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(Created page with "{{f5samples |id=FF:11331-117E8 |name=Prostate Epithelial Cells, donor2 |sample_id=11331 |rna_tube_id=117E8 |rna_box=117 |rna_position=E8 |sample_cell_lot=lot:7F3603 |s...")
 
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{{f5samples
{{f5samples
|id=FF:11331-117E8
|DRA_sample_Accession=CAGE@SAMD00005117
|name=Prostate Epithelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005117
|sample_id=11331
|accession_numbers=CAGE;DRX008420;DRR009292;DRZ000717;DRZ002102;DRZ012067;DRZ013452
|rna_tube_id=117E8
|accession_numbers_RNASeq=sRNA-Seq;DRX037180;DRR041546;DRZ007188
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|rna_position=E8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231
|sample_cell_lot=lot:7F3603
|sample_cell_catalog=CC-2555
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=prostate
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=24.40000
|rna_concentration=0.97000
|sample_note=
|profile_hcage=CNhs11972,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10011,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000548,CL:0002076,CL:0002231,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000079,UBERON:0000119,UBERON:0000161,UBERON:0000162,UBERON:0000163,UBERON:0000164,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000990,UBERON:0001007,UBERON:0001046,UBERON:0001062,UBERON:0001353,UBERON:0001555,UBERON:0002050,UBERON:0002367,UBERON:0002530,UBERON:0002532,UBERON:0003064,UBERON:0003101,UBERON:0003104,UBERON:0003353,UBERON:0003820,UBERON:0003929,UBERON:0003937,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004122,UBERON:0004185,UBERON:0004902,UBERON:0004921,UBERON:0005153,UBERON:0005156,UBERON:0005291,UBERON:0005399,UBERON:0005423,UBERON:0005911,UBERON:0006866,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000145
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.35!225.17!SOX15;;chr1:6479968..6479986,-!p1@HES2!2.22!165.82!HES2;;chr11:34642612..34642646,+!p1@EHF!2.13!132.53!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.07!130.93!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.97!92.83!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.71!50.73!TP63;;chr12:54785054..54785072,-!p4@ZNF385A!1.70!55.14!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.70!48.72!ZBED2;;chr17:7492684..7492778,-!p2@SOX15!1.67!95.04!SOX15;;chr15:83953397..83953425,-!p1@BNC1!1.66!51.33!BNC1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!58.55!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.71!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.53!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.43!25.66!HOXD11;;chr11:34645791..34645836,+!p3@EHF!1.37!22.66!EHF;;chr6:34524093..34524135,-!p1@SPDEF!1.32!19.85!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!1.31!23.26!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!1.28!18.25!FOXA1;;chr19:9811347..9811351,-!p1@ZNF812!1.26!17.24!ZNF812;;chr12:66218836..66218888,+!p1@HMGA2!1.23!147.17!HMGA2;;chr2:176969179..176969226,+!p2@HOXD11!1.23!16.04!HOXD11;;chr11:34642656..34642667,+!p2@EHF!1.23!15.84!EHF;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!20.05!TFAP2C;;chr11:65686802..65686818,+!p6@DRAP1!1.19!24.86!DRAP1;;chr6:34524049..34524089,-!p2@SPDEF!1.17!13.63!SPDEF;;chr10:8096772..8096787,+!p2@GATA3!1.16!16.04!GATA3;;chr17:7492504..7492520,-!p3@SOX15!1.14!12.83!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.13!12.43!SOX7;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!105.47!PPP1R13L;;chr6:34524025..34524045,-!p3@SPDEF!1.11!12.03!SPDEF;;chr17:70117153..70117174,+!p1@SOX9!1.10!118.70!SOX9;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.44!PITX1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.08!11.03!TFCP2L1;;chr1:209979375..209979386,-!p4@IRF6!1.07!10.83!IRF6;;chr8:102504651..102504683,+!p1@GRHL2!1.07!10.63!GRHL2;;chr3:12330560..12330579,+!p1@PPARG!1.06!12.03!PPARG;;chr3:111314230..111314241,-!p2@ZBED2!1.05!10.23!ZBED2;;chr12:66218598..66218645,+!p2@HMGA2!1.04!46.72!HMGA2;;chr15:67418047..67418093,+!p4@SMAD3!1.03!12.23!SMAD3;;chr2:46524897..46524911,+!p2@EPAS1!1.02!26.87!EPAS1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.64!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!1.00!108.67!MLLT11;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.75!SNAI2;;chr15:101069113..101069169,-!p1@CERS3!1.00!9.02!CERS3;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.82!HOXA9;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.66!HMGA2;;chr19:20278043..20278054,+!p2@ZNF486!0.98!8.62!ZNF486;;chr12:66218904..66218913,+!p11@HMGA2!0.96!8.02!HMGA2;;chr6:21593973..21593988,+!p1@SOX4!0.95!290.73!SOX4;;chr6:10415484..10415508,-!p3@TFAP2A!0.95!7.82!TFAP2A;;chr17:7492979..7492991,-!p5@SOX15!0.95!7.82!SOX15;;chr6:21597765..21597779,+!p2@SOX4!0.94!64.96!SOX4;;chr1:935398..935465,-!p2@HES4!0.94!16.44!HES4;;chr15:83953373..83953386,-!p2@BNC1!0.94!7.62!BNC1;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.62!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.93!83.41!KLF5;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.23!MLLT11;;chr3:189507523..189507535,+!p5@TP63!0.91!7.22!TP63;;chr5:72744594..72744609,-!p1@FOXD1!0.90!32.88!FOXD1;;chr2:101591314..101591333,+!p2@NPAS2!0.89!7.82!NPAS2;;chr15:67418119..67418162,+!p5@SMAD3!0.89!7.62!SMAD3;;chr11:65686732..65686756,+!p2@DRAP1!0.88!29.27!DRAP1;;chr8:49833978..49833996,-!p1@SNAI2!0.87!138.35!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.87!10.83!FOXQ1;;chr10:126138597..126138612,-!p1@NKX1-2!0.87!6.42!NKX1-2;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.42!HMGA2;;chr17:46806067..46806097,-!p1@HOXB13!0.87!6.42!HOXB13;;chrY:2803415..2803468,+!p1@ZFY!0.86!6.22!ZFY;;chr10:8095593..8095625,+!p3@GATA3!0.85!7.22!GATA3;;chr14:37131058..37131139,+!p1@PAX9!0.85!6.02!PAX9;;chr6:10412576..10412599,-!p5@TFAP2A!0.85!6.02!TFAP2A;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!446.13!TAX1BP3;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.13!TBX3;;chr17:45928521..45928539,-!p1@SP6!0.83!5.81!SP6;;chr17:36105042..36105060,-!p1@HNF1B!0.82!5.61!HNF1B;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.61!HOXA9;;chr8:102504690..102504704,+!p3@GRHL2!0.81!5.41!GRHL2;;chr3:5021268..5021282,+!p4@BHLHE40!0.80!11.43!BHLHE40;;chr12:125002739..125002756,-!p6@NCOR2!0.80!8.22!NCOR2;;chr1:151032739..151032748,+!p6@MLLT11!0.80!6.82!MLLT11;;chr2:208030647..208030689,-!p1@KLF7!0.79!46.52!KLF7;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.42!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!0.79!5.21!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!0.78!5.01!HOXA11;;chr1:209979449..209979460,-!p3@IRF6!0.78!5.01!IRF6;;chr17:45928443..45928473,-!p2@SP6!0.78!5.01!SP6;;chr1:935467..935484,-!p1@HES4!0.77!23.26!HES4;;chr2:101436564..101436647,+!p1@NPAS2!0.76!107.27!NPAS2;;chr19:53496768..53496799,-!p1@ZNF702P!0.76!7.62!ZNF702P;;chr3:189507460..189507471,+!p3@TP63!0.76!4.81!TP63;;chr6:21594845..21594908,+!p6@SOX4!0.75!7.82!SOX4;;chr3:25469724..25469773,+!p1@RARB!0.75!7.02!RARB;;chr7:27135591..27135658,-!p1@HOXA1!0.74!9.22!HOXA1;;chr3:1501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|ffid_belonging_in_development=CL:0000223
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|fonse_cell_line_closure=
Line 67: Line 43:
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|fonse_treatment_closure=
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor2.CNhs11972.11331-117E8.hg38.nobarcode.ctss.bed.gz
|id=FF:11331-117E8
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|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11331
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CGTACG.11331
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11331
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|name=Prostate Epithelial Cells, donor2
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|rna_box=117
|rna_catalog_number=N/A
|rna_concentration=0.97
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=E8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.17E+10
|rna_weight_ug=24.4
|rnaseq_library_id=SRhi10011.CGTACG
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=CC-2555
|sample_cell_line=
|sample_cell_lot=lot:7F3603
|sample_cell_type=epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.82192402465479e-216!GO:0005737;cytoplasm;2.05867460246833e-198!GO:0043226;organelle;1.01214892943368e-163!GO:0043229;intracellular organelle;3.49361891056278e-163!GO:0043231;intracellular membrane-bound organelle;1.07532236223932e-152!GO:0043227;membrane-bound organelle;1.16547067746012e-152!GO:0044444;cytoplasmic part;4.88157936946153e-136!GO:0044422;organelle part;2.53114478214064e-124!GO:0044446;intracellular organelle part;7.91640264917193e-123!GO:0032991;macromolecular complex;1.19994415826476e-79!GO:0005515;protein binding;1.14982095488742e-74!GO:0044238;primary metabolic process;1.01088956220517e-73!GO:0030529;ribonucleoprotein complex;7.22579309013905e-72!GO:0044237;cellular metabolic process;3.00141792065772e-71!GO:0043170;macromolecule metabolic process;1.40476002488164e-66!GO:0005739;mitochondrion;2.08189663561259e-58!GO:0043233;organelle lumen;2.82988893818104e-57!GO:0031974;membrane-enclosed lumen;2.82988893818104e-57!GO:0019538;protein metabolic process;3.91006448154462e-56!GO:0031090;organelle membrane;4.12595254633132e-56!GO:0003723;RNA binding;6.02282177592244e-56!GO:0044428;nuclear part;7.76326959117526e-50!GO:0044260;cellular macromolecule metabolic process;5.13966311930159e-49!GO:0044267;cellular protein metabolic process;5.92872720960274e-49!GO:0006412;translation;2.32419816395176e-48!GO:0005840;ribosome;5.79682759552948e-47!GO:0005634;nucleus;5.7475185499615e-46!GO:0015031;protein transport;1.45555559680186e-45!GO:0033036;macromolecule localization;1.56152095077831e-45!GO:0009058;biosynthetic process;1.90368976923123e-44!GO:0016043;cellular component organization and biogenesis;6.50772485317966e-43!GO:0045184;establishment of protein localization;7.49429624393015e-43!GO:0008104;protein localization;1.20681631138026e-42!GO:0003735;structural constituent of ribosome;9.02754693278445e-42!GO:0005829;cytosol;7.47208185783726e-41!GO:0009059;macromolecule biosynthetic process;1.82053424848617e-40!GO:0043234;protein complex;4.30735462497282e-40!GO:0044429;mitochondrial part;5.63583373087549e-40!GO:0044249;cellular biosynthetic process;2.09460775472478e-39!GO:0006396;RNA processing;3.66975744493705e-36!GO:0046907;intracellular transport;4.05797740400047e-36!GO:0033279;ribosomal subunit;4.98618564857141e-36!GO:0031967;organelle envelope;1.59268927908403e-34!GO:0031975;envelope;3.80025624679901e-34!GO:0031981;nuclear lumen;1.29399927051017e-32!GO:0043283;biopolymer metabolic process;6.16819931280057e-32!GO:0006886;intracellular protein transport;3.19595945872655e-30!GO:0010467;gene expression;1.7344203844943e-29!GO:0016071;mRNA metabolic process;2.90881303734095e-29!GO:0065003;macromolecular complex assembly;1.14022436072397e-28!GO:0008380;RNA splicing;2.84380701706199e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.85597798108384e-27!GO:0005740;mitochondrial envelope;7.17302232639975e-27!GO:0012505;endomembrane system;5.08665353894544e-26!GO:0022607;cellular component assembly;6.03019595685435e-26!GO:0043228;non-membrane-bound organelle;7.35139792610758e-26!GO:0043232;intracellular non-membrane-bound organelle;7.35139792610758e-26!GO:0031966;mitochondrial membrane;6.10929646216143e-25!GO:0044445;cytosolic part;8.77359551728231e-25!GO:0006397;mRNA processing;1.07458710485723e-24!GO:0006996;organelle organization and biogenesis;6.15456784625695e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.07280750513651e-23!GO:0051649;establishment of cellular localization;2.20868186187413e-23!GO:0051641;cellular localization;3.30963191049236e-23!GO:0005783;endoplasmic reticulum;3.5945384072115e-23!GO:0019866;organelle inner membrane;3.79458528323858e-23!GO:0005794;Golgi apparatus;7.4795090812169e-23!GO:0005743;mitochondrial inner membrane;7.54208710748097e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.55825523343828e-22!GO:0006119;oxidative phosphorylation;8.85817563855662e-21!GO:0005681;spliceosome;1.32363237122403e-19!GO:0005654;nucleoplasm;1.64506929276725e-19!GO:0044432;endoplasmic reticulum part;7.55432339082953e-19!GO:0015935;small ribosomal subunit;1.63212101269356e-18!GO:0006457;protein folding;1.70543842513548e-18!GO:0015934;large ribosomal subunit;2.41447894181548e-18!GO:0048770;pigment granule;4.97835106655672e-18!GO:0042470;melanosome;4.97835106655672e-18!GO:0044455;mitochondrial membrane part;1.32791223183343e-17!GO:0006512;ubiquitin cycle;4.73670201040508e-17!GO:0016874;ligase activity;8.79848664175333e-17!GO:0016462;pyrophosphatase activity;1.23316697436956e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.3011533528867e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.82191245253727e-16!GO:0043285;biopolymer catabolic process;2.11524092253132e-16!GO:0006605;protein targeting;2.54771076998225e-16!GO:0044451;nucleoplasm part;2.76125342472075e-16!GO:0017111;nucleoside-triphosphatase activity;6.00891716336007e-16!GO:0012501;programmed cell death;7.26390454083311e-16!GO:0031980;mitochondrial lumen;9.39212003818782e-16!GO:0005759;mitochondrial matrix;9.39212003818782e-16!GO:0006915;apoptosis;1.59499468864611e-15!GO:0043412;biopolymer modification;1.9083087355529e-15!GO:0022618;protein-RNA complex assembly;1.94464141196499e-15!GO:0044265;cellular macromolecule catabolic process;2.04573204126268e-15!GO:0016192;vesicle-mediated transport;2.55220726799181e-15!GO:0009057;macromolecule catabolic process;2.94446310557776e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.19973809051137e-15!GO:0005730;nucleolus;7.9309114205369e-15!GO:0048193;Golgi vesicle transport;7.9309114205369e-15!GO:0030163;protein catabolic process;9.14400083868336e-15!GO:0006464;protein modification process;9.33419134729795e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.62728745561696e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.10459518677687e-14!GO:0019941;modification-dependent protein catabolic process;1.38952851659184e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.38952851659184e-14!GO:0044257;cellular protein catabolic process;1.54291107932399e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.58023663687992e-14!GO:0000166;nucleotide binding;1.59640664068926e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.23884955635775e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.29732023521595e-14!GO:0051186;cofactor metabolic process;2.33199380630104e-14!GO:0005746;mitochondrial respiratory chain;2.346297742443e-14!GO:0005789;endoplasmic reticulum membrane;3.18634587188532e-14!GO:0008219;cell death;3.89210480361453e-14!GO:0016265;death;3.89210480361453e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.08433848274131e-13!GO:0003954;NADH dehydrogenase activity;1.08433848274131e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.08433848274131e-13!GO:0008134;transcription factor binding;1.18456663552871e-13!GO:0044248;cellular catabolic process;2.42936544014075e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.02643344253824e-13!GO:0051082;unfolded protein binding;4.20778259682191e-13!GO:0008135;translation factor activity, nucleic acid binding;4.90805250677779e-13!GO:0005761;mitochondrial ribosome;9.4948496202119e-13!GO:0000313;organellar ribosome;9.4948496202119e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.00771066917211e-12!GO:0044431;Golgi apparatus part;4.44002072041664e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.81260196910053e-12!GO:0042773;ATP synthesis coupled electron transport;5.81260196910053e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.50779650439289e-12!GO:0045271;respiratory chain complex I;6.50779650439289e-12!GO:0005747;mitochondrial respiratory chain complex I;6.50779650439289e-12!GO:0043687;post-translational protein modification;8.01529545490151e-12!GO:0006732;coenzyme metabolic process;8.44964610508189e-12!GO:0043067;regulation of programmed cell death;1.13232319786895e-11!GO:0042981;regulation of apoptosis;1.42361845860704e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.84510461738345e-11!GO:0006259;DNA metabolic process;3.08934400382182e-11!GO:0009055;electron carrier activity;3.44897325185356e-11!GO:0006461;protein complex assembly;4.17065328383626e-11!GO:0048523;negative regulation of cellular process;4.89936120923242e-11!GO:0016070;RNA metabolic process;1.93448029679375e-10!GO:0032553;ribonucleotide binding;1.95154620227265e-10!GO:0032555;purine ribonucleotide binding;1.95154620227265e-10!GO:0006913;nucleocytoplasmic transport;2.45315614206838e-10!GO:0008565;protein transporter activity;2.47300524391511e-10!GO:0003743;translation initiation factor activity;2.47773636171243e-10!GO:0006413;translational initiation;2.65274580008216e-10!GO:0008639;small protein conjugating enzyme activity;2.7151784192591e-10!GO:0007049;cell cycle;2.74382734950254e-10!GO:0019787;small conjugating protein ligase activity;3.62632229518127e-10!GO:0043069;negative regulation of programmed cell death;3.89841854198503e-10!GO:0004842;ubiquitin-protein ligase activity;4.58855855629857e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.04396501148957e-10!GO:0000375;RNA splicing, via transesterification reactions;5.04396501148957e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.04396501148957e-10!GO:0005793;ER-Golgi intermediate compartment;5.34268876861657e-10!GO:0017076;purine nucleotide binding;5.73033620733837e-10!GO:0051169;nuclear transport;5.73896795674686e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.4077856990387e-10!GO:0051246;regulation of protein metabolic process;6.93421201358348e-10!GO:0048519;negative regulation of biological process;7.7185643518466e-10!GO:0003676;nucleic acid binding;9.64198906397277e-10!GO:0043066;negative regulation of apoptosis;1.22830264841405e-09!GO:0000139;Golgi membrane;1.30339720543744e-09!GO:0048475;coated membrane;1.30339720543744e-09!GO:0030117;membrane coat;1.30339720543744e-09!GO:0006446;regulation of translational initiation;1.80488283875297e-09!GO:0009259;ribonucleotide metabolic process;2.33053355901358e-09!GO:0005768;endosome;2.59393989408759e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.76352107641002e-09!GO:0042254;ribosome biogenesis and assembly;2.85026434029602e-09!GO:0006916;anti-apoptosis;3.25976398420105e-09!GO:0009141;nucleoside triphosphate metabolic process;3.45469802155513e-09!GO:0009056;catabolic process;3.90125083155743e-09!GO:0016881;acid-amino acid ligase activity;4.12430874057647e-09!GO:0003924;GTPase activity;5.07832841009712e-09!GO:0009150;purine ribonucleotide metabolic process;5.55995344617608e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.62697951680752e-09!GO:0006163;purine nucleotide metabolic process;6.94530174333306e-09!GO:0030120;vesicle coat;8.09139468342552e-09!GO:0030662;coated vesicle membrane;8.09139468342552e-09!GO:0005635;nuclear envelope;8.22064848303303e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.00053326422124e-08!GO:0017038;protein import;1.09982619167636e-08!GO:0003712;transcription cofactor activity;1.10028322069496e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.60552900193777e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.60552900193777e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.97830850243636e-08!GO:0016604;nuclear body;2.09305965142068e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.47216385725563e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.47216385725563e-08!GO:0009260;ribonucleotide biosynthetic process;2.7453126681107e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.18931737441985e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.21294012234879e-08!GO:0051188;cofactor biosynthetic process;3.37101697557797e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.80314676125742e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.96997400780168e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.96997400780168e-08!GO:0015986;ATP synthesis coupled proton transport;4.0931519623764e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.0931519623764e-08!GO:0006164;purine nucleotide biosynthetic process;4.0931519623764e-08!GO:0007005;mitochondrion organization and biogenesis;4.82673647139758e-08!GO:0031965;nuclear membrane;4.86488767314224e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.26661046939671e-08!GO:0000074;regulation of progression through cell cycle;1.27010223435498e-07!GO:0050794;regulation of cellular process;1.38183681930508e-07!GO:0051726;regulation of cell cycle;1.41152148494697e-07!GO:0031988;membrane-bound vesicle;1.58503864431237e-07!GO:0006399;tRNA metabolic process;1.64990027333231e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.86716352333648e-07!GO:0005524;ATP binding;2.77782473849706e-07!GO:0044453;nuclear membrane part;2.85610870382214e-07!GO:0046034;ATP metabolic process;3.00759609677682e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.65501918491822e-07!GO:0016607;nuclear speck;3.76651216511255e-07!GO:0032559;adenyl ribonucleotide binding;4.26329305054274e-07!GO:0031252;leading edge;5.11851614185979e-07!GO:0006754;ATP biosynthetic process;6.72407970580966e-07!GO:0006753;nucleoside phosphate metabolic process;6.72407970580966e-07!GO:0019829;cation-transporting ATPase activity;6.94951810557291e-07!GO:0009108;coenzyme biosynthetic process;8.04803198069815e-07!GO:0022402;cell cycle process;9.03646562141213e-07!GO:0031982;vesicle;1.18021161894104e-06!GO:0005773;vacuole;1.25380980734665e-06!GO:0016887;ATPase activity;1.26389293994826e-06!GO:0030554;adenyl nucleotide binding;1.31962784787386e-06!GO:0006366;transcription from RNA polymerase II promoter;1.42584140431104e-06!GO:0005525;GTP binding;1.42779029860265e-06!GO:0044440;endosomal part;1.49991671290421e-06!GO:0010008;endosome membrane;1.49991671290421e-06!GO:0051170;nuclear import;1.55309839779542e-06!GO:0009060;aerobic respiration;1.60346267781536e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.64636979340652e-06!GO:0031410;cytoplasmic vesicle;1.70875043332501e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.78552864222773e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.78552864222773e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.78552864222773e-06!GO:0005770;late endosome;1.97903278669033e-06!GO:0009117;nucleotide metabolic process;2.35871595743994e-06!GO:0005798;Golgi-associated vesicle;2.40842549694672e-06!GO:0042623;ATPase activity, coupled;2.54341379357895e-06!GO:0016740;transferase activity;3.15544668428474e-06!GO:0043038;amino acid activation;3.30687177576485e-06!GO:0006418;tRNA aminoacylation for protein translation;3.30687177576485e-06!GO:0043039;tRNA aminoacylation;3.30687177576485e-06!GO:0032446;protein modification by small protein conjugation;3.44063941689041e-06!GO:0048522;positive regulation of cellular process;3.60868568935614e-06!GO:0045333;cellular respiration;3.70902426019132e-06!GO:0006606;protein import into nucleus;3.89542980732368e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.89542980732368e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.9031540898166e-06!GO:0016567;protein ubiquitination;4.21256357803888e-06!GO:0007243;protein kinase cascade;4.33157390911356e-06!GO:0065002;intracellular protein transport across a membrane;4.33811891967638e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.56939353090438e-06!GO:0006974;response to DNA damage stimulus;5.52335235017878e-06!GO:0045259;proton-transporting ATP synthase complex;6.1113775590002e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.19386665060154e-06!GO:0005643;nuclear pore;6.19386665060154e-06!GO:0016491;oxidoreductase activity;7.78323834417429e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.75243456281067e-06!GO:0006364;rRNA processing;9.00325664712151e-06!GO:0016072;rRNA metabolic process;9.59543085892915e-06!GO:0000323;lytic vacuole;1.02739813871845e-05!GO:0005764;lysosome;1.02739813871845e-05!GO:0005788;endoplasmic reticulum lumen;1.02739813871845e-05!GO:0006323;DNA packaging;1.0889872879892e-05!GO:0006752;group transfer coenzyme metabolic process;1.15700726028393e-05!GO:0016787;hydrolase activity;1.17735568040051e-05!GO:0043623;cellular protein complex assembly;1.19865645548163e-05!GO:0008654;phospholipid biosynthetic process;1.35987677481236e-05!GO:0005905;coated pit;1.45539488159746e-05!GO:0004386;helicase activity;1.47616915464466e-05!GO:0006099;tricarboxylic acid cycle;1.58196527194995e-05!GO:0046356;acetyl-CoA catabolic process;1.58196527194995e-05!GO:0008026;ATP-dependent helicase activity;1.67126860803702e-05!GO:0006793;phosphorus metabolic process;1.88016120035313e-05!GO:0006796;phosphate metabolic process;1.88016120035313e-05!GO:0030118;clathrin coat;2.00563140173322e-05!GO:0042802;identical protein binding;2.09857239947148e-05!GO:0006613;cotranslational protein targeting to membrane;2.52933394664805e-05!GO:0003714;transcription corepressor activity;2.5843174014586e-05!GO:0032561;guanyl ribonucleotide binding;2.79998734554662e-05!GO:0019001;guanyl nucleotide binding;2.79998734554662e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.00168488601331e-05!GO:0016853;isomerase activity;3.06244298126672e-05!GO:0009967;positive regulation of signal transduction;3.15798072587646e-05!GO:0045786;negative regulation of progression through cell cycle;3.270725666406e-05!GO:0050789;regulation of biological process;3.47616707122392e-05!GO:0007264;small GTPase mediated signal transduction;3.48729350629069e-05!GO:0000278;mitotic cell cycle;4.08570113629564e-05!GO:0051187;cofactor catabolic process;4.08570113629564e-05!GO:0008092;cytoskeletal protein binding;4.26684510628457e-05!GO:0006084;acetyl-CoA metabolic process;4.50101880925216e-05!GO:0004298;threonine endopeptidase activity;4.53288208247735e-05!GO:0016564;transcription repressor activity;5.16201602046751e-05!GO:0030867;rough endoplasmic reticulum membrane;5.30418287740069e-05!GO:0005762;mitochondrial large ribosomal subunit;5.75158337219802e-05!GO:0000315;organellar large ribosomal subunit;5.75158337219802e-05!GO:0006403;RNA localization;6.06737914778892e-05!GO:0050657;nucleic acid transport;6.26832761142296e-05!GO:0051236;establishment of RNA localization;6.26832761142296e-05!GO:0050658;RNA transport;6.26832761142296e-05!GO:0005667;transcription factor complex;6.32882797770427e-05!GO:0048468;cell development;6.71953098236297e-05!GO:0000245;spliceosome assembly;6.87233687360372e-05!GO:0016310;phosphorylation;7.10051064744542e-05!GO:0048471;perinuclear region of cytoplasm;8.19704159008688e-05!GO:0046930;pore complex;8.40711124151114e-05!GO:0016044;membrane organization and biogenesis;9.70047683977737e-05!GO:0019843;rRNA binding;0.000110305035313766!GO:0065004;protein-DNA complex assembly;0.000111222031356105!GO:0045454;cell redox homeostasis;0.000111222031356105!GO:0009109;coenzyme catabolic process;0.000119674394423079!GO:0005769;early endosome;0.000121318928239881!GO:0031324;negative regulation of cellular metabolic process;0.000125572595315344!GO:0001726;ruffle;0.000128092399768869!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00015508172536102!GO:0065009;regulation of a molecular function;0.000162473224495095!GO:0006612;protein targeting to membrane;0.000168141897700747!GO:0030119;AP-type membrane coat adaptor complex;0.000171036756673346!GO:0031968;organelle outer membrane;0.000172238629139974!GO:0051276;chromosome organization and biogenesis;0.000172975893995765!GO:0000151;ubiquitin ligase complex;0.000181655247801115!GO:0005048;signal sequence binding;0.000196220522623207!GO:0006281;DNA repair;0.000197102074043672!GO:0019867;outer membrane;0.000203799739193028!GO:0030029;actin filament-based process;0.000209154707978058!GO:0009892;negative regulation of metabolic process;0.000217464238483795!GO:0007010;cytoskeleton organization and biogenesis;0.000218367264094885!GO:0016563;transcription activator activity;0.00022339633815885!GO:0051427;hormone receptor binding;0.000232852602533626!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000237347915548637!GO:0016779;nucleotidyltransferase activity;0.000252018905650001!GO:0048518;positive regulation of biological process;0.000252514537394355!GO:0009719;response to endogenous stimulus;0.000253202361351989!GO:0016126;sterol biosynthetic process;0.000257709093915854!GO:0005741;mitochondrial outer membrane;0.0002613109491898!GO:0016859;cis-trans isomerase activity;0.000264252321111322!GO:0033116;ER-Golgi intermediate compartment membrane;0.00026914811003134!GO:0003724;RNA helicase activity;0.000286591641128307!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000299527292815275!GO:0030658;transport vesicle membrane;0.000303367939717061!GO:0030131;clathrin adaptor complex;0.000307022276916805!GO:0016568;chromatin modification;0.000307430831453708!GO:0051789;response to protein stimulus;0.000316606219533352!GO:0006986;response to unfolded protein;0.000316606219533352!GO:0003713;transcription coactivator activity;0.000324284239328392!GO:0008610;lipid biosynthetic process;0.000363435595474987!GO:0005885;Arp2/3 protein complex;0.000367451017581551!GO:0030133;transport vesicle;0.0004008658372434!GO:0005791;rough endoplasmic reticulum;0.000415379475121351!GO:0035257;nuclear hormone receptor binding;0.000427077055114844!GO:0043021;ribonucleoprotein binding;0.000461913767532715!GO:0008632;apoptotic program;0.000492832584575004!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000498915960556085!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000520791244265826!GO:0008250;oligosaccharyl transferase complex;0.000531269994448478!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000564013615096133!GO:0030132;clathrin coat of coated pit;0.000595731909538913!GO:0004576;oligosaccharyl transferase activity;0.000662007263269615!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000677573838422626!GO:0051252;regulation of RNA metabolic process;0.000717886766110622!GO:0019899;enzyme binding;0.00074294128012601!GO:0006333;chromatin assembly or disassembly;0.000769491401582444!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000797486220685878!GO:0006091;generation of precursor metabolites and energy;0.00080624963938473!GO:0000314;organellar small ribosomal subunit;0.000807216271085944!GO:0005763;mitochondrial small ribosomal subunit;0.000807216271085944!GO:0030660;Golgi-associated vesicle membrane;0.000812928892379683!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000824689742544782!GO:0051028;mRNA transport;0.000854606802744961!GO:0006979;response to oxidative stress;0.000892452102550369!GO:0006839;mitochondrial transport;0.000972242078546448!GO:0003697;single-stranded DNA binding;0.0009962488798196!GO:0030659;cytoplasmic vesicle membrane;0.00110557039200936!GO:0051920;peroxiredoxin activity;0.00110903064102972!GO:0015630;microtubule cytoskeleton;0.00113333495052116!GO:0043065;positive regulation of apoptosis;0.00113639651679936!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00120342782538828!GO:0006626;protein targeting to mitochondrion;0.00120615126279203!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125764550313934!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00128669248573982!GO:0043068;positive regulation of programmed cell death;0.00133508160116576!GO:0030027;lamellipodium;0.00144140589413523!GO:0007006;mitochondrial membrane organization and biogenesis;0.00146726295582174!GO:0051168;nuclear export;0.00148899263946433!GO:0018196;peptidyl-asparagine modification;0.00151463081493386!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00151463081493386!GO:0046467;membrane lipid biosynthetic process;0.0015493490222985!GO:0006695;cholesterol biosynthetic process;0.00155770604273789!GO:0016197;endosome transport;0.00161530068777746!GO:0009165;nucleotide biosynthetic process;0.00168764354138918!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00169808575223055!GO:0046474;glycerophospholipid biosynthetic process;0.00170100256204905!GO:0000785;chromatin;0.00176872052882169!GO:0043566;structure-specific DNA binding;0.00177444857056133!GO:0008361;regulation of cell size;0.00182598570774274!GO:0051101;regulation of DNA binding;0.00188976643595675!GO:0015980;energy derivation by oxidation of organic compounds;0.00188976643595675!GO:0003899;DNA-directed RNA polymerase activity;0.00189142277317121!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00191034921234249!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00191034921234249!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00191034921234249!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00191183333383575!GO:0043488;regulation of mRNA stability;0.00191183333383575!GO:0043487;regulation of RNA stability;0.00191183333383575!GO:0051128;regulation of cellular component organization and biogenesis;0.00195566666343391!GO:0030125;clathrin vesicle coat;0.00207794262163274!GO:0030665;clathrin coated vesicle membrane;0.00207794262163274!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0021117449641728!GO:0030663;COPI coated vesicle membrane;0.00214824098846114!GO:0030126;COPI vesicle coat;0.00214824098846114!GO:0006891;intra-Golgi vesicle-mediated transport;0.00218126873178361!GO:0006417;regulation of translation;0.00219128698407197!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00228392459616197!GO:0001558;regulation of cell growth;0.00239227277232561!GO:0006414;translational elongation;0.002414670556561!GO:0016049;cell growth;0.00241642431810854!GO:0044433;cytoplasmic vesicle part;0.00241642431810854!GO:0003729;mRNA binding;0.00255933309085794!GO:0016481;negative regulation of transcription;0.00273391038702619!GO:0048144;fibroblast proliferation;0.00279818371829191!GO:0048145;regulation of fibroblast proliferation;0.00279818371829191!GO:0006402;mRNA catabolic process;0.00307213490506261!GO:0030137;COPI-coated vesicle;0.00320362770200892!GO:0008186;RNA-dependent ATPase activity;0.00336093473534201!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00340015758894339!GO:0030176;integral to endoplasmic reticulum membrane;0.00341881346474287!GO:0030833;regulation of actin filament polymerization;0.00345869708579153!GO:0008637;apoptotic mitochondrial changes;0.00346567263600807!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00363882299222424!GO:0015399;primary active transmembrane transporter activity;0.00363882299222424!GO:0030134;ER to Golgi transport vesicle;0.00369363604554983!GO:0043681;protein import into mitochondrion;0.00383037431838895!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00389570799676463!GO:0006383;transcription from RNA polymerase III promoter;0.00391444495836073!GO:0045893;positive regulation of transcription, DNA-dependent;0.00400240324418821!GO:0006509;membrane protein ectodomain proteolysis;0.00403437620378568!GO:0033619;membrane protein proteolysis;0.00403437620378568!GO:0012506;vesicle membrane;0.00408359919587786!GO:0030031;cell projection biogenesis;0.00417043390153129!GO:0044262;cellular carbohydrate metabolic process;0.00437019790752973!GO:0051098;regulation of binding;0.00439627866135001!GO:0045045;secretory pathway;0.00443095368521246!GO:0015631;tubulin binding;0.00448111891196066!GO:0031902;late endosome membrane;0.0045352011788456!GO:0046489;phosphoinositide biosynthetic process;0.00458835353212071!GO:0048500;signal recognition particle;0.00492996634020403!GO:0050790;regulation of catalytic activity;0.00501413800991993!GO:0008139;nuclear localization sequence binding;0.00513982789660432!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00518377941154846!GO:0048487;beta-tubulin binding;0.00536470267623453!GO:0005813;centrosome;0.00536470267623453!GO:0030127;COPII vesicle coat;0.00548111073738742!GO:0012507;ER to Golgi transport vesicle membrane;0.00548111073738742!GO:0030880;RNA polymerase complex;0.00550464448015299!GO:0046822;regulation of nucleocytoplasmic transport;0.0056709407333462!GO:0048146;positive regulation of fibroblast proliferation;0.00583827505728007!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00588158095295951!GO:0006260;DNA replication;0.00591915712738456!GO:0015992;proton transport;0.00592844662194985!GO:0006818;hydrogen transport;0.00611650428110768!GO:0017166;vinculin binding;0.00654938414851448!GO:0000087;M phase of mitotic cell cycle;0.00661199461530977!GO:0045941;positive regulation of transcription;0.00664810579393633!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00673591365121776!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00673591365121776!GO:0006401;RNA catabolic process;0.00694851678272754!GO:0030521;androgen receptor signaling pathway;0.00720062176876116!GO:0016125;sterol metabolic process;0.00736906069007168!GO:0035258;steroid hormone receptor binding;0.00737269912840314!GO:0006917;induction of apoptosis;0.00745157383704149!GO:0006334;nucleosome assembly;0.00760641990715359!GO:0007265;Ras protein signal transduction;0.00763114727497281!GO:0005694;chromosome;0.00770453061135774!GO:0006650;glycerophospholipid metabolic process;0.00770859544024485!GO:0007067;mitosis;0.00802205220490148!GO:0004004;ATP-dependent RNA helicase activity;0.00804834874700492!GO:0019222;regulation of metabolic process;0.00820569150654199!GO:0006607;NLS-bearing substrate import into nucleus;0.00821222452376965!GO:0005774;vacuolar membrane;0.00826497918574426!GO:0043284;biopolymer biosynthetic process;0.00829208111251376!GO:0000059;protein import into nucleus, docking;0.00829208111251376!GO:0046519;sphingoid metabolic process;0.0083969336960402!GO:0008243;plasminogen activator activity;0.00866423376712845!GO:0065007;biological regulation;0.00872105899727921!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00872105899727921!GO:0006595;polyamine metabolic process;0.00891281965643177!GO:0008047;enzyme activator activity;0.00906274444894145!GO:0001666;response to hypoxia;0.0092210838306244!GO:0032507;maintenance of cellular protein localization;0.00930694157942543!GO:0031326;regulation of cellular biosynthetic process;0.00978738838033539!GO:0031072;heat shock protein binding;0.0097977146216065!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00989776358137279!GO:0045047;protein targeting to ER;0.00989776358137279!GO:0030032;lamellipodium biogenesis;0.00989776358137279!GO:0001836;release of cytochrome c from mitochondria;0.00990772196864928!GO:0012502;induction of programmed cell death;0.00998321670012772!GO:0006352;transcription initiation;0.010268919249698!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0106717049187833!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0108057340234541!GO:0000428;DNA-directed RNA polymerase complex;0.0108057340234541!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0115106436010052!GO:0007040;lysosome organization and biogenesis;0.0116590041736828!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0116897854390267!GO:0006897;endocytosis;0.0117919230529293!GO:0010324;membrane invagination;0.0117919230529293!GO:0005815;microtubule organizing center;0.0120446579344321!GO:0007050;cell cycle arrest;0.0122218732551174!GO:0009889;regulation of biosynthetic process;0.0122535052997254!GO:0031497;chromatin assembly;0.0124689014169245!GO:0005862;muscle thin filament tropomyosin;0.0125524775578086!GO:0005684;U2-dependent spliceosome;0.0125524775578086!GO:0006749;glutathione metabolic process;0.0125678586152339!GO:0016272;prefoldin complex;0.0129391789495689!GO:0006354;RNA elongation;0.0130599282346438!GO:0016251;general RNA polymerase II transcription factor activity;0.0136131910152573!GO:0051235;maintenance of localization;0.013786184392868!GO:0007242;intracellular signaling cascade;0.0138163977884282!GO:0005869;dynactin complex;0.0140454700969435!GO:0031529;ruffle organization and biogenesis;0.0143883638209101!GO:0003711;transcription elongation regulator activity;0.0147546854887477!GO:0032940;secretion by cell;0.0148075082997196!GO:0050750;low-density lipoprotein receptor binding;0.0149805984487106!GO:0031418;L-ascorbic acid binding;0.014995513386982!GO:0008033;tRNA processing;0.0150318736554582!GO:0045334;clathrin-coated endocytic vesicle;0.0163332482754547!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.016355497229609!GO:0043022;ribosome binding;0.0165072839905698!GO:0008629;induction of apoptosis by intracellular signals;0.0165400219571536!GO:0006643;membrane lipid metabolic process;0.0165865210907944!GO:0045185;maintenance of protein localization;0.0166098441145685!GO:0022890;inorganic cation transmembrane transporter activity;0.0166633327989817!GO:0030984;kininogen binding;0.0169177310132618!GO:0004213;cathepsin B activity;0.0169177310132618!GO:0044427;chromosomal part;0.0174129451089652!GO:0040008;regulation of growth;0.0174409474254349!GO:0008312;7S RNA binding;0.017714331809541!GO:0033673;negative regulation of kinase activity;0.017926882335558!GO:0006469;negative regulation of protein kinase activity;0.017926882335558!GO:0044452;nucleolar part;0.0192196958215406!GO:0030384;phosphoinositide metabolic process;0.0192708190512878!GO:0050681;androgen receptor binding;0.0192708190512878!GO:0030041;actin filament polymerization;0.0193726880210471!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0195004957874754!GO:0033043;regulation of organelle organization and biogenesis;0.0195004957874754!GO:0007034;vacuolar transport;0.0197063702349997!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0197800936879799!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0201873330330035!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0202019031582638!GO:0044437;vacuolar part;0.0202019031582638!GO:0007033;vacuole organization and biogenesis;0.0202019031582638!GO:0006672;ceramide metabolic process;0.0203471156473791!GO:0051651;maintenance of cellular localization;0.0204766718747506!GO:0031543;peptidyl-proline dioxygenase activity;0.0210958186399352!GO:0051087;chaperone binding;0.0212365348133358!GO:0000339;RNA cap binding;0.0216368256918282!GO:0008234;cysteine-type peptidase activity;0.0216680588350349!GO:0005765;lysosomal membrane;0.0219574553768528!GO:0005832;chaperonin-containing T-complex;0.0227962207329403!GO:0005149;interleukin-1 receptor binding;0.0227962207329403!GO:0051272;positive regulation of cell motility;0.0227963502370968!GO:0040017;positive regulation of locomotion;0.0227963502370968!GO:0016363;nuclear matrix;0.023267336618044!GO:0008180;signalosome;0.0232876325449282!GO:0051287;NAD binding;0.0233460428275216!GO:0044255;cellular lipid metabolic process;0.0234494745836297!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0235954903699593!GO:0046483;heterocycle metabolic process;0.0239264453031402!GO:0006892;post-Golgi vesicle-mediated transport;0.0243713049148994!GO:0008283;cell proliferation;0.0244232022338314!GO:0043492;ATPase activity, coupled to movement of substances;0.0255722504389071!GO:0005665;DNA-directed RNA polymerase II, core complex;0.02581290667303!GO:0035035;histone acetyltransferase binding;0.0261277869387089!GO:0051336;regulation of hydrolase activity;0.0261277869387089!GO:0022408;negative regulation of cell-cell adhesion;0.0263572255092534!GO:0000049;tRNA binding;0.0267903653422072!GO:0003746;translation elongation factor activity;0.0269354506572293!GO:0050178;phenylpyruvate tautomerase activity;0.0269354506572293!GO:0006611;protein export from nucleus;0.0271071373802425!GO:0051301;cell division;0.0271592836484522!GO:0051329;interphase of mitotic cell cycle;0.0273304432107951!GO:0051540;metal cluster binding;0.0275464769845576!GO:0051536;iron-sulfur cluster binding;0.0275464769845576!GO:0006950;response to stress;0.0275483586110987!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0280036331912363!GO:0045792;negative regulation of cell size;0.0280701832860152!GO:0031901;early endosome membrane;0.0283552283411901!GO:0009116;nucleoside metabolic process;0.028873805684088!GO:0006497;protein amino acid lipidation;0.0291366428490431!GO:0005856;cytoskeleton;0.0293529399847851!GO:0030140;trans-Golgi network transport vesicle;0.0293936640468179!GO:0000209;protein polyubiquitination;0.0293936640468179!GO:0051338;regulation of transferase activity;0.0294562484769575!GO:0042158;lipoprotein biosynthetic process;0.0301982260321879!GO:0006778;porphyrin metabolic process;0.0301982260321879!GO:0033013;tetrapyrrole metabolic process;0.0301982260321879!GO:0004674;protein serine/threonine kinase activity;0.0305074216586138!GO:0008426;protein kinase C inhibitor activity;0.0306826247569247!GO:0030308;negative regulation of cell growth;0.0308608362062118!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0309096033915306!GO:0022407;regulation of cell-cell adhesion;0.0313470388365243!GO:0022403;cell cycle phase;0.0318719151402044!GO:0051348;negative regulation of transferase activity;0.03188755687549!GO:0022406;membrane docking;0.0322443401791006!GO:0048278;vesicle docking;0.0322443401791006!GO:0019798;procollagen-proline dioxygenase activity;0.0335695059395759!GO:0043281;regulation of caspase activity;0.0336647107354855!GO:0031301;integral to organelle membrane;0.0338183068610639!GO:0030518;steroid hormone receptor signaling pathway;0.0339503866829796!GO:0045892;negative regulation of transcription, DNA-dependent;0.0353444449811113!GO:0031625;ubiquitin protein ligase binding;0.0353444449811113!GO:0032984;macromolecular complex disassembly;0.0356145416492839!GO:0006506;GPI anchor biosynthetic process;0.0356186957171945!GO:0043624;cellular protein complex disassembly;0.0357055414813462!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0359977088652652!GO:0015002;heme-copper terminal oxidase activity;0.0359977088652652!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0359977088652652!GO:0004129;cytochrome-c oxidase activity;0.0359977088652652!GO:0008154;actin polymerization and/or depolymerization;0.0359977088652652!GO:0045936;negative regulation of phosphate metabolic process;0.0359977088652652!GO:0009966;regulation of signal transduction;0.0359977088652652!GO:0033559;unsaturated fatty acid metabolic process;0.0359977088652652!GO:0006636;unsaturated fatty acid biosynthetic process;0.0359977088652652!GO:0008538;proteasome activator activity;0.0367253531699536!GO:0005637;nuclear inner membrane;0.0368916016097074!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0373602687717575!GO:0030911;TPR domain binding;0.0373637252175251!GO:0051881;regulation of mitochondrial membrane potential;0.0375751306968961!GO:0006007;glucose catabolic process;0.0379190932169224!GO:0005758;mitochondrial intermembrane space;0.0382800697390762!GO:0006066;alcohol metabolic process;0.0393341358554064!GO:0006904;vesicle docking during exocytosis;0.0393580381276249!GO:0004680;casein kinase activity;0.0394998516336928!GO:0006405;RNA export from nucleus;0.0401079531735936!GO:0030100;regulation of endocytosis;0.0406122075804222!GO:0016485;protein processing;0.0406122075804222!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0407836208332307!GO:0005669;transcription factor TFIID complex;0.0408577566488823!GO:0032594;protein transport within lipid bilayer;0.040890672635778!GO:0032907;transforming growth factor-beta3 production;0.040890672635778!GO:0032596;protein transport into lipid raft;0.040890672635778!GO:0032910;regulation of transforming growth factor-beta3 production;0.040890672635778!GO:0032595;B cell receptor transport within lipid bilayer;0.040890672635778!GO:0033606;chemokine receptor transport within lipid bilayer;0.040890672635778!GO:0032600;chemokine receptor transport out of lipid raft;0.040890672635778!GO:0032599;protein transport out of lipid raft;0.040890672635778!GO:0032597;B cell receptor transport into lipid raft;0.040890672635778!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.040890672635778!GO:0031371;ubiquitin conjugating enzyme complex;0.040890672635778!GO:0008022;protein C-terminus binding;0.040890672635778!GO:0006769;nicotinamide metabolic process;0.040890672635778!GO:0051100;negative regulation of binding;0.040890672635778!GO:0001952;regulation of cell-matrix adhesion;0.040890672635778!GO:0003779;actin binding;0.040890672635778!GO:0003690;double-stranded DNA binding;0.0410186093467051!GO:0030128;clathrin coat of endocytic vesicle;0.0411842971271164!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0411842971271164!GO:0030122;AP-2 adaptor complex;0.0411842971271164!GO:0042168;heme metabolic process;0.0414220820297626!GO:0032906;transforming growth factor-beta2 production;0.0414220820297626!GO:0032909;regulation of transforming growth factor-beta2 production;0.0414220820297626!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0414220820297626!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0414220820297626!GO:0033130;acetylcholine receptor binding;0.0414278814735439!GO:0043154;negative regulation of caspase activity;0.0418448455957862!GO:0008601;protein phosphatase type 2A regulator activity;0.0421790431835211!GO:0006505;GPI anchor metabolic process;0.0427711702201386!GO:0005784;translocon complex;0.0430903622821625!GO:0031970;organelle envelope lumen;0.0431593283378488!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0435963122160972!GO:0016408;C-acyltransferase activity;0.044177873665715!GO:0008320;protein transmembrane transporter activity;0.0445312617986244!GO:0051052;regulation of DNA metabolic process;0.044674441811545!GO:0045767;regulation of anti-apoptosis;0.0447261071081002!GO:0006740;NADPH regeneration;0.0450296395862429!GO:0006098;pentose-phosphate shunt;0.0450296395862429!GO:0030145;manganese ion binding;0.0450836554990656!GO:0043549;regulation of kinase activity;0.0454645394939682!GO:0005912;adherens junction;0.0456793353971129!GO:0016791;phosphoric monoester hydrolase activity;0.0457198330300216!GO:0006733;oxidoreduction coenzyme metabolic process;0.0474631229891093!GO:0004197;cysteine-type endopeptidase activity;0.0474631229891093!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0478418797230187!GO:0051325;interphase;0.0479938923908228!GO:0005874;microtubule;0.0479938923908228!GO:0022884;macromolecule transmembrane transporter activity;0.0480057231379729!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0480057231379729!GO:0051059;NF-kappaB binding;0.0480057231379729!GO:0030433;ER-associated protein catabolic process;0.0482002234204543!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0482002234204543!GO:0051270;regulation of cell motility;0.0482532339381595!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0483262049163004!GO:0008203;cholesterol metabolic process;0.0486626616332629!GO:0006458;'de novo' protein folding;0.0489324316702449!GO:0051084;'de novo' posttranslational protein folding;0.0489324316702449!GO:0006376;mRNA splice site selection;0.0491365619979355!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0491365619979355!GO:0031124;mRNA 3'-end processing;0.0493004408690253!GO:0003756;protein disulfide isomerase activity;0.0495721640266909!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0495721640266909!GO:0000159;protein phosphatase type 2A complex;0.0496001886963717!GO:0007041;lysosomal transport;0.049700100280411!GO:0007030;Golgi organization and biogenesis;0.0497832126932164!GO:0042987;amyloid precursor protein catabolic process;0.0499178703305964
|sample_id=11331
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=prostate
|top_motifs=TP53:2.91090196525;TBX4,5:2.60540374091;TEF:2.07981557944;NKX2-2,8:2.0028848472;SPZ1:1.82610293288;UFEwm:1.81743271951;PPARG:1.80239491092;RXR{A,B,G}:1.66803238458;ZEB1:1.61279321796;TFCP2:1.48722312883;TEAD1:1.41100992117;HIF1A:1.37945215529;SNAI1..3:1.3467294699;PAX1,9:1.29284183126;ZBTB6:1.2908201128;ZIC1..3:1.1998219749;ONECUT1,2:1.0786383691;ARID5B:1.0753411382;EBF1:1.03971731634;HMX1:1.03765813081;ZNF238:0.975658396541;MYOD1:0.955441769489;HOX{A4,D4}:0.939649257136;XCPE1{core}:0.855870215295;ZNF148:0.837896605078;HAND1,2:0.826869327932;GZF1:0.81210449238;HSF1,2:0.811204099123;SP1:0.795657172715;NKX3-2:0.733242767176;TFAP2{A,C}:0.708979852091;MAZ:0.702278068832;FOXL1:0.697048237464;NKX2-3_NKX2-5:0.693496222254;IKZF1:0.681664910973;ZNF423:0.614788611854;LMO2:0.582733634709;SMAD1..7,9:0.495791169109;GLI1..3:0.465371711706;TOPORS:0.458464483045;EVI1:0.432595867123;ESR1:0.422715907125;TBP:0.414381645092;MTF1:0.402400992957;KLF4:0.390052173801;T:0.38991617836;NR1H4:0.37268423978;REST:0.369325286014;FOXM1:0.357294554179;FOSL2:0.339301520654;NR5A1,2:0.327449440848;ELK1,4_GABP{A,B1}:0.298064978796;GTF2A1,2:0.276240298062;SOX17:0.274238247697;BACH2:0.268933989269;FOS_FOS{B,L1}_JUN{B,D}:0.261923400155;POU3F1..4:0.232319540873;SOX2:0.229058429466;TFAP2B:0.225497450516;TFAP4:0.220707444913;RXRA_VDR{dimer}:0.220033935444;NR3C1:0.215623287588;FOXQ1:0.211195595787;bHLH_family:0.205954966247;ADNP_IRX_SIX_ZHX:0.175874509858;ALX4:0.169761731225;HOXA9_MEIS1:0.160733265244;MTE{core}:0.141533601609;HIC1:0.12785581097;ZNF143:0.119299952989;PAX5:0.104901585909;GFI1B:0.101884836212;LEF1_TCF7_TCF7L1,2:0.0772539026858;AR:0.0670571695073;NR6A1:0.0429049878974;FOXN1:0.0404152659016;TLX1..3_NFIC{dimer}:0.0401810360719;NFE2L1:0.0238193456338;VSX1,2:0.0104250268257;POU6F1:0.00465673299144;STAT5{A,B}:-0.0213242519949;GTF2I:-0.0352185607162;EN1,2:-0.0587258330503;FOXO1,3,4:-0.0692459495543;NKX2-1,4:-0.0773797182983;ATF6:-0.0785638346387;CDC5L:-0.0860416062568;HMGA1,2:-0.0890559108127;POU1F1:-0.0911157304368;HLF:-0.0991219503495;MED-1{core}:-0.112260494712;NFIL3:-0.123087654575;PAX2:-0.13219487665;PITX1..3:-0.135432135687;ZFP161:-0.159832097794;HNF4A_NR2F1,2:-0.168695324861;NHLH1,2:-0.181954867671;MYFfamily:-0.196466964683;PAX4:-0.205365098388;NRF1:-0.216338746324;NFE2:-0.218614720704;GCM1,2:-0.22421925507;POU2F1..3:-0.225428969633;HNF1A:-0.242523758678;TLX2:-0.269059433759;EP300:-0.272159506481;JUN:-0.289696991121;NFKB1_REL_RELA:-0.293583609555;MYBL2:-0.346855747629;MAFB:-0.350139729858;PRDM1:-0.357604661912;IRF7:-0.360065218876;CEBPA,B_DDIT3:-0.363964258488;LHX3,4:-0.36399137055;PAX8:-0.372604562977;GATA4:-0.383078896369;NKX6-1,2:-0.39932360747;SPI1:-0.409630879123;RREB1:-0.411032284017;ZBTB16:-0.413516735982;IKZF2:-0.429354774046;ESRRA:-0.444353535317;ETS1,2:-0.445711151006;EGR1..3:-0.462565357569;AIRE:-0.465653346795;SRF:-0.473621997232;SPIB:-0.49430910443;OCT4_SOX2{dimer}:-0.497852624596;PATZ1:-0.527221198896;FOXP1:-0.535693301833;SREBF1,2:-0.552714307842;TFDP1:-0.558538796234;ELF1,2,4:-0.565215406029;HOX{A5,B5}:-0.578314609323;RBPJ:-0.59463126555;STAT2,4,6:-0.594696897904;CRX:-0.597476905986;HES1:-0.598850120808;RUNX1..3:-0.620463514829;NFE2L2:-0.63011981746;RFX1:-0.653552910733;YY1:-0.6601205632;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.663188305893;PDX1:-0.676645664038;MZF1:-0.681842886858;FOX{F1,F2,J1}:-0.683668778799;ATF5_CREB3:-0.693095724209;PAX6:-0.693925199759;NKX3-1:-0.709155734444;NANOG{mouse}:-0.743667356639;FOX{D1,D2}:-0.744205377943;BPTF:-0.744251408257;RFX2..5_RFXANK_RFXAP:-0.760223147758;NFIX:-0.763975730681;ATF2:-0.768839798271;DMAP1_NCOR{1,2}_SMARC:-0.788128770331;ZNF384:-0.811383418053;IRF1,2:-0.811885177033;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.818260150261;SOX{8,9,10}:-0.834370386304;ATF4:-0.862843290867;GATA6:-0.869453911664;MEF2{A,B,C,D}:-0.882393312104;DBP:-0.937740934508;CREB1:-0.963574433849;NFATC1..3:-0.970888166785;STAT1,3:-0.976726709414;GFI1:-0.985646908278;NFY{A,B,C}:-0.985951855391;MYB:-0.989754795621;NANOG:-1.00229727443;FOXD3:-1.01828466386;FOX{I1,J2}:-1.03384494745;E2F1..5:-1.05184326298;FOXP3:-1.11310579582;PAX3,7:-1.16262067149;FOXA2:-1.20147632581;CUX2:-1.24092563966;TGIF1:-1.24143270166;HBP1_HMGB_SSRP1_UBTF:-1.2542054363;TAL1_TCF{3,4,12}:-1.2613457748;PBX1:-1.30349304198;AHR_ARNT_ARNT2:-1.36324345157;RORA:-1.39358165811;BREu{core}:-1.39380408863;XBP1:-1.43561822392;HOX{A6,A7,B6,B7}:-1.46008787773;POU5F1:-1.56087936711;CDX1,2,4:-1.60360320972;SOX5:-1.64299021233;PRRX1,2:-1.68112595943;ALX1:-1.83730626492
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11331-117E8;search_select_hide=table117:FF:11331-117E8
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Prostate Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11972
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stageNA
sexmale
ageNA
cell typeepithelial cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005117
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11972 CAGE DRX008420 DRR009292
Accession ID Hg19

Library idBAMCTSS
CNhs11972 DRZ000717 DRZ002102
Accession ID Hg38

Library idBAMCTSS
CNhs11972 DRZ012067 DRZ013452
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005117
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.CGTACG sRNA-Seq DRX037180 DRR041546
Accession ID Hg19

Library idBAMCTSS
SRhi10011.CGTACG DRZ007188


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.00591
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.268
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.644
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0794
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.119
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0988
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0794
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.229
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.506
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.398
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.115
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.369
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.054
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0794
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.858
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.39
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0794
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.581
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.965
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0794
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.781
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11972

Jaspar motifP-value
MA0002.20.405
MA0003.10.577
MA0004.10.119
MA0006.10.00542
MA0007.10.709
MA0009.10.323
MA0014.10.642
MA0017.10.615
MA0018.27.34117e-4
MA0019.10.256
MA0024.11.09633e-7
MA0025.10.0803
MA0027.10.507
MA0028.10.272
MA0029.10.199
MA0030.10.289
MA0031.10.225
MA0035.20.166
MA0038.14.93129e-4
MA0039.20.0758
MA0040.10.355
MA0041.10.72
MA0042.10.23
MA0043.10.00544
MA0046.10.88
MA0047.20.361
MA0048.10.761
MA0050.11.9262e-6
MA0051.14.88252e-4
MA0052.10.0213
MA0055.10.894
MA0057.10.0434
MA0058.10.0314
MA0059.10.705
MA0060.13.44309e-7
MA0061.10.238
MA0062.20.0168
MA0065.20.287
MA0066.10.132
MA0067.10.00156
MA0068.10.0743
MA0069.10.0313
MA0070.10.412
MA0071.10.225
MA0072.10.565
MA0073.10.819
MA0074.10.27
MA0076.10.107
MA0077.10.109
MA0078.10.543
MA0079.20.0755
MA0080.21.02942e-6
MA0081.10.0143
MA0083.10.267
MA0084.10.291
MA0087.10.909
MA0088.10.557
MA0090.18.55012e-4
MA0091.10.713
MA0092.10.971
MA0093.10.0685
MA0099.20.369
MA0100.10.0472
MA0101.10.0167
MA0102.20.036
MA0103.12.07342e-6
MA0104.20.0399
MA0105.10.522
MA0106.11.26774e-10
MA0107.10.0146
MA0108.20.368
MA0111.10.92
MA0112.20.0633
MA0113.10.457
MA0114.10.925
MA0115.10.362
MA0116.10.782
MA0117.10.311
MA0119.10.697
MA0122.10.533
MA0124.10.58
MA0125.10.899
MA0131.10.505
MA0135.10.837
MA0136.15.69551e-6
MA0137.20.00279
MA0138.20.894
MA0139.10.257
MA0140.10.066
MA0141.10.47
MA0142.10.95
MA0143.10.177
MA0144.10.377
MA0145.10.0149
MA0146.10.24
MA0147.10.0833
MA0148.10.249
MA0149.10.408
MA0150.10.612
MA0152.10.338
MA0153.10.334
MA0154.10.54
MA0155.10.717
MA0156.13.0597e-4
MA0157.10.059
MA0159.10.172
MA0160.10.249
MA0162.10.0249
MA0163.10.84
MA0164.10.239
MA0258.10.528
MA0259.10.609



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11972

Novel motifP-value
10.899
100.213
1000.85
1010.0861
1020.253
1030.173
1040.663
1050.82
1060.037
1070.176
1080.0344
1090.0475
110.613
1100.415
1110.43
1120.202
1130.758
1140.32
1150.0189
1160.42
1170.443
1180.914
1190.826
120.215
1200.00933
1210.824
1220.758
1230.336
1240.151
1250.168
1260.83
1270.62
1280.206
1290.0859
130.469
1300.0559
1310.965
1320.14
1330.107
1340.152
1350.632
1360.0406
1370.03
1380.982
1390.707
140.992
1400.126
1410.95
1420.885
1430.998
1440.549
1450.583
1460.44
1470.549
1480.995
1490.255
150.638
1500.227
1510.276
1520.00355
1530.981
1540.755
1550.802
1560.638
1570.627
1580.0477
1590.75
160.0271
1600.951
1610.821
1620.327
1630.944
1640.479
1650.82
1660.574
1670.214
1680.377
1690.102
170.335
180.7
190.502
20.0243
200.736
210.816
220.592
230.385
240.132
250.536
260.902
270.279
280.823
290.366
30.515
300.172
310.609
320.414
330.383
340.53
350.386
360.0473
370.127
380.764
390.219
40.681
400.421
410.505
420.665
430.863
440.0494
450.223
460.721
470.486
480.366
490.237
50.664
500.619
510.894
520.256
530.168
540.734
550.35
560.736
570.966
580.782
590.104
60.279
600.403
610.987
620.693
630.227
640.906
650.577
660.431
670.525
680.338
690.145
70.864
700.0348
710.863
720.868
730.00175
740.0246
750.478
760.966
770.00552
780.0622
790.105
80.464
800.0802
810.684
820.25
830.0811
840.606
850.146
860.736
870.00754
880.652
890.0215
90.686
900.578
910.367
920.534
930.578
940.303
950.068
960.605
970.634
980.781
990.0397



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11972


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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