FF:11331-117E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005117 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005117 | ||
|accession_numbers=CAGE;DRX008420;DRR009292;DRZ000717;DRZ002102;DRZ012067;DRZ013452 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037180;DRR041546;DRZ007188 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000145 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11331-117E8 | |id=FF:11331-117E8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000145 | ||
|is_obsolete= | |||
|library_id=CNhs11972 | |||
|library_id_phase_based=2:CNhs11972 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11331 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CGTACG.11331 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11331 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CGTACG.11331 | |||
|name=Prostate Epithelial Cells, donor2 | |name=Prostate Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11972,LSID836,release011,COMPLETED | |profile_hcage=CNhs11972,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.588772454504097,0,0.184026730221266,0.107203163646783,0,0,0,0,0,0,0,0,0.0793645050922885,0,0.146442146711949,0,0,0.262326602386696,0,0,0,0.223932230978358,0,0.106574310546926,0,0,-0.0535920846865738,0,0,0,0,0,0,0,0,0,0,0.204532206814983,0,0.306618573689935,0,0,0,0.833445954102234,0,0,0,0,0.176886564318084,0,0,0,0,0,0,0.0793645050922885,0.107539845572378,0,0,-0.0179791221208085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0249097915624606,0,0,0,0,0.0209176782804633,0.223893520391849,0,0,0.0396822525461442,0,0.0484067954742429,0.162964823569937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.204532206814983,0.50058058776375,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0484067954742429,0,0,0,0.0793645050922885,0,0,0,0.0793645050922885,0,0,0,-0.247178875285564,0.0396822525461442,-0.218325194602119,0.304349319433244,0,0,-0.14866992067531,0,0.0793645050922885,0,0,0,0,0,0,0,0.553991162989534,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,0.116038544025491,0.136187945737615,0,0.0793645050922885,0,0,0.048065997908413,0,0.18070005717805,-0.0827201683234173,0.0799679528689841,0.685651681183151,0.0325598461999084,0,0,0,0.463408636137351,0.3518884569046,0,0,0.0457829128692148,-0.181349618560659,0,0,-0.391044581551635,0,0.193059520236424,0.236713562437462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0554098590806821,-0.122456389863986,0,0.204532206814983,0.477853827376233,0.0746472034705692,-0.00958416044886834,0.0793645050922885,0,0.158968387793273,-0.0818489511318097,-0.0309407842266359,-0.0659166770956612,0,0.11325988572521,-0.0988209335668334,0.36962404830521,-0.0078914625612656,-0.147401849371139,0.014550487265136,0.0793645050922885,0.117360179128388,-0.370623016378888,0.0865724527717504,-0.0982139796722883,-0.0283407440129844,0.164097332194989,-0.0625606724323025,0,0.0793645050922885,0.00185557861298535,0.12790854670179,0.0154216291063743,-0.105130869241863,-0.234353690326885,0.260427947876527,0.0303275406784298,0.292681480398806,0.187723308232743,-0.315301326671077,-0.0395325284566706,-0.201675428746706,0.0969823708538786,-0.024915768533869,0,0.0793645050922885,0.00384790554126296,0.0363111165881954,-0.0368216225168396,-0.314246632206888,0.0013145559809127,0.0219279621615348,0.274677889252484,0.0793645050922885,0.0215936782220305,-0.0810911946450368,0,0,0.170313253719071,0,0,-0.0225584661338674,0.000188705607846,0,-0.147686999804247,-0.283731118880277,-0.153491056463256,0,0.0231225375655469,0.0499948498113775,0.0437694346184626,0,-0.0948541888076432,-0.0197665291306861,-0.093541945546309,0.161440082989448,0,0.0235938634117269,0.218116577442188,-0.0207466592477576,0.447787040783697,0.0209176782804633,-0.0861702528317911,-0.176126108000486,0.09055480490691,0.345616769828329,0.0297016694522905,-0.0881268324752877,0,-0.35129020676854,0.0995686416656186,0.0200261426806143,-0.0810496405496333,0,-0.00183242067440315,0,-0.272339805765441,0,-0.180117187311709,0.12318393076002,-0.359924869488398,-0.138038741328093,0,0.173436562943174,0.933932346321808,0.144704936176911,0,-0.0015426016779328,0.204532206814983,0.151212457637152,0.00215297684257854,-0.171968175318445,-0.0993072041330504,0,0.124698288000645,0,0,0.237553280431728,-0.1561115326721,0,-0.0311830279633937,0.124086044513336,0.0198703742942952,0.0304710732770152,0.0793645050922885,0,0.258350897424901,0,0,0.664624293568523,0.0500995519549829,-0.141929496582401,-0.253326341486756,0,0.885098731920182,0,0,0.504583263976923,0.0793645050922885,-0.0889243828034683,0,0,0.544545394674195,0,0,0.0396822525461442,0,0.0125591158097975,0,0,0,0,0,0,0,-0.276251532421517,-0.011811179886596,0,0.101833962114058,0,0,0,0,0,0,0,0.255761024149889,0.94100898009734,0.0054157083725279,0.40923712807342,0,0,0,0,0.0400376215964143,-0.123872057002435,0.146442146711949,-0.0524982014053433,0,0.0396822525461442,0,0,-0.0861409897892114,0,0,0,0.0396822525461442,0.0216340480386245,0.110167073030513,0,0,0,0.325929647139875,0,0,0,0,0.0793038648490247,0,0,0.282848273003921,0,0.094461388314282,-0.0815818795468414,0,-0.0659197004171417,0.506887545170039,0.911579534971235,0,0.146442146711949,-0.114904985077938,0,0.141103461459512,-0.391642640689308,0,0,0,0,0,0,0,0,0,0.16653779793583,0.102266103407491,0,0,0,0,0,0,0,0,0,0.0793645050922885,0.285166749941585,-0.0922240566585104,0.45323174736331,0,0,0,0,0,0,0.187087304632167,0.18242109105791,0,0,0,0,0,0,0,0,0.0608286040865977,0,0,0,0,0,0.107539845572378,0,0,0,0,0.135041822201277,0,0,0.228543291779001,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0439545809431593,0.184026730221266,0,0,0,0,0,0,0,0.0681888521237615,0,0.0793645050922885,0,0,-0.113884373708977,0,0,0,0.0416457619227929,0,0.588772454504097,0,0,0,0,0,0.0793645050922885,0.0396822525461442,0,0,0,0,0,0,0,0,0,0,0.207824806367562,0,0,0,-0.159032792259194,0,0,-0.00738266842607194,0,0,0.15690503401053,0,0,0,0,0,0,0.00834182851761715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00482420874105585,0,0,0,0,0,0,0,0.106574310546926,0,0,-0.0126683047082377,0,0,0,0,0.146442146711949,0,0.174725258077974,0.409659580134908,-0.0499565924579339,0,0,0,0.0734949395924895,0,0,0.0214332681139082,0.0793645050922885,0.188983636730988,0,0,0,0,0,0,0,0,0.893052333939219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262326602386696,0,0,0,0,0,0,0,0,0,0,0,0,0.102266103407491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788919626267023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.000653963176349942,0,0,0,-0.133721724564755,0,0,0,0,0,0,0.0793645050922885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0793645050922885,0,0,0,0.0793645050922885,0,0,0,0.311461858411929,0,0,0,0,0,0,0,0,0.204532206814983,0,0,0,0,0.156310131575929,0,-0.00501212713773866,0,0,0.0793645050922885,0,0,0,0,0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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.17E+10 | ||
|rna_weight_ug=24.4 | |rna_weight_ug=24.4 | ||
|rnaseq_library_id=SRhi10011.CGTACG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-2555 | |sample_cell_catalog=CC-2555 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.82192402465479e-216!GO:0005737;cytoplasm;2.05867460246833e-198!GO:0043226;organelle;1.01214892943368e-163!GO:0043229;intracellular organelle;3.49361891056278e-163!GO:0043231;intracellular membrane-bound organelle;1.07532236223932e-152!GO:0043227;membrane-bound organelle;1.16547067746012e-152!GO:0044444;cytoplasmic part;4.88157936946153e-136!GO:0044422;organelle part;2.53114478214064e-124!GO:0044446;intracellular organelle part;7.91640264917193e-123!GO:0032991;macromolecular complex;1.19994415826476e-79!GO:0005515;protein binding;1.14982095488742e-74!GO:0044238;primary metabolic process;1.01088956220517e-73!GO:0030529;ribonucleoprotein complex;7.22579309013905e-72!GO:0044237;cellular metabolic process;3.00141792065772e-71!GO:0043170;macromolecule metabolic process;1.40476002488164e-66!GO:0005739;mitochondrion;2.08189663561259e-58!GO:0043233;organelle lumen;2.82988893818104e-57!GO:0031974;membrane-enclosed lumen;2.82988893818104e-57!GO:0019538;protein metabolic process;3.91006448154462e-56!GO:0031090;organelle membrane;4.12595254633132e-56!GO:0003723;RNA binding;6.02282177592244e-56!GO:0044428;nuclear part;7.76326959117526e-50!GO:0044260;cellular macromolecule metabolic process;5.13966311930159e-49!GO:0044267;cellular protein metabolic process;5.92872720960274e-49!GO:0006412;translation;2.32419816395176e-48!GO:0005840;ribosome;5.79682759552948e-47!GO:0005634;nucleus;5.7475185499615e-46!GO:0015031;protein transport;1.45555559680186e-45!GO:0033036;macromolecule localization;1.56152095077831e-45!GO:0009058;biosynthetic process;1.90368976923123e-44!GO:0016043;cellular component organization and biogenesis;6.50772485317966e-43!GO:0045184;establishment of protein localization;7.49429624393015e-43!GO:0008104;protein localization;1.20681631138026e-42!GO:0003735;structural constituent of ribosome;9.02754693278445e-42!GO:0005829;cytosol;7.47208185783726e-41!GO:0009059;macromolecule biosynthetic process;1.82053424848617e-40!GO:0043234;protein complex;4.30735462497282e-40!GO:0044429;mitochondrial part;5.63583373087549e-40!GO:0044249;cellular biosynthetic process;2.09460775472478e-39!GO:0006396;RNA processing;3.66975744493705e-36!GO:0046907;intracellular transport;4.05797740400047e-36!GO:0033279;ribosomal subunit;4.98618564857141e-36!GO:0031967;organelle envelope;1.59268927908403e-34!GO:0031975;envelope;3.80025624679901e-34!GO:0031981;nuclear lumen;1.29399927051017e-32!GO:0043283;biopolymer metabolic process;6.16819931280057e-32!GO:0006886;intracellular protein transport;3.19595945872655e-30!GO:0010467;gene expression;1.7344203844943e-29!GO:0016071;mRNA metabolic process;2.90881303734095e-29!GO:0065003;macromolecular complex assembly;1.14022436072397e-28!GO:0008380;RNA splicing;2.84380701706199e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.85597798108384e-27!GO:0005740;mitochondrial envelope;7.17302232639975e-27!GO:0012505;endomembrane system;5.08665353894544e-26!GO:0022607;cellular component assembly;6.03019595685435e-26!GO:0043228;non-membrane-bound organelle;7.35139792610758e-26!GO:0043232;intracellular non-membrane-bound organelle;7.35139792610758e-26!GO:0031966;mitochondrial membrane;6.10929646216143e-25!GO:0044445;cytosolic part;8.77359551728231e-25!GO:0006397;mRNA processing;1.07458710485723e-24!GO:0006996;organelle organization and biogenesis;6.15456784625695e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.07280750513651e-23!GO:0051649;establishment of cellular localization;2.20868186187413e-23!GO:0051641;cellular localization;3.30963191049236e-23!GO:0005783;endoplasmic reticulum;3.5945384072115e-23!GO:0019866;organelle inner membrane;3.79458528323858e-23!GO:0005794;Golgi apparatus;7.4795090812169e-23!GO:0005743;mitochondrial inner membrane;7.54208710748097e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.55825523343828e-22!GO:0006119;oxidative phosphorylation;8.85817563855662e-21!GO:0005681;spliceosome;1.32363237122403e-19!GO:0005654;nucleoplasm;1.64506929276725e-19!GO:0044432;endoplasmic reticulum part;7.55432339082953e-19!GO:0015935;small ribosomal subunit;1.63212101269356e-18!GO:0006457;protein folding;1.70543842513548e-18!GO:0015934;large ribosomal subunit;2.41447894181548e-18!GO:0048770;pigment granule;4.97835106655672e-18!GO:0042470;melanosome;4.97835106655672e-18!GO:0044455;mitochondrial membrane part;1.32791223183343e-17!GO:0006512;ubiquitin cycle;4.73670201040508e-17!GO:0016874;ligase activity;8.79848664175333e-17!GO:0016462;pyrophosphatase activity;1.23316697436956e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.3011533528867e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.82191245253727e-16!GO:0043285;biopolymer catabolic process;2.11524092253132e-16!GO:0006605;protein targeting;2.54771076998225e-16!GO:0044451;nucleoplasm part;2.76125342472075e-16!GO:0017111;nucleoside-triphosphatase activity;6.00891716336007e-16!GO:0012501;programmed cell death;7.26390454083311e-16!GO:0031980;mitochondrial lumen;9.39212003818782e-16!GO:0005759;mitochondrial matrix;9.39212003818782e-16!GO:0006915;apoptosis;1.59499468864611e-15!GO:0043412;biopolymer modification;1.9083087355529e-15!GO:0022618;protein-RNA complex assembly;1.94464141196499e-15!GO:0044265;cellular macromolecule catabolic process;2.04573204126268e-15!GO:0016192;vesicle-mediated transport;2.55220726799181e-15!GO:0009057;macromolecule catabolic process;2.94446310557776e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.19973809051137e-15!GO:0005730;nucleolus;7.9309114205369e-15!GO:0048193;Golgi vesicle transport;7.9309114205369e-15!GO:0030163;protein catabolic process;9.14400083868336e-15!GO:0006464;protein modification process;9.33419134729795e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.62728745561696e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.10459518677687e-14!GO:0019941;modification-dependent protein catabolic process;1.38952851659184e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.38952851659184e-14!GO:0044257;cellular protein catabolic process;1.54291107932399e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.58023663687992e-14!GO:0000166;nucleotide binding;1.59640664068926e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.23884955635775e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.29732023521595e-14!GO:0051186;cofactor metabolic process;2.33199380630104e-14!GO:0005746;mitochondrial respiratory chain;2.346297742443e-14!GO:0005789;endoplasmic reticulum membrane;3.18634587188532e-14!GO:0008219;cell death;3.89210480361453e-14!GO:0016265;death;3.89210480361453e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.08433848274131e-13!GO:0003954;NADH dehydrogenase activity;1.08433848274131e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.08433848274131e-13!GO:0008134;transcription factor binding;1.18456663552871e-13!GO:0044248;cellular catabolic process;2.42936544014075e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.02643344253824e-13!GO:0051082;unfolded protein binding;4.20778259682191e-13!GO:0008135;translation factor activity, nucleic acid binding;4.90805250677779e-13!GO:0005761;mitochondrial ribosome;9.4948496202119e-13!GO:0000313;organellar ribosome;9.4948496202119e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.00771066917211e-12!GO:0044431;Golgi apparatus part;4.44002072041664e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.81260196910053e-12!GO:0042773;ATP synthesis coupled electron transport;5.81260196910053e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.50779650439289e-12!GO:0045271;respiratory chain complex I;6.50779650439289e-12!GO:0005747;mitochondrial respiratory chain complex I;6.50779650439289e-12!GO:0043687;post-translational protein modification;8.01529545490151e-12!GO:0006732;coenzyme metabolic process;8.44964610508189e-12!GO:0043067;regulation of programmed cell death;1.13232319786895e-11!GO:0042981;regulation of apoptosis;1.42361845860704e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.84510461738345e-11!GO:0006259;DNA metabolic process;3.08934400382182e-11!GO:0009055;electron carrier activity;3.44897325185356e-11!GO:0006461;protein complex assembly;4.17065328383626e-11!GO:0048523;negative regulation of cellular process;4.89936120923242e-11!GO:0016070;RNA metabolic process;1.93448029679375e-10!GO:0032553;ribonucleotide binding;1.95154620227265e-10!GO:0032555;purine ribonucleotide binding;1.95154620227265e-10!GO:0006913;nucleocytoplasmic transport;2.45315614206838e-10!GO:0008565;protein transporter activity;2.47300524391511e-10!GO:0003743;translation initiation factor activity;2.47773636171243e-10!GO:0006413;translational initiation;2.65274580008216e-10!GO:0008639;small protein conjugating enzyme activity;2.7151784192591e-10!GO:0007049;cell cycle;2.74382734950254e-10!GO:0019787;small conjugating protein ligase activity;3.62632229518127e-10!GO:0043069;negative regulation of programmed cell death;3.89841854198503e-10!GO:0004842;ubiquitin-protein ligase activity;4.58855855629857e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.04396501148957e-10!GO:0000375;RNA splicing, via transesterification reactions;5.04396501148957e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.04396501148957e-10!GO:0005793;ER-Golgi intermediate compartment;5.34268876861657e-10!GO:0017076;purine nucleotide binding;5.73033620733837e-10!GO:0051169;nuclear transport;5.73896795674686e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.4077856990387e-10!GO:0051246;regulation of protein metabolic process;6.93421201358348e-10!GO:0048519;negative regulation of biological process;7.7185643518466e-10!GO:0003676;nucleic acid binding;9.64198906397277e-10!GO:0043066;negative regulation of apoptosis;1.22830264841405e-09!GO:0000139;Golgi membrane;1.30339720543744e-09!GO:0048475;coated membrane;1.30339720543744e-09!GO:0030117;membrane coat;1.30339720543744e-09!GO:0006446;regulation of translational initiation;1.80488283875297e-09!GO:0009259;ribonucleotide metabolic process;2.33053355901358e-09!GO:0005768;endosome;2.59393989408759e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.76352107641002e-09!GO:0042254;ribosome biogenesis and assembly;2.85026434029602e-09!GO:0006916;anti-apoptosis;3.25976398420105e-09!GO:0009141;nucleoside triphosphate metabolic process;3.45469802155513e-09!GO:0009056;catabolic process;3.90125083155743e-09!GO:0016881;acid-amino acid ligase activity;4.12430874057647e-09!GO:0003924;GTPase activity;5.07832841009712e-09!GO:0009150;purine ribonucleotide metabolic process;5.55995344617608e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.62697951680752e-09!GO:0006163;purine nucleotide metabolic process;6.94530174333306e-09!GO:0030120;vesicle coat;8.09139468342552e-09!GO:0030662;coated vesicle membrane;8.09139468342552e-09!GO:0005635;nuclear envelope;8.22064848303303e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.00053326422124e-08!GO:0017038;protein import;1.09982619167636e-08!GO:0003712;transcription cofactor activity;1.10028322069496e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.60552900193777e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.60552900193777e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.97830850243636e-08!GO:0016604;nuclear body;2.09305965142068e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.47216385725563e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.47216385725563e-08!GO:0009260;ribonucleotide biosynthetic process;2.7453126681107e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.18931737441985e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.21294012234879e-08!GO:0051188;cofactor biosynthetic process;3.37101697557797e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.80314676125742e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.96997400780168e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.96997400780168e-08!GO:0015986;ATP synthesis coupled proton transport;4.0931519623764e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.0931519623764e-08!GO:0006164;purine nucleotide biosynthetic process;4.0931519623764e-08!GO:0007005;mitochondrion organization and biogenesis;4.82673647139758e-08!GO:0031965;nuclear membrane;4.86488767314224e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.26661046939671e-08!GO:0000074;regulation of progression through cell cycle;1.27010223435498e-07!GO:0050794;regulation of cellular process;1.38183681930508e-07!GO:0051726;regulation of cell cycle;1.41152148494697e-07!GO:0031988;membrane-bound vesicle;1.58503864431237e-07!GO:0006399;tRNA metabolic process;1.64990027333231e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.86716352333648e-07!GO:0005524;ATP binding;2.77782473849706e-07!GO:0044453;nuclear membrane part;2.85610870382214e-07!GO:0046034;ATP metabolic process;3.00759609677682e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.65501918491822e-07!GO:0016607;nuclear speck;3.76651216511255e-07!GO:0032559;adenyl ribonucleotide binding;4.26329305054274e-07!GO:0031252;leading edge;5.11851614185979e-07!GO:0006754;ATP biosynthetic process;6.72407970580966e-07!GO:0006753;nucleoside phosphate metabolic process;6.72407970580966e-07!GO:0019829;cation-transporting ATPase activity;6.94951810557291e-07!GO:0009108;coenzyme biosynthetic process;8.04803198069815e-07!GO:0022402;cell cycle process;9.03646562141213e-07!GO:0031982;vesicle;1.18021161894104e-06!GO:0005773;vacuole;1.25380980734665e-06!GO:0016887;ATPase activity;1.26389293994826e-06!GO:0030554;adenyl nucleotide binding;1.31962784787386e-06!GO:0006366;transcription from RNA polymerase II promoter;1.42584140431104e-06!GO:0005525;GTP binding;1.42779029860265e-06!GO:0044440;endosomal part;1.49991671290421e-06!GO:0010008;endosome membrane;1.49991671290421e-06!GO:0051170;nuclear import;1.55309839779542e-06!GO:0009060;aerobic respiration;1.60346267781536e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.64636979340652e-06!GO:0031410;cytoplasmic vesicle;1.70875043332501e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.78552864222773e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.78552864222773e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.78552864222773e-06!GO:0005770;late endosome;1.97903278669033e-06!GO:0009117;nucleotide metabolic process;2.35871595743994e-06!GO:0005798;Golgi-associated vesicle;2.40842549694672e-06!GO:0042623;ATPase activity, coupled;2.54341379357895e-06!GO:0016740;transferase activity;3.15544668428474e-06!GO:0043038;amino acid activation;3.30687177576485e-06!GO:0006418;tRNA aminoacylation for protein translation;3.30687177576485e-06!GO:0043039;tRNA aminoacylation;3.30687177576485e-06!GO:0032446;protein modification by small protein conjugation;3.44063941689041e-06!GO:0048522;positive regulation of cellular process;3.60868568935614e-06!GO:0045333;cellular respiration;3.70902426019132e-06!GO:0006606;protein import into nucleus;3.89542980732368e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.89542980732368e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.9031540898166e-06!GO:0016567;protein ubiquitination;4.21256357803888e-06!GO:0007243;protein kinase cascade;4.33157390911356e-06!GO:0065002;intracellular protein transport across a membrane;4.33811891967638e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.56939353090438e-06!GO:0006974;response to DNA damage stimulus;5.52335235017878e-06!GO:0045259;proton-transporting ATP synthase complex;6.1113775590002e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.19386665060154e-06!GO:0005643;nuclear pore;6.19386665060154e-06!GO:0016491;oxidoreductase activity;7.78323834417429e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.75243456281067e-06!GO:0006364;rRNA processing;9.00325664712151e-06!GO:0016072;rRNA metabolic process;9.59543085892915e-06!GO:0000323;lytic vacuole;1.02739813871845e-05!GO:0005764;lysosome;1.02739813871845e-05!GO:0005788;endoplasmic reticulum lumen;1.02739813871845e-05!GO:0006323;DNA packaging;1.0889872879892e-05!GO:0006752;group transfer coenzyme metabolic process;1.15700726028393e-05!GO:0016787;hydrolase activity;1.17735568040051e-05!GO:0043623;cellular protein complex assembly;1.19865645548163e-05!GO:0008654;phospholipid biosynthetic process;1.35987677481236e-05!GO:0005905;coated pit;1.45539488159746e-05!GO:0004386;helicase activity;1.47616915464466e-05!GO:0006099;tricarboxylic acid cycle;1.58196527194995e-05!GO:0046356;acetyl-CoA catabolic process;1.58196527194995e-05!GO:0008026;ATP-dependent helicase activity;1.67126860803702e-05!GO:0006793;phosphorus metabolic process;1.88016120035313e-05!GO:0006796;phosphate metabolic process;1.88016120035313e-05!GO:0030118;clathrin coat;2.00563140173322e-05!GO:0042802;identical protein binding;2.09857239947148e-05!GO:0006613;cotranslational protein targeting to membrane;2.52933394664805e-05!GO:0003714;transcription corepressor activity;2.5843174014586e-05!GO:0032561;guanyl ribonucleotide binding;2.79998734554662e-05!GO:0019001;guanyl nucleotide binding;2.79998734554662e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.00168488601331e-05!GO:0016853;isomerase activity;3.06244298126672e-05!GO:0009967;positive regulation of signal transduction;3.15798072587646e-05!GO:0045786;negative regulation of progression through cell cycle;3.270725666406e-05!GO:0050789;regulation of biological process;3.47616707122392e-05!GO:0007264;small GTPase mediated signal transduction;3.48729350629069e-05!GO:0000278;mitotic cell cycle;4.08570113629564e-05!GO:0051187;cofactor catabolic process;4.08570113629564e-05!GO:0008092;cytoskeletal protein binding;4.26684510628457e-05!GO:0006084;acetyl-CoA metabolic process;4.50101880925216e-05!GO:0004298;threonine endopeptidase activity;4.53288208247735e-05!GO:0016564;transcription repressor activity;5.16201602046751e-05!GO:0030867;rough endoplasmic reticulum membrane;5.30418287740069e-05!GO:0005762;mitochondrial large ribosomal subunit;5.75158337219802e-05!GO:0000315;organellar large ribosomal subunit;5.75158337219802e-05!GO:0006403;RNA localization;6.06737914778892e-05!GO:0050657;nucleic acid transport;6.26832761142296e-05!GO:0051236;establishment of RNA localization;6.26832761142296e-05!GO:0050658;RNA transport;6.26832761142296e-05!GO:0005667;transcription factor complex;6.32882797770427e-05!GO:0048468;cell development;6.71953098236297e-05!GO:0000245;spliceosome assembly;6.87233687360372e-05!GO:0016310;phosphorylation;7.10051064744542e-05!GO:0048471;perinuclear region of cytoplasm;8.19704159008688e-05!GO:0046930;pore complex;8.40711124151114e-05!GO:0016044;membrane organization and biogenesis;9.70047683977737e-05!GO:0019843;rRNA binding;0.000110305035313766!GO:0065004;protein-DNA complex assembly;0.000111222031356105!GO:0045454;cell redox homeostasis;0.000111222031356105!GO:0009109;coenzyme catabolic process;0.000119674394423079!GO:0005769;early endosome;0.000121318928239881!GO:0031324;negative regulation of cellular metabolic process;0.000125572595315344!GO:0001726;ruffle;0.000128092399768869!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00015508172536102!GO:0065009;regulation of a molecular function;0.000162473224495095!GO:0006612;protein targeting to membrane;0.000168141897700747!GO:0030119;AP-type membrane coat adaptor complex;0.000171036756673346!GO:0031968;organelle outer membrane;0.000172238629139974!GO:0051276;chromosome organization and biogenesis;0.000172975893995765!GO:0000151;ubiquitin ligase complex;0.000181655247801115!GO:0005048;signal sequence binding;0.000196220522623207!GO:0006281;DNA repair;0.000197102074043672!GO:0019867;outer membrane;0.000203799739193028!GO:0030029;actin filament-based process;0.000209154707978058!GO:0009892;negative regulation of metabolic process;0.000217464238483795!GO:0007010;cytoskeleton organization and biogenesis;0.000218367264094885!GO:0016563;transcription activator activity;0.00022339633815885!GO:0051427;hormone receptor binding;0.000232852602533626!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000237347915548637!GO:0016779;nucleotidyltransferase activity;0.000252018905650001!GO:0048518;positive regulation of biological process;0.000252514537394355!GO:0009719;response to endogenous stimulus;0.000253202361351989!GO:0016126;sterol biosynthetic process;0.000257709093915854!GO:0005741;mitochondrial outer membrane;0.0002613109491898!GO:0016859;cis-trans isomerase activity;0.000264252321111322!GO:0033116;ER-Golgi intermediate compartment membrane;0.00026914811003134!GO:0003724;RNA helicase activity;0.000286591641128307!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000299527292815275!GO:0030658;transport vesicle membrane;0.000303367939717061!GO:0030131;clathrin adaptor complex;0.000307022276916805!GO:0016568;chromatin modification;0.000307430831453708!GO:0051789;response to protein stimulus;0.000316606219533352!GO:0006986;response to unfolded protein;0.000316606219533352!GO:0003713;transcription coactivator activity;0.000324284239328392!GO:0008610;lipid biosynthetic process;0.000363435595474987!GO:0005885;Arp2/3 protein complex;0.000367451017581551!GO:0030133;transport vesicle;0.0004008658372434!GO:0005791;rough endoplasmic reticulum;0.000415379475121351!GO:0035257;nuclear hormone receptor binding;0.000427077055114844!GO:0043021;ribonucleoprotein binding;0.000461913767532715!GO:0008632;apoptotic program;0.000492832584575004!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000498915960556085!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000520791244265826!GO:0008250;oligosaccharyl transferase complex;0.000531269994448478!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000564013615096133!GO:0030132;clathrin coat of coated pit;0.000595731909538913!GO:0004576;oligosaccharyl transferase activity;0.000662007263269615!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000677573838422626!GO:0051252;regulation of RNA metabolic process;0.000717886766110622!GO:0019899;enzyme binding;0.00074294128012601!GO:0006333;chromatin assembly or disassembly;0.000769491401582444!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000797486220685878!GO:0006091;generation of precursor metabolites and energy;0.00080624963938473!GO:0000314;organellar small ribosomal subunit;0.000807216271085944!GO:0005763;mitochondrial small ribosomal subunit;0.000807216271085944!GO:0030660;Golgi-associated vesicle membrane;0.000812928892379683!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000824689742544782!GO:0051028;mRNA transport;0.000854606802744961!GO:0006979;response to oxidative stress;0.000892452102550369!GO:0006839;mitochondrial transport;0.000972242078546448!GO:0003697;single-stranded DNA binding;0.0009962488798196!GO:0030659;cytoplasmic vesicle membrane;0.00110557039200936!GO:0051920;peroxiredoxin activity;0.00110903064102972!GO:0015630;microtubule cytoskeleton;0.00113333495052116!GO:0043065;positive regulation of apoptosis;0.00113639651679936!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00120342782538828!GO:0006626;protein targeting to mitochondrion;0.00120615126279203!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125764550313934!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00128669248573982!GO:0043068;positive regulation of programmed cell death;0.00133508160116576!GO:0030027;lamellipodium;0.00144140589413523!GO:0007006;mitochondrial membrane organization and biogenesis;0.00146726295582174!GO:0051168;nuclear export;0.00148899263946433!GO:0018196;peptidyl-asparagine modification;0.00151463081493386!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00151463081493386!GO:0046467;membrane lipid biosynthetic process;0.0015493490222985!GO:0006695;cholesterol biosynthetic process;0.00155770604273789!GO:0016197;endosome transport;0.00161530068777746!GO:0009165;nucleotide biosynthetic process;0.00168764354138918!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00169808575223055!GO:0046474;glycerophospholipid biosynthetic process;0.00170100256204905!GO:0000785;chromatin;0.00176872052882169!GO:0043566;structure-specific DNA binding;0.00177444857056133!GO:0008361;regulation of cell size;0.00182598570774274!GO:0051101;regulation of DNA binding;0.00188976643595675!GO:0015980;energy derivation by oxidation of organic compounds;0.00188976643595675!GO:0003899;DNA-directed RNA polymerase activity;0.00189142277317121!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00191034921234249!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00191034921234249!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00191034921234249!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00191183333383575!GO:0043488;regulation of mRNA stability;0.00191183333383575!GO:0043487;regulation of RNA stability;0.00191183333383575!GO:0051128;regulation of cellular component organization and biogenesis;0.00195566666343391!GO:0030125;clathrin vesicle coat;0.00207794262163274!GO:0030665;clathrin coated vesicle membrane;0.00207794262163274!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0021117449641728!GO:0030663;COPI coated vesicle membrane;0.00214824098846114!GO:0030126;COPI vesicle coat;0.00214824098846114!GO:0006891;intra-Golgi vesicle-mediated transport;0.00218126873178361!GO:0006417;regulation of translation;0.00219128698407197!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00228392459616197!GO:0001558;regulation of cell growth;0.00239227277232561!GO:0006414;translational elongation;0.002414670556561!GO:0016049;cell growth;0.00241642431810854!GO:0044433;cytoplasmic vesicle part;0.00241642431810854!GO:0003729;mRNA binding;0.00255933309085794!GO:0016481;negative regulation of transcription;0.00273391038702619!GO:0048144;fibroblast proliferation;0.00279818371829191!GO:0048145;regulation of fibroblast proliferation;0.00279818371829191!GO:0006402;mRNA catabolic process;0.00307213490506261!GO:0030137;COPI-coated vesicle;0.00320362770200892!GO:0008186;RNA-dependent ATPase activity;0.00336093473534201!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00340015758894339!GO:0030176;integral to endoplasmic reticulum membrane;0.00341881346474287!GO:0030833;regulation of actin filament polymerization;0.00345869708579153!GO:0008637;apoptotic mitochondrial changes;0.00346567263600807!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00363882299222424!GO:0015399;primary active transmembrane transporter activity;0.00363882299222424!GO:0030134;ER to Golgi transport vesicle;0.00369363604554983!GO:0043681;protein import into mitochondrion;0.00383037431838895!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00389570799676463!GO:0006383;transcription from RNA polymerase III promoter;0.00391444495836073!GO:0045893;positive regulation of transcription, DNA-dependent;0.00400240324418821!GO:0006509;membrane protein ectodomain proteolysis;0.00403437620378568!GO:0033619;membrane protein proteolysis;0.00403437620378568!GO:0012506;vesicle membrane;0.00408359919587786!GO:0030031;cell projection biogenesis;0.00417043390153129!GO:0044262;cellular carbohydrate metabolic process;0.00437019790752973!GO:0051098;regulation of binding;0.00439627866135001!GO:0045045;secretory pathway;0.00443095368521246!GO:0015631;tubulin binding;0.00448111891196066!GO:0031902;late endosome membrane;0.0045352011788456!GO:0046489;phosphoinositide biosynthetic process;0.00458835353212071!GO:0048500;signal recognition particle;0.00492996634020403!GO:0050790;regulation of catalytic activity;0.00501413800991993!GO:0008139;nuclear localization sequence binding;0.00513982789660432!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00518377941154846!GO:0048487;beta-tubulin binding;0.00536470267623453!GO:0005813;centrosome;0.00536470267623453!GO:0030127;COPII vesicle coat;0.00548111073738742!GO:0012507;ER to Golgi transport vesicle membrane;0.00548111073738742!GO:0030880;RNA polymerase complex;0.00550464448015299!GO:0046822;regulation of nucleocytoplasmic transport;0.0056709407333462!GO:0048146;positive regulation of fibroblast proliferation;0.00583827505728007!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00588158095295951!GO:0006260;DNA replication;0.00591915712738456!GO:0015992;proton transport;0.00592844662194985!GO:0006818;hydrogen transport;0.00611650428110768!GO:0017166;vinculin binding;0.00654938414851448!GO:0000087;M phase of mitotic cell cycle;0.00661199461530977!GO:0045941;positive regulation of transcription;0.00664810579393633!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00673591365121776!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00673591365121776!GO:0006401;RNA catabolic process;0.00694851678272754!GO:0030521;androgen receptor signaling pathway;0.00720062176876116!GO:0016125;sterol metabolic process;0.00736906069007168!GO:0035258;steroid hormone receptor binding;0.00737269912840314!GO:0006917;induction of apoptosis;0.00745157383704149!GO:0006334;nucleosome assembly;0.00760641990715359!GO:0007265;Ras protein signal transduction;0.00763114727497281!GO:0005694;chromosome;0.00770453061135774!GO:0006650;glycerophospholipid metabolic process;0.00770859544024485!GO:0007067;mitosis;0.00802205220490148!GO:0004004;ATP-dependent RNA helicase activity;0.00804834874700492!GO:0019222;regulation of metabolic process;0.00820569150654199!GO:0006607;NLS-bearing substrate import into nucleus;0.00821222452376965!GO:0005774;vacuolar membrane;0.00826497918574426!GO:0043284;biopolymer biosynthetic process;0.00829208111251376!GO:0000059;protein import into nucleus, docking;0.00829208111251376!GO:0046519;sphingoid metabolic process;0.0083969336960402!GO:0008243;plasminogen activator activity;0.00866423376712845!GO:0065007;biological regulation;0.00872105899727921!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00872105899727921!GO:0006595;polyamine metabolic process;0.00891281965643177!GO:0008047;enzyme activator activity;0.00906274444894145!GO:0001666;response to hypoxia;0.0092210838306244!GO:0032507;maintenance of cellular protein localization;0.00930694157942543!GO:0031326;regulation of cellular biosynthetic process;0.00978738838033539!GO:0031072;heat shock protein binding;0.0097977146216065!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00989776358137279!GO:0045047;protein targeting to ER;0.00989776358137279!GO:0030032;lamellipodium biogenesis;0.00989776358137279!GO:0001836;release of cytochrome c from mitochondria;0.00990772196864928!GO:0012502;induction of programmed cell death;0.00998321670012772!GO:0006352;transcription initiation;0.010268919249698!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0106717049187833!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0108057340234541!GO:0000428;DNA-directed RNA polymerase complex;0.0108057340234541!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0115106436010052!GO:0007040;lysosome organization and biogenesis;0.0116590041736828!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0116897854390267!GO:0006897;endocytosis;0.0117919230529293!GO:0010324;membrane invagination;0.0117919230529293!GO:0005815;microtubule organizing center;0.0120446579344321!GO:0007050;cell cycle arrest;0.0122218732551174!GO:0009889;regulation of biosynthetic process;0.0122535052997254!GO:0031497;chromatin assembly;0.0124689014169245!GO:0005862;muscle thin filament tropomyosin;0.0125524775578086!GO:0005684;U2-dependent spliceosome;0.0125524775578086!GO:0006749;glutathione metabolic process;0.0125678586152339!GO:0016272;prefoldin complex;0.0129391789495689!GO:0006354;RNA elongation;0.0130599282346438!GO:0016251;general RNA polymerase II transcription factor activity;0.0136131910152573!GO:0051235;maintenance of localization;0.013786184392868!GO:0007242;intracellular signaling cascade;0.0138163977884282!GO:0005869;dynactin complex;0.0140454700969435!GO:0031529;ruffle organization and biogenesis;0.0143883638209101!GO:0003711;transcription elongation regulator activity;0.0147546854887477!GO:0032940;secretion by cell;0.0148075082997196!GO:0050750;low-density lipoprotein receptor binding;0.0149805984487106!GO:0031418;L-ascorbic acid binding;0.014995513386982!GO:0008033;tRNA processing;0.0150318736554582!GO:0045334;clathrin-coated endocytic vesicle;0.0163332482754547!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.016355497229609!GO:0043022;ribosome binding;0.0165072839905698!GO:0008629;induction of apoptosis by intracellular signals;0.0165400219571536!GO:0006643;membrane lipid metabolic process;0.0165865210907944!GO:0045185;maintenance of protein localization;0.0166098441145685!GO:0022890;inorganic cation transmembrane transporter activity;0.0166633327989817!GO:0030984;kininogen binding;0.0169177310132618!GO:0004213;cathepsin B activity;0.0169177310132618!GO:0044427;chromosomal part;0.0174129451089652!GO:0040008;regulation of growth;0.0174409474254349!GO:0008312;7S RNA binding;0.017714331809541!GO:0033673;negative regulation of kinase activity;0.017926882335558!GO:0006469;negative regulation of protein kinase activity;0.017926882335558!GO:0044452;nucleolar part;0.0192196958215406!GO:0030384;phosphoinositide metabolic process;0.0192708190512878!GO:0050681;androgen receptor binding;0.0192708190512878!GO:0030041;actin filament polymerization;0.0193726880210471!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0195004957874754!GO:0033043;regulation of organelle organization and biogenesis;0.0195004957874754!GO:0007034;vacuolar transport;0.0197063702349997!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0197800936879799!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0201873330330035!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0202019031582638!GO:0044437;vacuolar part;0.0202019031582638!GO:0007033;vacuole organization and biogenesis;0.0202019031582638!GO:0006672;ceramide metabolic process;0.0203471156473791!GO:0051651;maintenance of cellular localization;0.0204766718747506!GO:0031543;peptidyl-proline dioxygenase activity;0.0210958186399352!GO:0051087;chaperone binding;0.0212365348133358!GO:0000339;RNA cap binding;0.0216368256918282!GO:0008234;cysteine-type peptidase activity;0.0216680588350349!GO:0005765;lysosomal membrane;0.0219574553768528!GO:0005832;chaperonin-containing T-complex;0.0227962207329403!GO:0005149;interleukin-1 receptor binding;0.0227962207329403!GO:0051272;positive regulation of cell motility;0.0227963502370968!GO:0040017;positive regulation of locomotion;0.0227963502370968!GO:0016363;nuclear matrix;0.023267336618044!GO:0008180;signalosome;0.0232876325449282!GO:0051287;NAD binding;0.0233460428275216!GO:0044255;cellular lipid metabolic process;0.0234494745836297!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0235954903699593!GO:0046483;heterocycle metabolic process;0.0239264453031402!GO:0006892;post-Golgi vesicle-mediated transport;0.0243713049148994!GO:0008283;cell proliferation;0.0244232022338314!GO:0043492;ATPase activity, coupled to movement of substances;0.0255722504389071!GO:0005665;DNA-directed RNA polymerase II, core complex;0.02581290667303!GO:0035035;histone acetyltransferase binding;0.0261277869387089!GO:0051336;regulation of hydrolase activity;0.0261277869387089!GO:0022408;negative regulation of cell-cell adhesion;0.0263572255092534!GO:0000049;tRNA binding;0.0267903653422072!GO:0003746;translation elongation factor activity;0.0269354506572293!GO:0050178;phenylpyruvate tautomerase activity;0.0269354506572293!GO:0006611;protein export from nucleus;0.0271071373802425!GO:0051301;cell division;0.0271592836484522!GO:0051329;interphase of mitotic cell cycle;0.0273304432107951!GO:0051540;metal cluster binding;0.0275464769845576!GO:0051536;iron-sulfur cluster binding;0.0275464769845576!GO:0006950;response to stress;0.0275483586110987!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0280036331912363!GO:0045792;negative regulation of cell size;0.0280701832860152!GO:0031901;early endosome membrane;0.0283552283411901!GO:0009116;nucleoside metabolic process;0.028873805684088!GO:0006497;protein amino acid lipidation;0.0291366428490431!GO:0005856;cytoskeleton;0.0293529399847851!GO:0030140;trans-Golgi network transport vesicle;0.0293936640468179!GO:0000209;protein polyubiquitination;0.0293936640468179!GO:0051338;regulation of transferase activity;0.0294562484769575!GO:0042158;lipoprotein biosynthetic process;0.0301982260321879!GO:0006778;porphyrin metabolic process;0.0301982260321879!GO:0033013;tetrapyrrole metabolic process;0.0301982260321879!GO:0004674;protein serine/threonine kinase activity;0.0305074216586138!GO:0008426;protein kinase C inhibitor activity;0.0306826247569247!GO:0030308;negative regulation of cell growth;0.0308608362062118!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0309096033915306!GO:0022407;regulation of cell-cell adhesion;0.0313470388365243!GO:0022403;cell cycle phase;0.0318719151402044!GO:0051348;negative regulation of transferase activity;0.03188755687549!GO:0022406;membrane docking;0.0322443401791006!GO:0048278;vesicle docking;0.0322443401791006!GO:0019798;procollagen-proline dioxygenase activity;0.0335695059395759!GO:0043281;regulation of caspase activity;0.0336647107354855!GO:0031301;integral to organelle membrane;0.0338183068610639!GO:0030518;steroid hormone receptor signaling pathway;0.0339503866829796!GO:0045892;negative regulation of transcription, DNA-dependent;0.0353444449811113!GO:0031625;ubiquitin protein ligase binding;0.0353444449811113!GO:0032984;macromolecular complex disassembly;0.0356145416492839!GO:0006506;GPI anchor biosynthetic process;0.0356186957171945!GO:0043624;cellular protein complex disassembly;0.0357055414813462!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0359977088652652!GO:0015002;heme-copper terminal oxidase activity;0.0359977088652652!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0359977088652652!GO:0004129;cytochrome-c oxidase activity;0.0359977088652652!GO:0008154;actin polymerization and/or depolymerization;0.0359977088652652!GO:0045936;negative regulation of phosphate metabolic process;0.0359977088652652!GO:0009966;regulation of signal transduction;0.0359977088652652!GO:0033559;unsaturated fatty acid metabolic process;0.0359977088652652!GO:0006636;unsaturated fatty acid biosynthetic process;0.0359977088652652!GO:0008538;proteasome activator activity;0.0367253531699536!GO:0005637;nuclear inner membrane;0.0368916016097074!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0373602687717575!GO:0030911;TPR domain binding;0.0373637252175251!GO:0051881;regulation of mitochondrial membrane potential;0.0375751306968961!GO:0006007;glucose catabolic process;0.0379190932169224!GO:0005758;mitochondrial intermembrane space;0.0382800697390762!GO:0006066;alcohol metabolic process;0.0393341358554064!GO:0006904;vesicle docking during exocytosis;0.0393580381276249!GO:0004680;casein kinase activity;0.0394998516336928!GO:0006405;RNA export from nucleus;0.0401079531735936!GO:0030100;regulation of endocytosis;0.0406122075804222!GO:0016485;protein processing;0.0406122075804222!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0407836208332307!GO:0005669;transcription factor TFIID complex;0.0408577566488823!GO:0032594;protein transport within lipid bilayer;0.040890672635778!GO:0032907;transforming growth factor-beta3 production;0.040890672635778!GO:0032596;protein transport into lipid raft;0.040890672635778!GO:0032910;regulation of transforming growth factor-beta3 production;0.040890672635778!GO:0032595;B cell receptor transport within lipid bilayer;0.040890672635778!GO:0033606;chemokine receptor transport within lipid bilayer;0.040890672635778!GO:0032600;chemokine receptor transport out of lipid raft;0.040890672635778!GO:0032599;protein transport out of lipid raft;0.040890672635778!GO:0032597;B cell receptor transport into lipid raft;0.040890672635778!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.040890672635778!GO:0031371;ubiquitin conjugating enzyme complex;0.040890672635778!GO:0008022;protein C-terminus binding;0.040890672635778!GO:0006769;nicotinamide metabolic process;0.040890672635778!GO:0051100;negative regulation of binding;0.040890672635778!GO:0001952;regulation of cell-matrix adhesion;0.040890672635778!GO:0003779;actin binding;0.040890672635778!GO:0003690;double-stranded DNA binding;0.0410186093467051!GO:0030128;clathrin coat of endocytic vesicle;0.0411842971271164!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0411842971271164!GO:0030122;AP-2 adaptor complex;0.0411842971271164!GO:0042168;heme metabolic process;0.0414220820297626!GO:0032906;transforming growth factor-beta2 production;0.0414220820297626!GO:0032909;regulation of transforming growth factor-beta2 production;0.0414220820297626!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0414220820297626!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0414220820297626!GO:0033130;acetylcholine receptor binding;0.0414278814735439!GO:0043154;negative regulation of caspase activity;0.0418448455957862!GO:0008601;protein phosphatase type 2A regulator activity;0.0421790431835211!GO:0006505;GPI anchor metabolic process;0.0427711702201386!GO:0005784;translocon complex;0.0430903622821625!GO:0031970;organelle envelope lumen;0.0431593283378488!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0435963122160972!GO:0016408;C-acyltransferase activity;0.044177873665715!GO:0008320;protein transmembrane transporter activity;0.0445312617986244!GO:0051052;regulation of DNA metabolic process;0.044674441811545!GO:0045767;regulation of anti-apoptosis;0.0447261071081002!GO:0006740;NADPH regeneration;0.0450296395862429!GO:0006098;pentose-phosphate shunt;0.0450296395862429!GO:0030145;manganese ion binding;0.0450836554990656!GO:0043549;regulation of kinase activity;0.0454645394939682!GO:0005912;adherens junction;0.0456793353971129!GO:0016791;phosphoric monoester hydrolase activity;0.0457198330300216!GO:0006733;oxidoreduction coenzyme metabolic process;0.0474631229891093!GO:0004197;cysteine-type endopeptidase activity;0.0474631229891093!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0478418797230187!GO:0051325;interphase;0.0479938923908228!GO:0005874;microtubule;0.0479938923908228!GO:0022884;macromolecule transmembrane transporter activity;0.0480057231379729!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0480057231379729!GO:0051059;NF-kappaB binding;0.0480057231379729!GO:0030433;ER-associated protein catabolic process;0.0482002234204543!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0482002234204543!GO:0051270;regulation of cell motility;0.0482532339381595!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0483262049163004!GO:0008203;cholesterol metabolic process;0.0486626616332629!GO:0006458;'de novo' protein folding;0.0489324316702449!GO:0051084;'de novo' posttranslational protein folding;0.0489324316702449!GO:0006376;mRNA splice site selection;0.0491365619979355!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0491365619979355!GO:0031124;mRNA 3'-end processing;0.0493004408690253!GO:0003756;protein disulfide isomerase activity;0.0495721640266909!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0495721640266909!GO:0000159;protein phosphatase type 2A complex;0.0496001886963717!GO:0007041;lysosomal transport;0.049700100280411!GO:0007030;Golgi organization and biogenesis;0.0497832126932164!GO:0042987;amyloid precursor protein catabolic process;0.0499178703305964 | |||
|sample_id=11331 | |sample_id=11331 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=prostate | |sample_tissue=prostate | ||
|top_motifs=TP53:2.91090196525;TBX4,5:2.60540374091;TEF:2.07981557944;NKX2-2,8:2.0028848472;SPZ1:1.82610293288;UFEwm:1.81743271951;PPARG:1.80239491092;RXR{A,B,G}:1.66803238458;ZEB1:1.61279321796;TFCP2:1.48722312883;TEAD1:1.41100992117;HIF1A:1.37945215529;SNAI1..3:1.3467294699;PAX1,9:1.29284183126;ZBTB6:1.2908201128;ZIC1..3:1.1998219749;ONECUT1,2:1.0786383691;ARID5B:1.0753411382;EBF1:1.03971731634;HMX1:1.03765813081;ZNF238:0.975658396541;MYOD1:0.955441769489;HOX{A4,D4}:0.939649257136;XCPE1{core}:0.855870215295;ZNF148:0.837896605078;HAND1,2:0.826869327932;GZF1:0.81210449238;HSF1,2:0.811204099123;SP1:0.795657172715;NKX3-2:0.733242767176;TFAP2{A,C}:0.708979852091;MAZ:0.702278068832;FOXL1:0.697048237464;NKX2-3_NKX2-5:0.693496222254;IKZF1:0.681664910973;ZNF423:0.614788611854;LMO2:0.582733634709;SMAD1..7,9:0.495791169109;GLI1..3:0.465371711706;TOPORS:0.458464483045;EVI1:0.432595867123;ESR1:0.422715907125;TBP:0.414381645092;MTF1:0.402400992957;KLF4:0.390052173801;T:0.38991617836;NR1H4:0.37268423978;REST:0.369325286014;FOXM1:0.357294554179;FOSL2:0.339301520654;NR5A1,2:0.327449440848;ELK1,4_GABP{A,B1}:0.298064978796;GTF2A1,2:0.276240298062;SOX17:0.274238247697;BACH2:0.268933989269;FOS_FOS{B,L1}_JUN{B,D}:0.261923400155;POU3F1..4:0.232319540873;SOX2:0.229058429466;TFAP2B:0.225497450516;TFAP4:0.220707444913;RXRA_VDR{dimer}:0.220033935444;NR3C1:0.215623287588;FOXQ1:0.211195595787;bHLH_family:0.205954966247;ADNP_IRX_SIX_ZHX:0.175874509858;ALX4:0.169761731225;HOXA9_MEIS1:0.160733265244;MTE{core}:0.141533601609;HIC1:0.12785581097;ZNF143:0.119299952989;PAX5:0.104901585909;GFI1B:0.101884836212;LEF1_TCF7_TCF7L1,2:0.0772539026858;AR:0.0670571695073;NR6A1:0.0429049878974;FOXN1:0.0404152659016;TLX1..3_NFIC{dimer}:0.0401810360719;NFE2L1:0.0238193456338;VSX1,2:0.0104250268257;POU6F1:0.00465673299144;STAT5{A,B}:-0.0213242519949;GTF2I:-0.0352185607162;EN1,2:-0.0587258330503;FOXO1,3,4:-0.0692459495543;NKX2-1,4:-0.0773797182983;ATF6:-0.0785638346387;CDC5L:-0.0860416062568;HMGA1,2:-0.0890559108127;POU1F1:-0.0911157304368;HLF:-0.0991219503495;MED-1{core}:-0.112260494712;NFIL3:-0.123087654575;PAX2:-0.13219487665;PITX1..3:-0.135432135687;ZFP161:-0.159832097794;HNF4A_NR2F1,2:-0.168695324861;NHLH1,2:-0.181954867671;MYFfamily:-0.196466964683;PAX4:-0.205365098388;NRF1:-0.216338746324;NFE2:-0.218614720704;GCM1,2:-0.22421925507;POU2F1..3:-0.225428969633;HNF1A:-0.242523758678;TLX2:-0.269059433759;EP300:-0.272159506481;JUN:-0.289696991121;NFKB1_REL_RELA:-0.293583609555;MYBL2:-0.346855747629;MAFB:-0.350139729858;PRDM1:-0.357604661912;IRF7:-0.360065218876;CEBPA,B_DDIT3:-0.363964258488;LHX3,4:-0.36399137055;PAX8:-0.372604562977;GATA4:-0.383078896369;NKX6-1,2:-0.39932360747;SPI1:-0.409630879123;RREB1:-0.411032284017;ZBTB16:-0.413516735982;IKZF2:-0.429354774046;ESRRA:-0.444353535317;ETS1,2:-0.445711151006;EGR1..3:-0.462565357569;AIRE:-0.465653346795;SRF:-0.473621997232;SPIB:-0.49430910443;OCT4_SOX2{dimer}:-0.497852624596;PATZ1:-0.527221198896;FOXP1:-0.535693301833;SREBF1,2:-0.552714307842;TFDP1:-0.558538796234;ELF1,2,4:-0.565215406029;HOX{A5,B5}:-0.578314609323;RBPJ:-0.59463126555;STAT2,4,6:-0.594696897904;CRX:-0.597476905986;HES1:-0.598850120808;RUNX1..3:-0.620463514829;NFE2L2:-0.63011981746;RFX1:-0.653552910733;YY1:-0.6601205632;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.663188305893;PDX1:-0.676645664038;MZF1:-0.681842886858;FOX{F1,F2,J1}:-0.683668778799;ATF5_CREB3:-0.693095724209;PAX6:-0.693925199759;NKX3-1:-0.709155734444;NANOG{mouse}:-0.743667356639;FOX{D1,D2}:-0.744205377943;BPTF:-0.744251408257;RFX2..5_RFXANK_RFXAP:-0.760223147758;NFIX:-0.763975730681;ATF2:-0.768839798271;DMAP1_NCOR{1,2}_SMARC:-0.788128770331;ZNF384:-0.811383418053;IRF1,2:-0.811885177033;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.818260150261;SOX{8,9,10}:-0.834370386304;ATF4:-0.862843290867;GATA6:-0.869453911664;MEF2{A,B,C,D}:-0.882393312104;DBP:-0.937740934508;CREB1:-0.963574433849;NFATC1..3:-0.970888166785;STAT1,3:-0.976726709414;GFI1:-0.985646908278;NFY{A,B,C}:-0.985951855391;MYB:-0.989754795621;NANOG:-1.00229727443;FOXD3:-1.01828466386;FOX{I1,J2}:-1.03384494745;E2F1..5:-1.05184326298;FOXP3:-1.11310579582;PAX3,7:-1.16262067149;FOXA2:-1.20147632581;CUX2:-1.24092563966;TGIF1:-1.24143270166;HBP1_HMGB_SSRP1_UBTF:-1.2542054363;TAL1_TCF{3,4,12}:-1.2613457748;PBX1:-1.30349304198;AHR_ARNT_ARNT2:-1.36324345157;RORA:-1.39358165811;BREu{core}:-1.39380408863;XBP1:-1.43561822392;HOX{A6,A7,B6,B7}:-1.46008787773;POU5F1:-1.56087936711;CDX1,2,4:-1.60360320972;SOX5:-1.64299021233;PRRX1,2:-1.68112595943;ALX1:-1.83730626492 | |top_motifs=TP53:2.91090196525;TBX4,5:2.60540374091;TEF:2.07981557944;NKX2-2,8:2.0028848472;SPZ1:1.82610293288;UFEwm:1.81743271951;PPARG:1.80239491092;RXR{A,B,G}:1.66803238458;ZEB1:1.61279321796;TFCP2:1.48722312883;TEAD1:1.41100992117;HIF1A:1.37945215529;SNAI1..3:1.3467294699;PAX1,9:1.29284183126;ZBTB6:1.2908201128;ZIC1..3:1.1998219749;ONECUT1,2:1.0786383691;ARID5B:1.0753411382;EBF1:1.03971731634;HMX1:1.03765813081;ZNF238:0.975658396541;MYOD1:0.955441769489;HOX{A4,D4}:0.939649257136;XCPE1{core}:0.855870215295;ZNF148:0.837896605078;HAND1,2:0.826869327932;GZF1:0.81210449238;HSF1,2:0.811204099123;SP1:0.795657172715;NKX3-2:0.733242767176;TFAP2{A,C}:0.708979852091;MAZ:0.702278068832;FOXL1:0.697048237464;NKX2-3_NKX2-5:0.693496222254;IKZF1:0.681664910973;ZNF423:0.614788611854;LMO2:0.582733634709;SMAD1..7,9:0.495791169109;GLI1..3:0.465371711706;TOPORS:0.458464483045;EVI1:0.432595867123;ESR1:0.422715907125;TBP:0.414381645092;MTF1:0.402400992957;KLF4:0.390052173801;T:0.38991617836;NR1H4:0.37268423978;REST:0.369325286014;FOXM1:0.357294554179;FOSL2:0.339301520654;NR5A1,2:0.327449440848;ELK1,4_GABP{A,B1}:0.298064978796;GTF2A1,2:0.276240298062;SOX17:0.274238247697;BACH2:0.268933989269;FOS_FOS{B,L1}_JUN{B,D}:0.261923400155;POU3F1..4:0.232319540873;SOX2:0.229058429466;TFAP2B:0.225497450516;TFAP4:0.220707444913;RXRA_VDR{dimer}:0.220033935444;NR3C1:0.215623287588;FOXQ1:0.211195595787;bHLH_family:0.205954966247;ADNP_IRX_SIX_ZHX:0.175874509858;ALX4:0.169761731225;HOXA9_MEIS1:0.160733265244;MTE{core}:0.141533601609;HIC1:0.12785581097;ZNF143:0.119299952989;PAX5:0.104901585909;GFI1B:0.101884836212;LEF1_TCF7_TCF7L1,2:0.0772539026858;AR:0.0670571695073;NR6A1:0.0429049878974;FOXN1:0.0404152659016;TLX1..3_NFIC{dimer}:0.0401810360719;NFE2L1:0.0238193456338;VSX1,2:0.0104250268257;POU6F1:0.00465673299144;STAT5{A,B}:-0.0213242519949;GTF2I:-0.0352185607162;EN1,2:-0.0587258330503;FOXO1,3,4:-0.0692459495543;NKX2-1,4:-0.0773797182983;ATF6:-0.0785638346387;CDC5L:-0.0860416062568;HMGA1,2:-0.0890559108127;POU1F1:-0.0911157304368;HLF:-0.0991219503495;MED-1{core}:-0.112260494712;NFIL3:-0.123087654575;PAX2:-0.13219487665;PITX1..3:-0.135432135687;ZFP161:-0.159832097794;HNF4A_NR2F1,2:-0.168695324861;NHLH1,2:-0.181954867671;MYFfamily:-0.196466964683;PAX4:-0.205365098388;NRF1:-0.216338746324;NFE2:-0.218614720704;GCM1,2:-0.22421925507;POU2F1..3:-0.225428969633;HNF1A:-0.242523758678;TLX2:-0.269059433759;EP300:-0.272159506481;JUN:-0.289696991121;NFKB1_REL_RELA:-0.293583609555;MYBL2:-0.346855747629;MAFB:-0.350139729858;PRDM1:-0.357604661912;IRF7:-0.360065218876;CEBPA,B_DDIT3:-0.363964258488;LHX3,4:-0.36399137055;PAX8:-0.372604562977;GATA4:-0.383078896369;NKX6-1,2:-0.39932360747;SPI1:-0.409630879123;RREB1:-0.411032284017;ZBTB16:-0.413516735982;IKZF2:-0.429354774046;ESRRA:-0.444353535317;ETS1,2:-0.445711151006;EGR1..3:-0.462565357569;AIRE:-0.465653346795;SRF:-0.473621997232;SPIB:-0.49430910443;OCT4_SOX2{dimer}:-0.497852624596;PATZ1:-0.527221198896;FOXP1:-0.535693301833;SREBF1,2:-0.552714307842;TFDP1:-0.558538796234;ELF1,2,4:-0.565215406029;HOX{A5,B5}:-0.578314609323;RBPJ:-0.59463126555;STAT2,4,6:-0.594696897904;CRX:-0.597476905986;HES1:-0.598850120808;RUNX1..3:-0.620463514829;NFE2L2:-0.63011981746;RFX1:-0.653552910733;YY1:-0.6601205632;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.663188305893;PDX1:-0.676645664038;MZF1:-0.681842886858;FOX{F1,F2,J1}:-0.683668778799;ATF5_CREB3:-0.693095724209;PAX6:-0.693925199759;NKX3-1:-0.709155734444;NANOG{mouse}:-0.743667356639;FOX{D1,D2}:-0.744205377943;BPTF:-0.744251408257;RFX2..5_RFXANK_RFXAP:-0.760223147758;NFIX:-0.763975730681;ATF2:-0.768839798271;DMAP1_NCOR{1,2}_SMARC:-0.788128770331;ZNF384:-0.811383418053;IRF1,2:-0.811885177033;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.818260150261;SOX{8,9,10}:-0.834370386304;ATF4:-0.862843290867;GATA6:-0.869453911664;MEF2{A,B,C,D}:-0.882393312104;DBP:-0.937740934508;CREB1:-0.963574433849;NFATC1..3:-0.970888166785;STAT1,3:-0.976726709414;GFI1:-0.985646908278;NFY{A,B,C}:-0.985951855391;MYB:-0.989754795621;NANOG:-1.00229727443;FOXD3:-1.01828466386;FOX{I1,J2}:-1.03384494745;E2F1..5:-1.05184326298;FOXP3:-1.11310579582;PAX3,7:-1.16262067149;FOXA2:-1.20147632581;CUX2:-1.24092563966;TGIF1:-1.24143270166;HBP1_HMGB_SSRP1_UBTF:-1.2542054363;TAL1_TCF{3,4,12}:-1.2613457748;PBX1:-1.30349304198;AHR_ARNT_ARNT2:-1.36324345157;RORA:-1.39358165811;BREu{core}:-1.39380408863;XBP1:-1.43561822392;HOX{A6,A7,B6,B7}:-1.46008787773;POU5F1:-1.56087936711;CDX1,2,4:-1.60360320972;SOX5:-1.64299021233;PRRX1,2:-1.68112595943;ALX1:-1.83730626492 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11331-117E8;search_select_hide=table117:FF:11331-117E8 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Prostate Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11972 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11972
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11972
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.899 |
| 10 | 10 | 0.213 |
| 100 | 100 | 0.85 |
| 101 | 101 | 0.0861 |
| 102 | 102 | 0.253 |
| 103 | 103 | 0.173 |
| 104 | 104 | 0.663 |
| 105 | 105 | 0.82 |
| 106 | 106 | 0.037 |
| 107 | 107 | 0.176 |
| 108 | 108 | 0.0344 |
| 109 | 109 | 0.0475 |
| 11 | 11 | 0.613 |
| 110 | 110 | 0.415 |
| 111 | 111 | 0.43 |
| 112 | 112 | 0.202 |
| 113 | 113 | 0.758 |
| 114 | 114 | 0.32 |
| 115 | 115 | 0.0189 |
| 116 | 116 | 0.42 |
| 117 | 117 | 0.443 |
| 118 | 118 | 0.914 |
| 119 | 119 | 0.826 |
| 12 | 12 | 0.215 |
| 120 | 120 | 0.00933 |
| 121 | 121 | 0.824 |
| 122 | 122 | 0.758 |
| 123 | 123 | 0.336 |
| 124 | 124 | 0.151 |
| 125 | 125 | 0.168 |
| 126 | 126 | 0.83 |
| 127 | 127 | 0.62 |
| 128 | 128 | 0.206 |
| 129 | 129 | 0.0859 |
| 13 | 13 | 0.469 |
| 130 | 130 | 0.0559 |
| 131 | 131 | 0.965 |
| 132 | 132 | 0.14 |
| 133 | 133 | 0.107 |
| 134 | 134 | 0.152 |
| 135 | 135 | 0.632 |
| 136 | 136 | 0.0406 |
| 137 | 137 | 0.03 |
| 138 | 138 | 0.982 |
| 139 | 139 | 0.707 |
| 14 | 14 | 0.992 |
| 140 | 140 | 0.126 |
| 141 | 141 | 0.95 |
| 142 | 142 | 0.885 |
| 143 | 143 | 0.998 |
| 144 | 144 | 0.549 |
| 145 | 145 | 0.583 |
| 146 | 146 | 0.44 |
| 147 | 147 | 0.549 |
| 148 | 148 | 0.995 |
| 149 | 149 | 0.255 |
| 15 | 15 | 0.638 |
| 150 | 150 | 0.227 |
| 151 | 151 | 0.276 |
| 152 | 152 | 0.00355 |
| 153 | 153 | 0.981 |
| 154 | 154 | 0.755 |
| 155 | 155 | 0.802 |
| 156 | 156 | 0.638 |
| 157 | 157 | 0.627 |
| 158 | 158 | 0.0477 |
| 159 | 159 | 0.75 |
| 16 | 16 | 0.0271 |
| 160 | 160 | 0.951 |
| 161 | 161 | 0.821 |
| 162 | 162 | 0.327 |
| 163 | 163 | 0.944 |
| 164 | 164 | 0.479 |
| 165 | 165 | 0.82 |
| 166 | 166 | 0.574 |
| 167 | 167 | 0.214 |
| 168 | 168 | 0.377 |
| 169 | 169 | 0.102 |
| 17 | 17 | 0.335 |
| 18 | 18 | 0.7 |
| 19 | 19 | 0.502 |
| 2 | 2 | 0.0243 |
| 20 | 20 | 0.736 |
| 21 | 21 | 0.816 |
| 22 | 22 | 0.592 |
| 23 | 23 | 0.385 |
| 24 | 24 | 0.132 |
| 25 | 25 | 0.536 |
| 26 | 26 | 0.902 |
| 27 | 27 | 0.279 |
| 28 | 28 | 0.823 |
| 29 | 29 | 0.366 |
| 3 | 3 | 0.515 |
| 30 | 30 | 0.172 |
| 31 | 31 | 0.609 |
| 32 | 32 | 0.414 |
| 33 | 33 | 0.383 |
| 34 | 34 | 0.53 |
| 35 | 35 | 0.386 |
| 36 | 36 | 0.0473 |
| 37 | 37 | 0.127 |
| 38 | 38 | 0.764 |
| 39 | 39 | 0.219 |
| 4 | 4 | 0.681 |
| 40 | 40 | 0.421 |
| 41 | 41 | 0.505 |
| 42 | 42 | 0.665 |
| 43 | 43 | 0.863 |
| 44 | 44 | 0.0494 |
| 45 | 45 | 0.223 |
| 46 | 46 | 0.721 |
| 47 | 47 | 0.486 |
| 48 | 48 | 0.366 |
| 49 | 49 | 0.237 |
| 5 | 5 | 0.664 |
| 50 | 50 | 0.619 |
| 51 | 51 | 0.894 |
| 52 | 52 | 0.256 |
| 53 | 53 | 0.168 |
| 54 | 54 | 0.734 |
| 55 | 55 | 0.35 |
| 56 | 56 | 0.736 |
| 57 | 57 | 0.966 |
| 58 | 58 | 0.782 |
| 59 | 59 | 0.104 |
| 6 | 6 | 0.279 |
| 60 | 60 | 0.403 |
| 61 | 61 | 0.987 |
| 62 | 62 | 0.693 |
| 63 | 63 | 0.227 |
| 64 | 64 | 0.906 |
| 65 | 65 | 0.577 |
| 66 | 66 | 0.431 |
| 67 | 67 | 0.525 |
| 68 | 68 | 0.338 |
| 69 | 69 | 0.145 |
| 7 | 7 | 0.864 |
| 70 | 70 | 0.0348 |
| 71 | 71 | 0.863 |
| 72 | 72 | 0.868 |
| 73 | 73 | 0.00175 |
| 74 | 74 | 0.0246 |
| 75 | 75 | 0.478 |
| 76 | 76 | 0.966 |
| 77 | 77 | 0.00552 |
| 78 | 78 | 0.0622 |
| 79 | 79 | 0.105 |
| 8 | 8 | 0.464 |
| 80 | 80 | 0.0802 |
| 81 | 81 | 0.684 |
| 82 | 82 | 0.25 |
| 83 | 83 | 0.0811 |
| 84 | 84 | 0.606 |
| 85 | 85 | 0.146 |
| 86 | 86 | 0.736 |
| 87 | 87 | 0.00754 |
| 88 | 88 | 0.652 |
| 89 | 89 | 0.0215 |
| 9 | 9 | 0.686 |
| 90 | 90 | 0.578 |
| 91 | 91 | 0.367 |
| 92 | 92 | 0.534 |
| 93 | 93 | 0.578 |
| 94 | 94 | 0.303 |
| 95 | 95 | 0.068 |
| 96 | 96 | 0.605 |
| 97 | 97 | 0.634 |
| 98 | 98 | 0.781 |
| 99 | 99 | 0.0397 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11972
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
