FF:11395-118C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005345 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005345 | ||
|accession_numbers=CAGE;DRX008276;DRR009148;DRZ000573;DRZ001958;DRZ011923;DRZ013308 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037029;DRR041395;DRZ007037 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.94!97.80!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.80!82.84!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.78!97.53!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.63!52.64!TFAP2C;;chr6:34204921..34204939,+!p3@HMGA1!1.60!1104.38!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.55!42.67!FOXF1;;chr15:42749722..42749739,-!p2@ZFP106!1.54!59.57!ZFP106;;chr2:19558373..19558392,-!p1@OSR1!1.52!85.06!OSR1;;chr14:37131058..37131139,+!p1@PAX9!1.49!29.65!PAX9;;chr11:65686802..65686818,+!p6@DRAP1!1.36!37.40!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!1.33!27.98!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.31!60.95!TWIST2;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.03!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.30!19.12!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.29!18.29!SIX2;;chr14:61116183..61116208,-!p1@SIX1!1.28!67.33!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.27!20.23!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.26!42.39!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.25!75.92!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.24!44.05!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.23!16.90!GLIS1;;chr3:141121847..141121868,+!p5@ZBTB38!1.20!22.72!ZBTB38;;chr11:65667846..65667868,-!p1@FOSL1!1.16!353.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.15!70.37!ETV1;;chr11:65667884..65667895,-!p2@FOSL1!1.15!50.70!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.14!54.58!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!1.13!12.47!RFX8;;chr2:96012397..96012417,+!p3@KCNIP3!1.12!12.19!KCNIP3;;chr3:141105705..141105770,+!p4@ZBTB38!1.11!14.41!ZBTB38;;chr9:96717629..96717644,-!p1@BARX1!1.10!11.64!BARX1;;chr20:42543441..42543497,+!p1@TOX2!1.08!50.43!TOX2;;chr7:19157248..19157268,-!p1@TWIST1!1.08!30.48!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.07!18.29!TWIST2;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.53!PRRX1;;chr20:55205825..55205847,+!p2@TFAP2C!1.06!10.53!TFAP2C;;chr9:132427883..132427951,+!p2@PRRX2!1.06!10.53!PRRX2;;chr1:170633058..170633084,+!p5@PRRX1!1.05!10.25!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!1.04!9.97!ZFY;;chr8:93074803..93074845,-!p1@RUNX1T1!1.04!9.97!RUNX1T1;;chr1:170632137..170632172,+!p10@PRRX1!1.03!9.70!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!1.02!28.54!ZHX3;;chr3:157823517..157823562,-!p1@SHOX2!1.02!10.25!SHOX2;;chr2:200323414..200323455,-!p1@SATB2!1.01!20.23!SATB2;;chr2:200322654..200322707,-!p2@SATB2!0.98!12.47!SATB2;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.42!PRRX1;;chr10:28034739..28034756,-!p1@MKX!0.98!8.59!MKX;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.31!RUNX1T1;;chr12:66218212..66218244,+!p5@HMGA2!0.96!11.91!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.96!8.03!TCF12;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.71!TBX3;;chr3:141087393..141087426,+!p3@ZBTB38!0.95!32.69!ZBTB38;;chr2:223163706..223163730,-!p1@PAX3!0.94!7.76!PAX3;;chr1:170632115..170632136,+!p9@PRRX1!0.94!7.76!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.76!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.76!KDM5D;;chr9:132427972..132428056,+!p1@PRRX2!0.92!9.70!PRRX2;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.20!RFX8;;chr18:52969844..52969895,-!p27@TCF4!0.91!7.20!TCF4;;chr6:10412600..10412637,-!p1@TFAP2A!0.90!11.91!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!0.90!7.76!RORB;;chr12:115122318..115122331,-!p2@TBX3!0.90!6.93!TBX3;;chr2:96012353..96012378,+!p4@KCNIP3!0.90!6.93!KCNIP3;;chr3:141121820..141121838,+!p9@ZBTB38!0.90!6.93!ZBTB38;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.02!RUNX3;;chr4:81118647..81118666,+!p1@PRDM8!0.89!9.14!PRDM8;;chr19:13134772..13134822,+!p2@NFIX!0.88!9.97!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!0.87!91.43!ARID5B;;chr6:85473156..85473210,-!p2@TBX18!0.87!8.03!TBX18;;chr5:139492456..139492489,+!p7@PURA!0.87!6.37!PURA;;chr1:170632439..170632465,+!p11@PRRX1!0.87!6.37!PRRX1;;chr3:141087339..141087387,+!p2@ZBTB38!0.86!67.60!ZBTB38;;chrX:66763856..66763896,+!p1@AR!0.86!9.14!AR;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.76!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!0.85!60.40!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!0.84!14.96!TOX2;;chr12:115122005..115122016,-!p3@TBX3!0.84!7.20!TBX3;;chr12:115121802..115121814,-!p5@TBX3!0.83!5.82!TBX3;;chr4:299227..299272,-!p1@ZNF732!0.82!5.54!ZNF732;;chr7:44143925..44143970,+!p1@AEBP1!0.80!128.28!AEBP1;;chr7:14029312..14029325,-!p4@ETV1!0.78!6.37!ETV1;;chr2:172949484..172949522,+!p1@DLX1!0.78!4.99!DLX1;;chr2:96012298..96012317,+!p6@KCNIP3!0.78!4.99!KCNIP3;;chr16:86600870..86600921,+!p2@FOXC2!0.78!4.99!FOXC2;;chr12:96588219..96588263,+!p2@ELK3!0.77!38.51!ELK3;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.59!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.76!4.71!HMGA2;;chr1:170632051..170632081,+!p16@PRRX1!0.76!4.71!PRRX1;;chr3:114343039..114343085,-!p8@ZBTB20!0.76!4.71!ZBTB20;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.51!SNAI2;;chr7:17338266..17338282,+!p1@AHR!0.74!54.03!AHR;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.86!SNAI2;;chr12:66218573..66218596,+!p7@HMGA2!0.74!6.93!HMGA2;;chr10:31607702..31607755,+!p3@ZEB1!0.74!5.26!ZEB1;;chr14:61116168..61116180,-!p2@SIX1!0.74!5.26!SIX1;;chr18:52969674..52969685,-!p24@TCF4!0.74!4.43!TCF4;;chr1:170632310..170632321,+!p15@PRRX1!0.74!4.43!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.73!17.46!BRCA1;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.72!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.72!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.72!24.66!HIF1A;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.36!TWIST1;;chr6:1389824..1389840,+!p3@FOXF2!0.71!4.16!FOXF2;;chr6:34204672..34204692,+!p1@HMGA1!0.70!511.18!HMGA1;;chr12:96588143..96588185,+!p1@ELK3!0.69!54.03!ELK3;;chr17:56065729..56065781,-!p2@VEZF1!0.69!18.84!VEZF1;;chr5:139487608..139487663,+!p3@PURA!0.69!9.14!PURA;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.48!NR4A3;;chr7:14028488..14028516,-!p2@ETV1!0.69!4.43!ETV1;;chr12:115122303..115122314,-!p6@TBX3!0.69!3.88!TBX3;;chr12:2986206..2986258,-!p2@FOXM1!0.68!26.04!FOXM1;;chr4:4861385..4861398,+!p1@MSX1!0.68!12.47!MSX1;;chr8:67525473..67525518,-!p1@MYBL1!0.68!9.42!MYBL1;;chr17:7492684..7492778,-!p2@SOX15!0.67!8.59!SOX15;;chr12:66218183..66218209,+!p4@HMGA2!0.67!7.76!HMGA2;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.56!DRAP1;;chr12:115121770..115121781,-!p4@TBX3!0.66!3.60!TBX3;;chr14:37126765..37126799,+!p2@PAX9!0.66!3.60!PAX9;;chr19:13135386..13135435,+!p4@NFIX!0.66!3.60!NFIX;;chr6:1389989..1390019,+!p2@FOXF2!0.66!3.60!FOXF2;;chr2:45236579..45236596,-!p2@SIX2!0.66!3.60!SIX2;;chr3:141121871..141121885,+!p13@ZBTB38!0.66!3.60!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.66!3.60!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.66!3.60!LHX8;;chr20:55205791..55205817,+!p3@TFAP2C!0.66!3.60!TFAP2C;;chr10:31608127..31608156,+!p1@ZEB1!0.65!74.81!ZEB1;;chr10:63809134..63809145,+!p6@ARID5B!0.65!8.87!ARID5B;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.65!NFIX;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.99!DRAP1;;chr11:6947647..6947698,+!p2@ZNF215!0.65!4.99!ZNF215;;chr5:321810..321877,+!p1@AHRR!0.64!12.19!AHRR;;chr9:102584262..102584276,+!p1@NR4A3!0.64!8.31!NR4A3;;chr6:85474299..85474324,-!p1@TBX18!0.64!6.65!TBX18;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.54!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.54!IFI16;;chr2:95963052..95963106,+!p1@KCNIP3!0.64!3.32!KCNIP3;;chrX:66763914..66763933,+!p3@AR!0.64!3.32!AR;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.51!FOXM1;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.65!AEBP1;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.88!BNC1;;chr17:59477233..59477263,+!p1@TBX2!0.62!11.36!TBX2;;chr4:26322267..26322334,+!p3@RBPJ!0.62!8.59!RBPJ;;chr20:39946400..39946423,-!p3@ZHX3!0.62!6.37!ZHX3;;chr1:158979792..158979814,+!p2@IFI16!0.61!34.91!IFI16;;chr11:12696002..12696022,+!p2@TEAD1!0.61!8.59!TEAD1;;chr7:137686763..137686784,-!p5@CREB3L2!0.61!5.82!CREB3L2;;chr2:231084820..231084836,-!p5@SP110!0.61!3.60!SP110;;chr2:172950227..172950249,+!p2@DLX1!0.61!3.05!DLX1;;chr1:170632683..170632696,+!p12@PRRX1!0.61!3.05!PRRX1;;chr16:86600458..86600461,+!p3@FOXC2!0.61!3.05!FOXC2;;chr12:53614115..53614154,-!p1@RARG!0.60!19.12!RARG;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.31!PPARG;;chr3:12329397..12329433,+!p2@PPARG!0.60!7.76!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.60!6.65!ZBTB20;;chrX:66763815..66763854,+!p2@AR!0.60!4.16!AR;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.52!TAL1;;chr14:75988771..75988826,+!p1@BATF!0.59!4.16!BATF;;chr6:42419316..42419340,-!p4@TRERF1!0.58!4.71!TRERF1;;chr11:65668011..65668020,-!p3@FOSL1!0.58!2.77!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.77!HMGA2;;chr12:77459306..77459365,-!p1@E2F7!0.57!41.84!E2F7;;chr22:41697497..41697515,+!p2@ZC3H7B!0.57!8.87!ZC3H7B;;chr8:67525443..67525459,-!p2@MYBL1!0.57!4.43!MYBL1;;chr19:3366570..3366619,+!p1@NFIC!0.56!104.73!NFIC;;chr6:155635583..155635644,-!p1@TFB1M!0.56!42.39!TFB1M;;chr11:65687222..65687240,+!p7@DRAP1!0.56!3.60!DRAP1;;chr4:81104985..81105005,+!p4@PRDM8!0.56!3.32!PRDM8;;chr7:137686791..137686821,-!p1@CREB3L2!0.55!92.54!CREB3L2;;chr3:185826764..185826803,-!p2@ETV5!0.55!11.64!ETV5;;chr18:52989031..52989079,-!p2@TCF4!0.55!6.93!TCF4;;chr19:53496768..53496799,-!p1@ZNF702P!0.55!4.43!ZNF702P;;chr14:62162224..62162254,+!p1@HIF1A!0.54!460.48!HIF1A;;chr7:42276822..42276895,-!p2@GLI3!0.54!8.87!GLI3;;chr6:45390025..45390076,+!p2@RUNX2!0.54!6.93!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.16!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.54!3.32!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.05!DRAP1;;chr12:85673977..85674015,+!p1@ALX1!0.54!2.49!ALX1;;chr14:74256787..74256858,-!p6@C14orf43!0.54!2.49!C14orf43;;chr19:2867325..2867348,+!p1@ZNF556!0.54!2.49!ZNF556;;chr6:134210243..134210257,+!p1@TCF21!0.54!2.49!TCF21;;chr8:116673894..116673913,-!p12@TRPS1!0.54!2.49!TRPS1;;chr19:9609272..9609297,-!p1@ZNF560!0.54!2.49!ZNF560;;chr1:170632762..170632786,+!p13@PRRX1!0.54!2.49!PRRX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.49!ZBTB38;;chr14:73360799..73360817,-!p1@DPF3!0.53!10.25!DPF3;;chr9:16870710..16870763,-!p1@BNC2!0.53!4.71!BNC2;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.77!CREB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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.94!97.80!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.80!82.84!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.78!97.53!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.63!52.64!TFAP2C;;chr6:34204921..34204939,+!p3@HMGA1!1.60!1104.38!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.55!42.67!FOXF1;;chr15:42749722..42749739,-!p2@ZFP106!1.54!59.57!ZFP106;;chr2:19558373..19558392,-!p1@OSR1!1.52!85.06!OSR1;;chr14:37131058..37131139,+!p1@PAX9!1.49!29.65!PAX9;;chr11:65686802..65686818,+!p6@DRAP1!1.36!37.40!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!1.33!27.98!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.31!60.95!TWIST2;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.03!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.30!19.12!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.29!18.29!SIX2;;chr14:61116183..61116208,-!p1@SIX1!1.28!67.33!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.27!20.23!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.26!42.39!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.25!75.92!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.24!44.05!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.23!16.90!GLIS1;;chr3:141121847..141121868,+!p5@ZBTB38!1.20!22.72!ZBTB38;;chr11:65667846..65667868,-!p1@FOSL1!1.16!353.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.15!70.37!ETV1;;chr11:65667884..65667895,-!p2@FOSL1!1.15!50.70!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.14!54.58!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!1.13!12.47!RFX8;;chr2:96012397..96012417,+!p3@KCNIP3!1.12!12.19!KCNIP3;;chr3:141105705..141105770,+!p4@ZBTB38!1.11!14.41!ZBTB38;;chr9:96717629..96717644,-!p1@BARX1!1.10!11.64!BARX1;;chr20:42543441..42543497,+!p1@TOX2!1.08!50.43!TOX2;;chr7:19157248..19157268,-!p1@TWIST1!1.08!30.48!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.07!18.29!TWIST2;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.53!PRRX1;;chr20:55205825..55205847,+!p2@TFAP2C!1.06!10.53!TFAP2C;;chr9:132427883..132427951,+!p2@PRRX2!1.06!10.53!PRRX2;;chr1:170633058..170633084,+!p5@PRRX1!1.05!10.25!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!1.04!9.97!ZFY;;chr8:93074803..93074845,-!p1@RUNX1T1!1.04!9.97!RUNX1T1;;chr1:170632137..170632172,+!p10@PRRX1!1.03!9.70!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!1.02!28.54!ZHX3;;chr3:157823517..157823562,-!p1@SHOX2!1.02!10.25!SHOX2;;chr2:200323414..200323455,-!p1@SATB2!1.01!20.23!SATB2;;chr2:200322654..200322707,-!p2@SATB2!0.98!12.47!SATB2;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.42!PRRX1;;chr10:28034739..28034756,-!p1@MKX!0.98!8.59!MKX;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.31!RUNX1T1;;chr12:66218212..66218244,+!p5@HMGA2!0.96!11.91!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.96!8.03!TCF12;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.71!TBX3;;chr3:141087393..141087426,+!p3@ZBTB38!0.95!32.69!ZBTB38;;chr2:223163706..223163730,-!p1@PAX3!0.94!7.76!PAX3;;chr1:170632115..170632136,+!p9@PRRX1!0.94!7.76!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.76!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.76!KDM5D;;chr9:132427972..132428056,+!p1@PRRX2!0.92!9.70!PRRX2;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.20!RFX8;;chr18:52969844..52969895,-!p27@TCF4!0.91!7.20!TCF4;;chr6:10412600..10412637,-!p1@TFAP2A!0.90!11.91!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!0.90!7.76!RORB;;chr12:115122318..115122331,-!p2@TBX3!0.90!6.93!TBX3;;chr2:96012353..96012378,+!p4@KCNIP3!0.90!6.93!KCNIP3;;chr3:141121820..141121838,+!p9@ZBTB38!0.90!6.93!ZBTB38;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.02!RUNX3;;chr4:81118647..81118666,+!p1@PRDM8!0.89!9.14!PRDM8;;chr19:13134772..13134822,+!p2@NFIX!0.88!9.97!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!0.87!91.43!ARID5B;;chr6:85473156..85473210,-!p2@TBX18!0.87!8.03!TBX18;;chr5:139492456..139492489,+!p7@PURA!0.87!6.37!PURA;;chr1:170632439..170632465,+!p11@PRRX1!0.87!6.37!PRRX1;;chr3:141087339..141087387,+!p2@ZBTB38!0.86!67.60!ZBTB38;;chrX:66763856..66763896,+!p1@AR!0.86!9.14!AR;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.76!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!0.85!60.40!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!0.84!14.96!TOX2;;chr12:115122005..115122016,-!p3@TBX3!0.84!7.20!TBX3;;chr12:115121802..115121814,-!p5@TBX3!0.83!5.82!TBX3;;chr4:299227..299272,-!p1@ZNF732!0.82!5.54!ZNF732;;chr7:44143925..44143970,+!p1@AEBP1!0.80!128.28!AEBP1;;chr7:14029312..14029325,-!p4@ETV1!0.78!6.37!ETV1;;chr2:172949484..172949522,+!p1@DLX1!0.78!4.99!DLX1;;chr2:96012298..96012317,+!p6@KCNIP3!0.78!4.99!KCNIP3;;chr16:86600870..86600921,+!p2@FOXC2!0.78!4.99!FOXC2;;chr12:96588219..96588263,+!p2@ELK3!0.77!38.51!ELK3;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.59!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.76!4.71!HMGA2;;chr1:170632051..170632081,+!p16@PRRX1!0.76!4.71!PRRX1;;chr3:114343039..114343085,-!p8@ZBTB20!0.76!4.71!ZBTB20;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.51!SNAI2;;chr7:17338266..17338282,+!p1@AHR!0.74!54.03!AHR;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.86!SNAI2;;chr12:66218573..66218596,+!p7@HMGA2!0.74!6.93!HMGA2;;chr10:31607702..31607755,+!p3@ZEB1!0.74!5.26!ZEB1;;chr14:61116168..61116180,-!p2@SIX1!0.74!5.26!SIX1;;chr18:52969674..52969685,-!p24@TCF4!0.74!4.43!TCF4;;chr1:170632310..170632321,+!p15@PRRX1!0.74!4.43!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.73!17.46!BRCA1;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.72!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.72!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.72!24.66!HIF1A;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.36!TWIST1;;chr6:1389824..1389840,+!p3@FOXF2!0.71!4.16!FOXF2;;chr6:34204672..34204692,+!p1@HMGA1!0.70!511.18!HMGA1;;chr12:96588143..96588185,+!p1@ELK3!0.69!54.03!ELK3;;chr17:56065729..56065781,-!p2@VEZF1!0.69!18.84!VEZF1;;chr5:139487608..139487663,+!p3@PURA!0.69!9.14!PURA;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.48!NR4A3;;chr7:14028488..14028516,-!p2@ETV1!0.69!4.43!ETV1;;chr12:115122303..115122314,-!p6@TBX3!0.69!3.88!TBX3;;chr12:2986206..2986258,-!p2@FOXM1!0.68!26.04!FOXM1;;chr4:4861385..4861398,+!p1@MSX1!0.68!12.47!MSX1;;chr8:67525473..67525518,-!p1@MYBL1!0.68!9.42!MYBL1;;chr17:7492684..7492778,-!p2@SOX15!0.67!8.59!SOX15;;chr12:66218183..66218209,+!p4@HMGA2!0.67!7.76!HMGA2;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.56!DRAP1;;chr12:115121770..115121781,-!p4@TBX3!0.66!3.60!TBX3;;chr14:37126765..37126799,+!p2@PAX9!0.66!3.60!PAX9;;chr19:13135386..13135435,+!p4@NFIX!0.66!3.60!NFIX;;chr6:1389989..1390019,+!p2@FOXF2!0.66!3.60!FOXF2;;chr2:45236579..45236596,-!p2@SIX2!0.66!3.60!SIX2;;chr3:141121871..141121885,+!p13@ZBTB38!0.66!3.60!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.66!3.60!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.66!3.60!LHX8;;chr20:55205791..55205817,+!p3@TFAP2C!0.66!3.60!TFAP2C;;chr10:31608127..31608156,+!p1@ZEB1!0.65!74.81!ZEB1;;chr10:63809134..63809145,+!p6@ARID5B!0.65!8.87!ARID5B;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.65!NFIX;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.99!DRAP1;;chr11:6947647..6947698,+!p2@ZNF215!0.65!4.99!ZNF215;;chr5:321810..321877,+!p1@AHRR!0.64!12.19!AHRR;;chr9:102584262..102584276,+!p1@NR4A3!0.64!8.31!NR4A3;;chr6:85474299..85474324,-!p1@TBX18!0.64!6.65!TBX18;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.54!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.54!IFI16;;chr2:95963052..95963106,+!p1@KCNIP3!0.64!3.32!KCNIP3;;chrX:66763914..66763933,+!p3@AR!0.64!3.32!AR;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.51!FOXM1;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.65!AEBP1;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.88!BNC1;;chr17:59477233..59477263,+!p1@TBX2!0.62!11.36!TBX2;;chr4:26322267..26322334,+!p3@RBPJ!0.62!8.59!RBPJ;;chr20:39946400..39946423,-!p3@ZHX3!0.62!6.37!ZHX3;;chr1:158979792..158979814,+!p2@IFI16!0.61!34.91!IFI16;;chr11:12696002..12696022,+!p2@TEAD1!0.61!8.59!TEAD1;;chr7:137686763..137686784,-!p5@CREB3L2!0.61!5.82!CREB3L2;;chr2:231084820..231084836,-!p5@SP110!0.61!3.60!SP110;;chr2:172950227..172950249,+!p2@DLX1!0.61!3.05!DLX1;;chr1:170632683..170632696,+!p12@PRRX1!0.61!3.05!PRRX1;;chr16:86600458..86600461,+!p3@FOXC2!0.61!3.05!FOXC2;;chr12:53614115..53614154,-!p1@RARG!0.60!19.12!RARG;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.31!PPARG;;chr3:12329397..12329433,+!p2@PPARG!0.60!7.76!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.60!6.65!ZBTB20;;chrX:66763815..66763854,+!p2@AR!0.60!4.16!AR;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.52!TAL1;;chr14:75988771..75988826,+!p1@BATF!0.59!4.16!BATF;;chr6:42419316..42419340,-!p4@TRERF1!0.58!4.71!TRERF1;;chr11:65668011..65668020,-!p3@FOSL1!0.58!2.77!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.77!HMGA2;;chr12:77459306..77459365,-!p1@E2F7!0.57!41.84!E2F7;;chr22:41697497..41697515,+!p2@ZC3H7B!0.57!8.87!ZC3H7B;;chr8:67525443..67525459,-!p2@MYBL1!0.57!4.43!MYBL1;;chr19:3366570..3366619,+!p1@NFIC!0.56!104.73!NFIC;;chr6:155635583..155635644,-!p1@TFB1M!0.56!42.39!TFB1M;;chr11:65687222..65687240,+!p7@DRAP1!0.56!3.60!DRAP1;;chr4:81104985..81105005,+!p4@PRDM8!0.56!3.32!PRDM8;;chr7:137686791..137686821,-!p1@CREB3L2!0.55!92.54!CREB3L2;;chr3:185826764..185826803,-!p2@ETV5!0.55!11.64!ETV5;;chr18:52989031..52989079,-!p2@TCF4!0.55!6.93!TCF4;;chr19:53496768..53496799,-!p1@ZNF702P!0.55!4.43!ZNF702P;;chr14:62162224..62162254,+!p1@HIF1A!0.54!460.48!HIF1A;;chr7:42276822..42276895,-!p2@GLI3!0.54!8.87!GLI3;;chr6:45390025..45390076,+!p2@RUNX2!0.54!6.93!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.16!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.54!3.32!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.05!DRAP1;;chr12:85673977..85674015,+!p1@ALX1!0.54!2.49!ALX1;;chr14:74256787..74256858,-!p6@C14orf43!0.54!2.49!C14orf43;;chr19:2867325..2867348,+!p1@ZNF556!0.54!2.49!ZNF556;;chr6:134210243..134210257,+!p1@TCF21!0.54!2.49!TCF21;;chr8:116673894..116673913,-!p12@TRPS1!0.54!2.49!TRPS1;;chr19:9609272..9609297,-!p1@ZNF560!0.54!2.49!ZNF560;;chr1:170632762..170632786,+!p13@PRRX1!0.54!2.49!PRRX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.49!ZBTB38;;chr14:73360799..73360817,-!p1@DPF3!0.53!10.25!DPF3;;chr9:16870710..16870763,-!p1@BNC2!0.53!4.71!BNC2;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.77!CREB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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11395-118C9 | |id=FF:11395-118C9 | ||
|is_a=EFO:0002091;;FF:0000067 | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11907 | |||
|library_id_phase_based=2:CNhs11907 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11395 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTTTCG.11395 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11395 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTTTCG.11395 | |||
|name=Fibroblast - Periodontal Ligament, donor3 | |name=Fibroblast - Periodontal Ligament, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11907,LSID834,release010,COMPLETED | |profile_hcage=CNhs11907,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.255884742944911,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.161961720070343,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.155992340795804,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.323923440140686,0,0,0,-0.0969923612426051,0,0,0.00886907451546257,0,0,0,0,0,0,0,0,0.10621270172856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05310635086428,0,0,-0.1214303580693,-0.158091051831589,0,0,0,0.10621270172856,0.0081773504908531,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508307439867663,0,0,0,-0.149472516243459,-0.357711706254271,0,0,-0.0418495518922339,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC2635 | |rna_catalog_number=SC2635 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=118C9 | |rna_tube_id=118C9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.GTTTCG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=PDX1:2.04858239889;ZNF238:1.59108139655;NFIX:1.23486110522;TFDP1:1.12781139101;NR3C1:1.10619275809;PAX8:1.04205510728;FOX{I1,J2}:1.03947186154;GFI1:1.00301332427;FOXA2:0.999241934949;GZF1:0.966321409211;TFAP4:0.936068972453;NKX2-2,8:0.911117583578;MYB:0.891733650835;NFATC1..3:0.877050668545;EN1,2:0.863002198916;SOX17:0.754954005216;LEF1_TCF7_TCF7L1,2:0.746434345393;ALX4:0.743581363121;ADNP_IRX_SIX_ZHX:0.693792145038;TGIF1:0.685080351894;PAX3,7:0.683285956529;AHR_ARNT_ARNT2:0.6647567672;TEAD1:0.654316186178;bHLH_family:0.640184922262;E2F1..5:0.602580562067;HBP1_HMGB_SSRP1_UBTF:0.591946731127;MZF1:0.591246107504;NFY{A,B,C}:0.578847593518;PRRX1,2:0.558625410064;TBX4,5:0.556232370594;STAT1,3:0.53702658628;BACH2:0.527698494462;HAND1,2:0.523144919775;HOXA9_MEIS1:0.499836127314;TLX1..3_NFIC{dimer}:0.498844618081;HSF1,2:0.484956889415;NRF1:0.462551294865;GFI1B:0.449443725329;SPZ1:0.42591941325;MYBL2:0.417525949297;ZNF143:0.408479831954;HES1:0.401028215437;NKX3-1:0.397773507421;GTF2I:0.393858679872;PAX5:0.392055294709;TEF:0.370519869507;NFE2L2:0.367368874709;FOS_FOS{B,L1}_JUN{B,D}:0.343297925137;TFCP2:0.341766277972;ELK1,4_GABP{A,B1}:0.341120808284;NFE2:0.334252170673;TFAP2{A,C}:0.323715024397;YY1:0.322955332962;TP53:0.321951494171;HOX{A5,B5}:0.301335418883;CRX:0.299704554389;NANOG:0.284756744617;MAZ:0.267751734951;STAT5{A,B}:0.256220855192;SP1:0.252778751427;ZFP161:0.237323229766;LHX3,4:0.235444183297;CEBPA,B_DDIT3:0.226943931541;ELF1,2,4:0.22367713604;MTF1:0.215489820041;FOXN1:0.208944865477;AR:0.190532308096;HOX{A6,A7,B6,B7}:0.190336946438;POU3F1..4:0.183180847429;FOSL2:0.181770511927;ALX1:0.178716342685;POU1F1:0.165047643609;SRF:0.158074495706;GTF2A1,2:0.155324403603;NHLH1,2:0.153713245959;MTE{core}:0.148239307707;HLF:0.146568938608;MAFB:0.144222773328;RBPJ:0.142700478387;NKX3-2:0.142182525233;HMGA1,2:0.135045863368;ZBTB6:0.125924570023;NKX6-1,2:0.100632854361;HIC1:0.0874212380357;EBF1:0.0711246320525;PRDM1:0.0696820784985;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0614192431465;NKX2-1,4:0.0425578592785;SOX5:0.0389400978757;FOXO1,3,4:0.0321466125087;HNF4A_NR2F1,2:0.0166412789926;CREB1:0.0101687342355;PATZ1:-0.0011583120952;FOXQ1:-0.00774829105519;NR1H4:-0.0186684394558;HNF1A:-0.0212993474117;HOX{A4,D4}:-0.031010419034;GATA6:-0.0335036682524;ZIC1..3:-0.0383974587787;ONECUT1,2:-0.0433863789065;MED-1{core}:-0.0438401737122;SREBF1,2:-0.0452598283353;XCPE1{core}:-0.0456954113352;EGR1..3:-0.0546946660246;NFIL3:-0.0607860473733;MYFfamily:-0.0759577337798;DMAP1_NCOR{1,2}_SMARC:-0.0793585890393;FOX{F1,F2,J1}:-0.0864326080191;TFAP2B:-0.0938646331708;MYOD1:-0.0959605180774;NKX2-3_NKX2-5:-0.106785932258;GATA4:-0.117524356898;IRF7:-0.120226815847;ZNF148:-0.120784295899;ESRRA:-0.125331961702;JUN:-0.12944190725;KLF4:-0.140349178372;RFX2..5_RFXANK_RFXAP:-0.146321257477;IRF1,2:-0.14671046648;XBP1:-0.151435196216;RFX1:-0.156072088281;ETS1,2:-0.170209384271;PAX6:-0.173386817806;RUNX1..3:-0.175469550958;ZNF423:-0.181851039377;NANOG{mouse}:-0.20025209137;MEF2{A,B,C,D}:-0.221623129519;ARID5B:-0.224963854765;NFE2L1:-0.247873175459;ATF5_CREB3:-0.251278684961;TAL1_TCF{3,4,12}:-0.262825168535;CDC5L:-0.263387327157;SPIB:-0.268974876433;RXR{A,B,G}:-0.280373195838;IKZF1:-0.283611636769;GCM1,2:-0.292266841896;TBP:-0.301771744387;POU5F1:-0.304246315634;BREu{core}:-0.313560177649;AIRE:-0.323937335031;T:-0.339719407669;SPI1:-0.346984496244;STAT2,4,6:-0.362551024967;POU6F1:-0.364665354147;FOX{D1,D2}:-0.372817774566;NFKB1_REL_RELA:-0.375648510775;FOXD3:-0.376243361098;ESR1:-0.393560969605;CUX2:-0.400547472525;ATF4:-0.420436067058;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.446057922215;OCT4_SOX2{dimer}:-0.452940216983;PAX2:-0.459879981899;ATF6:-0.466924682616;RREB1:-0.477043763378;PBX1:-0.503253414852;EVI1:-0.51288658755;PAX4:-0.521428309612;REST:-0.527894598282;FOXL1:-0.534437719045;PPARG:-0.534654819732;HIF1A:-0.536577152858;UFEwm:-0.537856446677;ATF2:-0.560451962968;BPTF:-0.570727171055;SOX{8,9,10}:-0.57319538893;TOPORS:-0.58756971929;POU2F1..3:-0.618821339052;SOX2:-0.641440752594;DBP:-0.647211733926;SMAD1..7,9:-0.648497882277;SNAI1..3:-0.651651013803;GLI1..3:-0.682526177938;CDX1,2,4:-0.704273516302;EP300:-0.706995393067;HMX1:-0.716703919881;TLX2:-0.728617850047;ZBTB16:-0.74573861199;ZNF384:-0.764878988178;RORA:-0.810179749275;PAX1,9:-0.816849700733;FOXM1:-0.818580691252;NR5A1,2:-0.840788463307;VSX1,2:-0.86473879184;FOXP3:-0.907160216055;ZEB1:-0.942064177988;RXRA_VDR{dimer}:-0.949248635069;FOXP1:-1.10763465053;PITX1..3:-1.14207976879;LMO2:-1.15188819846;IKZF2:-1.4789611644;NR6A1:-1.52950082534 | |top_motifs=PDX1:2.04858239889;ZNF238:1.59108139655;NFIX:1.23486110522;TFDP1:1.12781139101;NR3C1:1.10619275809;PAX8:1.04205510728;FOX{I1,J2}:1.03947186154;GFI1:1.00301332427;FOXA2:0.999241934949;GZF1:0.966321409211;TFAP4:0.936068972453;NKX2-2,8:0.911117583578;MYB:0.891733650835;NFATC1..3:0.877050668545;EN1,2:0.863002198916;SOX17:0.754954005216;LEF1_TCF7_TCF7L1,2:0.746434345393;ALX4:0.743581363121;ADNP_IRX_SIX_ZHX:0.693792145038;TGIF1:0.685080351894;PAX3,7:0.683285956529;AHR_ARNT_ARNT2:0.6647567672;TEAD1:0.654316186178;bHLH_family:0.640184922262;E2F1..5:0.602580562067;HBP1_HMGB_SSRP1_UBTF:0.591946731127;MZF1:0.591246107504;NFY{A,B,C}:0.578847593518;PRRX1,2:0.558625410064;TBX4,5:0.556232370594;STAT1,3:0.53702658628;BACH2:0.527698494462;HAND1,2:0.523144919775;HOXA9_MEIS1:0.499836127314;TLX1..3_NFIC{dimer}:0.498844618081;HSF1,2:0.484956889415;NRF1:0.462551294865;GFI1B:0.449443725329;SPZ1:0.42591941325;MYBL2:0.417525949297;ZNF143:0.408479831954;HES1:0.401028215437;NKX3-1:0.397773507421;GTF2I:0.393858679872;PAX5:0.392055294709;TEF:0.370519869507;NFE2L2:0.367368874709;FOS_FOS{B,L1}_JUN{B,D}:0.343297925137;TFCP2:0.341766277972;ELK1,4_GABP{A,B1}:0.341120808284;NFE2:0.334252170673;TFAP2{A,C}:0.323715024397;YY1:0.322955332962;TP53:0.321951494171;HOX{A5,B5}:0.301335418883;CRX:0.299704554389;NANOG:0.284756744617;MAZ:0.267751734951;STAT5{A,B}:0.256220855192;SP1:0.252778751427;ZFP161:0.237323229766;LHX3,4:0.235444183297;CEBPA,B_DDIT3:0.226943931541;ELF1,2,4:0.22367713604;MTF1:0.215489820041;FOXN1:0.208944865477;AR:0.190532308096;HOX{A6,A7,B6,B7}:0.190336946438;POU3F1..4:0.183180847429;FOSL2:0.181770511927;ALX1:0.178716342685;POU1F1:0.165047643609;SRF:0.158074495706;GTF2A1,2:0.155324403603;NHLH1,2:0.153713245959;MTE{core}:0.148239307707;HLF:0.146568938608;MAFB:0.144222773328;RBPJ:0.142700478387;NKX3-2:0.142182525233;HMGA1,2:0.135045863368;ZBTB6:0.125924570023;NKX6-1,2:0.100632854361;HIC1:0.0874212380357;EBF1:0.0711246320525;PRDM1:0.0696820784985;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0614192431465;NKX2-1,4:0.0425578592785;SOX5:0.0389400978757;FOXO1,3,4:0.0321466125087;HNF4A_NR2F1,2:0.0166412789926;CREB1:0.0101687342355;PATZ1:-0.0011583120952;FOXQ1:-0.00774829105519;NR1H4:-0.0186684394558;HNF1A:-0.0212993474117;HOX{A4,D4}:-0.031010419034;GATA6:-0.0335036682524;ZIC1..3:-0.0383974587787;ONECUT1,2:-0.0433863789065;MED-1{core}:-0.0438401737122;SREBF1,2:-0.0452598283353;XCPE1{core}:-0.0456954113352;EGR1..3:-0.0546946660246;NFIL3:-0.0607860473733;MYFfamily:-0.0759577337798;DMAP1_NCOR{1,2}_SMARC:-0.0793585890393;FOX{F1,F2,J1}:-0.0864326080191;TFAP2B:-0.0938646331708;MYOD1:-0.0959605180774;NKX2-3_NKX2-5:-0.106785932258;GATA4:-0.117524356898;IRF7:-0.120226815847;ZNF148:-0.120784295899;ESRRA:-0.125331961702;JUN:-0.12944190725;KLF4:-0.140349178372;RFX2..5_RFXANK_RFXAP:-0.146321257477;IRF1,2:-0.14671046648;XBP1:-0.151435196216;RFX1:-0.156072088281;ETS1,2:-0.170209384271;PAX6:-0.173386817806;RUNX1..3:-0.175469550958;ZNF423:-0.181851039377;NANOG{mouse}:-0.20025209137;MEF2{A,B,C,D}:-0.221623129519;ARID5B:-0.224963854765;NFE2L1:-0.247873175459;ATF5_CREB3:-0.251278684961;TAL1_TCF{3,4,12}:-0.262825168535;CDC5L:-0.263387327157;SPIB:-0.268974876433;RXR{A,B,G}:-0.280373195838;IKZF1:-0.283611636769;GCM1,2:-0.292266841896;TBP:-0.301771744387;POU5F1:-0.304246315634;BREu{core}:-0.313560177649;AIRE:-0.323937335031;T:-0.339719407669;SPI1:-0.346984496244;STAT2,4,6:-0.362551024967;POU6F1:-0.364665354147;FOX{D1,D2}:-0.372817774566;NFKB1_REL_RELA:-0.375648510775;FOXD3:-0.376243361098;ESR1:-0.393560969605;CUX2:-0.400547472525;ATF4:-0.420436067058;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.446057922215;OCT4_SOX2{dimer}:-0.452940216983;PAX2:-0.459879981899;ATF6:-0.466924682616;RREB1:-0.477043763378;PBX1:-0.503253414852;EVI1:-0.51288658755;PAX4:-0.521428309612;REST:-0.527894598282;FOXL1:-0.534437719045;PPARG:-0.534654819732;HIF1A:-0.536577152858;UFEwm:-0.537856446677;ATF2:-0.560451962968;BPTF:-0.570727171055;SOX{8,9,10}:-0.57319538893;TOPORS:-0.58756971929;POU2F1..3:-0.618821339052;SOX2:-0.641440752594;DBP:-0.647211733926;SMAD1..7,9:-0.648497882277;SNAI1..3:-0.651651013803;GLI1..3:-0.682526177938;CDX1,2,4:-0.704273516302;EP300:-0.706995393067;HMX1:-0.716703919881;TLX2:-0.728617850047;ZBTB16:-0.74573861199;ZNF384:-0.764878988178;RORA:-0.810179749275;PAX1,9:-0.816849700733;FOXM1:-0.818580691252;NR5A1,2:-0.840788463307;VSX1,2:-0.86473879184;FOXP3:-0.907160216055;ZEB1:-0.942064177988;RXRA_VDR{dimer}:-0.949248635069;FOXP1:-1.10763465053;PITX1..3:-1.14207976879;LMO2:-1.15188819846;IKZF2:-1.4789611644;NR6A1:-1.52950082534 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11395-118C9;search_select_hide=table117:FF:11395-118C9 | |||
}} | }} | ||
Latest revision as of 17:57, 4 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11907 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11907
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11907
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0706 |
| 10 | 10 | 0.6 |
| 100 | 100 | 0.302 |
| 101 | 101 | 0.677 |
| 102 | 102 | 0.196 |
| 103 | 103 | 0.685 |
| 104 | 104 | 0.438 |
| 105 | 105 | 0.763 |
| 106 | 106 | 0.0217 |
| 107 | 107 | 0.447 |
| 108 | 108 | 0.304 |
| 109 | 109 | 0.894 |
| 11 | 11 | 0.269 |
| 110 | 110 | 0.531 |
| 111 | 111 | 0.326 |
| 112 | 112 | 0.119 |
| 113 | 113 | 0.0103 |
| 114 | 114 | 0.497 |
| 115 | 115 | 0.311 |
| 116 | 116 | 0.288 |
| 117 | 117 | 0.436 |
| 118 | 118 | 0.298 |
| 119 | 119 | 0.0292 |
| 12 | 12 | 0.661 |
| 120 | 120 | 0.683 |
| 121 | 121 | 0.441 |
| 122 | 122 | 0.938 |
| 123 | 123 | 9.76366e-5 |
| 124 | 124 | 0.748 |
| 125 | 125 | 0.33 |
| 126 | 126 | 0.495 |
| 127 | 127 | 0.668 |
| 128 | 128 | 0.295 |
| 129 | 129 | 0.979 |
| 13 | 13 | 0.135 |
| 130 | 130 | 0.01 |
| 131 | 131 | 0.941 |
| 132 | 132 | 0.28 |
| 133 | 133 | 0.86 |
| 134 | 134 | 0.0785 |
| 135 | 135 | 0.296 |
| 136 | 136 | 0.88 |
| 137 | 137 | 0.893 |
| 138 | 138 | 0.387 |
| 139 | 139 | 1.14668e-4 |
| 14 | 14 | 0.267 |
| 140 | 140 | 0.347 |
| 141 | 141 | 0.598 |
| 142 | 142 | 0.914 |
| 143 | 143 | 0.769 |
| 144 | 144 | 0.799 |
| 145 | 145 | 0.958 |
| 146 | 146 | 0.307 |
| 147 | 147 | 0.136 |
| 148 | 148 | 0.786 |
| 149 | 149 | 0.629 |
| 15 | 15 | 0.606 |
| 150 | 150 | 0.61 |
| 151 | 151 | 0.18 |
| 152 | 152 | 0.96 |
| 153 | 153 | 0.66 |
| 154 | 154 | 0.85 |
| 155 | 155 | 0.0279 |
| 156 | 156 | 0.888 |
| 157 | 157 | 0.312 |
| 158 | 158 | 0.0487 |
| 159 | 159 | 0.23 |
| 16 | 16 | 0.505 |
| 160 | 160 | 0.0687 |
| 161 | 161 | 0.5 |
| 162 | 162 | 0.324 |
| 163 | 163 | 0.321 |
| 164 | 164 | 0.143 |
| 165 | 165 | 0.249 |
| 166 | 166 | 0.617 |
| 167 | 167 | 0.345 |
| 168 | 168 | 0.838 |
| 169 | 169 | 0.284 |
| 17 | 17 | 0.335 |
| 18 | 18 | 0.879 |
| 19 | 19 | 0.786 |
| 2 | 2 | 0.641 |
| 20 | 20 | 0.596 |
| 21 | 21 | 0.638 |
| 22 | 22 | 0.866 |
| 23 | 23 | 0.547 |
| 24 | 24 | 0.166 |
| 25 | 25 | 0.287 |
| 26 | 26 | 0.654 |
| 27 | 27 | 0.746 |
| 28 | 28 | 0.695 |
| 29 | 29 | 0.224 |
| 3 | 3 | 0.257 |
| 30 | 30 | 0.313 |
| 31 | 31 | 0.544 |
| 32 | 32 | 0.178 |
| 33 | 33 | 0.863 |
| 34 | 34 | 0.469 |
| 35 | 35 | 0.0249 |
| 36 | 36 | 0.1 |
| 37 | 37 | 0.38 |
| 38 | 38 | 0.651 |
| 39 | 39 | 0.523 |
| 4 | 4 | 0.339 |
| 40 | 40 | 0.0409 |
| 41 | 41 | 0.909 |
| 42 | 42 | 0.98 |
| 43 | 43 | 0.419 |
| 44 | 44 | 0.0167 |
| 45 | 45 | 0.795 |
| 46 | 46 | 0.173 |
| 47 | 47 | 0.111 |
| 48 | 48 | 0.315 |
| 49 | 49 | 0.307 |
| 5 | 5 | 0.585 |
| 50 | 50 | 0.406 |
| 51 | 51 | 0.859 |
| 52 | 52 | 0.714 |
| 53 | 53 | 0.321 |
| 54 | 54 | 0.873 |
| 55 | 55 | 0.309 |
| 56 | 56 | 0.583 |
| 57 | 57 | 0.949 |
| 58 | 58 | 0.116 |
| 59 | 59 | 0.363 |
| 6 | 6 | 0.847 |
| 60 | 60 | 0.0778 |
| 61 | 61 | 0.701 |
| 62 | 62 | 0.0576 |
| 63 | 63 | 0.539 |
| 64 | 64 | 0.129 |
| 65 | 65 | 0.145 |
| 66 | 66 | 0.0276 |
| 67 | 67 | 0.632 |
| 68 | 68 | 0.392 |
| 69 | 69 | 0.546 |
| 7 | 7 | 0.255 |
| 70 | 70 | 0.0109 |
| 71 | 71 | 0.291 |
| 72 | 72 | 0.891 |
| 73 | 73 | 0.72 |
| 74 | 74 | 0.158 |
| 75 | 75 | 0.16 |
| 76 | 76 | 0.643 |
| 77 | 77 | 0.668 |
| 78 | 78 | 0.379 |
| 79 | 79 | 0.325 |
| 8 | 8 | 0.229 |
| 80 | 80 | 0.579 |
| 81 | 81 | 0.196 |
| 82 | 82 | 0.00382 |
| 83 | 83 | 0.986 |
| 84 | 84 | 0.693 |
| 85 | 85 | 0.0155 |
| 86 | 86 | 0.381 |
| 87 | 87 | 0.256 |
| 88 | 88 | 0.854 |
| 89 | 89 | 0.377 |
| 9 | 9 | 0.637 |
| 90 | 90 | 0.599 |
| 91 | 91 | 0.686 |
| 92 | 92 | 0.716 |
| 93 | 93 | 0.942 |
| 94 | 94 | 0.402 |
| 95 | 95 | 0.479 |
| 96 | 96 | 0.58 |
| 97 | 97 | 0.2 |
| 98 | 98 | 0.367 |
| 99 | 99 | 0.0539 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11907
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
