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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008024
|DRA_sample_Accession=CAGE@SAMD00004934
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004934
|accession_numbers=CAGE;DRX008131;DRR009003;DRZ000428;DRZ001813;DRZ011778;DRZ013163
|accession_numbers_RNASeq=sRNA-Seq;DRX037143;DRR041509;DRZ007151
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000763,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0000766,CL:0002078,CL:0000219,CL:0000215,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000034,CL:0000576,CL:0000115,CL:0000566,CL:0002619
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000763,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0000766,CL:0002078,CL:0000219,CL:0000215,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000034,CL:0000576,CL:0000115,CL:0000566,CL:0002619
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.56!360.86!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.40!252.94!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.31!204.77!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.17!147.85!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.04!1208.03!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!2.00!99.17!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!1.90!77.79!SPI1;;chr16:79634624..79634642,-!p1@MAF!1.86!265.30!MAF;;chr10:51572408..51572454,+!p3@NCOA4!1.74!301.36!NCOA4;;chr10:31288398..31288455,-!p2@ZNF438!1.72!59.76!ZNF438;;chr2:145277882..145277967,-!p3@ZEB2!1.67!77.27!ZEB2;;chr4:26165074..26165110,+!p9@RBPJ!1.67!45.59!RBPJ;;chr16:79634595..79634620,-!p2@MAF!1.62!72.64!MAF;;chr7:137620650..137620677,-!p3@CREB3L2!1.54!34.00!CREB3L2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.54!33.48!TFCP2L1;;chr2:145277640..145277771,-!p1@ZEB2!1.53!418.05!ZEB2;;chr7:128577972..128578047,+!p1@IRF5!1.51!48.68!IRF5;;chr14:75988771..75988826,+!p1@BATF!1.50!40.70!BATF;;chr7:137620684..137620711,-!p4@CREB3L2!1.50!30.39!CREB3L2;;chrY:21906594..21906622,-!p1@KDM5D!1.47!28.59!KDM5D;;chr2:113999360..113999386,-!p4@PAX8!1.45!27.30!PAX8;;chr12:26277956..26277980,-!p1@BHLHE41!1.44!92.47!BHLHE41;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.24!IKZF1;;chr11:47279504..47279563,+!p1@NR1H3!1.41!55.38!NR1H3;;chr16:79633894..79633954,-!p3@MAF!1.37!43.02!MAF;;chr19:33793430..33793447,-!p1@CEBPA!1.36!91.18!CEBPA;;chr16:67198683..67198698,+!p2@HSF4!1.30!18.80!HSF4;;chr1:78050720..78050734,-!p9@ZZZ3!1.26!17.00!ZZZ3;;chr3:69788576..69788648,+!p1@MITF!1.24!85.26!MITF;;chr10:51572339..51572376,+!p4@NCOA4!1.24!36.32!NCOA4;;chr6:144385698..144385742,-!p2@PLAGL1!1.18!17.00!PLAGL1;;chr11:47400032..47400043,-!p5@SPI1!1.18!14.17!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.17!13.91!IKZF1;;chr10:31288370..31288393,-!p3@ZNF438!1.17!13.65!ZNF438;;chr11:47399996..47400014,-!p4@SPI1!1.17!13.65!SPI1;;chr12:12764995..12765017,+!p3@CREBL2!1.13!17.77!CREBL2;;chr16:79634581..79634592,-!p4@MAF!1.13!12.62!MAF;;chr3:114343039..114343085,-!p8@ZBTB20!1.13!12.62!ZBTB20;;chr1:167298300..167298319,+!p2@POU2F1!1.13!12.36!POU2F1;;chr5:88178983..88179012,-!p1@MEF2C!1.12!94.79!MEF2C;;chr12:26277929..26277955,-!p3@BHLHE41!1.12!17.26!BHLHE41;;chr11:128563948..128564003,+!p1@FLI1!1.10!140.89!FLI1;;chr11:47400045..47400060,-!p6@SPI1!1.09!11.33!SPI1;;chr7:115670792..115670797,-!p2@TFEC!1.09!11.33!TFEC;;chr13:41593425..41593480,-!p1@ELF1!1.07!69.55!ELF1;;chr2:145275982..145276003,-!p7@ZEB2!1.06!10.56!ZEB2;;chr19:13213954..13214021,-!p4@LYL1!1.05!10.30!LYL1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.04!93.50!ZCCHC6;;chr3:71179699..71179744,-!p2@FOXP1!1.04!75.98!FOXP1;;chr19:13213662..13213686,-!p1@LYL1!1.04!14.94!LYL1;;chr17:40440481..40440550,+!p1@STAT5A!1.03!70.83!STAT5A;;chr2:113999397..113999413,-!p17@PAX8!1.03!9.79!PAX8;;chr12:26277817..26277863,-!p2@BHLHE41!1.01!12.62!BHLHE41;;chr8:116681194..116681214,-!p1@TRPS1!1.00!86.55!TRPS1;;chr2:70142232..70142251,+!p1@MXD1!0.98!49.71!MXD1;;chr16:67198633..67198671,+!p1@HSF4!0.98!8.50!HSF4;;chr20:50159198..50159299,-!p1@NFATC2!0.97!12.36!NFATC2;;chr2:145275947..145275981,-!p10@ZEB2!0.93!7.47!ZEB2;;chr4:185395633..185395651,-!p2@IRF2!0.91!11.59!IRF2;;chr2:68592394..68592405,+!p2@PLEK!0.91!7.21!PLEK;;chr3:48282587..48282603,+!p1@ZNF589!0.90!32.20!ZNF589;;chr7:50344251..50344288,+!p3@IKZF1!0.90!6.95!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!0.88!185.71!TSC22D3;;chr1:25256756..25256774,-!p1@RUNX3!0.88!12.88!RUNX3;;chr4:106068026..106068084,+!p1@TET2!0.87!61.82!TET2;;chr2:231090433..231090469,+!p1@SP140!0.87!6.44!SP140;;chr1:158979686..158979745,+!p1@IFI16!0.86!216.11!IFI16;;chr19:35759824..35759891,+!p1@USF2!0.86!204.52!USF2;;chr12:12764947..12764986,+!p2@CREBL2!0.86!12.62!CREBL2;;chr1:221053049..221053075,+!p3@HLX!0.86!11.33!HLX;;chr2:192015750..192015793,-!p2@STAT4!0.86!8.50!STAT4;;chr21:30672433..30672464,+!p6@BACH1!0.86!6.18!BACH1;;chr16:79633682..79633694,-!p12@MAF!0.86!6.18!MAF;;chr8:48650715..48650735,-!p1@CEBPD!0.85!817.29!CEBPD;;chr5:88179017..88179046,-!p2@MEF2C!0.85!25.76!MEF2C;;chr18:52989031..52989079,-!p2@TCF4!0.85!14.94!TCF4;;chr16:88752889..88752921,-!p1@SNAI3!0.85!7.21!SNAI3;;chr4:87857433..87857472,+!p9@AFF1!0.84!11.08!AFF1;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.92!ZFY;;chr11:47399947..47399961,-!p3@SPI1!0.84!5.92!SPI1;;chr7:149470641..149470694,-!p1@ZNF467!0.83!27.82!ZNF467;;chrX:131623044..131623089,-!p1@MBNL3!0.83!25.76!MBNL3;;chr20:3388238..3388323,-!p1@C20orf194!0.82!42.50!C20orf194;;chr3:114866084..114866118,-!p2@ZBTB20!0.82!21.89!ZBTB20;;chr11:113930291..113930339,+!p2@ZBTB16!0.82!9.53!ZBTB16;;chr9:88969287..88969297,-!p3@ZCCHC6!0.82!7.73!ZCCHC6;;chr19:13213704..13213726,-!p3@LYL1!0.81!7.47!LYL1;;chrX:107019163..107019179,-!p7@TSC22D3!0.81!6.44!TSC22D3;;chrX:107018836..107018862,-!p8@TSC22D3!0.81!5.41!TSC22D3;;chr20:3321190..3321215,-!p7@C20orf194!0.81!5.41!C20orf194;;chr2:145277792..145277808,-!p15@ZEB2!0.81!5.41!ZEB2;;chr2:145277833..145277845,-!p16@ZEB2!0.81!5.41!ZEB2;;chr2:48541789.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|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.56!360.86!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.40!252.94!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.31!204.77!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.17!147.85!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.04!1208.03!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!2.00!99.17!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!1.90!77.79!SPI1;;chr16:79634624..79634642,-!p1@MAF!1.86!265.30!MAF;;chr10:51572408..51572454,+!p3@NCOA4!1.74!301.36!NCOA4;;chr10:31288398..31288455,-!p2@ZNF438!1.72!59.76!ZNF438;;chr2:145277882..145277967,-!p3@ZEB2!1.67!77.27!ZEB2;;chr4:26165074..26165110,+!p9@RBPJ!1.67!45.59!RBPJ;;chr16:79634595..79634620,-!p2@MAF!1.62!72.64!MAF;;chr7:137620650..137620677,-!p3@CREB3L2!1.54!34.00!CREB3L2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.54!33.48!TFCP2L1;;chr2:145277640..145277771,-!p1@ZEB2!1.53!418.05!ZEB2;;chr7:128577972..128578047,+!p1@IRF5!1.51!48.68!IRF5;;chr14:75988771..75988826,+!p1@BATF!1.50!40.70!BATF;;chr7:137620684..137620711,-!p4@CREB3L2!1.50!30.39!CREB3L2;;chrY:21906594..21906622,-!p1@KDM5D!1.47!28.59!KDM5D;;chr2:113999360..113999386,-!p4@PAX8!1.45!27.30!PAX8;;chr12:26277956..26277980,-!p1@BHLHE41!1.44!92.47!BHLHE41;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.24!IKZF1;;chr11:47279504..47279563,+!p1@NR1H3!1.41!55.38!NR1H3;;chr16:79633894..79633954,-!p3@MAF!1.37!43.02!MAF;;chr19:33793430..33793447,-!p1@CEBPA!1.36!91.18!CEBPA;;chr16:67198683..67198698,+!p2@HSF4!1.30!18.80!HSF4;;chr1:78050720..78050734,-!p9@ZZZ3!1.26!17.00!ZZZ3;;chr3:69788576..69788648,+!p1@MITF!1.24!85.26!MITF;;chr10:51572339..51572376,+!p4@NCOA4!1.24!36.32!NCOA4;;chr6:144385698..144385742,-!p2@PLAGL1!1.18!17.00!PLAGL1;;chr11:47400032..47400043,-!p5@SPI1!1.18!14.17!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.17!13.91!IKZF1;;chr10:31288370..31288393,-!p3@ZNF438!1.17!13.65!ZNF438;;chr11:47399996..47400014,-!p4@SPI1!1.17!13.65!SPI1;;chr12:12764995..12765017,+!p3@CREBL2!1.13!17.77!CREBL2;;chr16:79634581..79634592,-!p4@MAF!1.13!12.62!MAF;;chr3:114343039..114343085,-!p8@ZBTB20!1.13!12.62!ZBTB20;;chr1:167298300..167298319,+!p2@POU2F1!1.13!12.36!POU2F1;;chr5:88178983..88179012,-!p1@MEF2C!1.12!94.79!MEF2C;;chr12:26277929..26277955,-!p3@BHLHE41!1.12!17.26!BHLHE41;;chr11:128563948..128564003,+!p1@FLI1!1.10!140.89!FLI1;;chr11:47400045..47400060,-!p6@SPI1!1.09!11.33!SPI1;;chr7:115670792..115670797,-!p2@TFEC!1.09!11.33!TFEC;;chr13:41593425..41593480,-!p1@ELF1!1.07!69.55!ELF1;;chr2:145275982..145276003,-!p7@ZEB2!1.06!10.56!ZEB2;;chr19:13213954..13214021,-!p4@LYL1!1.05!10.30!LYL1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.04!93.50!ZCCHC6;;chr3:71179699..71179744,-!p2@FOXP1!1.04!75.98!FOXP1;;chr19:13213662..13213686,-!p1@LYL1!1.04!14.94!LYL1;;chr17:40440481..40440550,+!p1@STAT5A!1.03!70.83!STAT5A;;chr2:113999397..113999413,-!p17@PAX8!1.03!9.79!PAX8;;chr12:26277817..26277863,-!p2@BHLHE41!1.01!12.62!BHLHE41;;chr8:116681194..116681214,-!p1@TRPS1!1.00!86.55!TRPS1;;chr2:70142232..70142251,+!p1@MXD1!0.98!49.71!MXD1;;chr16:67198633..67198671,+!p1@HSF4!0.98!8.50!HSF4;;chr20:50159198..50159299,-!p1@NFATC2!0.97!12.36!NFATC2;;chr2:145275947..145275981,-!p10@ZEB2!0.93!7.47!ZEB2;;chr4:185395633..185395651,-!p2@IRF2!0.91!11.59!IRF2;;chr2:68592394..68592405,+!p2@PLEK!0.91!7.21!PLEK;;chr3:48282587..48282603,+!p1@ZNF589!0.90!32.20!ZNF589;;chr7:50344251..50344288,+!p3@IKZF1!0.90!6.95!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!0.88!185.71!TSC22D3;;chr1:25256756..25256774,-!p1@RUNX3!0.88!12.88!RUNX3;;chr4:106068026..106068084,+!p1@TET2!0.87!61.82!TET2;;chr2:231090433..231090469,+!p1@SP140!0.87!6.44!SP140;;chr1:158979686..158979745,+!p1@IFI16!0.86!216.11!IFI16;;chr19:35759824..35759891,+!p1@USF2!0.86!204.52!USF2;;chr12:12764947..12764986,+!p2@CREBL2!0.86!12.62!CREBL2;;chr1:221053049..221053075,+!p3@HLX!0.86!11.33!HLX;;chr2:192015750..192015793,-!p2@STAT4!0.86!8.50!STAT4;;chr21:30672433..30672464,+!p6@BACH1!0.86!6.18!BACH1;;chr16:79633682..79633694,-!p12@MAF!0.86!6.18!MAF;;chr8:48650715..48650735,-!p1@CEBPD!0.85!817.29!CEBPD;;chr5:88179017..88179046,-!p2@MEF2C!0.85!25.76!MEF2C;;chr18:52989031..52989079,-!p2@TCF4!0.85!14.94!TCF4;;chr16:88752889..88752921,-!p1@SNAI3!0.85!7.21!SNAI3;;chr4:87857433..87857472,+!p9@AFF1!0.84!11.08!AFF1;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.92!ZFY;;chr11:47399947..47399961,-!p3@SPI1!0.84!5.92!SPI1;;chr7:149470641..149470694,-!p1@ZNF467!0.83!27.82!ZNF467;;chrX:131623044..131623089,-!p1@MBNL3!0.83!25.76!MBNL3;;chr20:3388238..3388323,-!p1@C20orf194!0.82!42.50!C20orf194;;chr3:114866084..114866118,-!p2@ZBTB20!0.82!21.89!ZBTB20;;chr11:113930291..113930339,+!p2@ZBTB16!0.82!9.53!ZBTB16;;chr9:88969287..88969297,-!p3@ZCCHC6!0.82!7.73!ZCCHC6;;chr19:13213704..13213726,-!p3@LYL1!0.81!7.47!LYL1;;chrX:107019163..107019179,-!p7@TSC22D3!0.81!6.44!TSC22D3;;chrX:107018836..107018862,-!p8@TSC22D3!0.81!5.41!TSC22D3;;chr20:3321190..3321215,-!p7@C20orf194!0.81!5.41!C20orf194;;chr2:145277792..145277808,-!p15@ZEB2!0.81!5.41!ZEB2;;chr2:145277833..145277845,-!p16@ZEB2!0.81!5.41!ZEB2;;chr2:48541789.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002619;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0000222
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor3.CNhs11904.11386-118B9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor3.CNhs11904.11386-118B9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor3.CNhs11904.11386-118B9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor3.CNhs11904.11386-118B9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocyte%2520derived%2520endothelial%2520progenitor%2520cells%252c%2520donor3.CNhs11904.11386-118B9.hg38.nobarcode.ctss.bed.gz
|id=FF:11386-118B9
|id=FF:11386-118B9
|is_a=CL:0000576;;EFO:0002091;;FF:0000248
|is_a=CL:0000576;;EFO:0002091;;FF:0000248
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11904
|library_id=CNhs11904
|library_id_phase_based=2:CNhs11904
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11386
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTGGCC.11386
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11386
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTGGCC.11386
|name=CD14+ monocyte derived endothelial progenitor cells, donor3
|name=CD14+ monocyte derived endothelial progenitor cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11904,LSID834,release010,COMPLETED
|profile_hcage=CNhs11904,LSID834,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 87: Line 106:
|top_motifs=SREBF1,2:3.59320737564;TLX2:2.31425201817;STAT1,3:1.6670426284;EN1,2:1.4975863367;RXRA_VDR{dimer}:1.43483223894;IKZF2:1.33399451742;SPIB:1.31947305056;DMAP1_NCOR{1,2}_SMARC:1.29576435909;IRF1,2:1.21854576005;SPI1:1.20562464209;ELF1,2,4:1.20562451603;IRF7:1.20454978578;AR:1.09851745186;ETS1,2:0.975387412527;RORA:0.949744121685;MAFB:0.909146536405;FOXO1,3,4:0.879162826472;NFE2L2:0.877023767156;TGIF1:0.865479055295;NKX2-2,8:0.838704563917;NFIX:0.772807007922;ARID5B:0.76232818431;FOX{F1,F2,J1}:0.731395657862;NFIL3:0.71606207183;HNF4A_NR2F1,2:0.712907760278;FOX{D1,D2}:0.670985883712;EBF1:0.666027705168;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.590048857119;RUNX1..3:0.562903075591;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.535434039494;CUX2:0.534152909667;VSX1,2:0.532570157566;STAT2,4,6:0.529750364468;NANOG{mouse}:0.519264620993;T:0.509537641735;ESR1:0.502721683153;PAX1,9:0.497881768109;FOXA2:0.490768707488;PAX2:0.440484043879;PDX1:0.415356694385;TFCP2:0.380215159438;FOXN1:0.367891015059;CEBPA,B_DDIT3:0.35690424201;FOXP1:0.316585757723;HMX1:0.305698363028;NKX3-2:0.300357960996;EP300:0.298226518309;PAX8:0.265610737832;ZBTB16:0.261465841405;NHLH1,2:0.234604861759;PRRX1,2:0.231069923107;CDX1,2,4:0.225309190199;FOXP3:0.220436999656;FOXD3:0.213920039065;MYFfamily:0.209065670573;GATA4:0.202112009478;NR6A1:0.195358154521;SMAD1..7,9:0.174449376325;PAX6:0.16918553711;FOX{I1,J2}:0.167573374108;ESRRA:0.165244964209;PRDM1:0.155951261652;TFAP4:0.145479099094;NKX2-3_NKX2-5:0.115047356588;HAND1,2:0.110603466379;POU5F1:0.092363014363;OCT4_SOX2{dimer}:0.0912232327252;BPTF:0.0743591048548;GATA6:0.0637152680595;YY1:0.0608524665349;HBP1_HMGB_SSRP1_UBTF:0.0525508870599;ELK1,4_GABP{A,B1}:0.0511384546536;HLF:0.0412921638096;STAT5{A,B}:0.0398394420832;NFE2:0.0329033168976;MYOD1:0.0170034798492;MYB:-0.0139643021222;ADNP_IRX_SIX_ZHX:-0.0243905646634;NFKB1_REL_RELA:-0.04753568793;TAL1_TCF{3,4,12}:-0.0584647914489;NRF1:-0.059060784278;DBP:-0.0801393797923;SPZ1:-0.083630676397;RBPJ:-0.0888247530108;NR5A1,2:-0.0922535846633;ZNF143:-0.0961818224736;ZNF238:-0.109415690439;RXR{A,B,G}:-0.115666422007;HMGA1,2:-0.141603592562;RFX2..5_RFXANK_RFXAP:-0.149603718782;MTF1:-0.174693075381;NANOG:-0.210572185092;PAX5:-0.210803102273;TOPORS:-0.212775449967;TFAP2{A,C}:-0.223485637803;SP1:-0.224398734547;ZFP161:-0.229312766628;PITX1..3:-0.230889548189;HSF1,2:-0.239630861099;NKX6-1,2:-0.249847265629;LHX3,4:-0.250094601242;ALX1:-0.264091964578;FOSL2:-0.288367494948;ATF4:-0.299349462051;FOXQ1:-0.308135105634;KLF4:-0.308639892812;LMO2:-0.316968093481;MZF1:-0.323572797201;MAZ:-0.330033559888;MED-1{core}:-0.365513489261;SOX2:-0.372066288146;EVI1:-0.372468602955;ZNF148:-0.395969414696;HNF1A:-0.418787979306;GLI1..3:-0.418940966816;PAX4:-0.420599543117;bHLH_family:-0.420836164763;EGR1..3:-0.443222081044;HES1:-0.454746247029;POU1F1:-0.462757450649;REST:-0.463773087908;ATF5_CREB3:-0.477549607362;PPARG:-0.478988843415;CRX:-0.482795072477;PATZ1:-0.485260846629;FOS_FOS{B,L1}_JUN{B,D}:-0.493592926969;ATF2:-0.517290355725;BREu{core}:-0.541479874912;AHR_ARNT_ARNT2:-0.559475555104;SOX{8,9,10}:-0.56049037557;HOX{A4,D4}:-0.573853578082;BACH2:-0.573915906221;AIRE:-0.594905116715;CREB1:-0.623027228633;NR3C1:-0.634596438655;GTF2I:-0.648969439053;ZBTB6:-0.658140128253;HIF1A:-0.663376416923;PAX3,7:-0.685653870463;ZEB1:-0.694773496594;MTE{core}:-0.702422145669;LEF1_TCF7_TCF7L1,2:-0.708117505744;NFATC1..3:-0.711366154913;TLX1..3_NFIC{dimer}:-0.723195799057;GZF1:-0.733115019578;SOX5:-0.74523274756;E2F1..5:-0.754201033652;ALX4:-0.754521372052;XBP1:-0.766708608286;SNAI1..3:-0.769354193551;XCPE1{core}:-0.77410848361;ZNF423:-0.791455060206;HOX{A5,B5}:-0.794931131344;IKZF1:-0.797007735834;MYBL2:-0.838509701337;SOX17:-0.83976622766;HIC1:-0.841743375802;HOX{A6,A7,B6,B7}:-0.846979142348;TFDP1:-0.849407168113;TFAP2B:-0.856369628977;GFI1B:-0.861395553414;MEF2{A,B,C,D}:-0.893319893444;NFY{A,B,C}:-0.90962382597;GTF2A1,2:-0.930357062249;RREB1:-0.969255816206;HOXA9_MEIS1:-1.04120832003;GFI1:-1.06048627278;UFEwm:-1.0810092918;TEAD1:-1.11838275801;FOXM1:-1.12215822174;CDC5L:-1.12435087519;GCM1,2:-1.1402323025;ATF6:-1.18217614687;POU3F1..4:-1.19418379064;NFE2L1:-1.19584404239;TBP:-1.25522821834;NR1H4:-1.27814521235;POU6F1:-1.28518271553;TP53:-1.30910989252;RFX1:-1.32932135042;POU2F1..3:-1.39291923216;SRF:-1.42509571733;NKX3-1:-1.43178705994;PBX1:-1.43516043151;NKX2-1,4:-1.56654875673;TEF:-1.65962011368;ZNF384:-1.66375362937;JUN:-1.69706289228;ONECUT1,2:-1.82674467184;FOXL1:-1.98384228776;TBX4,5:-2.06873620823;ZIC1..3:-2.20316489384
|top_motifs=SREBF1,2:3.59320737564;TLX2:2.31425201817;STAT1,3:1.6670426284;EN1,2:1.4975863367;RXRA_VDR{dimer}:1.43483223894;IKZF2:1.33399451742;SPIB:1.31947305056;DMAP1_NCOR{1,2}_SMARC:1.29576435909;IRF1,2:1.21854576005;SPI1:1.20562464209;ELF1,2,4:1.20562451603;IRF7:1.20454978578;AR:1.09851745186;ETS1,2:0.975387412527;RORA:0.949744121685;MAFB:0.909146536405;FOXO1,3,4:0.879162826472;NFE2L2:0.877023767156;TGIF1:0.865479055295;NKX2-2,8:0.838704563917;NFIX:0.772807007922;ARID5B:0.76232818431;FOX{F1,F2,J1}:0.731395657862;NFIL3:0.71606207183;HNF4A_NR2F1,2:0.712907760278;FOX{D1,D2}:0.670985883712;EBF1:0.666027705168;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.590048857119;RUNX1..3:0.562903075591;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.535434039494;CUX2:0.534152909667;VSX1,2:0.532570157566;STAT2,4,6:0.529750364468;NANOG{mouse}:0.519264620993;T:0.509537641735;ESR1:0.502721683153;PAX1,9:0.497881768109;FOXA2:0.490768707488;PAX2:0.440484043879;PDX1:0.415356694385;TFCP2:0.380215159438;FOXN1:0.367891015059;CEBPA,B_DDIT3:0.35690424201;FOXP1:0.316585757723;HMX1:0.305698363028;NKX3-2:0.300357960996;EP300:0.298226518309;PAX8:0.265610737832;ZBTB16:0.261465841405;NHLH1,2:0.234604861759;PRRX1,2:0.231069923107;CDX1,2,4:0.225309190199;FOXP3:0.220436999656;FOXD3:0.213920039065;MYFfamily:0.209065670573;GATA4:0.202112009478;NR6A1:0.195358154521;SMAD1..7,9:0.174449376325;PAX6:0.16918553711;FOX{I1,J2}:0.167573374108;ESRRA:0.165244964209;PRDM1:0.155951261652;TFAP4:0.145479099094;NKX2-3_NKX2-5:0.115047356588;HAND1,2:0.110603466379;POU5F1:0.092363014363;OCT4_SOX2{dimer}:0.0912232327252;BPTF:0.0743591048548;GATA6:0.0637152680595;YY1:0.0608524665349;HBP1_HMGB_SSRP1_UBTF:0.0525508870599;ELK1,4_GABP{A,B1}:0.0511384546536;HLF:0.0412921638096;STAT5{A,B}:0.0398394420832;NFE2:0.0329033168976;MYOD1:0.0170034798492;MYB:-0.0139643021222;ADNP_IRX_SIX_ZHX:-0.0243905646634;NFKB1_REL_RELA:-0.04753568793;TAL1_TCF{3,4,12}:-0.0584647914489;NRF1:-0.059060784278;DBP:-0.0801393797923;SPZ1:-0.083630676397;RBPJ:-0.0888247530108;NR5A1,2:-0.0922535846633;ZNF143:-0.0961818224736;ZNF238:-0.109415690439;RXR{A,B,G}:-0.115666422007;HMGA1,2:-0.141603592562;RFX2..5_RFXANK_RFXAP:-0.149603718782;MTF1:-0.174693075381;NANOG:-0.210572185092;PAX5:-0.210803102273;TOPORS:-0.212775449967;TFAP2{A,C}:-0.223485637803;SP1:-0.224398734547;ZFP161:-0.229312766628;PITX1..3:-0.230889548189;HSF1,2:-0.239630861099;NKX6-1,2:-0.249847265629;LHX3,4:-0.250094601242;ALX1:-0.264091964578;FOSL2:-0.288367494948;ATF4:-0.299349462051;FOXQ1:-0.308135105634;KLF4:-0.308639892812;LMO2:-0.316968093481;MZF1:-0.323572797201;MAZ:-0.330033559888;MED-1{core}:-0.365513489261;SOX2:-0.372066288146;EVI1:-0.372468602955;ZNF148:-0.395969414696;HNF1A:-0.418787979306;GLI1..3:-0.418940966816;PAX4:-0.420599543117;bHLH_family:-0.420836164763;EGR1..3:-0.443222081044;HES1:-0.454746247029;POU1F1:-0.462757450649;REST:-0.463773087908;ATF5_CREB3:-0.477549607362;PPARG:-0.478988843415;CRX:-0.482795072477;PATZ1:-0.485260846629;FOS_FOS{B,L1}_JUN{B,D}:-0.493592926969;ATF2:-0.517290355725;BREu{core}:-0.541479874912;AHR_ARNT_ARNT2:-0.559475555104;SOX{8,9,10}:-0.56049037557;HOX{A4,D4}:-0.573853578082;BACH2:-0.573915906221;AIRE:-0.594905116715;CREB1:-0.623027228633;NR3C1:-0.634596438655;GTF2I:-0.648969439053;ZBTB6:-0.658140128253;HIF1A:-0.663376416923;PAX3,7:-0.685653870463;ZEB1:-0.694773496594;MTE{core}:-0.702422145669;LEF1_TCF7_TCF7L1,2:-0.708117505744;NFATC1..3:-0.711366154913;TLX1..3_NFIC{dimer}:-0.723195799057;GZF1:-0.733115019578;SOX5:-0.74523274756;E2F1..5:-0.754201033652;ALX4:-0.754521372052;XBP1:-0.766708608286;SNAI1..3:-0.769354193551;XCPE1{core}:-0.77410848361;ZNF423:-0.791455060206;HOX{A5,B5}:-0.794931131344;IKZF1:-0.797007735834;MYBL2:-0.838509701337;SOX17:-0.83976622766;HIC1:-0.841743375802;HOX{A6,A7,B6,B7}:-0.846979142348;TFDP1:-0.849407168113;TFAP2B:-0.856369628977;GFI1B:-0.861395553414;MEF2{A,B,C,D}:-0.893319893444;NFY{A,B,C}:-0.90962382597;GTF2A1,2:-0.930357062249;RREB1:-0.969255816206;HOXA9_MEIS1:-1.04120832003;GFI1:-1.06048627278;UFEwm:-1.0810092918;TEAD1:-1.11838275801;FOXM1:-1.12215822174;CDC5L:-1.12435087519;GCM1,2:-1.1402323025;ATF6:-1.18217614687;POU3F1..4:-1.19418379064;NFE2L1:-1.19584404239;TBP:-1.25522821834;NR1H4:-1.27814521235;POU6F1:-1.28518271553;TP53:-1.30910989252;RFX1:-1.32932135042;POU2F1..3:-1.39291923216;SRF:-1.42509571733;NKX3-1:-1.43178705994;PBX1:-1.43516043151;NKX2-1,4:-1.56654875673;TEF:-1.65962011368;ZNF384:-1.66375362937;JUN:-1.69706289228;ONECUT1,2:-1.82674467184;FOXL1:-1.98384228776;TBX4,5:-2.06873620823;ZIC1..3:-2.20316489384
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11386-118B9;search_select_hide=table117:FF:11386-118B9
|DRA_sample_Accession=CAGE@DRS008024
|accession_numbers=DRX008131;DRR009003;DRZ000428;DRZ001813;CAGE
|library_id=CNhs11904
}}
}}

Latest revision as of 17:56, 4 June 2020

Name:CD14+ monocyte derived endothelial progenitor cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11904
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage46 years old adult
sexmale
age46
cell typeblood vessel endothelial progenitor cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberEPC724
catalog number3H100-81-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004934
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11904 CAGE DRX008131 DRR009003
Accession ID Hg19

Library idBAMCTSS
CNhs11904 DRZ000428 DRZ001813
Accession ID Hg38

Library idBAMCTSS
CNhs11904 DRZ011778 DRZ013163
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004934
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.GTGGCC sRNA-Seq DRX037143 DRR041509
Accession ID Hg19

Library idBAMCTSS
SRhi10009.GTGGCC DRZ007151


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.175
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.247
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.687
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0995
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.225
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.00649
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.343
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.584
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0741
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0287
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.7
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.761
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.309
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0339
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0585
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0995
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.587
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature7.66873e-4
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.335
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0527
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.359
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.359
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0995
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung1.13
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.406
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0995
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11904

Jaspar motifP-value
MA0002.23.89423e-5
MA0003.10.204
MA0004.10.116
MA0006.10.704
MA0007.10.0719
MA0009.10.0852
MA0014.10.481
MA0017.12.6241e-4
MA0018.27.31345e-4
MA0019.10.648
MA0024.10.00458
MA0025.10.905
MA0027.10.526
MA0028.10.176
MA0029.10.716
MA0030.10.585
MA0031.10.269
MA0035.20.854
MA0038.10.209
MA0039.20.475
MA0040.10.638
MA0041.10.507
MA0042.10.753
MA0043.10.0157
MA0046.10.863
MA0047.20.0286
MA0048.10.154
MA0050.14.14589e-7
MA0051.10.0166
MA0052.10.0263
MA0055.10.214
MA0057.10.926
MA0058.10.00442
MA0059.10.731
MA0060.13.19107e-6
MA0061.10.184
MA0062.24.43869e-6
MA0065.20.0252
MA0066.10.168
MA0067.10.122
MA0068.10.297
MA0069.10.634
MA0070.10.0671
MA0071.10.192
MA0072.10.715
MA0073.10.396
MA0074.10.144
MA0076.10.167
MA0077.10.486
MA0078.10.646
MA0079.20.0279
MA0080.23.60226e-18
MA0081.11.18292e-4
MA0083.13.37209e-4
MA0084.10.301
MA0087.10.342
MA0088.10.34
MA0090.10.0145
MA0091.10.173
MA0092.10.998
MA0093.10.104
MA0099.20.218
MA0100.10.986
MA0101.10.745
MA0102.20.00121
MA0103.10.828
MA0104.20.953
MA0105.10.0424
MA0106.10.223
MA0107.10.824
MA0108.23.32226e-11
MA0111.10.186
MA0112.20.00205
MA0113.10.141
MA0114.10.00876
MA0115.10.628
MA0116.11.78979e-4
MA0117.10.706
MA0119.10.931
MA0122.10.496
MA0124.10.255
MA0125.10.459
MA0131.10.355
MA0135.10.192
MA0136.15.77955e-16
MA0137.20.00766
MA0138.20.971
MA0139.10.85
MA0140.10.984
MA0141.10.0327
MA0142.10.146
MA0143.10.0535
MA0144.10.0116
MA0145.10.22
MA0146.10.0362
MA0147.10.452
MA0148.10.396
MA0149.10.285
MA0150.10.0794
MA0152.10.389
MA0153.10.167
MA0154.10.00223
MA0155.10.924
MA0156.15.19765e-11
MA0157.10.0655
MA0159.10.0551
MA0160.10.0301
MA0162.10.795
MA0163.12.31129e-5
MA0164.10.597
MA0258.10.00383
MA0259.10.186



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11904

Novel motifP-value
10.198
100.0453
1000.738
1010.257
1020.714
1030.103
1040.93
1050.39
1060.136
1070.533
1080.862
1090.114
110.144
1100.46
1110.0434
1120.415
1130.823
1140.0451
1150.139
1160.968
1170.0199
1180.426
1190.0378
120.442
1200.431
1210.884
1220.253
1230.041
1240.234
1250.345
1260.0789
1270.11
1280.0883
1290.957
130.0916
1300.872
1310.476
1320.695
1330.986
1340.565
1350.342
1360.726
1370.00869
1380.103
1390.0421
140.133
1400.0922
1410.619
1420.215
1430.454
1440.31
1450.402
1460.896
1470.216
1480.0249
1490.745
150.24
1500.467
1510.803
1520.634
1530.615
1540.84
1550.264
1560.84
1570.38
1580.654
1590.21
160.345
1600.99
1610.331
1620.538
1630.548
1640.207
1650.159
1660.477
1670.578
1680.294
1690.0588
170.382
180.572
190.255
20.761
200.955
210.447
220.126
230.456
240.0331
250.461
260.114
270.132
280.49
290.323
30.0173
300.703
310.346
320.86
330.851
340.268
350.332
360.251
370.185
380.103
390.886
40.827
400.314
410.144
420.353
430.1
440.67
450.448
460.199
470.517
480.295
490.136
50.2
500.682
510.529
520.275
530.158
540.359
550.0396
560.734
570.596
580.0885
590.116
60.465
600.0792
610.158
620.126
630.344
640.435
650.151
660.841
670.107
680.456
690.878
70.16
700.0393
710.0767
720.264
730.101
740.706
750.0339
760.294
770.286
780.116
790.437
80.273
800.138
810.234
820.0808
830.579
840.785
850.0507
860.0171
870.118
880.253
890.439
90.288
900.0198
910.868
920.0644
930.878
940.111
950.735
960.159
970.801
980.369
990.47



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11904


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0000766 (myeloid leukocyte)
0002078 (meso-epithelial cell)
0000219 (motile cell)
0000215 (barrier cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000576 (monocyte)
0000115 (endothelial cell)
0000566 (angioblastic mesenchymal cell)
0002619 (adult endothelial progenitor cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000248 (human endothelial progenitor cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

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