FF:11367-117I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005759 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005759 | ||
|accession_numbers=CAGE;DRX008508;DRR009380;DRZ000805;DRZ002190;DRZ012155;DRZ013540 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037032;DRR041398;DRZ007040 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000176 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor2.CNhs11991.11367-117I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor2.CNhs11991.11367-117I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor2.CNhs11991.11367-117I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor2.CNhs11991.11367-117I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor2.CNhs11991.11367-117I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11367-117I8 | |id=FF:11367-117I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000176 | ||
|is_obsolete= | |||
|library_id=CNhs11991 | |||
|library_id_phase_based=2:CNhs11991 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11367 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GGTAGC.11367 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11367 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GGTAGC.11367 | |||
|name=Smooth Muscle Cells - Umbilical Artery, donor2 | |name=Smooth Muscle Cells - Umbilical Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11991,LSID837,release011,COMPLETED | |profile_hcage=CNhs11991,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA252-R10n | |rna_catalog_number=CA252-R10n | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117I8 | |rna_tube_id=117I8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.GGTAGC | |||
|sample_age=neonatal | |sample_age=neonatal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.96868448377116e-222!GO:0005737;cytoplasm;2.69654897578526e-210!GO:0043226;organelle;2.46098973392863e-167!GO:0043229;intracellular organelle;4.28405756137612e-167!GO:0043231;intracellular membrane-bound organelle;4.64166294000734e-157!GO:0043227;membrane-bound organelle;4.64166294000734e-157!GO:0044444;cytoplasmic part;3.02916985693172e-144!GO:0044422;organelle part;1.03368510881294e-137!GO:0044446;intracellular organelle part;5.30151949097667e-136!GO:0005515;protein binding;5.38578147820062e-102!GO:0032991;macromolecular complex;6.81715575911407e-102!GO:0030529;ribonucleoprotein complex;5.72210621588056e-83!GO:0044237;cellular metabolic process;1.47313606090158e-75!GO:0044238;primary metabolic process;2.68090036106048e-75!GO:0005739;mitochondrion;2.0966300148901e-68!GO:0043170;macromolecule metabolic process;4.11588816466234e-67!GO:0043233;organelle lumen;5.48411839058299e-65!GO:0031974;membrane-enclosed lumen;5.48411839058299e-65!GO:0044428;nuclear part;1.29737414473322e-60!GO:0003723;RNA binding;8.63432966330356e-57!GO:0019538;protein metabolic process;1.4861798085302e-55!GO:0006412;translation;9.40287148410065e-55!GO:0005840;ribosome;3.32355979527054e-54!GO:0016043;cellular component organization and biogenesis;1.15767905785893e-53!GO:0043234;protein complex;4.16391553375928e-53!GO:0031090;organelle membrane;2.06911023516266e-51!GO:0005634;nucleus;8.17494831661833e-51!GO:0044260;cellular macromolecule metabolic process;1.65024850331372e-49!GO:0044267;cellular protein metabolic process;1.44201383453113e-48!GO:0003735;structural constituent of ribosome;1.52698073939574e-48!GO:0009058;biosynthetic process;1.73416314128494e-47!GO:0044429;mitochondrial part;1.17159604795326e-46!GO:0044249;cellular biosynthetic process;1.46233533034671e-44!GO:0009059;macromolecule biosynthetic process;1.67299570575734e-44!GO:0005829;cytosol;2.18117423157875e-44!GO:0015031;protein transport;2.08602740118337e-42!GO:0031967;organelle envelope;2.65567056935389e-42!GO:0031975;envelope;7.08685464505256e-42!GO:0033279;ribosomal subunit;1.35780012953402e-41!GO:0033036;macromolecule localization;2.95402728344456e-41!GO:0006396;RNA processing;1.12388102426738e-39!GO:0045184;establishment of protein localization;2.38810912392429e-39!GO:0008104;protein localization;4.09217274785184e-39!GO:0031981;nuclear lumen;5.66451832201241e-37!GO:0046907;intracellular transport;6.32842015338526e-36!GO:0043228;non-membrane-bound organelle;7.97798153539049e-36!GO:0043232;intracellular non-membrane-bound organelle;7.97798153539049e-36!GO:0006996;organelle organization and biogenesis;8.63937779160664e-35!GO:0065003;macromolecular complex assembly;6.23019145994276e-32!GO:0005740;mitochondrial envelope;7.18136281725258e-32!GO:0043283;biopolymer metabolic process;1.66951799888827e-30!GO:0031966;mitochondrial membrane;3.18032347490169e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.55292326402873e-30!GO:0016071;mRNA metabolic process;1.02564120832776e-29!GO:0006886;intracellular protein transport;1.84547890503709e-29!GO:0022607;cellular component assembly;2.12369283347208e-29!GO:0008380;RNA splicing;7.83682361799859e-29!GO:0019866;organelle inner membrane;1.24494039672404e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.43336985069014e-27!GO:0005743;mitochondrial inner membrane;5.71665235918344e-27!GO:0010467;gene expression;1.1358589713872e-26!GO:0044445;cytosolic part;1.1942335491177e-25!GO:0006397;mRNA processing;1.21160707182685e-25!GO:0051649;establishment of cellular localization;1.2505735822733e-24!GO:0051641;cellular localization;1.67039496855643e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.6285959333835e-23!GO:0006119;oxidative phosphorylation;1.82365427097331e-22!GO:0015934;large ribosomal subunit;2.3179489687834e-22!GO:0044455;mitochondrial membrane part;4.16800862188757e-22!GO:0005681;spliceosome;1.2752473658372e-21!GO:0005654;nucleoplasm;1.80146007622506e-21!GO:0005783;endoplasmic reticulum;5.87004002888539e-21!GO:0006259;DNA metabolic process;1.06082530844573e-20!GO:0015935;small ribosomal subunit;3.04783302453039e-20!GO:0012505;endomembrane system;1.85238537276942e-19!GO:0012501;programmed cell death;4.77856605196572e-19!GO:0006457;protein folding;8.3832044678427e-19!GO:0007049;cell cycle;9.24547893627273e-19!GO:0006915;apoptosis;1.19082349581683e-18!GO:0048770;pigment granule;2.48439812676526e-18!GO:0042470;melanosome;2.48439812676526e-18!GO:0031980;mitochondrial lumen;3.07942746555385e-18!GO:0005759;mitochondrial matrix;3.07942746555385e-18!GO:0000166;nucleotide binding;3.53120939136763e-18!GO:0044451;nucleoplasm part;7.86674080428523e-18!GO:0005746;mitochondrial respiratory chain;8.3717778678364e-18!GO:0008219;cell death;2.57632625911726e-17!GO:0016265;death;2.57632625911726e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.25999802214453e-17!GO:0008134;transcription factor binding;1.32200973077952e-16!GO:0016462;pyrophosphatase activity;1.93084834395816e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.52555660288939e-16!GO:0005730;nucleolus;3.26490415012562e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.28857267644852e-16!GO:0044432;endoplasmic reticulum part;3.30778533299734e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;4.40228288062737e-16!GO:0051186;cofactor metabolic process;6.21476382888538e-16!GO:0005794;Golgi apparatus;6.61675074758572e-16!GO:0017111;nucleoside-triphosphatase activity;7.08305843753114e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.99564884869682e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.01454919319184e-15!GO:0003954;NADH dehydrogenase activity;1.01454919319184e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.01454919319184e-15!GO:0022618;protein-RNA complex assembly;3.22251332673888e-15!GO:0006605;protein targeting;3.59202078088678e-15!GO:0005761;mitochondrial ribosome;4.08242377612306e-15!GO:0000313;organellar ribosome;4.08242377612306e-15!GO:0022402;cell cycle process;4.40301398980734e-15!GO:0044265;cellular macromolecule catabolic process;8.38880863285854e-15!GO:0043285;biopolymer catabolic process;1.08384284823997e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.20287164340849e-14!GO:0016874;ligase activity;1.31892922249674e-14!GO:0000278;mitotic cell cycle;1.95421238910591e-14!GO:0016192;vesicle-mediated transport;2.06441091345736e-14!GO:0009057;macromolecule catabolic process;2.39142351173392e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.44223089948505e-14!GO:0043412;biopolymer modification;6.44916379781319e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.46011959699999e-14!GO:0042773;ATP synthesis coupled electron transport;9.46011959699999e-14!GO:0030964;NADH dehydrogenase complex (quinone);9.65264223521526e-14!GO:0045271;respiratory chain complex I;9.65264223521526e-14!GO:0005747;mitochondrial respiratory chain complex I;9.65264223521526e-14!GO:0048523;negative regulation of cellular process;1.63845889665363e-13!GO:0009055;electron carrier activity;2.12492192623566e-13!GO:0032553;ribonucleotide binding;2.33006071713062e-13!GO:0032555;purine ribonucleotide binding;2.33006071713062e-13!GO:0017076;purine nucleotide binding;2.53947764378923e-13!GO:0044248;cellular catabolic process;3.4454165755279e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.45103525065247e-13!GO:0008135;translation factor activity, nucleic acid binding;5.42768974220617e-13!GO:0051082;unfolded protein binding;6.80307315061774e-13!GO:0042254;ribosome biogenesis and assembly;6.96907487619298e-13!GO:0048193;Golgi vesicle transport;1.52842378038941e-12!GO:0006464;protein modification process;1.55749981599781e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.02465815001827e-12!GO:0006732;coenzyme metabolic process;2.1131809189125e-12!GO:0043067;regulation of programmed cell death;2.62323420486549e-12!GO:0042981;regulation of apoptosis;2.95225061058459e-12!GO:0019941;modification-dependent protein catabolic process;3.01878899380631e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.01878899380631e-12!GO:0006512;ubiquitin cycle;3.18395699905265e-12!GO:0030163;protein catabolic process;3.60498374187342e-12!GO:0044257;cellular protein catabolic process;5.01041576682803e-12!GO:0006511;ubiquitin-dependent protein catabolic process;5.20463416138783e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.34968176602339e-12!GO:0000375;RNA splicing, via transesterification reactions;5.34968176602339e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.34968176602339e-12!GO:0048519;negative regulation of biological process;6.68287004238835e-12!GO:0005793;ER-Golgi intermediate compartment;1.80134395389789e-11!GO:0005635;nuclear envelope;1.92001701418425e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.27089681140496e-11!GO:0005789;endoplasmic reticulum membrane;4.9922337645748e-11!GO:0009259;ribonucleotide metabolic process;5.04086354915383e-11!GO:0006913;nucleocytoplasmic transport;6.32682741291821e-11!GO:0005524;ATP binding;1.24364924165514e-10!GO:0051169;nuclear transport;1.64332544131272e-10!GO:0006461;protein complex assembly;2.53288739338409e-10!GO:0006163;purine nucleotide metabolic process;2.93535492287712e-10!GO:0032559;adenyl ribonucleotide binding;2.93790992942336e-10!GO:0009150;purine ribonucleotide metabolic process;2.95529164485778e-10!GO:0043687;post-translational protein modification;3.13283826813008e-10!GO:0003743;translation initiation factor activity;3.45147775686609e-10!GO:0031965;nuclear membrane;4.02730446604646e-10!GO:0044453;nuclear membrane part;4.02730446604646e-10!GO:0030554;adenyl nucleotide binding;4.08080247601078e-10!GO:0051726;regulation of cell cycle;4.26320390684118e-10!GO:0051246;regulation of protein metabolic process;5.03468541570627e-10!GO:0000074;regulation of progression through cell cycle;5.35363438340637e-10!GO:0000087;M phase of mitotic cell cycle;6.4439903378263e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.4439903378263e-10!GO:0003712;transcription cofactor activity;6.73778609165378e-10!GO:0007067;mitosis;7.30309509788526e-10!GO:0022403;cell cycle phase;1.08841186044453e-09!GO:0009260;ribonucleotide biosynthetic process;1.27690203992552e-09!GO:0017038;protein import;1.74492428441493e-09!GO:0006413;translational initiation;2.03276489586628e-09!GO:0006399;tRNA metabolic process;2.2043888784158e-09!GO:0005694;chromosome;2.42516474599833e-09!GO:0008565;protein transporter activity;2.50744901597138e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.60581609351205e-09!GO:0006164;purine nucleotide biosynthetic process;2.60581609351205e-09!GO:0006974;response to DNA damage stimulus;2.62476631444557e-09!GO:0051276;chromosome organization and biogenesis;2.6647707017591e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.091242059092e-09!GO:0043069;negative regulation of programmed cell death;3.14979806125208e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.01170261107896e-09!GO:0044427;chromosomal part;5.00054293411719e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.21750353796012e-09!GO:0003676;nucleic acid binding;6.18814881750488e-09!GO:0009141;nucleoside triphosphate metabolic process;6.59849632885343e-09!GO:0043066;negative regulation of apoptosis;7.61148370547394e-09!GO:0016604;nuclear body;7.74741337219784e-09!GO:0006446;regulation of translational initiation;7.99144253674892e-09!GO:0009056;catabolic process;8.75059564377218e-09!GO:0009060;aerobic respiration;9.13999646471621e-09!GO:0006364;rRNA processing;1.02947690825376e-08!GO:0005768;endosome;1.02947690825376e-08!GO:0048522;positive regulation of cellular process;1.07747660505566e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.16103043560108e-08!GO:0006323;DNA packaging;1.26407303411051e-08!GO:0007005;mitochondrion organization and biogenesis;1.26407303411051e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.2826340103489e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.2826340103489e-08!GO:0006916;anti-apoptosis;1.34245884769342e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.39171725081788e-08!GO:0065004;protein-DNA complex assembly;2.12049919725737e-08!GO:0016072;rRNA metabolic process;2.13650038733249e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.26193285677222e-08!GO:0030036;actin cytoskeleton organization and biogenesis;2.33990069416064e-08!GO:0005643;nuclear pore;2.89822812430895e-08!GO:0030120;vesicle coat;3.25493001351301e-08!GO:0030662;coated vesicle membrane;3.25493001351301e-08!GO:0065002;intracellular protein transport across a membrane;3.56749658827341e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.72744155835259e-08!GO:0051188;cofactor biosynthetic process;3.81735632898112e-08!GO:0015986;ATP synthesis coupled proton transport;4.16566517407092e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.16566517407092e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.66228154844355e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.66228154844355e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.0155261904235e-08!GO:0006333;chromatin assembly or disassembly;5.64839662153091e-08!GO:0019829;cation-transporting ATPase activity;5.79406756016474e-08!GO:0045333;cellular respiration;5.79406756016474e-08!GO:0006366;transcription from RNA polymerase II promoter;6.04494588388554e-08!GO:0003924;GTPase activity;6.04971366085084e-08!GO:0006260;DNA replication;6.05950961363363e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.24889997038493e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.24889997038493e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.24889997038493e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.68276651134969e-08!GO:0006793;phosphorus metabolic process;9.00212260284973e-08!GO:0006796;phosphate metabolic process;9.00212260284973e-08!GO:0046034;ATP metabolic process;9.05516262143407e-08!GO:0006334;nucleosome assembly;9.37755273108116e-08!GO:0048475;coated membrane;9.40249697356933e-08!GO:0030117;membrane coat;9.40249697356933e-08!GO:0016491;oxidoreductase activity;9.41488387116661e-08!GO:0005788;endoplasmic reticulum lumen;1.07372669089718e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.14818395173281e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.14818395173281e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.23382105512125e-07!GO:0008639;small protein conjugating enzyme activity;1.28463190260574e-07!GO:0043038;amino acid activation;1.3466050323606e-07!GO:0006418;tRNA aminoacylation for protein translation;1.3466050323606e-07!GO:0043039;tRNA aminoacylation;1.3466050323606e-07!GO:0042623;ATPase activity, coupled;1.41508121624408e-07!GO:0051301;cell division;1.58437374243667e-07!GO:0009117;nucleotide metabolic process;1.70052534932693e-07!GO:0009719;response to endogenous stimulus;1.77866166001217e-07!GO:0030029;actin filament-based process;1.93539985389417e-07!GO:0019787;small conjugating protein ligase activity;1.95039527266147e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.95237455401626e-07!GO:0050794;regulation of cellular process;2.65529497332166e-07!GO:0004842;ubiquitin-protein ligase activity;2.66480331235324e-07!GO:0006281;DNA repair;2.88127530130322e-07!GO:0000785;chromatin;2.9160364356822e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.40586967008414e-07!GO:0016070;RNA metabolic process;3.47164358175068e-07!GO:0031252;leading edge;3.5200160672355e-07!GO:0031497;chromatin assembly;3.59034049724084e-07!GO:0006099;tricarboxylic acid cycle;4.64135231633099e-07!GO:0046356;acetyl-CoA catabolic process;4.64135231633099e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.94948981651518e-07!GO:0016887;ATPase activity;4.98622571671156e-07!GO:0007010;cytoskeleton organization and biogenesis;5.85330019100067e-07!GO:0044431;Golgi apparatus part;5.96567398720008e-07!GO:0016310;phosphorylation;5.96567398720008e-07!GO:0044440;endosomal part;7.16438292449113e-07!GO:0010008;endosome membrane;7.16438292449113e-07!GO:0006754;ATP biosynthetic process;7.36276527146445e-07!GO:0006753;nucleoside phosphate metabolic process;7.36276527146445e-07!GO:0046930;pore complex;7.60217108547645e-07!GO:0016740;transferase activity;9.69926419784977e-07!GO:0051170;nuclear import;9.69926419784977e-07!GO:0016607;nuclear speck;1.05339848654148e-06!GO:0048518;positive regulation of biological process;1.12645738935769e-06!GO:0005773;vacuole;1.13031974934204e-06!GO:0051187;cofactor catabolic process;1.38876805077959e-06!GO:0000279;M phase;1.55538982331471e-06!GO:0006606;protein import into nucleus;1.59125720517223e-06!GO:0009108;coenzyme biosynthetic process;1.59125720517223e-06!GO:0006950;response to stress;1.61509848874127e-06!GO:0045259;proton-transporting ATP synthase complex;1.69019286173573e-06!GO:0016881;acid-amino acid ligase activity;1.79218310098125e-06!GO:0006084;acetyl-CoA metabolic process;1.85440896533739e-06!GO:0008092;cytoskeletal protein binding;1.87050578739233e-06!GO:0031988;membrane-bound vesicle;2.08523324126622e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.33196995040283e-06!GO:0003714;transcription corepressor activity;2.63893401894678e-06!GO:0009109;coenzyme catabolic process;3.01028219906842e-06!GO:0001558;regulation of cell growth;3.33067795150846e-06!GO:0007243;protein kinase cascade;3.53085658804666e-06!GO:0004298;threonine endopeptidase activity;3.92480854721291e-06!GO:0031324;negative regulation of cellular metabolic process;4.47191293999248e-06!GO:0005525;GTP binding;4.93082100268478e-06!GO:0000323;lytic vacuole;5.02152779755083e-06!GO:0005764;lysosome;5.02152779755083e-06!GO:0003697;single-stranded DNA binding;5.17378918205062e-06!GO:0019899;enzyme binding;5.41956255325261e-06!GO:0005770;late endosome;5.67972638709947e-06!GO:0008361;regulation of cell size;5.72834040063738e-06!GO:0005762;mitochondrial large ribosomal subunit;5.86464865063805e-06!GO:0000315;organellar large ribosomal subunit;5.86464865063805e-06!GO:0016049;cell growth;6.42355494848988e-06!GO:0016564;transcription repressor activity;6.59391632100378e-06!GO:0050789;regulation of biological process;6.85989462016612e-06!GO:0016779;nucleotidyltransferase activity;6.87052896285722e-06!GO:0043623;cellular protein complex assembly;7.24217362116066e-06!GO:0031982;vesicle;7.89235042736837e-06!GO:0008026;ATP-dependent helicase activity;8.02059653137396e-06!GO:0016853;isomerase activity;9.31027400806009e-06!GO:0048468;cell development;1.08933207710356e-05!GO:0050657;nucleic acid transport;1.09906675253766e-05!GO:0051236;establishment of RNA localization;1.09906675253766e-05!GO:0050658;RNA transport;1.09906675253766e-05!GO:0006403;RNA localization;1.12715288972989e-05!GO:0031410;cytoplasmic vesicle;1.14045462722728e-05!GO:0005798;Golgi-associated vesicle;1.18624993398954e-05!GO:0045454;cell redox homeostasis;1.20335968606136e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.36164326952934e-05!GO:0006752;group transfer coenzyme metabolic process;1.38987671053217e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.42418043938369e-05!GO:0000245;spliceosome assembly;1.43461328735214e-05!GO:0065009;regulation of a molecular function;1.50528506731641e-05!GO:0043566;structure-specific DNA binding;1.57274689422174e-05!GO:0005667;transcription factor complex;1.73416240098538e-05!GO:0004386;helicase activity;1.8596806697703e-05!GO:0006091;generation of precursor metabolites and energy;1.88413482601085e-05!GO:0051325;interphase;1.88934185172733e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.34946911646309e-05!GO:0051329;interphase of mitotic cell cycle;2.57128240894464e-05!GO:0045786;negative regulation of progression through cell cycle;2.5959370107249e-05!GO:0000139;Golgi membrane;2.84515698204582e-05!GO:0031968;organelle outer membrane;2.99926584127766e-05!GO:0009892;negative regulation of metabolic process;3.12868322153489e-05!GO:0032446;protein modification by small protein conjugation;4.30781635134743e-05!GO:0019867;outer membrane;4.4342840639305e-05!GO:0032561;guanyl ribonucleotide binding;4.46002844928403e-05!GO:0019001;guanyl nucleotide binding;4.46002844928403e-05!GO:0016787;hydrolase activity;4.46280130539982e-05!GO:0003899;DNA-directed RNA polymerase activity;4.47144167967844e-05!GO:0030867;rough endoplasmic reticulum membrane;4.82193019559033e-05!GO:0016563;transcription activator activity;4.82193019559033e-05!GO:0016567;protein ubiquitination;5.07601288557163e-05!GO:0008654;phospholipid biosynthetic process;5.74872896403053e-05!GO:0015630;microtubule cytoskeleton;5.80014003159267e-05!GO:0005905;coated pit;6.00615108488359e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.34063042572523e-05!GO:0005741;mitochondrial outer membrane;6.9410697424062e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.47522870549578e-05!GO:0006613;cotranslational protein targeting to membrane;7.99493627703311e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.98484071115075e-05!GO:0051789;response to protein stimulus;9.58036776714662e-05!GO:0006986;response to unfolded protein;9.58036776714662e-05!GO:0016568;chromatin modification;9.80452569596323e-05!GO:0016044;membrane organization and biogenesis;0.000100532248174387!GO:0033116;ER-Golgi intermediate compartment membrane;0.000108914258070143!GO:0043065;positive regulation of apoptosis;0.000115059013146176!GO:0003713;transcription coactivator activity;0.000128464214041326!GO:0000314;organellar small ribosomal subunit;0.000135019827842107!GO:0005763;mitochondrial small ribosomal subunit;0.000135019827842107!GO:0016859;cis-trans isomerase activity;0.000148329618044025!GO:0043068;positive regulation of programmed cell death;0.000149723619990959!GO:0006839;mitochondrial transport;0.000154558536655066!GO:0003724;RNA helicase activity;0.000159301553721489!GO:0000786;nucleosome;0.000169006254614314!GO:0008283;cell proliferation;0.000176233225847888!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000188434585151398!GO:0042802;identical protein binding;0.000188434585151398!GO:0005769;early endosome;0.000199835637293945!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000215571227799854!GO:0044262;cellular carbohydrate metabolic process;0.00022231990518897!GO:0008047;enzyme activator activity;0.00022233742438865!GO:0051028;mRNA transport;0.00023177904195723!GO:0005791;rough endoplasmic reticulum;0.000238573821376272!GO:0009967;positive regulation of signal transduction;0.000240794643027755!GO:0005048;signal sequence binding;0.000244177010851512!GO:0008632;apoptotic program;0.000245261403956024!GO:0000151;ubiquitin ligase complex;0.000258664565994981!GO:0005885;Arp2/3 protein complex;0.000276127727853045!GO:0030133;transport vesicle;0.000288411467093526!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000297515367739828!GO:0043681;protein import into mitochondrion;0.000315791133652696!GO:0005819;spindle;0.000373723602700048!GO:0009165;nucleotide biosynthetic process;0.000395847194853365!GO:0040008;regulation of growth;0.000411588708332772!GO:0005813;centrosome;0.000464279077397873!GO:0033673;negative regulation of kinase activity;0.00047445796324877!GO:0006469;negative regulation of protein kinase activity;0.00047445796324877!GO:0007264;small GTPase mediated signal transduction;0.000479496201996702!GO:0006626;protein targeting to mitochondrion;0.000483523844712704!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000492540892660064!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000531269449688653!GO:0043021;ribonucleoprotein binding;0.000599702235876839!GO:0016481;negative regulation of transcription;0.000601872410738327!GO:0008250;oligosaccharyl transferase complex;0.000668850168183409!GO:0051427;hormone receptor binding;0.000671400351776828!GO:0007006;mitochondrial membrane organization and biogenesis;0.000675540208335549!GO:0051348;negative regulation of transferase activity;0.000686036629993068!GO:0006414;translational elongation;0.000690400366231891!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000803142040915246!GO:0019843;rRNA binding;0.000803142040915246!GO:0003779;actin binding;0.000844243632095723!GO:0046474;glycerophospholipid biosynthetic process;0.000875750147548921!GO:0006612;protein targeting to membrane;0.000929751630977032!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000932928350386543!GO:0051920;peroxiredoxin activity;0.000941223667901547!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000950188534854661!GO:0030176;integral to endoplasmic reticulum membrane;0.00102518694831872!GO:0004576;oligosaccharyl transferase activity;0.00104443682827271!GO:0030880;RNA polymerase complex;0.0010980641653778!GO:0005096;GTPase activator activity;0.00111973169459154!GO:0043284;biopolymer biosynthetic process;0.00113572043726886!GO:0006417;regulation of translation;0.00121930286143387!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00122446637345823!GO:0030658;transport vesicle membrane;0.0012280120608244!GO:0050790;regulation of catalytic activity;0.00125568909918837!GO:0030663;COPI coated vesicle membrane;0.00125568909918837!GO:0030126;COPI vesicle coat;0.00125568909918837!GO:0016126;sterol biosynthetic process;0.00129055801972884!GO:0035257;nuclear hormone receptor binding;0.00131251013734654!GO:0006082;organic acid metabolic process;0.00143416377089267!GO:0048471;perinuclear region of cytoplasm;0.00144396765068864!GO:0030118;clathrin coat;0.00154766643852249!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00156668993744142!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00156668993744142!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00156668993744142!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0015880128102141!GO:0019752;carboxylic acid metabolic process;0.0015880128102141!GO:0008610;lipid biosynthetic process;0.00162605724013016!GO:0005815;microtubule organizing center;0.00162641780125547!GO:0008186;RNA-dependent ATPase activity;0.00163257914376726!GO:0001726;ruffle;0.00172855717315296!GO:0007242;intracellular signaling cascade;0.00178617033693817!GO:0018196;peptidyl-asparagine modification;0.00187984258769989!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00187984258769989!GO:0000059;protein import into nucleus, docking;0.00189067724042282!GO:0043488;regulation of mRNA stability;0.00189440021516322!GO:0043487;regulation of RNA stability;0.00189440021516322!GO:0030132;clathrin coat of coated pit;0.00190494534152271!GO:0006979;response to oxidative stress;0.00201436646153527!GO:0030027;lamellipodium;0.00204564036838453!GO:0051252;regulation of RNA metabolic process;0.00216967306484273!GO:0006917;induction of apoptosis;0.00243331436053829!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00245565068526919!GO:0008033;tRNA processing;0.00259370150338224!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00259912445240476!GO:0000428;DNA-directed RNA polymerase complex;0.00259912445240476!GO:0048487;beta-tubulin binding;0.00259975019156599!GO:0051087;chaperone binding;0.00272296306626834!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00276030782388099!GO:0006261;DNA-dependent DNA replication;0.00282493039426772!GO:0065007;biological regulation;0.00282493039426772!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00300737800370694!GO:0030137;COPI-coated vesicle;0.00302698030290596!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00307595949895765!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00307595949895765!GO:0006520;amino acid metabolic process;0.00311934711505277!GO:0007050;cell cycle arrest;0.00316696094987959!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00321715016672325!GO:0008637;apoptotic mitochondrial changes;0.00324976998414739!GO:0005684;U2-dependent spliceosome;0.00334956490551598!GO:0030660;Golgi-associated vesicle membrane;0.00342496449679609!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00342496449679609!GO:0012502;induction of programmed cell death;0.00347903368737806!GO:0045941;positive regulation of transcription;0.00375790739144416!GO:0031902;late endosome membrane;0.00383528052278449!GO:0005774;vacuolar membrane;0.00387657936358899!GO:0006401;RNA catabolic process;0.00389706323597753!GO:0051168;nuclear export;0.0040670613415628!GO:0004004;ATP-dependent RNA helicase activity;0.00407007306211752!GO:0017166;vinculin binding;0.00408311812354984!GO:0000082;G1/S transition of mitotic cell cycle;0.0041382347170952!GO:0044452;nucleolar part;0.00421082667344846!GO:0018193;peptidyl-amino acid modification;0.00447965979870574!GO:0008139;nuclear localization sequence binding;0.00452697296803258!GO:0006007;glucose catabolic process;0.00454168308430588!GO:0008243;plasminogen activator activity;0.00474183063311007!GO:0007051;spindle organization and biogenesis;0.00477768595655495!GO:0015992;proton transport;0.00481737621452351!GO:0009889;regulation of biosynthetic process;0.00486012737786102!GO:0030134;ER to Golgi transport vesicle;0.00489531615184344!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00500955348029464!GO:0008180;signalosome;0.00507856333666984!GO:0005657;replication fork;0.0051920932088623!GO:0006891;intra-Golgi vesicle-mediated transport;0.00538249069133254!GO:0006818;hydrogen transport;0.0056788473611822!GO:0009966;regulation of signal transduction;0.00568394970261489!GO:0016197;endosome transport;0.00571526201072541!GO:0045792;negative regulation of cell size;0.00581565691135513!GO:0031072;heat shock protein binding;0.0058402460583118!GO:0006695;cholesterol biosynthetic process;0.00586705938874778!GO:0046467;membrane lipid biosynthetic process;0.00589517682545277!GO:0030119;AP-type membrane coat adaptor complex;0.00618510565302004!GO:0030127;COPII vesicle coat;0.00620555237944489!GO:0012507;ER to Golgi transport vesicle membrane;0.00620555237944489!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00626328424613341!GO:0015002;heme-copper terminal oxidase activity;0.00626328424613341!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00626328424613341!GO:0004129;cytochrome-c oxidase activity;0.00626328424613341!GO:0045045;secretory pathway;0.00629529277125191!GO:0043433;negative regulation of transcription factor activity;0.00632567835690379!GO:0030308;negative regulation of cell growth;0.00651322289266496!GO:0031326;regulation of cellular biosynthetic process;0.00656594315307372!GO:0015631;tubulin binding;0.00661915311019903!GO:0006595;polyamine metabolic process;0.00669068128554514!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00736311921117631!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00744829006868019!GO:0051338;regulation of transferase activity;0.0076600333514965!GO:0051128;regulation of cellular component organization and biogenesis;0.00788851048410802!GO:0006402;mRNA catabolic process;0.00808654867250436!GO:0005765;lysosomal membrane;0.00831596323801903!GO:0030125;clathrin vesicle coat;0.00831596323801903!GO:0030665;clathrin coated vesicle membrane;0.00831596323801903!GO:0046489;phosphoinositide biosynthetic process;0.00835779697434644!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00847501125245868!GO:0015399;primary active transmembrane transporter activity;0.00847501125245868!GO:0030041;actin filament polymerization;0.00851612725203353!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00883111463630419!GO:0005869;dynactin complex;0.00887536096895213!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00903838927270874!GO:0006740;NADPH regeneration;0.00940179497215212!GO:0006098;pentose-phosphate shunt;0.00940179497215212!GO:0045936;negative regulation of phosphate metabolic process;0.00946972640181525!GO:0007088;regulation of mitosis;0.00950629666079233!GO:0005862;muscle thin filament tropomyosin;0.00950629666079233!GO:0048500;signal recognition particle;0.00960263405088877!GO:0046483;heterocycle metabolic process;0.00989744688384882!GO:0043086;negative regulation of catalytic activity;0.0100034217834073!GO:0016363;nuclear matrix;0.0101741371612536!GO:0051098;regulation of binding;0.0103137356338911!GO:0000049;tRNA binding;0.010336156369324!GO:0043549;regulation of kinase activity;0.0103545544785102!GO:0004177;aminopeptidase activity;0.0103545544785102!GO:0030131;clathrin adaptor complex;0.010472732767473!GO:0022890;inorganic cation transmembrane transporter activity;0.0105280392987212!GO:0003729;mRNA binding;0.0106185188091386!GO:0006807;nitrogen compound metabolic process;0.0108182910992409!GO:0007265;Ras protein signal transduction;0.0110489607203717!GO:0046426;negative regulation of JAK-STAT cascade;0.0112301224751834!GO:0045893;positive regulation of transcription, DNA-dependent;0.0112301224751834!GO:0044437;vacuolar part;0.0112639640073126!GO:0003746;translation elongation factor activity;0.0113943697434837!GO:0006650;glycerophospholipid metabolic process;0.0113943697434837!GO:0000075;cell cycle checkpoint;0.0116973676431942!GO:0003684;damaged DNA binding;0.0121712394529294!GO:0006383;transcription from RNA polymerase III promoter;0.0127613430266842!GO:0030659;cytoplasmic vesicle membrane;0.0127828169876416!GO:0005832;chaperonin-containing T-complex;0.0127828169876416!GO:0045892;negative regulation of transcription, DNA-dependent;0.0130521682428524!GO:0050662;coenzyme binding;0.0134242580455723!GO:0031543;peptidyl-proline dioxygenase activity;0.0134520617289049!GO:0007034;vacuolar transport;0.0135270497253933!GO:0005100;Rho GTPase activator activity;0.013555941867374!GO:0043022;ribosome binding;0.0136852232584845!GO:0008154;actin polymerization and/or depolymerization;0.0136968092572508!GO:0016272;prefoldin complex;0.013741421167828!GO:0006897;endocytosis;0.0138266888356032!GO:0010324;membrane invagination;0.0138266888356032!GO:0006509;membrane protein ectodomain proteolysis;0.0138820701121685!GO:0033619;membrane protein proteolysis;0.0138820701121685!GO:0051101;regulation of DNA binding;0.0141883447810876!GO:0016860;intramolecular oxidoreductase activity;0.014614694611474!GO:0005637;nuclear inner membrane;0.0150161948277153!GO:0008094;DNA-dependent ATPase activity;0.0150397920869771!GO:0033239;negative regulation of amine metabolic process;0.0150397920869771!GO:0045763;negative regulation of amino acid metabolic process;0.0150397920869771!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0150397920869771!GO:0022415;viral reproductive process;0.01522915877867!GO:0003711;transcription elongation regulator activity;0.01522915877867!GO:0051287;NAD binding;0.0165191560997579!GO:0001516;prostaglandin biosynthetic process;0.0165191560997579!GO:0046457;prostanoid biosynthetic process;0.0165191560997579!GO:0045859;regulation of protein kinase activity;0.0165854254135348!GO:0046822;regulation of nucleocytoplasmic transport;0.0166551915923228!GO:0031418;L-ascorbic acid binding;0.0171178618039833!GO:0000775;chromosome, pericentric region;0.0172224236627807!GO:0007040;lysosome organization and biogenesis;0.0174707334209761!GO:0019206;nucleoside kinase activity;0.0175071750656235!GO:0019318;hexose metabolic process;0.0175480103294776!GO:0006778;porphyrin metabolic process;0.0176324195635193!GO:0033013;tetrapyrrole metabolic process;0.0176324195635193!GO:0031529;ruffle organization and biogenesis;0.0186375100785236!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0198622358535013!GO:0008312;7S RNA binding;0.0200553264244998!GO:0051235;maintenance of localization;0.0203724829204038!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0205534269403758!GO:0007021;tubulin folding;0.0205661456795476!GO:0032940;secretion by cell;0.0205680350515254!GO:0051539;4 iron, 4 sulfur cluster binding;0.0207592612745882!GO:0007033;vacuole organization and biogenesis;0.020770139639368!GO:0006289;nucleotide-excision repair;0.0211117276300828!GO:0008538;proteasome activator activity;0.0212258172667132!GO:0001836;release of cytochrome c from mitochondria;0.0213295839268559!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0213300366988373!GO:0045047;protein targeting to ER;0.0213300366988373!GO:0019798;procollagen-proline dioxygenase activity;0.0220083243798509!GO:0005874;microtubule;0.0221895236766057!GO:0051540;metal cluster binding;0.0221895236766057!GO:0051536;iron-sulfur cluster binding;0.0221895236766057!GO:0042326;negative regulation of phosphorylation;0.0226756905657436!GO:0044433;cytoplasmic vesicle part;0.0227002274507099!GO:0005996;monosaccharide metabolic process;0.0229559942325385!GO:0005856;cytoskeleton;0.0230469927973589!GO:0006984;ER-nuclear signaling pathway;0.0231664478630885!GO:0009308;amine metabolic process;0.0231852511424076!GO:0008286;insulin receptor signaling pathway;0.02356035259237!GO:0046519;sphingoid metabolic process;0.0240338357573593!GO:0030521;androgen receptor signaling pathway;0.0240846426034858!GO:0006497;protein amino acid lipidation;0.024252143199892!GO:0035258;steroid hormone receptor binding;0.0243185842515342!GO:0003678;DNA helicase activity;0.0243185842515342!GO:0008022;protein C-terminus binding;0.0244523571822707!GO:0006118;electron transport;0.0245831651285776!GO:0030695;GTPase regulator activity;0.0247446938462906!GO:0031901;early endosome membrane;0.0249458445276139!GO:0031301;integral to organelle membrane;0.0249458445276139!GO:0006733;oxidoreduction coenzyme metabolic process;0.0252363720375083!GO:0032508;DNA duplex unwinding;0.0252539680585361!GO:0032392;DNA geometric change;0.0252539680585361!GO:0016301;kinase activity;0.0254791701386105!GO:0006519;amino acid and derivative metabolic process;0.0255377651098742!GO:0016584;nucleosome positioning;0.0258674329954768!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.026435157960526!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0266966031600467!GO:0003690;double-stranded DNA binding;0.0268135211205206!GO:0005092;GDP-dissociation inhibitor activity;0.0277253240109696!GO:0009893;positive regulation of metabolic process;0.0280322496053665!GO:0004674;protein serine/threonine kinase activity;0.0282249030771582!GO:0004722;protein serine/threonine phosphatase activity;0.0283537934913581!GO:0035035;histone acetyltransferase binding;0.0288708353470537!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0290335215747039!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0290335215747039!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0290335215747039!GO:0015036;disulfide oxidoreductase activity;0.0291115748761937!GO:0031124;mRNA 3'-end processing;0.0293199754983224!GO:0045926;negative regulation of growth;0.0293454428340117!GO:0030032;lamellipodium biogenesis;0.029893630640705!GO:0003756;protein disulfide isomerase activity;0.0299411827344762!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0299411827344762!GO:0048144;fibroblast proliferation;0.0299411827344762!GO:0048145;regulation of fibroblast proliferation;0.0299411827344762!GO:0006739;NADP metabolic process;0.0309911826621157!GO:0040029;regulation of gene expression, epigenetic;0.0312934983556507!GO:0047485;protein N-terminus binding;0.0313331216298991!GO:0042158;lipoprotein biosynthetic process;0.0313991019611846!GO:0043414;biopolymer methylation;0.0314795042246477!GO:0000030;mannosyltransferase activity;0.0319094838346427!GO:0009112;nucleobase metabolic process;0.0320358644126113!GO:0007041;lysosomal transport;0.03266389891167!GO:0016791;phosphoric monoester hydrolase activity;0.0330219807304244!GO:0006611;protein export from nucleus;0.0332373866492665!GO:0012506;vesicle membrane;0.0333627295206751!GO:0016408;C-acyltransferase activity;0.0336631175149186!GO:0051059;NF-kappaB binding;0.0336631175149186!GO:0009116;nucleoside metabolic process;0.0336825138761382!GO:0009124;nucleoside monophosphate biosynthetic process;0.034146090148172!GO:0009123;nucleoside monophosphate metabolic process;0.034146090148172!GO:0006376;mRNA splice site selection;0.034345130531785!GO:0000389;nuclear mRNA 3'-splice site recognition;0.034345130531785!GO:0006607;NLS-bearing substrate import into nucleus;0.0347280728797244!GO:0051336;regulation of hydrolase activity;0.0348326269671475!GO:0043281;regulation of caspase activity;0.0348412817194329!GO:0000339;RNA cap binding;0.0349678686720279!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0349801399925749!GO:0001666;response to hypoxia;0.0352138665246365!GO:0043189;H4/H2A histone acetyltransferase complex;0.0352138665246365!GO:0000209;protein polyubiquitination;0.0352138665246365!GO:0006643;membrane lipid metabolic process;0.0356101572377262!GO:0042168;heme metabolic process;0.0356450749702428!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0356450749702428!GO:0010257;NADH dehydrogenase complex assembly;0.0356450749702428!GO:0033108;mitochondrial respiratory chain complex assembly;0.0356450749702428!GO:0046365;monosaccharide catabolic process;0.0361267797981371!GO:0043492;ATPase activity, coupled to movement of substances;0.0369141783205526!GO:0007569;cell aging;0.037388992986574!GO:0005099;Ras GTPase activator activity;0.0380281879292801!GO:0006096;glycolysis;0.0386569951325681!GO:0006354;RNA elongation;0.0387746960383406!GO:0005925;focal adhesion;0.0393704826703522!GO:0000178;exosome (RNase complex);0.0393917185331068!GO:0006352;transcription initiation;0.0411991463604676!GO:0030508;thiol-disulfide exchange intermediate activity;0.0412456373382447!GO:0005912;adherens junction;0.0415931520652229!GO:0050178;phenylpyruvate tautomerase activity;0.0421993504022878!GO:0030496;midbody;0.0422174395329754!GO:0031625;ubiquitin protein ligase binding;0.0422179513691517!GO:0006672;ceramide metabolic process;0.0423800859611031!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0425999868134819!GO:0006779;porphyrin biosynthetic process;0.0432586080564272!GO:0033014;tetrapyrrole biosynthetic process;0.0432586080564272!GO:0006268;DNA unwinding during replication;0.0433334802060553!GO:0030911;TPR domain binding;0.0437273521248762!GO:0006633;fatty acid biosynthetic process;0.0437472515190506!GO:0006220;pyrimidine nucleotide metabolic process;0.0442741060087771!GO:0009303;rRNA transcription;0.0443265037208555!GO:0048146;positive regulation of fibroblast proliferation;0.0443575919330182!GO:0030384;phosphoinositide metabolic process;0.044768851090848!GO:0008287;protein serine/threonine phosphatase complex;0.044768851090848!GO:0051090;regulation of transcription factor activity;0.0448505307455977!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0448505307455977!GO:0033043;regulation of organelle organization and biogenesis;0.0448505307455977!GO:0030433;ER-associated protein catabolic process;0.0448505307455977!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0448505307455977!GO:0004527;exonuclease activity;0.0451323114921883!GO:0008601;protein phosphatase type 2A regulator activity;0.0452128895488216!GO:0009166;nucleotide catabolic process;0.0452788188825676!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0455596330475159!GO:0005784;translocon complex;0.0460604398531618!GO:0043130;ubiquitin binding;0.0461142658064402!GO:0032182;small conjugating protein binding;0.0461142658064402!GO:0016311;dephosphorylation;0.046190208791268!GO:0006405;RNA export from nucleus;0.0463207575550233!GO:0005083;small GTPase regulator activity;0.0469072763337096!GO:0033559;unsaturated fatty acid metabolic process;0.0470004296972994!GO:0006636;unsaturated fatty acid biosynthetic process;0.0470004296972994!GO:0006458;'de novo' protein folding;0.0470004296972994!GO:0051084;'de novo' posttranslational protein folding;0.0470004296972994!GO:0050811;GABA receptor binding;0.047096681892831!GO:0031371;ubiquitin conjugating enzyme complex;0.0476148731657862!GO:0000123;histone acetyltransferase complex;0.0476665985433057!GO:0035267;NuA4 histone acetyltransferase complex;0.0481860420491084!GO:0043154;negative regulation of caspase activity;0.0484540043393268!GO:0007162;negative regulation of cell adhesion;0.0488111410305363!GO:0045334;clathrin-coated endocytic vesicle;0.0488111410305363!GO:0001725;stress fiber;0.0499654453262245!GO:0032432;actin filament bundle;0.0499654453262245!GO:0004448;isocitrate dehydrogenase activity;0.0499654453262245!GO:0030100;regulation of endocytosis;0.049966125972451 | |||
|sample_id=11367 | |sample_id=11367 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical artery | |sample_tissue=umbilical artery | ||
|top_motifs=SRF:1.80424435541;TBP:1.70134899972;GLI1..3:1.37924144992;ALX4:1.26735356358;NFE2L1:1.2594060789;GTF2A1,2:1.24509752442;GCM1,2:1.20243700689;EBF1:1.02088660905;TFAP4:0.995305656332;EN1,2:0.963529625051;TFCP2:0.925371963712;HES1:0.867717253069;NR3C1:0.861259990363;PAX1,9:0.820251763863;IKZF1:0.736985495452;ZBTB6:0.736798390498;ESR1:0.713352366311;TLX1..3_NFIC{dimer}:0.712265779772;ZNF148:0.697308925236;TFAP2{A,C}:0.678233070587;TEAD1:0.654467284013;XCPE1{core}:0.6540921016;UFEwm:0.644924255781;HIF1A:0.639541748142;NR5A1,2:0.588395928063;RXRA_VDR{dimer}:0.559651652367;ZNF238:0.539162776733;PPARG:0.516985729736;HSF1,2:0.505727541937;HMX1:0.500887779116;POU1F1:0.500114897276;GZF1:0.468626250802;BACH2:0.463630120468;POU6F1:0.441612674746;POU2F1..3:0.429937397323;HAND1,2:0.424528268099;ATF6:0.423183561303;FOXL1:0.416933540771;ZIC1..3:0.398937574289;NFE2L2:0.392211108524;SOX{8,9,10}:0.389564600166;KLF4:0.383795400302;ONECUT1,2:0.372226884898;TP53:0.370882765665;NANOG{mouse}:0.360529647698;FOSL2:0.353756301353;JUN:0.35208834113;SMAD1..7,9:0.351357856719;FOS_FOS{B,L1}_JUN{B,D}:0.33591754903;ZNF423:0.33580513876;XBP1:0.317825565793;RUNX1..3:0.315537367904;PAX8:0.308302141466;MAFB:0.304955593144;MTE{core}:0.300865396562;RXR{A,B,G}:0.299761580456;PAX5:0.296895541078;HOX{A5,B5}:0.282682856237;TBX4,5:0.281647911083;POU5F1:0.279809832024;TLX2:0.258792157061;SOX17:0.247628199035;GFI1B:0.243914195048;ETS1,2:0.242593581809;AR:0.238138970663;NFKB1_REL_RELA:0.238107588565;STAT2,4,6:0.230876730634;NFE2:0.230831479851;PBX1:0.229331245264;ELF1,2,4:0.197088736938;HIC1:0.19407853793;NR6A1:0.167239563873;POU3F1..4:0.160674418642;MYBL2:0.160375006885;STAT5{A,B}:0.135253341874;NFATC1..3:0.120209555762;PATZ1:0.116530033007;SP1:0.109159871235;FOX{I1,J2}:0.109002488707;REST:0.108524687751;TFDP1:0.104419824254;GTF2I:0.0970106769945;TFAP2B:0.0884036883932;MYB:0.0859619056135;SPZ1:0.0792571464175;GFI1:0.0725376764176;HLF:0.0687555569985;SPIB:0.0649160535711;YY1:0.0630000346107;MTF1:0.0593039019014;MAZ:0.0535270543658;E2F1..5:0.0304792547279;SOX2:0.0264896481977;DMAP1_NCOR{1,2}_SMARC:0.0192287237148;LEF1_TCF7_TCF7L1,2:-0.00362373592761;NFY{A,B,C}:-0.00840348625094;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0210569578649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0232211688397;NKX2-2,8:-0.0234726325175;LHX3,4:-0.0261269175906;ELK1,4_GABP{A,B1}:-0.051901766156;CDC5L:-0.0524904353966;SPI1:-0.0547146617493;EP300:-0.0606551086015;ZNF384:-0.0621154987179;HNF1A:-0.0659167708998;TOPORS:-0.0698987590403;MEF2{A,B,C,D}:-0.0829945673628;PAX2:-0.112908246715;bHLH_family:-0.127285246889;GATA4:-0.137655997301;NKX3-2:-0.143891216602;HNF4A_NR2F1,2:-0.14640957466;PITX1..3:-0.151867582969;MYOD1:-0.156916043222;RREB1:-0.187891350134;HMGA1,2:-0.193886764323;VSX1,2:-0.19698593631;ZNF143:-0.198599392383;EGR1..3:-0.203366271262;MZF1:-0.22524989168;ADNP_IRX_SIX_ZHX:-0.226936163889;LMO2:-0.227842263597;PRDM1:-0.233059944379;NHLH1,2:-0.238689553047;TAL1_TCF{3,4,12}:-0.250456285649;MYFfamily:-0.272878022842;GATA6:-0.277288587923;ATF5_CREB3:-0.303175351624;NFIL3:-0.30855326668;CEBPA,B_DDIT3:-0.315685817506;IRF1,2:-0.369340860098;CRX:-0.373963866574;NRF1:-0.39785331052;RFX1:-0.40566688412;HBP1_HMGB_SSRP1_UBTF:-0.409180552853;ATF2:-0.412194313855;EVI1:-0.430047436115;FOXM1:-0.433657840733;ESRRA:-0.438356039883;ZFP161:-0.444517043426;SNAI1..3:-0.485099554423;MED-1{core}:-0.500690311345;CREB1:-0.509058263389;OCT4_SOX2{dimer}:-0.517589996076;NANOG:-0.52894715692;NKX3-1:-0.535342857198;AHR_ARNT_ARNT2:-0.54995446111;NKX2-3_NKX2-5:-0.566872042696;PAX3,7:-0.584551566364;T:-0.588765963853;IKZF2:-0.591502107037;IRF7:-0.594966407938;ZEB1:-0.596801876979;NKX2-1,4:-0.598550880312;PAX4:-0.609795331137;ALX1:-0.625754687729;FOX{F1,F2,J1}:-0.638780426536;RFX2..5_RFXANK_RFXAP:-0.671469172735;NFIX:-0.716363047499;BREu{core}:-0.723591760077;ARID5B:-0.757328541428;HOX{A6,A7,B6,B7}:-0.783788913494;FOX{D1,D2}:-0.793816425227;PRRX1,2:-0.80733930142;NR1H4:-0.819116142783;TGIF1:-0.82986595119;FOXP3:-0.832946121907;HOX{A4,D4}:-0.853419418833;CDX1,2,4:-0.888274499397;ATF4:-0.897738549795;DBP:-0.898365478079;TEF:-0.91862388854;SOX5:-0.93937590571;FOXP1:-0.990425404153;CUX2:-0.99886226324;SREBF1,2:-1.00058995592;FOXO1,3,4:-1.00803412005;PAX6:-1.03580966845;FOXA2:-1.03748760105;HOXA9_MEIS1:-1.05084385572;AIRE:-1.0735446519;STAT1,3:-1.11414934235;ZBTB16:-1.12492446361;RORA:-1.13560239867;FOXD3:-1.2074212344;FOXQ1:-1.22006905967;FOXN1:-1.28360555922;BPTF:-1.39250915254;PDX1:-1.40301606045;NKX6-1,2:-1.53873545344;RBPJ:-1.63533918119 | |top_motifs=SRF:1.80424435541;TBP:1.70134899972;GLI1..3:1.37924144992;ALX4:1.26735356358;NFE2L1:1.2594060789;GTF2A1,2:1.24509752442;GCM1,2:1.20243700689;EBF1:1.02088660905;TFAP4:0.995305656332;EN1,2:0.963529625051;TFCP2:0.925371963712;HES1:0.867717253069;NR3C1:0.861259990363;PAX1,9:0.820251763863;IKZF1:0.736985495452;ZBTB6:0.736798390498;ESR1:0.713352366311;TLX1..3_NFIC{dimer}:0.712265779772;ZNF148:0.697308925236;TFAP2{A,C}:0.678233070587;TEAD1:0.654467284013;XCPE1{core}:0.6540921016;UFEwm:0.644924255781;HIF1A:0.639541748142;NR5A1,2:0.588395928063;RXRA_VDR{dimer}:0.559651652367;ZNF238:0.539162776733;PPARG:0.516985729736;HSF1,2:0.505727541937;HMX1:0.500887779116;POU1F1:0.500114897276;GZF1:0.468626250802;BACH2:0.463630120468;POU6F1:0.441612674746;POU2F1..3:0.429937397323;HAND1,2:0.424528268099;ATF6:0.423183561303;FOXL1:0.416933540771;ZIC1..3:0.398937574289;NFE2L2:0.392211108524;SOX{8,9,10}:0.389564600166;KLF4:0.383795400302;ONECUT1,2:0.372226884898;TP53:0.370882765665;NANOG{mouse}:0.360529647698;FOSL2:0.353756301353;JUN:0.35208834113;SMAD1..7,9:0.351357856719;FOS_FOS{B,L1}_JUN{B,D}:0.33591754903;ZNF423:0.33580513876;XBP1:0.317825565793;RUNX1..3:0.315537367904;PAX8:0.308302141466;MAFB:0.304955593144;MTE{core}:0.300865396562;RXR{A,B,G}:0.299761580456;PAX5:0.296895541078;HOX{A5,B5}:0.282682856237;TBX4,5:0.281647911083;POU5F1:0.279809832024;TLX2:0.258792157061;SOX17:0.247628199035;GFI1B:0.243914195048;ETS1,2:0.242593581809;AR:0.238138970663;NFKB1_REL_RELA:0.238107588565;STAT2,4,6:0.230876730634;NFE2:0.230831479851;PBX1:0.229331245264;ELF1,2,4:0.197088736938;HIC1:0.19407853793;NR6A1:0.167239563873;POU3F1..4:0.160674418642;MYBL2:0.160375006885;STAT5{A,B}:0.135253341874;NFATC1..3:0.120209555762;PATZ1:0.116530033007;SP1:0.109159871235;FOX{I1,J2}:0.109002488707;REST:0.108524687751;TFDP1:0.104419824254;GTF2I:0.0970106769945;TFAP2B:0.0884036883932;MYB:0.0859619056135;SPZ1:0.0792571464175;GFI1:0.0725376764176;HLF:0.0687555569985;SPIB:0.0649160535711;YY1:0.0630000346107;MTF1:0.0593039019014;MAZ:0.0535270543658;E2F1..5:0.0304792547279;SOX2:0.0264896481977;DMAP1_NCOR{1,2}_SMARC:0.0192287237148;LEF1_TCF7_TCF7L1,2:-0.00362373592761;NFY{A,B,C}:-0.00840348625094;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0210569578649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0232211688397;NKX2-2,8:-0.0234726325175;LHX3,4:-0.0261269175906;ELK1,4_GABP{A,B1}:-0.051901766156;CDC5L:-0.0524904353966;SPI1:-0.0547146617493;EP300:-0.0606551086015;ZNF384:-0.0621154987179;HNF1A:-0.0659167708998;TOPORS:-0.0698987590403;MEF2{A,B,C,D}:-0.0829945673628;PAX2:-0.112908246715;bHLH_family:-0.127285246889;GATA4:-0.137655997301;NKX3-2:-0.143891216602;HNF4A_NR2F1,2:-0.14640957466;PITX1..3:-0.151867582969;MYOD1:-0.156916043222;RREB1:-0.187891350134;HMGA1,2:-0.193886764323;VSX1,2:-0.19698593631;ZNF143:-0.198599392383;EGR1..3:-0.203366271262;MZF1:-0.22524989168;ADNP_IRX_SIX_ZHX:-0.226936163889;LMO2:-0.227842263597;PRDM1:-0.233059944379;NHLH1,2:-0.238689553047;TAL1_TCF{3,4,12}:-0.250456285649;MYFfamily:-0.272878022842;GATA6:-0.277288587923;ATF5_CREB3:-0.303175351624;NFIL3:-0.30855326668;CEBPA,B_DDIT3:-0.315685817506;IRF1,2:-0.369340860098;CRX:-0.373963866574;NRF1:-0.39785331052;RFX1:-0.40566688412;HBP1_HMGB_SSRP1_UBTF:-0.409180552853;ATF2:-0.412194313855;EVI1:-0.430047436115;FOXM1:-0.433657840733;ESRRA:-0.438356039883;ZFP161:-0.444517043426;SNAI1..3:-0.485099554423;MED-1{core}:-0.500690311345;CREB1:-0.509058263389;OCT4_SOX2{dimer}:-0.517589996076;NANOG:-0.52894715692;NKX3-1:-0.535342857198;AHR_ARNT_ARNT2:-0.54995446111;NKX2-3_NKX2-5:-0.566872042696;PAX3,7:-0.584551566364;T:-0.588765963853;IKZF2:-0.591502107037;IRF7:-0.594966407938;ZEB1:-0.596801876979;NKX2-1,4:-0.598550880312;PAX4:-0.609795331137;ALX1:-0.625754687729;FOX{F1,F2,J1}:-0.638780426536;RFX2..5_RFXANK_RFXAP:-0.671469172735;NFIX:-0.716363047499;BREu{core}:-0.723591760077;ARID5B:-0.757328541428;HOX{A6,A7,B6,B7}:-0.783788913494;FOX{D1,D2}:-0.793816425227;PRRX1,2:-0.80733930142;NR1H4:-0.819116142783;TGIF1:-0.82986595119;FOXP3:-0.832946121907;HOX{A4,D4}:-0.853419418833;CDX1,2,4:-0.888274499397;ATF4:-0.897738549795;DBP:-0.898365478079;TEF:-0.91862388854;SOX5:-0.93937590571;FOXP1:-0.990425404153;CUX2:-0.99886226324;SREBF1,2:-1.00058995592;FOXO1,3,4:-1.00803412005;PAX6:-1.03580966845;FOXA2:-1.03748760105;HOXA9_MEIS1:-1.05084385572;AIRE:-1.0735446519;STAT1,3:-1.11414934235;ZBTB16:-1.12492446361;RORA:-1.13560239867;FOXD3:-1.2074212344;FOXQ1:-1.22006905967;FOXN1:-1.28360555922;BPTF:-1.39250915254;PDX1:-1.40301606045;NKX6-1,2:-1.53873545344;RBPJ:-1.63533918119 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11367-117I8;search_select_hide=table117:FF:11367-117I8 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Smooth Muscle Cells - Umbilical Artery, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11991 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11991
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11991
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.96 |
| 10 | 10 | 0.738 |
| 100 | 100 | 0.947 |
| 101 | 101 | 0.222 |
| 102 | 102 | 0.954 |
| 103 | 103 | 0.539 |
| 104 | 104 | 0.591 |
| 105 | 105 | 0.438 |
| 106 | 106 | 0.0532 |
| 107 | 107 | 0.0199 |
| 108 | 108 | 0.33 |
| 109 | 109 | 0.0568 |
| 11 | 11 | 0.112 |
| 110 | 110 | 0.172 |
| 111 | 111 | 0.85 |
| 112 | 112 | 0.343 |
| 113 | 113 | 0.171 |
| 114 | 114 | 0.681 |
| 115 | 115 | 0.164 |
| 116 | 116 | 0.00392 |
| 117 | 117 | 0.679 |
| 118 | 118 | 0.92 |
| 119 | 119 | 0.18 |
| 12 | 12 | 0.238 |
| 120 | 120 | 0.242 |
| 121 | 121 | 0.62 |
| 122 | 122 | 0.912 |
| 123 | 123 | 0.0189 |
| 124 | 124 | 0.247 |
| 125 | 125 | 0.413 |
| 126 | 126 | 0.721 |
| 127 | 127 | 0.191 |
| 128 | 128 | 0.124 |
| 129 | 129 | 0.676 |
| 13 | 13 | 0.508 |
| 130 | 130 | 0.643 |
| 131 | 131 | 0.278 |
| 132 | 132 | 0.981 |
| 133 | 133 | 0.71 |
| 134 | 134 | 0.272 |
| 135 | 135 | 0.0248 |
| 136 | 136 | 0.192 |
| 137 | 137 | 0.612 |
| 138 | 138 | 0.408 |
| 139 | 139 | 0.564 |
| 14 | 14 | 0.377 |
| 140 | 140 | 0.939 |
| 141 | 141 | 0.46 |
| 142 | 142 | 0.082 |
| 143 | 143 | 0.00123 |
| 144 | 144 | 0.592 |
| 145 | 145 | 0.276 |
| 146 | 146 | 0.249 |
| 147 | 147 | 0.52 |
| 148 | 148 | 0.613 |
| 149 | 149 | 0.0993 |
| 15 | 15 | 0.714 |
| 150 | 150 | 0.162 |
| 151 | 151 | 0.776 |
| 152 | 152 | 0.0316 |
| 153 | 153 | 0.517 |
| 154 | 154 | 0.533 |
| 155 | 155 | 0.219 |
| 156 | 156 | 0.668 |
| 157 | 157 | 0.119 |
| 158 | 158 | 0.0137 |
| 159 | 159 | 0.247 |
| 16 | 16 | 0.0865 |
| 160 | 160 | 0.122 |
| 161 | 161 | 0.177 |
| 162 | 162 | 0.674 |
| 163 | 163 | 0.74 |
| 164 | 164 | 0.304 |
| 165 | 165 | 0.966 |
| 166 | 166 | 0.521 |
| 167 | 167 | 0.199 |
| 168 | 168 | 0.716 |
| 169 | 169 | 0.0774 |
| 17 | 17 | 0.173 |
| 18 | 18 | 0.225 |
| 19 | 19 | 0.0383 |
| 2 | 2 | 0.184 |
| 20 | 20 | 0.328 |
| 21 | 21 | 0.65 |
| 22 | 22 | 0.345 |
| 23 | 23 | 0.258 |
| 24 | 24 | 0.704 |
| 25 | 25 | 0.647 |
| 26 | 26 | 0.294 |
| 27 | 27 | 0.533 |
| 28 | 28 | 0.29 |
| 29 | 29 | 0.403 |
| 3 | 3 | 0.475 |
| 30 | 30 | 0.429 |
| 31 | 31 | 0.466 |
| 32 | 32 | 4.96496e-6 |
| 33 | 33 | 0.454 |
| 34 | 34 | 0.151 |
| 35 | 35 | 0.941 |
| 36 | 36 | 0.663 |
| 37 | 37 | 0.0852 |
| 38 | 38 | 0.999 |
| 39 | 39 | 0.365 |
| 4 | 4 | 0.577 |
| 40 | 40 | 0.0658 |
| 41 | 41 | 0.793 |
| 42 | 42 | 0.76 |
| 43 | 43 | 0.343 |
| 44 | 44 | 0.0839 |
| 45 | 45 | 0.476 |
| 46 | 46 | 0.393 |
| 47 | 47 | 0.646 |
| 48 | 48 | 0.335 |
| 49 | 49 | 0.794 |
| 5 | 5 | 0.576 |
| 50 | 50 | 0.68 |
| 51 | 51 | 0.773 |
| 52 | 52 | 0.414 |
| 53 | 53 | 0.242 |
| 54 | 54 | 0.52 |
| 55 | 55 | 0.759 |
| 56 | 56 | 0.572 |
| 57 | 57 | 0.705 |
| 58 | 58 | 0.658 |
| 59 | 59 | 0.0439 |
| 6 | 6 | 0.677 |
| 60 | 60 | 0.477 |
| 61 | 61 | 0.882 |
| 62 | 62 | 0.73 |
| 63 | 63 | 0.301 |
| 64 | 64 | 0.306 |
| 65 | 65 | 0.233 |
| 66 | 66 | 0.847 |
| 67 | 67 | 0.867 |
| 68 | 68 | 0.329 |
| 69 | 69 | 0.69 |
| 7 | 7 | 0.819 |
| 70 | 70 | 0.787 |
| 71 | 71 | 0.422 |
| 72 | 72 | 0.69 |
| 73 | 73 | 0.00617 |
| 74 | 74 | 0.597 |
| 75 | 75 | 0.374 |
| 76 | 76 | 0.154 |
| 77 | 77 | 0.00132 |
| 78 | 78 | 0.689 |
| 79 | 79 | 0.00129 |
| 8 | 8 | 0.0392 |
| 80 | 80 | 0.337 |
| 81 | 81 | 0.565 |
| 82 | 82 | 0.698 |
| 83 | 83 | 0.621 |
| 84 | 84 | 0.717 |
| 85 | 85 | 0.215 |
| 86 | 86 | 0.753 |
| 87 | 87 | 0.00795 |
| 88 | 88 | 0.122 |
| 89 | 89 | 0.207 |
| 9 | 9 | 0.0881 |
| 90 | 90 | 0.101 |
| 91 | 91 | 0.224 |
| 92 | 92 | 0.957 |
| 93 | 93 | 0.696 |
| 94 | 94 | 0.862 |
| 95 | 95 | 0.147 |
| 96 | 96 | 0.863 |
| 97 | 97 | 0.87 |
| 98 | 98 | 0.789 |
| 99 | 99 | 0.00136 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11991
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000176 human smooth muscle cell of umbilical artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
