEF;;chr17:70117153..70117174,+!p1@SOX9!1.10!118.70!SOX9;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.44!PITX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.08!11.03!TFCP2L1;;chr1:209979375..209979386,-!p4@IRF6!1.07!10.83!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.07!10.63!GRHL2;;chr3:12330560..12330579,+!p1@PPARG!1.06!12.03!PPARG;;chr3:111314230..111314241,-!p2@ZBED2!1.05!10.23!ZBED2;;chr12:66218598..66218645,+!p2@HMGA2!1.04!46.72!HMGA2;;chr15:67418047..67418093,+!p4@SMAD3!1.03!12.23!SMAD3;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.87!EPAS1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.64!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!1.00!108.67!MLLT11;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.75!SNAI2;;chr15:101069113..101069169,-!p1@CERS3!1.00!9.02!CERS3;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.82!HOXA9;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.66!HMGA2;;chr19:20278043..20278054,+!p2@ZNF486!0.98!8.62!ZNF486;;chr12:66218904..66218913,+!p11@HMGA2!0.96!8.02!HMGA2;;chr6:21593973..21593988,+!p1@SOX4!0.95!290.73!SOX4;;chr6:10415484..10415508,-!p3@TFAP2A!0.95!7.82!TFAP2A;;chr17:7492979..7492991,-!p5@SOX15!0.95!7.82!SOX15;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.96!SOX4;;chr1:935398..935465,-!p2@HES4!0.94!16.44!HES4;;chr15:83953373..83953386,-!p2@BNC1!0.94!7.62!BNC1;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.62!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.93!83.41!KLF5;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.23!MLLT11;;chr3:189507523..189507535,+!p5@TP63!0.91!7.22!TP63;;chr5:72744594..72744609,-!p1@FOXD1!0.90!32.88!FOXD1;;chr2:101591314..101591333,+!p2@NPAS2!0.89!7.82!NPAS2;;chr15:67418119..67418162,+!p5@SMAD3!0.89!7.62!SMAD3;;chr11:65686732..65686756,+!p2@DRAP1!0.88!29.27!DRAP1;;chr8:49833978..49833996,-!p1@SNAI2!0.87!138.35!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.87!10.83!FOXQ1;;chr10:126138597..126138612,-!p1@NKX1-2!0.87!6.42!NKX1-2;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.42!HMGA2;;chr17:46806067..46806097,-!p1@HOXB13!0.87!6.42!HOXB13;;chrY:2803415..2803468,+!p1@ZFY!0.86!6.22!ZFY;;chr10:8095593..8095625,+!p3@GATA3!0.85!7.22!GATA3;;chr14:37131058..37131139,+!p1@PAX9!0.85!6.02!PAX9;;chr6:10412576..10412599,-!p5@TFAP2A!0.85!6.02!TFAP2A;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!446.13!TAX1BP3;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.13!TBX3;;chr17:45928521..45928539,-!p1@SP6!0.83!5.81!SP6;;chr17:36105042..36105060,-!p1@HNF1B!0.82!5.61!HNF1B;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.61!HOXA9;;chr8:102504690..102504704,+!p3@GRHL2!0.81!5.41!GRHL2;;chr3:5021268..5021282,+!p4@BHLHE40!0.80!11.43!BHLHE40;;chr12:125002739..125002756,-!p6@NCOR2!0.80!8.22!NCOR2;;chr1:151032739..151032748,+!p6@MLLT11!0.80!6.82!MLLT11;;chr2:208030647..208030689,-!p1@KLF7!0.79!46.52!KLF7;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.42!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!0.79!5.21!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!0.78!5.01!HOXA11;;chr1:209979449..209979460,-!p3@IRF6!0.78!5.01!IRF6;;chr17:45928443..45928473,-!p2@SP6!0.78!5.01!SP6;;chr1:935467..935484,-!p1@HES4!0.77!23.26!HES4;;chr2:101436564..101436647,+!p1@NPAS2!0.76!107.27!NPAS2;;chr19:53496768..53496799,-!p1@ZNF702P!0.76!7.62!ZNF702P;;chr3:189507460..189507471,+!p3@TP63!0.76!4.81!TP63;;chr6:21594845..21594908,+!p6@SOX4!0.75!7.82!SOX4;;chr3:25469724..25469773,+!p1@RARB!0.75!7.02!RARB;;chr7:27135591..27135658,-!p1@HOXA1!0.74!9.22!HOXA1;;chr3:150126904..150126958,+!p7@TSC22D2!0.74!8.42!TSC22D2;;chr16:67881588..67881612,-!p2@CENPT!0.74!6.42!CENPT;;chr1:8938709..8938720,-!p3@ENO1!0.73!235.60!ENO1;;chr14:61116183..61116208,-!p1@SIX1!0.73!18.45!SIX1;;chr1:201979743..201979762,+!p1@ELF3!0.73!4.41!ELF3;;chr5:2751762..2751784,-!p1@IRX2!0.73!4.41!IRX2;;chr1:151032782..151032801,+!p4@MLLT11!0.72!9.22!MLLT11;;chr6:21597370..21597408,+!p5@SOX4!0.72!7.22!SOX4;;chr2:176969124..176969155,+!p5@HOXD11!0.72!4.21!HOXD11;;chr3:150126759..150126784,+!p2@TSC22D2!0.71!21.05!TSC22D2;;chr12:66218212..66218244,+!p5@HMGA2!0.71!6.22!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.70!6.02!NCOR2;;chr12:66358080..66358094,+!p15@HMGA2!0.70!4.01!HMGA2;;chr12:48298765..48298783,-!p2@VDR!0.69!8.82!VDR;;chr15:96869255..96869291,+!p6@NR2F2!0.69!7.62!NR2F2;;chr2:231084820..231084836,-!p5@SP110!0.69!4.61!SP110;;chr3:150126101..150126118,+!p6@TSC22D2!0.68!6.62!TSC22D2;;chr17:46688334..46688385,-!p1@HOXB7!0.68!5.81!HOXB7;;chr12:115122005..115122016,-!p3@TBX3!0.68!4.61!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.68!3.81!HMGA2;;chr2:176994408..176994492,+!p1@HOXD8!0.68!3.81!HOXD8;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.81!TFAP2A;;chr14:62162285..62162296,+!p3@HIF1A!0.67!21.86!HIF1A;;chr11:34643638..34643667,+!p8@EHF!0.66!3.61!EHF;;chrY:21906594..21906622,-!p1@KDM5D!0.66!3.61!KDM5D;;chr15:67418177..67418204,+!p9@SMAD3!0.66!3.61!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.66!3.61!ZNF668;;chr14:21566731..21566836,-!p1@ZNF219!0.65!43.31!ZNF219;;chr2:70314240..70314256,+!p4@PCBP1!0.65!7.82!PCBP1;;chr21:36260343..36260402,-!p6@RUNX1!0.65!6.02!RUNX1;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.44!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.63!14.64!FOSL1;;chr12:27485762..27485776,+!p3@ARNTL2!0.63!10.03!ARNTL2;;chr1:8924055..8924074,-!p9@ENO1!0.63!6.22!ENO1;;chr6:10412392..10412409,-!p4@TFAP2A!0.63!3.81!TFAP2A;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.64!ZNF503;;chr10:77161133..77161176,-!p3@ZNF503!0.62!7.62!ZNF503;;chr14:21566882..21566898,-!p3@ZNF219!0.62!5.01!ZNF219;;chr21:38071430..38071456,+!p1@SIM2!0.62!3.21!SIM2;;chr16:67881647..67881663,-!p3@CENPT!0.62!3.21!CENPT;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.69!HIF1A;;chr19:52598958..52599026,-!p1@ZNF841!0.61!35.49!ZNF841;;chr10:77161504..77161530,-!p1@ZNF503!0.60!47.92!ZNF503;;chr8:128750654..128750793,+!p3@MYC!0.60!14.04!MYC;;chr16:73092898..73092931,-!p1@ZFHX3!0.60!13.43!ZFHX3;;chr19:58326246..58326262,-!p2@ZNF552!0.60!8.02!ZNF552;;chr14:62203595..62203676,+!p4@HIF1A!0.60!6.22!HIF1A;;chr15:83953694..83953708,-!p4@BNC1!0.60!3.01!BNC1;;chr6:28321971..28321995,-!p1@ZNF323!0.60!3.01!ZNF323;;chr7:26191809..26191890,+!p1@NFE2L3!0.59!17.24!NFE2L3;;chr3:141087393..141087426,+!p3@ZBTB38!0.59!13.63!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!0.59!10.23!BCL11A;;chr2:231084639..231084654,-!p2@SP110!0.59!5.21!SP110;;chr12:66218573..66218596,+!p7@HMGA2!0.59!4.61!HMGA2;;chr13:73636516..73636532,+!p3@KLF5!0.59!3.41!KLF5;;chr12:80084737..80084763,-!p3@PAWR!0.58!12.43!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.58!5.01!RUNX1;;chr15:96869222..96869251,+!p18@NR2F2!0.58!3.41!NR2F2;;chr15:83953474..83953483,-!p3@BNC1!0.58!2.81!BNC1;;chr16:86612320..86612394,+!p1@FOXL1!0.58!2.81!FOXL1;;chr19:45908286..45908291,-!p3@PPP1R13L!0.58!2.81!PPP1R13L;;chr19:53758058..53758088,-!p2@ZNF677!0.57!10.63!ZNF677;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.01!KLF8;;chr1:8934931..8934947,-!p4@ENO1!0.56!10.43!ENO1;;chr19:17356189..17356221,-!p2@NR2F6!0.56!4.81!NR2F6;;chr10:77161650..77161661,-!p4@ZNF503!0.56!4.01!ZNF503;;chr1:201979703..201979721,+!p2@ELF3!0.56!2.61!ELF3;;chr20:18038521..18038571,-!p1@OVOL2!0.56!2.61!OVOL2;;chr3:138665937..138665968,-!p1@FOXL2!0.56!2.61!FOXL2;;chr7:27192185..27192209,-!p1@HOXA3!0.56!2.61!HOXA3;;chr19:20278012..20278034,+!p1@ZNF486!0.55!26.67!ZNF486;;chr6:21597283..21597312,+!p7@SOX4!0.55!3.61!SOX4;;chr10:111967345..111967422,+!p1@MXI1!0.54!51.33!MXI1;;chr13:41593425..41593480,-!p1@ELF1!0.54!19.65!ELF1;;chr17:41623692..41623715,-!p1@ETV4!0.54!13.03!ETV4;;chr12:26277929..26277955,-!p3@BHLHE41!0.54!3.81!BHLHE41;;chr14:23755297..23755350,-!p1@HOMEZ!0.53!36.29!HOMEZ;;chr21:36421535..36421610,-!p2@RUNX1!0.53!10.43!RUNX1;;chr19:47922750..47922795,-!p1@MEIS3!0.53!4.41!MEIS3;;chr20:50721803..50721857,-!p2@ZFP64!0.53!4.21!ZFP64;;chr15:96869292..96869320,+!p15@NR2F2!0.53!3.81!NR2F2;;chr5:72744562..72744573,-!p3@FOXD1!0.53!3.21!FOXD1;;chr7:27224795..27224840,-!p2@HOXA11!0.53!2.41!HOXA11;;chr10:126138622..126138638,-!p2@NKX1-2!0.53!2.41!NKX1-2;;chr10:8100691..8100732,+!p5@GATA3!0.53!2.41!GATA3;;chr12:54332608..54332636,+!p1@HOXC13!0.53!2.41!HOXC13;;chr14:74256787..74256858,-!p6@C14orf43!0.53!2.41!C14orf43;;chr19:45908278..45908282,-!p5@PPP1R13L!0.53!2.41!PPP1R13L;;chr10:3827389..3827408,-!p1@KLF6!0.52!228.98!KLF6;;chr19:50169013..50169062,-!p2@IRF3!0.52!17.04!IRF3;;chr2:70142232..70142251,+!p1@MXD1!0.52!16.44!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.52!11.43!MAF;;chr2:214015111..214015179,-!p1@IKZF2!0.52!4.81!IKZF2;;chr6:21597514..21597578,+!p4@SOX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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002231;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911 | |||
|ffid_belonging_in_development=CL:0000223 | |ffid_belonging_in_development=CL:0000223 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11331-117E8 | |id=FF:11331-117E8 | ||
|is_a=EFO:0002091;;FF:0000145 | |is_a=EFO:0002091;;FF:0000145 | ||
Line 46: | Line 54: | ||
|library_id=CNhs11972 | |library_id=CNhs11972 | ||
|library_id_phase_based=2:CNhs11972 | |library_id_phase_based=2:CNhs11972 | ||
|name= | |microRNAs= | ||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11331 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CGTACG.11331 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11331 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CGTACG.11331 | |||
|name=Prostate Epithelial Cells, donor2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage= | |profile_hcage=CNhs11972,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 67: | Line 82: | ||
|rna_tube_id=1.17E+10 | |rna_tube_id=1.17E+10 | ||
|rna_weight_ug=24.4 | |rna_weight_ug=24.4 | ||
|rnaseq_library_id=SRhi10011.CGTACG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 90: | Line 106: | ||
|top_motifs=TP53:2.91090196525;TBX4,5:2.60540374091;TEF:2.07981557944;NKX2-2,8:2.0028848472;SPZ1:1.82610293288;UFEwm:1.81743271951;PPARG:1.80239491092;RXR{A,B,G}:1.66803238458;ZEB1:1.61279321796;TFCP2:1.48722312883;TEAD1:1.41100992117;HIF1A:1.37945215529;SNAI1..3:1.3467294699;PAX1,9:1.29284183126;ZBTB6:1.2908201128;ZIC1..3:1.1998219749;ONECUT1,2:1.0786383691;ARID5B:1.0753411382;EBF1:1.03971731634;HMX1:1.03765813081;ZNF238:0.975658396541;MYOD1:0.955441769489;HOX{A4,D4}:0.939649257136;XCPE1{core}:0.855870215295;ZNF148:0.837896605078;HAND1,2:0.826869327932;GZF1:0.81210449238;HSF1,2:0.811204099123;SP1:0.795657172715;NKX3-2:0.733242767176;TFAP2{A,C}:0.708979852091;MAZ:0.702278068832;FOXL1:0.697048237464;NKX2-3_NKX2-5:0.693496222254;IKZF1:0.681664910973;ZNF423:0.614788611854;LMO2:0.582733634709;SMAD1..7,9:0.495791169109;GLI1..3:0.465371711706;TOPORS:0.458464483045;EVI1:0.432595867123;ESR1:0.422715907125;TBP:0.414381645092;MTF1:0.402400992957;KLF4:0.390052173801;T:0.38991617836;NR1H4:0.37268423978;REST:0.369325286014;FOXM1:0.357294554179;FOSL2:0.339301520654;NR5A1,2:0.327449440848;ELK1,4_GABP{A,B1}:0.298064978796;GTF2A1,2:0.276240298062;SOX17:0.274238247697;BACH2:0.268933989269;FOS_FOS{B,L1}_JUN{B,D}:0.261923400155;POU3F1..4:0.232319540873;SOX2:0.229058429466;TFAP2B:0.225497450516;TFAP4:0.220707444913;RXRA_VDR{dimer}:0.220033935444;NR3C1:0.215623287588;FOXQ1:0.211195595787;bHLH_family:0.205954966247;ADNP_IRX_SIX_ZHX:0.175874509858;ALX4:0.169761731225;HOXA9_MEIS1:0.160733265244;MTE{core}:0.141533601609;HIC1:0.12785581097;ZNF143:0.119299952989;PAX5:0.104901585909;GFI1B:0.101884836212;LEF1_TCF7_TCF7L1,2:0.0772539026858;AR:0.0670571695073;NR6A1:0.0429049878974;FOXN1:0.0404152659016;TLX1..3_NFIC{dimer}:0.0401810360719;NFE2L1:0.0238193456338;VSX1,2:0.0104250268257;POU6F1:0.00465673299144;STAT5{A,B}:-0.0213242519949;GTF2I:-0.0352185607162;EN1,2:-0.0587258330503;FOXO1,3,4:-0.0692459495543;NKX2-1,4:-0.0773797182983;ATF6:-0.0785638346387;CDC5L:-0.0860416062568;HMGA1,2:-0.0890559108127;POU1F1:-0.0911157304368;HLF:-0.0991219503495;MED-1{core}:-0.112260494712;NFIL3:-0.123087654575;PAX2:-0.13219487665;PITX1..3:-0.135432135687;ZFP161:-0.159832097794;HNF4A_NR2F1,2:-0.168695324861;NHLH1,2:-0.181954867671;MYFfamily:-0.196466964683;PAX4:-0.205365098388;NRF1:-0.216338746324;NFE2:-0.218614720704;GCM1,2:-0.22421925507;POU2F1..3:-0.225428969633;HNF1A:-0.242523758678;TLX2:-0.269059433759;EP300:-0.272159506481;JUN:-0.289696991121;NFKB1_REL_RELA:-0.293583609555;MYBL2:-0.346855747629;MAFB:-0.350139729858;PRDM1:-0.357604661912;IRF7:-0.360065218876;CEBPA,B_DDIT3:-0.363964258488;LHX3,4:-0.36399137055;PAX8:-0.372604562977;GATA4:-0.383078896369;NKX6-1,2:-0.39932360747;SPI1:-0.409630879123;RREB1:-0.411032284017;ZBTB16:-0.413516735982;IKZF2:-0.429354774046;ESRRA:-0.444353535317;ETS1,2:-0.445711151006;EGR1..3:-0.462565357569;AIRE:-0.465653346795;SRF:-0.473621997232;SPIB:-0.49430910443;OCT4_SOX2{dimer}:-0.497852624596;PATZ1:-0.527221198896;FOXP1:-0.535693301833;SREBF1,2:-0.552714307842;TFDP1:-0.558538796234;ELF1,2,4:-0.565215406029;HOX{A5,B5}:-0.578314609323;RBPJ:-0.59463126555;STAT2,4,6:-0.594696897904;CRX:-0.597476905986;HES1:-0.598850120808;RUNX1..3:-0.620463514829;NFE2L2:-0.63011981746;RFX1:-0.653552910733;YY1:-0.6601205632;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.663188305893;PDX1:-0.676645664038;MZF1:-0.681842886858;FOX{F1,F2,J1}:-0.683668778799;ATF5_CREB3:-0.693095724209;PAX6:-0.693925199759;NKX3-1:-0.709155734444;NANOG{mouse}:-0.743667356639;FOX{D1,D2}:-0.744205377943;BPTF:-0.744251408257;RFX2..5_RFXANK_RFXAP:-0.760223147758;NFIX:-0.763975730681;ATF2:-0.768839798271;DMAP1_NCOR{1,2}_SMARC:-0.788128770331;ZNF384:-0.811383418053;IRF1,2:-0.811885177033;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.818260150261;SOX{8,9,10}:-0.834370386304;ATF4:-0.862843290867;GATA6:-0.869453911664;MEF2{A,B,C,D}:-0.882393312104;DBP:-0.937740934508;CREB1:-0.963574433849;NFATC1..3:-0.970888166785;STAT1,3:-0.976726709414;GFI1:-0.985646908278;NFY{A,B,C}:-0.985951855391;MYB:-0.989754795621;NANOG:-1.00229727443;FOXD3:-1.01828466386;FOX{I1,J2}:-1.03384494745;E2F1..5:-1.05184326298;FOXP3:-1.11310579582;PAX3,7:-1.16262067149;FOXA2:-1.20147632581;CUX2:-1.24092563966;TGIF1:-1.24143270166;HBP1_HMGB_SSRP1_UBTF:-1.2542054363;TAL1_TCF{3,4,12}:-1.2613457748;PBX1:-1.30349304198;AHR_ARNT_ARNT2:-1.36324345157;RORA:-1.39358165811;BREu{core}:-1.39380408863;XBP1:-1.43561822392;HOX{A6,A7,B6,B7}:-1.46008787773;POU5F1:-1.56087936711;CDX1,2,4:-1.60360320972;SOX5:-1.64299021233;PRRX1,2:-1.68112595943;ALX1:-1.83730626492 | |top_motifs=TP53:2.91090196525;TBX4,5:2.60540374091;TEF:2.07981557944;NKX2-2,8:2.0028848472;SPZ1:1.82610293288;UFEwm:1.81743271951;PPARG:1.80239491092;RXR{A,B,G}:1.66803238458;ZEB1:1.61279321796;TFCP2:1.48722312883;TEAD1:1.41100992117;HIF1A:1.37945215529;SNAI1..3:1.3467294699;PAX1,9:1.29284183126;ZBTB6:1.2908201128;ZIC1..3:1.1998219749;ONECUT1,2:1.0786383691;ARID5B:1.0753411382;EBF1:1.03971731634;HMX1:1.03765813081;ZNF238:0.975658396541;MYOD1:0.955441769489;HOX{A4,D4}:0.939649257136;XCPE1{core}:0.855870215295;ZNF148:0.837896605078;HAND1,2:0.826869327932;GZF1:0.81210449238;HSF1,2:0.811204099123;SP1:0.795657172715;NKX3-2:0.733242767176;TFAP2{A,C}:0.708979852091;MAZ:0.702278068832;FOXL1:0.697048237464;NKX2-3_NKX2-5:0.693496222254;IKZF1:0.681664910973;ZNF423:0.614788611854;LMO2:0.582733634709;SMAD1..7,9:0.495791169109;GLI1..3:0.465371711706;TOPORS:0.458464483045;EVI1:0.432595867123;ESR1:0.422715907125;TBP:0.414381645092;MTF1:0.402400992957;KLF4:0.390052173801;T:0.38991617836;NR1H4:0.37268423978;REST:0.369325286014;FOXM1:0.357294554179;FOSL2:0.339301520654;NR5A1,2:0.327449440848;ELK1,4_GABP{A,B1}:0.298064978796;GTF2A1,2:0.276240298062;SOX17:0.274238247697;BACH2:0.268933989269;FOS_FOS{B,L1}_JUN{B,D}:0.261923400155;POU3F1..4:0.232319540873;SOX2:0.229058429466;TFAP2B:0.225497450516;TFAP4:0.220707444913;RXRA_VDR{dimer}:0.220033935444;NR3C1:0.215623287588;FOXQ1:0.211195595787;bHLH_family:0.205954966247;ADNP_IRX_SIX_ZHX:0.175874509858;ALX4:0.169761731225;HOXA9_MEIS1:0.160733265244;MTE{core}:0.141533601609;HIC1:0.12785581097;ZNF143:0.119299952989;PAX5:0.104901585909;GFI1B:0.101884836212;LEF1_TCF7_TCF7L1,2:0.0772539026858;AR:0.0670571695073;NR6A1:0.0429049878974;FOXN1:0.0404152659016;TLX1..3_NFIC{dimer}:0.0401810360719;NFE2L1:0.0238193456338;VSX1,2:0.0104250268257;POU6F1:0.00465673299144;STAT5{A,B}:-0.0213242519949;GTF2I:-0.0352185607162;EN1,2:-0.0587258330503;FOXO1,3,4:-0.0692459495543;NKX2-1,4:-0.0773797182983;ATF6:-0.0785638346387;CDC5L:-0.0860416062568;HMGA1,2:-0.0890559108127;POU1F1:-0.0911157304368;HLF:-0.0991219503495;MED-1{core}:-0.112260494712;NFIL3:-0.123087654575;PAX2:-0.13219487665;PITX1..3:-0.135432135687;ZFP161:-0.159832097794;HNF4A_NR2F1,2:-0.168695324861;NHLH1,2:-0.181954867671;MYFfamily:-0.196466964683;PAX4:-0.205365098388;NRF1:-0.216338746324;NFE2:-0.218614720704;GCM1,2:-0.22421925507;POU2F1..3:-0.225428969633;HNF1A:-0.242523758678;TLX2:-0.269059433759;EP300:-0.272159506481;JUN:-0.289696991121;NFKB1_REL_RELA:-0.293583609555;MYBL2:-0.346855747629;MAFB:-0.350139729858;PRDM1:-0.357604661912;IRF7:-0.360065218876;CEBPA,B_DDIT3:-0.363964258488;LHX3,4:-0.36399137055;PAX8:-0.372604562977;GATA4:-0.383078896369;NKX6-1,2:-0.39932360747;SPI1:-0.409630879123;RREB1:-0.411032284017;ZBTB16:-0.413516735982;IKZF2:-0.429354774046;ESRRA:-0.444353535317;ETS1,2:-0.445711151006;EGR1..3:-0.462565357569;AIRE:-0.465653346795;SRF:-0.473621997232;SPIB:-0.49430910443;OCT4_SOX2{dimer}:-0.497852624596;PATZ1:-0.527221198896;FOXP1:-0.535693301833;SREBF1,2:-0.552714307842;TFDP1:-0.558538796234;ELF1,2,4:-0.565215406029;HOX{A5,B5}:-0.578314609323;RBPJ:-0.59463126555;STAT2,4,6:-0.594696897904;CRX:-0.597476905986;HES1:-0.598850120808;RUNX1..3:-0.620463514829;NFE2L2:-0.63011981746;RFX1:-0.653552910733;YY1:-0.6601205632;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.663188305893;PDX1:-0.676645664038;MZF1:-0.681842886858;FOX{F1,F2,J1}:-0.683668778799;ATF5_CREB3:-0.693095724209;PAX6:-0.693925199759;NKX3-1:-0.709155734444;NANOG{mouse}:-0.743667356639;FOX{D1,D2}:-0.744205377943;BPTF:-0.744251408257;RFX2..5_RFXANK_RFXAP:-0.760223147758;NFIX:-0.763975730681;ATF2:-0.768839798271;DMAP1_NCOR{1,2}_SMARC:-0.788128770331;ZNF384:-0.811383418053;IRF1,2:-0.811885177033;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.818260150261;SOX{8,9,10}:-0.834370386304;ATF4:-0.862843290867;GATA6:-0.869453911664;MEF2{A,B,C,D}:-0.882393312104;DBP:-0.937740934508;CREB1:-0.963574433849;NFATC1..3:-0.970888166785;STAT1,3:-0.976726709414;GFI1:-0.985646908278;NFY{A,B,C}:-0.985951855391;MYB:-0.989754795621;NANOG:-1.00229727443;FOXD3:-1.01828466386;FOX{I1,J2}:-1.03384494745;E2F1..5:-1.05184326298;FOXP3:-1.11310579582;PAX3,7:-1.16262067149;FOXA2:-1.20147632581;CUX2:-1.24092563966;TGIF1:-1.24143270166;HBP1_HMGB_SSRP1_UBTF:-1.2542054363;TAL1_TCF{3,4,12}:-1.2613457748;PBX1:-1.30349304198;AHR_ARNT_ARNT2:-1.36324345157;RORA:-1.39358165811;BREu{core}:-1.39380408863;XBP1:-1.43561822392;HOX{A6,A7,B6,B7}:-1.46008787773;POU5F1:-1.56087936711;CDX1,2,4:-1.60360320972;SOX5:-1.64299021233;PRRX1,2:-1.68112595943;ALX1:-1.83730626492 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11331-117E8;search_select_hide=table117:FF:11331-117E8 | |||
}} | }} |
Latest revision as of 17:52, 4 June 2020
Name: | Prostate Epithelial Cells, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11972 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11972
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11972
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.899 |
10 | 10 | 0.213 |
100 | 100 | 0.85 |
101 | 101 | 0.0861 |
102 | 102 | 0.253 |
103 | 103 | 0.173 |
104 | 104 | 0.663 |
105 | 105 | 0.82 |
106 | 106 | 0.037 |
107 | 107 | 0.176 |
108 | 108 | 0.0344 |
109 | 109 | 0.0475 |
11 | 11 | 0.613 |
110 | 110 | 0.415 |
111 | 111 | 0.43 |
112 | 112 | 0.202 |
113 | 113 | 0.758 |
114 | 114 | 0.32 |
115 | 115 | 0.0189 |
116 | 116 | 0.42 |
117 | 117 | 0.443 |
118 | 118 | 0.914 |
119 | 119 | 0.826 |
12 | 12 | 0.215 |
120 | 120 | 0.00933 |
121 | 121 | 0.824 |
122 | 122 | 0.758 |
123 | 123 | 0.336 |
124 | 124 | 0.151 |
125 | 125 | 0.168 |
126 | 126 | 0.83 |
127 | 127 | 0.62 |
128 | 128 | 0.206 |
129 | 129 | 0.0859 |
13 | 13 | 0.469 |
130 | 130 | 0.0559 |
131 | 131 | 0.965 |
132 | 132 | 0.14 |
133 | 133 | 0.107 |
134 | 134 | 0.152 |
135 | 135 | 0.632 |
136 | 136 | 0.0406 |
137 | 137 | 0.03 |
138 | 138 | 0.982 |
139 | 139 | 0.707 |
14 | 14 | 0.992 |
140 | 140 | 0.126 |
141 | 141 | 0.95 |
142 | 142 | 0.885 |
143 | 143 | 0.998 |
144 | 144 | 0.549 |
145 | 145 | 0.583 |
146 | 146 | 0.44 |
147 | 147 | 0.549 |
148 | 148 | 0.995 |
149 | 149 | 0.255 |
15 | 15 | 0.638 |
150 | 150 | 0.227 |
151 | 151 | 0.276 |
152 | 152 | 0.00355 |
153 | 153 | 0.981 |
154 | 154 | 0.755 |
155 | 155 | 0.802 |
156 | 156 | 0.638 |
157 | 157 | 0.627 |
158 | 158 | 0.0477 |
159 | 159 | 0.75 |
16 | 16 | 0.0271 |
160 | 160 | 0.951 |
161 | 161 | 0.821 |
162 | 162 | 0.327 |
163 | 163 | 0.944 |
164 | 164 | 0.479 |
165 | 165 | 0.82 |
166 | 166 | 0.574 |
167 | 167 | 0.214 |
168 | 168 | 0.377 |
169 | 169 | 0.102 |
17 | 17 | 0.335 |
18 | 18 | 0.7 |
19 | 19 | 0.502 |
2 | 2 | 0.0243 |
20 | 20 | 0.736 |
21 | 21 | 0.816 |
22 | 22 | 0.592 |
23 | 23 | 0.385 |
24 | 24 | 0.132 |
25 | 25 | 0.536 |
26 | 26 | 0.902 |
27 | 27 | 0.279 |
28 | 28 | 0.823 |
29 | 29 | 0.366 |
3 | 3 | 0.515 |
30 | 30 | 0.172 |
31 | 31 | 0.609 |
32 | 32 | 0.414 |
33 | 33 | 0.383 |
34 | 34 | 0.53 |
35 | 35 | 0.386 |
36 | 36 | 0.0473 |
37 | 37 | 0.127 |
38 | 38 | 0.764 |
39 | 39 | 0.219 |
4 | 4 | 0.681 |
40 | 40 | 0.421 |
41 | 41 | 0.505 |
42 | 42 | 0.665 |
43 | 43 | 0.863 |
44 | 44 | 0.0494 |
45 | 45 | 0.223 |
46 | 46 | 0.721 |
47 | 47 | 0.486 |
48 | 48 | 0.366 |
49 | 49 | 0.237 |
5 | 5 | 0.664 |
50 | 50 | 0.619 |
51 | 51 | 0.894 |
52 | 52 | 0.256 |
53 | 53 | 0.168 |
54 | 54 | 0.734 |
55 | 55 | 0.35 |
56 | 56 | 0.736 |
57 | 57 | 0.966 |
58 | 58 | 0.782 |
59 | 59 | 0.104 |
6 | 6 | 0.279 |
60 | 60 | 0.403 |
61 | 61 | 0.987 |
62 | 62 | 0.693 |
63 | 63 | 0.227 |
64 | 64 | 0.906 |
65 | 65 | 0.577 |
66 | 66 | 0.431 |
67 | 67 | 0.525 |
68 | 68 | 0.338 |
69 | 69 | 0.145 |
7 | 7 | 0.864 |
70 | 70 | 0.0348 |
71 | 71 | 0.863 |
72 | 72 | 0.868 |
73 | 73 | 0.00175 |
74 | 74 | 0.0246 |
75 | 75 | 0.478 |
76 | 76 | 0.966 |
77 | 77 | 0.00552 |
78 | 78 | 0.0622 |
79 | 79 | 0.105 |
8 | 8 | 0.464 |
80 | 80 | 0.0802 |
81 | 81 | 0.684 |
82 | 82 | 0.25 |
83 | 83 | 0.0811 |
84 | 84 | 0.606 |
85 | 85 | 0.146 |
86 | 86 | 0.736 |
87 | 87 | 0.00754 |
88 | 88 | 0.652 |
89 | 89 | 0.0215 |
9 | 9 | 0.686 |
90 | 90 | 0.578 |
91 | 91 | 0.367 |
92 | 92 | 0.534 |
93 | 93 | 0.578 |
94 | 94 | 0.303 |
95 | 95 | 0.068 |
96 | 96 | 0.605 |
97 | 97 | 0.634 |
98 | 98 | 0.781 |
99 | 99 | 0.0397 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11972
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)