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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002367,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0005156,UBERON:0000077,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0000161,UBERON:0000162,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003102,UBERON:0003929,UBERON:0003104,UBERON:0010147,UBERON:0005256,UBERON:0000925,UBERON:0006598,UBERON:0009846,UBERON:0004185,UBERON:0005157,UBERON:0003937,UBERON:0005399,UBERON:0002532,UBERON:0003353,UBERON:0004902,UBERON:0001555,UBERON:0001008,UBERON:0003101,UBERON:0004122,UBERON:0001353,UBERON:0000163,UBERON:0000079,UBERON:0007026,UBERON:0006866,UBERON:0009142,UBERON:0001046,UBERON:0000164,UBERON:0003064,UBERON:0006595,UBERON:0006603,UBERON:0000931,UBERON:0003820,UBERON:0009847
|DRA_sample_Accession=CAGE@SAMD00004800
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000499,CL:0000004,CL:0000134,CL:0000255,CL:0002622
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004800
|accession_numbers=CAGE;DRX008423;DRR009295;DRZ000720;DRZ002105;DRZ012070;DRZ013455
|accession_numbers_RNASeq=sRNA-Seq;DRX037200;DRR041566;DRZ007208
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0002384,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000255,CL:0002622
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000277
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr16:86544113..86544145,+!p1@FOXF1!2.14!166.43!FOXF1;;chr6:134210243..134210257,+!p1@TCF21!1.88!74.66!TCF21;;chr15:57511609..57511651,+!p2@TCF12!1.77!94.14!TCF12;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!150.41!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.36!67.19!TBX2;;chr1:170633348..170633399,+!p2@PRRX1!1.31!26.04!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!1.28!68.28!SIX1;;chr3:141121847..141121868,+!p5@ZBTB38!1.24!24.95!ZBTB38;;chr7:27192185..27192209,-!p1@HOXA3!1.19!14.57!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!1.19!14.57!HOXA11;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.13!CREB3L1;;chr10:28034739..28034756,-!p1@MKX!1.17!13.84!MKX;;chr6:34204921..34204939,+!p3@HMGA1!1.14!382.39!HMGA1;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.48!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!1.06!34.42!TWIST2;;chr17:1959369..1959388,+!p2@HIC1!1.06!27.68!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!1.03!46.07!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.03!26.59!HMGA2;;chr7:27224795..27224840,-!p2@HOXA11!1.03!9.65!HOXA11;;chr17:59477275..59477286,+!p3@TBX2!0.99!11.84!TBX2;;chr3:141121820..141121838,+!p9@ZBTB38!0.99!8.74!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!0.98!8.56!HOXA9;;chr5:92918919..92918942,+!p1@NR2F1!0.97!37.87!NR2F1;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.47!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!0.96!9.29!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.60!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.40!OSR1;;chr7:27239703..27239715,-!p1@HOXA13!0.95!7.83!HOXA13;;chr3:128206762..128206781,-!p2@GATA2!0.93!48.25!GATA2;;chr11:65687362..65687436,+!p3@DRAP1!0.93!35.51!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.93!9.83!DRAP1;;chr15:96873984..96873999,+!p3@NR2F2!0.91!54.45!NR2F2;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.77!FOSL1;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.10!HOXA9;;chr15:42749722..42749739,-!p2@ZFP106!0.90!12.75!ZFP106;;chr17:59477197..59477212,+!p2@TBX2!0.90!12.38!TBX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.47!GLIS1;;chr18:19749541..19749557,+!p1@GATA6!0.89!22.22!GATA6;;chr5:321810..321877,+!p1@AHRR!0.89!22.22!AHRR;;chr3:25469724..25469773,+!p1@RARB!0.88!9.65!RARB;;chr7:27213893..27213954,-!p1@HOXA10!0.88!6.56!HOXA10;;chr15:57511589..57511608,+!p4@TCF12!0.88!6.56!TCF12;;chr2:239756739..239756755,+!p2@TWIST2!0.87!11.29!TWIST2;;chr11:65667846..65667868,-!p1@FOSL1!0.86!175.35!FOSL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.86!16.93!ZFPM2;;chr7:19157248..19157268,-!p1@TWIST1!0.83!16.75!TWIST1;;chr15:96874012..96874042,+!p2@NR2F2!0.82!54.63!NR2F2;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.83!DRAP1;;chr11:46333934..46333963,+!p5@CREB3L1!0.82!5.64!CREB3L1;;chr9:132427883..132427951,+!p2@PRRX2!0.82!5.64!PRRX2;;chr14:33403881..33403924,+!p1@NPAS3!0.81!5.46!NPAS3;;chr12:66218836..66218888,+!p1@HMGA2!0.80!53.72!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.80!14.02!EBF1;;chr9:132427972..132428056,+!p1@PRRX2!0.80!7.10!PRRX2;;chr3:141150883..141150961,+!p6@ZBTB38!0.80!5.28!ZBTB38;;chr4:81105027..81105039,+!p3@PRDM8!0.78!6.01!PRDM8;;chr3:128212033..128212051,-!p1@GATA2!0.77!4.92!GATA2;;chr3:141121871..141121885,+!p13@ZBTB38!0.77!4.92!ZBTB38;;chr10:63853436..63853442,+!p4@ARID5B!0.75!27.50!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.74!68.28!ARID5B;;chr12:66218183..66218209,+!p4@HMGA2!0.74!9.29!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!0.74!4.55!KDM5D;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.37!ZFY;;chr7:27239740..27239759,-!p2@HOXA13!0.73!4.37!HOXA13;;chr15:96874145..96874166,+!p7@NR2F2!0.72!8.74!NR2F2;;chr2:66662895..66662907,+!p3@MEIS1!0.72!5.46!MEIS1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.01!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.55!PRRX1;;chr5:92918956..92918969,+!p4@NR2F1!0.71!4.55!NR2F1;;chr6:34204672..34204692,+!p1@HMGA1!0.70!514.95!HMGA1;;chr3:12329358..12329393,+!p3@PPARG!0.70!10.93!PPARG;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.64!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.70!4.01!SMAD3;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.65!PPARG;;chr12:77459306..77459365,-!p1@E2F7!0.68!54.26!E2F7;;chr1:8483878..8483907,-!p4@RERE!0.68!16.39!RERE;;chr16:86612320..86612394,+!p1@FOXL1!0.68!3.82!FOXL1;;chr17:1958388..1958404,+!p1@HIC1!0.67!26.95!HIC1;;chr1:170633058..170633084,+!p5@PRRX1!0.67!3.64!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.67!3.64!PURA;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.64!HOXA7;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.64!CREB3L1;;chr2:66662249..66662267,+!p2@MEIS1!0.66!15.48!MEIS1;;chr2:185463247..185463263,+!p1@ZNF804A!0.66!6.92!ZNF804A;;chr5:92919100..92919135,+!p3@NR2F1!0.66!4.55!NR2F1;;chr7:28220198..28220269,-!p2@JAZF1!0.65!36.42!JAZF1;;chr2:66662281..66662308,+!p1@MEIS1!0.65!13.66!MEIS1;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.47!FOXC2;;chr15:96874244..96874259,+!p5@NR2F2!0.65!9.29!NR2F2;;chr3:25469815..25469866,+!p3@RARB!0.65!3.46!RARB;;chr10:28032421..28032494,-!p2@MKX!0.65!3.46!MKX;;chr11:46332679..46332695,+!p12@CREB3L1!0.65!3.46!CREB3L1;;chr11:65687158..65687216,+!p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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002622;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Stromal%2520Cells%252c%2520donor2.CNhs11973.11332-117E9.hg38.nobarcode.ctss.bed.gz
|id=FF:11332-117E9
|id=FF:11332-117E9
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000277
|is_a=EFO:0002091;;FF:0000277
|is_obsolete=
|library_id=CNhs11973
|library_id_phase_based=2:CNhs11973
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11332
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.CGTACG.11332
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11332
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.CGTACG.11332
|name=Prostate Stromal Cells, donor2
|name=Prostate Stromal Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11973,LSID836,release011,COMPLETED
|profile_hcage=CNhs11973,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|profile_srnaseq=SRhi10012,,,
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|rna_box=117
|rna_box=117
|rna_catalog_number=N/A
|rna_catalog_number=N/A
Line 54: Line 80:
|rna_rin=10
|rna_rin=10
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=117E9
|rna_tube_id=1.17E+11
|rna_weight_ug=63.8
|rna_weight_ug=63.8
|rnaseq_library_id=SRhi10012.CGTACG
|sample_age=24
|sample_age=24
|sample_category=primary cells
|sample_cell_catalog=CC-2508
|sample_cell_catalog=CC-2508
|sample_cell_line=
|sample_cell_line=
Line 77: Line 105:
|sample_tissue=prostate
|sample_tissue=prostate
|top_motifs=ALX4:2.07714028941;TAL1_TCF{3,4,12}:1.87430519505;UFEwm:1.86495777062;NKX2-2,8:1.73989258974;KLF4:1.37924870087;POU3F1..4:1.32380169915;PAX1,9:1.26289758991;GZF1:1.25372191675;AIRE:1.22098207358;ZNF238:1.2182203062;XBP1:1.21704314967;EVI1:1.21036281304;ZNF384:1.18566840744;HSF1,2:1.15348434387;EN1,2:1.10590486392;ESR1:1.09144085175;TOPORS:1.0602591926;MYBL2:1.05629113642;HES1:1.04531559142;PAX4:1.02068057672;NKX3-1:0.963513145423;PPARG:0.87687975329;TEF:0.829830331462;NFE2L1:0.820520221795;FOXD3:0.817396641228;GFI1B:0.762563947722;NR3C1:0.751182936396;SRF:0.72894183298;HOX{A5,B5}:0.708941405302;YY1:0.686412325378;RXR{A,B,G}:0.674585117085;TFAP4:0.653963826545;GATA4:0.64886154594;TEAD1:0.648203057824;ZIC1..3:0.61442474536;HMX1:0.607792708915;NR1H4:0.602844269018;CDC5L:0.588849662214;MYB:0.582064744777;ZNF423:0.577547369488;TBP:0.514783346629;GFI1:0.513364037526;MAFB:0.501993707032;TP53:0.495860438594;GLI1..3:0.487909567538;GTF2A1,2:0.468327562822;RXRA_VDR{dimer}:0.455744823222;TLX1..3_NFIC{dimer}:0.418951049083;NKX6-1,2:0.412271779762;PDX1:0.397562811581;E2F1..5:0.386135028965;EBF1:0.34368217079;STAT5{A,B}:0.330377699516;SPZ1:0.303389354762;HMGA1,2:0.300891473459;FOXL1:0.30005303627;bHLH_family:0.290553410068;PRDM1:0.284511712166;MTE{core}:0.26972453251;ATF6:0.261455997474;XCPE1{core}:0.258992373026;IKZF1:0.255851037635;HNF4A_NR2F1,2:0.240234436791;HOX{A4,D4}:0.228008231958;PAX8:0.222347075616;ONECUT1,2:0.217103124777;HLF:0.2120174635;FOX{I1,J2}:0.207463194107;CDX1,2,4:0.19245710971;TFCP2:0.191461543885;TBX4,5:0.191048329561;HOXA9_MEIS1:0.182220708982;LHX3,4:0.17758968693;TFDP1:0.177568707719;NFIX:0.170479286108;NR6A1:0.156411989943;POU5F1:0.147866729467;PAX5:0.147429842269;ELK1,4_GABP{A,B1}:0.144481651423;GTF2I:0.127762551937;PBX1:0.124233791178;BACH2:0.119580986339;NHLH1,2:0.112152971333;CRX:0.0982534199826;FOXQ1:0.0859983875805;NFE2L2:0.0762733638449;ZBTB6:0.0685953828987;PATZ1:0.0658417263692;ZNF143:0.0599889412985;MZF1:0.055250000472;IRF1,2:0.0431222929517;ARID5B:0.017670686461;NR5A1,2:0.0146446694346;MYFfamily:0.00798429243734;ZBTB16:-0.00072205566508;NFY{A,B,C}:-0.00498176205114;CEBPA,B_DDIT3:-0.029525621475;ESRRA:-0.0422119883508;FOS_FOS{B,L1}_JUN{B,D}:-0.0471759331748;LEF1_TCF7_TCF7L1,2:-0.054970763502;NRF1:-0.068339505905;HIC1:-0.110629391937;PAX3,7:-0.112714343011;RFX1:-0.13040609029;DBP:-0.14527501644;AHR_ARNT_ARNT2:-0.15926108056;HNF1A:-0.163558624536;TFAP2B:-0.172331414777;NANOG{mouse}:-0.17260503591;DMAP1_NCOR{1,2}_SMARC:-0.179213375698;NFE2:-0.18167706383;FOXO1,3,4:-0.200703471813;FOSL2:-0.205251364316;FOXP1:-0.219993850451;PITX1..3:-0.221455591922;NFKB1_REL_RELA:-0.247863792432;REST:-0.250943978212;NKX3-2:-0.25307607422;FOXM1:-0.253953706669;ZNF148:-0.259487959367;LMO2:-0.260457646565;ZFP161:-0.264318854378;SOX17:-0.276564114895;EGR1..3:-0.290302232001;RREB1:-0.293057661631;MAZ:-0.317602411873;HAND1,2:-0.31812704417;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.328992666553;TFAP2{A,C}:-0.335800369049;NFATC1..3:-0.353709316257;T:-0.374084761439;OCT4_SOX2{dimer}:-0.384603116469;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.385785823016;POU2F1..3:-0.391556791096;RUNX1..3:-0.436322797734;SMAD1..7,9:-0.4527431695;AR:-0.466894228243;SP1:-0.473088499421;CUX2:-0.483418721574;BPTF:-0.487448188522;STAT2,4,6:-0.490757427615;IRF7:-0.505745095608;FOXP3:-0.517468126203;MTF1:-0.519708200062;NKX2-1,4:-0.534471121698;CREB1:-0.554270856135;SPI1:-0.572581103647;NFIL3:-0.578049837028;ELF1,2,4:-0.578532723384;STAT1,3:-0.591823428607;POU1F1:-0.599850157437;PRRX1,2:-0.607473594609;SREBF1,2:-0.618626136618;BREu{core}:-0.629104619689;POU6F1:-0.66207103969;IKZF2:-0.663766540181;MED-1{core}:-0.666301202542;JUN:-0.685934978418;NKX2-3_NKX2-5:-0.688728535707;TLX2:-0.700348447783;MEF2{A,B,C,D}:-0.700438909885;ETS1,2:-0.701984900714;TGIF1:-0.732221291518;SOX2:-0.733232858536;SNAI1..3:-0.735422585644;ALX1:-0.743163770366;SOX5:-0.747412042452;GATA6:-0.752371922276;ADNP_IRX_SIX_ZHX:-0.755345737021;RFX2..5_RFXANK_RFXAP:-0.768377443542;SOX{8,9,10}:-0.770035220887;SPIB:-0.776480805056;MYOD1:-0.781515757707;GCM1,2:-0.840215906226;FOX{D1,D2}:-0.853760087767;ATF5_CREB3:-0.854817071094;ATF4:-0.874259461867;FOX{F1,F2,J1}:-0.875739197157;PAX2:-0.881149506609;HIF1A:-0.90033380557;FOXA2:-0.900497794107;RORA:-0.909871969443;ATF2:-0.917522765642;HBP1_HMGB_SSRP1_UBTF:-0.932313431637;EP300:-0.935424441369;PAX6:-1.02588621276;VSX1,2:-1.04687974462;ZEB1:-1.06481232579;FOXN1:-1.14964411318;HOX{A6,A7,B6,B7}:-1.1859013344;RBPJ:-1.19948117692;NANOG:-1.52462978325
|top_motifs=ALX4:2.07714028941;TAL1_TCF{3,4,12}:1.87430519505;UFEwm:1.86495777062;NKX2-2,8:1.73989258974;KLF4:1.37924870087;POU3F1..4:1.32380169915;PAX1,9:1.26289758991;GZF1:1.25372191675;AIRE:1.22098207358;ZNF238:1.2182203062;XBP1:1.21704314967;EVI1:1.21036281304;ZNF384:1.18566840744;HSF1,2:1.15348434387;EN1,2:1.10590486392;ESR1:1.09144085175;TOPORS:1.0602591926;MYBL2:1.05629113642;HES1:1.04531559142;PAX4:1.02068057672;NKX3-1:0.963513145423;PPARG:0.87687975329;TEF:0.829830331462;NFE2L1:0.820520221795;FOXD3:0.817396641228;GFI1B:0.762563947722;NR3C1:0.751182936396;SRF:0.72894183298;HOX{A5,B5}:0.708941405302;YY1:0.686412325378;RXR{A,B,G}:0.674585117085;TFAP4:0.653963826545;GATA4:0.64886154594;TEAD1:0.648203057824;ZIC1..3:0.61442474536;HMX1:0.607792708915;NR1H4:0.602844269018;CDC5L:0.588849662214;MYB:0.582064744777;ZNF423:0.577547369488;TBP:0.514783346629;GFI1:0.513364037526;MAFB:0.501993707032;TP53:0.495860438594;GLI1..3:0.487909567538;GTF2A1,2:0.468327562822;RXRA_VDR{dimer}:0.455744823222;TLX1..3_NFIC{dimer}:0.418951049083;NKX6-1,2:0.412271779762;PDX1:0.397562811581;E2F1..5:0.386135028965;EBF1:0.34368217079;STAT5{A,B}:0.330377699516;SPZ1:0.303389354762;HMGA1,2:0.300891473459;FOXL1:0.30005303627;bHLH_family:0.290553410068;PRDM1:0.284511712166;MTE{core}:0.26972453251;ATF6:0.261455997474;XCPE1{core}:0.258992373026;IKZF1:0.255851037635;HNF4A_NR2F1,2:0.240234436791;HOX{A4,D4}:0.228008231958;PAX8:0.222347075616;ONECUT1,2:0.217103124777;HLF:0.2120174635;FOX{I1,J2}:0.207463194107;CDX1,2,4:0.19245710971;TFCP2:0.191461543885;TBX4,5:0.191048329561;HOXA9_MEIS1:0.182220708982;LHX3,4:0.17758968693;TFDP1:0.177568707719;NFIX:0.170479286108;NR6A1:0.156411989943;POU5F1:0.147866729467;PAX5:0.147429842269;ELK1,4_GABP{A,B1}:0.144481651423;GTF2I:0.127762551937;PBX1:0.124233791178;BACH2:0.119580986339;NHLH1,2:0.112152971333;CRX:0.0982534199826;FOXQ1:0.0859983875805;NFE2L2:0.0762733638449;ZBTB6:0.0685953828987;PATZ1:0.0658417263692;ZNF143:0.0599889412985;MZF1:0.055250000472;IRF1,2:0.0431222929517;ARID5B:0.017670686461;NR5A1,2:0.0146446694346;MYFfamily:0.00798429243734;ZBTB16:-0.00072205566508;NFY{A,B,C}:-0.00498176205114;CEBPA,B_DDIT3:-0.029525621475;ESRRA:-0.0422119883508;FOS_FOS{B,L1}_JUN{B,D}:-0.0471759331748;LEF1_TCF7_TCF7L1,2:-0.054970763502;NRF1:-0.068339505905;HIC1:-0.110629391937;PAX3,7:-0.112714343011;RFX1:-0.13040609029;DBP:-0.14527501644;AHR_ARNT_ARNT2:-0.15926108056;HNF1A:-0.163558624536;TFAP2B:-0.172331414777;NANOG{mouse}:-0.17260503591;DMAP1_NCOR{1,2}_SMARC:-0.179213375698;NFE2:-0.18167706383;FOXO1,3,4:-0.200703471813;FOSL2:-0.205251364316;FOXP1:-0.219993850451;PITX1..3:-0.221455591922;NFKB1_REL_RELA:-0.247863792432;REST:-0.250943978212;NKX3-2:-0.25307607422;FOXM1:-0.253953706669;ZNF148:-0.259487959367;LMO2:-0.260457646565;ZFP161:-0.264318854378;SOX17:-0.276564114895;EGR1..3:-0.290302232001;RREB1:-0.293057661631;MAZ:-0.317602411873;HAND1,2:-0.31812704417;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.328992666553;TFAP2{A,C}:-0.335800369049;NFATC1..3:-0.353709316257;T:-0.374084761439;OCT4_SOX2{dimer}:-0.384603116469;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.385785823016;POU2F1..3:-0.391556791096;RUNX1..3:-0.436322797734;SMAD1..7,9:-0.4527431695;AR:-0.466894228243;SP1:-0.473088499421;CUX2:-0.483418721574;BPTF:-0.487448188522;STAT2,4,6:-0.490757427615;IRF7:-0.505745095608;FOXP3:-0.517468126203;MTF1:-0.519708200062;NKX2-1,4:-0.534471121698;CREB1:-0.554270856135;SPI1:-0.572581103647;NFIL3:-0.578049837028;ELF1,2,4:-0.578532723384;STAT1,3:-0.591823428607;POU1F1:-0.599850157437;PRRX1,2:-0.607473594609;SREBF1,2:-0.618626136618;BREu{core}:-0.629104619689;POU6F1:-0.66207103969;IKZF2:-0.663766540181;MED-1{core}:-0.666301202542;JUN:-0.685934978418;NKX2-3_NKX2-5:-0.688728535707;TLX2:-0.700348447783;MEF2{A,B,C,D}:-0.700438909885;ETS1,2:-0.701984900714;TGIF1:-0.732221291518;SOX2:-0.733232858536;SNAI1..3:-0.735422585644;ALX1:-0.743163770366;SOX5:-0.747412042452;GATA6:-0.752371922276;ADNP_IRX_SIX_ZHX:-0.755345737021;RFX2..5_RFXANK_RFXAP:-0.768377443542;SOX{8,9,10}:-0.770035220887;SPIB:-0.776480805056;MYOD1:-0.781515757707;GCM1,2:-0.840215906226;FOX{D1,D2}:-0.853760087767;ATF5_CREB3:-0.854817071094;ATF4:-0.874259461867;FOX{F1,F2,J1}:-0.875739197157;PAX2:-0.881149506609;HIF1A:-0.90033380557;FOXA2:-0.900497794107;RORA:-0.909871969443;ATF2:-0.917522765642;HBP1_HMGB_SSRP1_UBTF:-0.932313431637;EP300:-0.935424441369;PAX6:-1.02588621276;VSX1,2:-1.04687974462;ZEB1:-1.06481232579;FOXN1:-1.14964411318;HOX{A6,A7,B6,B7}:-1.1859013344;RBPJ:-1.19948117692;NANOG:-1.52462978325
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11332-117E9;search_select_hide=table117:FF:11332-117E9
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Prostate Stromal Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11973
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage24 years old adult
sexmale
age24
cell typeprostatic stromal cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004800
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11973 CAGE DRX008423 DRR009295
Accession ID Hg19

Library idBAMCTSS
CNhs11973 DRZ000720 DRZ002105
Accession ID Hg38

Library idBAMCTSS
CNhs11973 DRZ012070 DRZ013455
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004800
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.CGTACG sRNA-Seq DRX037200 DRR041566
Accession ID Hg19

Library idBAMCTSS
SRhi10012.CGTACG DRZ007208


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.171
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.346
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0994
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0727
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0181
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.173
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.13
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.744
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0511
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.232
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.583
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00782
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.45
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.135
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0136
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.386
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.189
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0727
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.281
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.464
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.45
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.321
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.572
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0231
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.421
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11973

Jaspar motifP-value
MA0002.20.0513
MA0003.10.857
MA0004.10.573
MA0006.10.447
MA0007.10.451
MA0009.10.857
MA0014.10.191
MA0017.10.797
MA0018.22.86681e-7
MA0019.10.134
MA0024.10.257
MA0025.10.00661
MA0027.10.894
MA0028.10.83
MA0029.10.739
MA0030.10.00297
MA0031.10.00819
MA0035.20.174
MA0038.10.52
MA0039.20.0353
MA0040.10.806
MA0041.10.204
MA0042.10.429
MA0043.13.03928e-4
MA0046.10.0383
MA0047.20.049
MA0048.10.0534
MA0050.10.17
MA0051.10.584
MA0052.10.00166
MA0055.10.43
MA0057.10.155
MA0058.10.173
MA0059.10.431
MA0060.10.00597
MA0061.10.786
MA0062.20.001
MA0065.20.258
MA0066.10.377
MA0067.10.00257
MA0068.10.287
MA0069.10.0673
MA0070.10.533
MA0071.10.476
MA0072.10.307
MA0073.10.656
MA0074.10.0823
MA0076.10.263
MA0077.10.322
MA0078.10.468
MA0079.20.126
MA0080.22.01693e-9
MA0081.10.0184
MA0083.10.052
MA0084.10.152
MA0087.10.74
MA0088.10.321
MA0090.10.181
MA0091.10.00584
MA0092.10.626
MA0093.10.48
MA0099.20.0228
MA0100.10.484
MA0101.10.0626
MA0102.20.0404
MA0103.10.0442
MA0104.20.788
MA0105.10.0529
MA0106.10.0498
MA0107.10.0186
MA0108.20.944
MA0111.10.867
MA0112.20.00303
MA0113.10.624
MA0114.10.406
MA0115.10.861
MA0116.10.026
MA0117.10.41
MA0119.10.0111
MA0122.10.138
MA0124.10.121
MA0125.10.666
MA0131.10.776
MA0135.10.0122
MA0136.16.43025e-11
MA0137.20.00357
MA0138.20.751
MA0139.10.663
MA0140.10.406
MA0141.10.338
MA0142.10.216
MA0143.10.782
MA0144.10.237
MA0145.10.803
MA0146.10.218
MA0147.10.713
MA0148.10.0603
MA0149.10.329
MA0150.10.0657
MA0152.10.211
MA0153.10.576
MA0154.10.386
MA0155.10.442
MA0156.15.56816e-10
MA0157.10.037
MA0159.10.87
MA0160.10.283
MA0162.10.243
MA0163.12.94248e-7
MA0164.10.953
MA0258.10.219
MA0259.10.902



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11973

Novel motifP-value
10.425
100.0317
1000.0408
1010.481
1020.26
1030.474
1040.47
1050.0294
1060.683
1070.0486
1080.358
1090.143
110.22
1100.0868
1110.747
1120.618
1130.518
1140.849
1150.0093
1160.00275
1170.302
1180.386
1190.967
120.071
1200.0338
1210.304
1220.00792
1230.123
1240.772
1250.18
1260.966
1270.976
1280.773
1290.122
130.248
1300.587
1310.369
1320.525
1330.529
1340.413
1350.256
1360.0816
1370.311
1380.356
1390.884
140.061
1400.563
1410.328
1420.332
1430.651
1440.591
1450.702
1460.124
1470.0663
1480.39
1490.137
150.597
1500.225
1510.935
1520.062
1530.856
1540.566
1550.198
1560.772
1570.166
1580.0233
1590.47
160.0343
1600.418
1610.575
1620.437
1630.885
1640.0735
1650.943
1660.0287
1670.664
1680.185
1690.0127
170.915
180.123
190.00189
20.551
200.745
210.0278
220.525
230.932
240.732
250.437
260.126
270.832
280.156
290.15
30.326
300.87
310.702
324.44196e-11
330.754
340.649
350.675
360.456
370.0228
380.48
390.334
40.137
400.985
410.0264
420.886
430.881
440.00761
450.195
460.239
470.565
480.54
490.569
50.348
500.7
510.845
520.772
530.26
540.762
550.44
560.761
570.746
580.664
590.118
60.226
600.895
610.901
620.776
630.371
640.868
650.624
660.772
670.792
680.694
690.558
70.389
700.929
710.0206
720.434
730.0187
740.0565
750.145
760.786
770.147
780.36
790.00174
80.0185
800.0181
810.704
820.902
830.95
840.975
850.918
860.371
870.124
880.308
890.0887
90.975
900.79
910.839
920.781
930.241
940.388
950.0604
960.588
970.898
980.178
990.00233



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11973


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002622 (prostate stromal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0002384 (connective tissue)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000277 (human prostate stromal cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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