FF:11395-118C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005345 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005345 | |||
|accession_numbers=CAGE;DRX008276;DRR009148;DRZ000573;DRZ001958;DRZ011923;DRZ013308 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037029;DRR041395;DRZ007037 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11395-118C9 | |id=FF:11395-118C9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |||
|library_id=CNhs11907 | |||
|library_id_phase_based=2:CNhs11907 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11395 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTTTCG.11395 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11395 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTTTCG.11395 | |||
|name=Fibroblast - Periodontal Ligament, donor3 | |name=Fibroblast - Periodontal Ligament, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11907,LSID834,release010,COMPLETED | |profile_hcage=CNhs11907,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.255884742944911,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.161961720070343,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.155992340795804,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.323923440140686,0,0,0,-0.0969923612426051,0,0,0.00886907451546257,0,0,0,0,0,0,0,0,0.10621270172856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.05310635086428,0,0,-0.1214303580693,-0.158091051831589,0,0,0,0.10621270172856,0.0081773504908531,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508307439867663,0,0,0,-0.149472516243459,-0.357711706254271,0,0,-0.0418495518922339,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC2635 | |rna_catalog_number=SC2635 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118C9 | |rna_tube_id=118C9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.GTTTCG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.39116541173091e-253!GO:0043226;organelle;7.45291842910554e-200!GO:0043229;intracellular organelle;1.57171222799779e-199!GO:0043231;intracellular membrane-bound organelle;1.2029816165298e-196!GO:0043227;membrane-bound organelle;1.49890658614057e-196!GO:0005737;cytoplasm;1.74918184016238e-183!GO:0044422;organelle part;1.66747035472783e-149!GO:0044446;intracellular organelle part;7.16233676042384e-148!GO:0044444;cytoplasmic part;1.06191368753648e-124!GO:0032991;macromolecular complex;2.14110011168465e-95!GO:0044238;primary metabolic process;1.57016581455099e-92!GO:0044237;cellular metabolic process;2.03851616527657e-90!GO:0005634;nucleus;1.33501664598075e-86!GO:0043170;macromolecule metabolic process;2.05419607038261e-84!GO:0044428;nuclear part;6.74694088660655e-77!GO:0030529;ribonucleoprotein complex;2.4448875966125e-75!GO:0005515;protein binding;2.1729931518028e-74!GO:0043233;organelle lumen;5.34082795313797e-73!GO:0031974;membrane-enclosed lumen;5.34082795313797e-73!GO:0003723;RNA binding;2.47386368654692e-69!GO:0005739;mitochondrion;5.27479413329495e-54!GO:0016043;cellular component organization and biogenesis;1.10587378521758e-53!GO:0031090;organelle membrane;1.02062607694604e-50!GO:0043283;biopolymer metabolic process;4.72165511584513e-50!GO:0043234;protein complex;1.20517956980505e-49!GO:0019538;protein metabolic process;4.20443174090575e-49!GO:0006396;RNA processing;1.53764140128947e-47!GO:0031981;nuclear lumen;2.82364112577909e-46!GO:0015031;protein transport;4.70176161555e-46!GO:0033036;macromolecule localization;7.44843638167133e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.3089778752114e-43!GO:0044260;cellular macromolecule metabolic process;2.66147147599461e-43!GO:0044267;cellular protein metabolic process;7.24701207925306e-43!GO:0005840;ribosome;4.06428707290929e-42!GO:0006412;translation;5.10128149829191e-42!GO:0045184;establishment of protein localization;1.39650032139394e-41!GO:0008104;protein localization;1.50831884065248e-41!GO:0010467;gene expression;1.22228515547113e-40!GO:0016071;mRNA metabolic process;6.80023826256086e-39!GO:0031967;organelle envelope;1.24192332992692e-37!GO:0046907;intracellular transport;1.5939136071784e-37!GO:0031975;envelope;2.12511538118795e-37!GO:0044429;mitochondrial part;2.49347690954475e-37!GO:0009058;biosynthetic process;2.88126231499208e-37!GO:0043228;non-membrane-bound organelle;7.39828594740902e-37!GO:0043232;intracellular non-membrane-bound organelle;7.39828594740902e-37!GO:0003735;structural constituent of ribosome;8.48870855426182e-36!GO:0005829;cytosol;5.57563474927897e-35!GO:0006996;organelle organization and biogenesis;5.9382530572963e-35!GO:0008380;RNA splicing;8.92957644338386e-35!GO:0065003;macromolecular complex assembly;3.74677498373397e-34!GO:0009059;macromolecule biosynthetic process;7.68697262047476e-33!GO:0006397;mRNA processing;1.00658802093708e-32!GO:0044249;cellular biosynthetic process;1.05007969330467e-32!GO:0006259;DNA metabolic process;2.65164583809494e-32!GO:0006886;intracellular protein transport;2.09530723368318e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.09530723368318e-31!GO:0022607;cellular component assembly;1.75245116885882e-30!GO:0033279;ribosomal subunit;6.48890374809506e-30!GO:0005654;nucleoplasm;2.99073392080778e-29!GO:0007049;cell cycle;8.48092429634173e-29!GO:0000166;nucleotide binding;8.12578158737032e-27!GO:0003676;nucleic acid binding;3.14210881019695e-26!GO:0051641;cellular localization;2.10655904521914e-25!GO:0051649;establishment of cellular localization;2.9734747653463e-25!GO:0012505;endomembrane system;4.30574618636314e-24!GO:0005681;spliceosome;4.58882156000319e-24!GO:0044451;nucleoplasm part;9.78999383092332e-24!GO:0005740;mitochondrial envelope;2.08526596830994e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.78965665288024e-23!GO:0016462;pyrophosphatase activity;1.5656664315911e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.01610989390812e-22!GO:0017111;nucleoside-triphosphatase activity;2.88293472393801e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.37019947423393e-22!GO:0000278;mitotic cell cycle;4.54904163127474e-22!GO:0031966;mitochondrial membrane;5.65689564735201e-22!GO:0022402;cell cycle process;3.15799649880355e-21!GO:0019866;organelle inner membrane;1.1426878913457e-20!GO:0006457;protein folding;1.57673672871665e-20!GO:0016874;ligase activity;2.28557330586607e-19!GO:0017076;purine nucleotide binding;2.78774968578132e-19!GO:0044445;cytosolic part;2.95651744818341e-19!GO:0006974;response to DNA damage stimulus;3.39407482565875e-19!GO:0006512;ubiquitin cycle;4.09112154976265e-19!GO:0005783;endoplasmic reticulum;5.27983209690155e-19!GO:0016070;RNA metabolic process;5.27983209690155e-19!GO:0005743;mitochondrial inner membrane;6.05983577121586e-19!GO:0048770;pigment granule;7.22965929901889e-19!GO:0042470;melanosome;7.22965929901889e-19!GO:0032553;ribonucleotide binding;7.60514339705677e-19!GO:0032555;purine ribonucleotide binding;7.60514339705677e-19!GO:0022618;protein-RNA complex assembly;8.7118948542777e-19!GO:0005730;nucleolus;3.38272917350495e-18!GO:0000087;M phase of mitotic cell cycle;3.77671852581226e-18!GO:0007067;mitosis;1.02414913596082e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.24052313914174e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.97638304033194e-17!GO:0005794;Golgi apparatus;2.31147375156509e-17!GO:0043285;biopolymer catabolic process;2.53191136167736e-17!GO:0019941;modification-dependent protein catabolic process;2.56211874101836e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.56211874101836e-17!GO:0044265;cellular macromolecule catabolic process;3.39502216788057e-17!GO:0044257;cellular protein catabolic process;3.95758871270524e-17!GO:0006119;oxidative phosphorylation;5.00139637019714e-17!GO:0031980;mitochondrial lumen;8.31441365830008e-17!GO:0005759;mitochondrial matrix;8.31441365830008e-17!GO:0005694;chromosome;8.46457381029679e-17!GO:0051301;cell division;8.63759609610458e-17!GO:0005524;ATP binding;1.04043571393475e-16!GO:0030554;adenyl nucleotide binding;1.4699099339234e-16!GO:0008135;translation factor activity, nucleic acid binding;1.79430008795774e-16!GO:0032559;adenyl ribonucleotide binding;2.88084094615768e-16!GO:0044432;endoplasmic reticulum part;2.94073608708433e-16!GO:0022403;cell cycle phase;3.29859803847321e-16!GO:0006281;DNA repair;4.5359575157589e-16!GO:0015935;small ribosomal subunit;1.03914934449671e-15!GO:0048193;Golgi vesicle transport;2.12110176509168e-15!GO:0009057;macromolecule catabolic process;2.25605046633757e-15!GO:0008134;transcription factor binding;2.75246366912708e-15!GO:0006605;protein targeting;2.97738424981357e-15!GO:0030163;protein catabolic process;3.24049907341968e-15!GO:0016192;vesicle-mediated transport;3.46807120488283e-15!GO:0005635;nuclear envelope;3.51562064680779e-15!GO:0015934;large ribosomal subunit;5.99333985767543e-15!GO:0043412;biopolymer modification;9.69558971245134e-15!GO:0031965;nuclear membrane;1.52045786530888e-14!GO:0044427;chromosomal part;1.58012389807059e-14!GO:0044248;cellular catabolic process;1.89365034227613e-14!GO:0051186;cofactor metabolic process;2.30148262202613e-14!GO:0009719;response to endogenous stimulus;2.4412544951306e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.86278562975412e-14!GO:0051276;chromosome organization and biogenesis;5.34999752287443e-14!GO:0000279;M phase;6.90183972609597e-14!GO:0044453;nuclear membrane part;6.95201331426318e-14!GO:0044455;mitochondrial membrane part;8.98961450432242e-14!GO:0003743;translation initiation factor activity;1.90343628966132e-13!GO:0042254;ribosome biogenesis and assembly;3.70382267767687e-13!GO:0006464;protein modification process;9.68621948116784e-13!GO:0016604;nuclear body;9.770233452935e-13!GO:0006413;translational initiation;1.01055934618679e-12!GO:0051082;unfolded protein binding;1.08387633269743e-12!GO:0006260;DNA replication;1.19891182646928e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.32420439921543e-12!GO:0000375;RNA splicing, via transesterification reactions;1.32420439921543e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.32420439921543e-12!GO:0042623;ATPase activity, coupled;3.57791017475179e-12!GO:0016887;ATPase activity;3.79448364903534e-12!GO:0005793;ER-Golgi intermediate compartment;4.60889890940559e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.07042441587701e-12!GO:0006913;nucleocytoplasmic transport;6.22991019481045e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.95475246357188e-12!GO:0004386;helicase activity;9.61468619447788e-12!GO:0051169;nuclear transport;1.46890463275245e-11!GO:0005761;mitochondrial ribosome;1.76553685086035e-11!GO:0000313;organellar ribosome;1.76553685086035e-11!GO:0005746;mitochondrial respiratory chain;1.77173426739189e-11!GO:0008639;small protein conjugating enzyme activity;1.77350283393463e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.99374850144357e-11!GO:0051726;regulation of cell cycle;2.42672875488196e-11!GO:0005789;endoplasmic reticulum membrane;2.44252341949145e-11!GO:0000074;regulation of progression through cell cycle;2.59028981255273e-11!GO:0043687;post-translational protein modification;2.95885224103639e-11!GO:0005643;nuclear pore;3.08891987649994e-11!GO:0004842;ubiquitin-protein ligase activity;3.73080564649946e-11!GO:0015630;microtubule cytoskeleton;3.73131073467868e-11!GO:0006732;coenzyme metabolic process;4.19307437602162e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.23660643966983e-11!GO:0006446;regulation of translational initiation;5.3556298289877e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;5.71652164464152e-11!GO:0019787;small conjugating protein ligase activity;7.17614598852836e-11!GO:0006461;protein complex assembly;1.1764565191003e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.26213284139549e-10!GO:0006323;DNA packaging;1.79622000828981e-10!GO:0006403;RNA localization;2.30666968188544e-10!GO:0050657;nucleic acid transport;2.36344543848961e-10!GO:0051236;establishment of RNA localization;2.36344543848961e-10!GO:0050658;RNA transport;2.36344543848961e-10!GO:0003712;transcription cofactor activity;2.455196520359e-10!GO:0008565;protein transporter activity;3.19269361476569e-10!GO:0016607;nuclear speck;3.62559374172308e-10!GO:0050136;NADH dehydrogenase (quinone) activity;5.25733752597638e-10!GO:0003954;NADH dehydrogenase activity;5.25733752597638e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.25733752597638e-10!GO:0009259;ribonucleotide metabolic process;6.26933506750233e-10!GO:0050794;regulation of cellular process;6.37273199083681e-10!GO:0046930;pore complex;6.54596590892679e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.36392032487631e-10!GO:0008026;ATP-dependent helicase activity;7.73266255619756e-10!GO:0006163;purine nucleotide metabolic process;1.0702165441231e-09!GO:0006366;transcription from RNA polymerase II promoter;1.76611976872164e-09!GO:0016881;acid-amino acid ligase activity;1.78152681944101e-09!GO:0012501;programmed cell death;1.9556799259905e-09!GO:0042775;organelle ATP synthesis coupled electron transport;2.70112884027971e-09!GO:0042773;ATP synthesis coupled electron transport;2.70112884027971e-09!GO:0006888;ER to Golgi vesicle-mediated transport;2.87144061877011e-09!GO:0006915;apoptosis;2.92156048100873e-09!GO:0006399;tRNA metabolic process;2.94752504184959e-09!GO:0065002;intracellular protein transport across a membrane;3.53835944531291e-09!GO:0009150;purine ribonucleotide metabolic process;4.22005452879827e-09!GO:0006164;purine nucleotide biosynthetic process;9.34936177774858e-09!GO:0005768;endosome;9.38798913948037e-09!GO:0043566;structure-specific DNA binding;1.02810473557762e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.04118881103709e-08!GO:0045271;respiratory chain complex I;1.04118881103709e-08!GO:0005747;mitochondrial respiratory chain complex I;1.04118881103709e-08!GO:0009056;catabolic process;1.19787146265238e-08!GO:0051028;mRNA transport;1.20350949065853e-08!GO:0065004;protein-DNA complex assembly;1.22090267223357e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.31050834915947e-08!GO:0017038;protein import;1.43848086127639e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.44839562383062e-08!GO:0009260;ribonucleotide biosynthetic process;1.48958097349714e-08!GO:0008219;cell death;1.67015179194844e-08!GO:0016265;death;1.67015179194844e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.67015179194844e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.67015179194844e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.67015179194844e-08!GO:0044431;Golgi apparatus part;1.79163047568388e-08!GO:0030120;vesicle coat;1.79549940342261e-08!GO:0030662;coated vesicle membrane;1.79549940342261e-08!GO:0043038;amino acid activation;1.94562587751367e-08!GO:0006418;tRNA aminoacylation for protein translation;1.94562587751367e-08!GO:0043039;tRNA aminoacylation;1.94562587751367e-08!GO:0005813;centrosome;1.9693391306835e-08!GO:0006333;chromatin assembly or disassembly;2.37506476932108e-08!GO:0005819;spindle;2.76493151571366e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.93772836888305e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.06040132628296e-08!GO:0006364;rRNA processing;3.16477840864132e-08!GO:0009141;nucleoside triphosphate metabolic process;3.33474912900042e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.37786219599175e-08!GO:0048523;negative regulation of cellular process;4.60788160109183e-08!GO:0009055;electron carrier activity;5.03639076394885e-08!GO:0048475;coated membrane;5.3294102717364e-08!GO:0030117;membrane coat;5.3294102717364e-08!GO:0009060;aerobic respiration;5.5628890328696e-08!GO:0003697;single-stranded DNA binding;5.63413034363569e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.63413034363569e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.63413034363569e-08!GO:0000785;chromatin;5.96370253007712e-08!GO:0005815;microtubule organizing center;5.96370253007712e-08!GO:0016072;rRNA metabolic process;6.24635538066455e-08!GO:0045333;cellular respiration;6.63553244901778e-08!GO:0003924;GTPase activity;1.16944174721486e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.25939506647077e-07!GO:0051246;regulation of protein metabolic process;1.40797015990575e-07!GO:0000151;ubiquitin ligase complex;1.42465167514948e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.74213827126345e-07!GO:0051188;cofactor biosynthetic process;2.10309578123987e-07!GO:0032446;protein modification by small protein conjugation;2.21926157333833e-07!GO:0046034;ATP metabolic process;2.28429005301293e-07!GO:0019829;cation-transporting ATPase activity;3.11538121398291e-07!GO:0016567;protein ubiquitination;3.30612295411894e-07!GO:0015986;ATP synthesis coupled proton transport;3.57509994903859e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.57509994903859e-07!GO:0016740;transferase activity;5.17308483056519e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.2842412301634e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.2842412301634e-07!GO:0005788;endoplasmic reticulum lumen;5.31543425596773e-07!GO:0016779;nucleotidyltransferase activity;6.11782189001398e-07!GO:0044440;endosomal part;6.24833890283018e-07!GO:0010008;endosome membrane;6.24833890283018e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.85400399775429e-07!GO:0050789;regulation of biological process;7.14842457853401e-07!GO:0031252;leading edge;7.57949648214926e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.73111362861421e-07!GO:0006099;tricarboxylic acid cycle;9.43068646796022e-07!GO:0046356;acetyl-CoA catabolic process;9.43068646796022e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.75363225279582e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.75363225279582e-07!GO:0051170;nuclear import;9.78808413870578e-07!GO:0016568;chromatin modification;1.01146528746257e-06!GO:0007051;spindle organization and biogenesis;1.0149257138242e-06!GO:0005798;Golgi-associated vesicle;1.18875282204885e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.35426736170043e-06!GO:0003713;transcription coactivator activity;1.39646684234908e-06!GO:0000775;chromosome, pericentric region;1.44055739808056e-06!GO:0048519;negative regulation of biological process;1.51380523572703e-06!GO:0009109;coenzyme catabolic process;1.86505090110426e-06!GO:0006084;acetyl-CoA metabolic process;1.93120491254769e-06!GO:0006606;protein import into nucleus;1.98002544327534e-06!GO:0005667;transcription factor complex;2.28742529353128e-06!GO:0051187;cofactor catabolic process;2.40656310859351e-06!GO:0000139;Golgi membrane;2.45235308179047e-06!GO:0031988;membrane-bound vesicle;2.66514482506808e-06!GO:0006613;cotranslational protein targeting to membrane;2.68778209832162e-06!GO:0000075;cell cycle checkpoint;2.81854048980271e-06!GO:0006916;anti-apoptosis;2.93392170934755e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.93392170934755e-06!GO:0016787;hydrolase activity;3.42309168642703e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.65880733979182e-06!GO:0006754;ATP biosynthetic process;3.71019720547588e-06!GO:0006753;nucleoside phosphate metabolic process;3.71019720547588e-06!GO:0000245;spliceosome assembly;3.90204898506705e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.02627355805863e-06!GO:0007010;cytoskeleton organization and biogenesis;4.34919855230163e-06!GO:0006334;nucleosome assembly;4.60785693419092e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.22530800539005e-06!GO:0051329;interphase of mitotic cell cycle;7.46224948020438e-06!GO:0016859;cis-trans isomerase activity;7.6783626227244e-06!GO:0008654;phospholipid biosynthetic process;7.99276644110187e-06!GO:0016563;transcription activator activity;7.99722800006815e-06!GO:0009108;coenzyme biosynthetic process;8.03849407974613e-06!GO:0043069;negative regulation of programmed cell death;8.09491165478067e-06!GO:0031982;vesicle;9.46126931371374e-06!GO:0043066;negative regulation of apoptosis;9.52689040215708e-06!GO:0007005;mitochondrion organization and biogenesis;9.5291511530811e-06!GO:0043623;cellular protein complex assembly;9.53418894454575e-06!GO:0009117;nucleotide metabolic process;9.59833268929142e-06!GO:0005769;early endosome;1.07519344930748e-05!GO:0016853;isomerase activity;1.11919509858752e-05!GO:0016491;oxidoreductase activity;1.13271714058967e-05!GO:0019899;enzyme binding;1.16468127890064e-05!GO:0003724;RNA helicase activity;1.22061298283932e-05!GO:0006261;DNA-dependent DNA replication;1.26721070651866e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.38096301973871e-05!GO:0006793;phosphorus metabolic process;1.40668086978468e-05!GO:0006796;phosphate metabolic process;1.40668086978468e-05!GO:0031410;cytoplasmic vesicle;1.47501228758623e-05!GO:0019222;regulation of metabolic process;1.58180569258872e-05!GO:0031497;chromatin assembly;1.73795294324308e-05!GO:0031324;negative regulation of cellular metabolic process;1.80278700973407e-05!GO:0042981;regulation of apoptosis;1.85735192959696e-05!GO:0006752;group transfer coenzyme metabolic process;1.98979697869606e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.11796169551502e-05!GO:0045259;proton-transporting ATP synthase complex;2.1994428536495e-05!GO:0051325;interphase;2.22722192436159e-05!GO:0005525;GTP binding;2.29279347554842e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.3308335821551e-05!GO:0043067;regulation of programmed cell death;2.42477720199805e-05!GO:0016126;sterol biosynthetic process;2.48765684377222e-05!GO:0051427;hormone receptor binding;2.81236393832965e-05!GO:0045786;negative regulation of progression through cell cycle;2.94220975089944e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.3998646985216e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.76022431496505e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.15535617863294e-05!GO:0030133;transport vesicle;4.87060130656504e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.91392777023416e-05!GO:0031968;organelle outer membrane;5.42046657881663e-05!GO:0019867;outer membrane;5.62060467135477e-05!GO:0009892;negative regulation of metabolic process;5.79579514434471e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.08896802241841e-05!GO:0035257;nuclear hormone receptor binding;6.09692301470885e-05!GO:0030867;rough endoplasmic reticulum membrane;6.2629135068802e-05!GO:0006091;generation of precursor metabolites and energy;7.4281751242385e-05!GO:0000776;kinetochore;7.76377258439017e-05!GO:0051252;regulation of RNA metabolic process;8.19545110872321e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.19779412182809e-05!GO:0051168;nuclear export;8.3464134054145e-05!GO:0003682;chromatin binding;9.9742650528978e-05!GO:0006612;protein targeting to membrane;0.000101013855701557!GO:0016310;phosphorylation;0.000105040340136313!GO:0000059;protein import into nucleus, docking;0.000111472203297369!GO:0003899;DNA-directed RNA polymerase activity;0.000113242530992045!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000114005921064713!GO:0003690;double-stranded DNA binding;0.000122117014732356!GO:0005773;vacuole;0.000132407507837452!GO:0005657;replication fork;0.000133863942306036!GO:0043021;ribonucleoprotein binding;0.000138699143897774!GO:0008094;DNA-dependent ATPase activity;0.000149162354001605!GO:0005770;late endosome;0.000149625870315271!GO:0005905;coated pit;0.000154647989546419!GO:0051052;regulation of DNA metabolic process;0.000162952720476185!GO:0051789;response to protein stimulus;0.000166273156084686!GO:0006986;response to unfolded protein;0.000166273156084686!GO:0005048;signal sequence binding;0.000186132117598917!GO:0032561;guanyl ribonucleotide binding;0.000193419436179493!GO:0019001;guanyl nucleotide binding;0.000193419436179493!GO:0008092;cytoskeletal protein binding;0.000211346893571198!GO:0006302;double-strand break repair;0.000212939464738507!GO:0006695;cholesterol biosynthetic process;0.000223621413755854!GO:0007052;mitotic spindle organization and biogenesis;0.000232520346060716!GO:0005791;rough endoplasmic reticulum;0.000235157074940717!GO:0045454;cell redox homeostasis;0.000250103455313808!GO:0016363;nuclear matrix;0.000254071598913055!GO:0030029;actin filament-based process;0.000261655384396562!GO:0016481;negative regulation of transcription;0.000272888101877907!GO:0006402;mRNA catabolic process;0.00028772337140173!GO:0016564;transcription repressor activity;0.000306010497002407!GO:0004298;threonine endopeptidase activity;0.000322989853399043!GO:0006950;response to stress;0.000330387261136438!GO:0000323;lytic vacuole;0.000342901385004504!GO:0005764;lysosome;0.000342901385004504!GO:0065007;biological regulation;0.00035341644528691!GO:0030663;COPI coated vesicle membrane;0.000364326260182571!GO:0030126;COPI vesicle coat;0.000364326260182571!GO:0005885;Arp2/3 protein complex;0.000366336612730866!GO:0007088;regulation of mitosis;0.000377056297411586!GO:0042802;identical protein binding;0.000377866582961249!GO:0005874;microtubule;0.000395932363363394!GO:0007059;chromosome segregation;0.000439708498831198!GO:0003729;mRNA binding;0.000467381544843205!GO:0003714;transcription corepressor activity;0.000482457039811614!GO:0005741;mitochondrial outer membrane;0.000492940497651008!GO:0008047;enzyme activator activity;0.00049548897414031!GO:0046474;glycerophospholipid biosynthetic process;0.000514693629998508!GO:0031072;heat shock protein binding;0.000543073296989006!GO:0045045;secretory pathway;0.00054330011877784!GO:0008610;lipid biosynthetic process;0.000546001356135194!GO:0008186;RNA-dependent ATPase activity;0.00055257732948402!GO:0007243;protein kinase cascade;0.000573359025673153!GO:0008250;oligosaccharyl transferase complex;0.000574166917411126!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00059593135270064!GO:0016044;membrane organization and biogenesis;0.000628754696275609!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000635587938175137!GO:0033116;ER-Golgi intermediate compartment membrane;0.000639715436492118!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000648899758293746!GO:0006310;DNA recombination;0.000651508676503083!GO:0048471;perinuclear region of cytoplasm;0.00066526456134408!GO:0030134;ER to Golgi transport vesicle;0.000683154988116435!GO:0005096;GTPase activator activity;0.000705435670133719!GO:0005762;mitochondrial large ribosomal subunit;0.000739138907624236!GO:0000315;organellar large ribosomal subunit;0.000739138907624236!GO:0006383;transcription from RNA polymerase III promoter;0.000770380963756209!GO:0048522;positive regulation of cellular process;0.000821340107445439!GO:0030521;androgen receptor signaling pathway;0.000856236785187488!GO:0007093;mitotic cell cycle checkpoint;0.000858984733805213!GO:0004576;oligosaccharyl transferase activity;0.000893175356039217!GO:0006891;intra-Golgi vesicle-mediated transport;0.000920319867865978!GO:0030027;lamellipodium;0.000956695565466184!GO:0048500;signal recognition particle;0.000999708955356341!GO:0046467;membrane lipid biosynthetic process;0.00100366928073114!GO:0030137;COPI-coated vesicle;0.00101222060113018!GO:0030127;COPII vesicle coat;0.00101363496903147!GO:0012507;ER to Golgi transport vesicle membrane;0.00101363496903147!GO:0031901;early endosome membrane;0.00105522540502123!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0010893743074536!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111145724242!GO:0019843;rRNA binding;0.00114768899659983!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00127886457180756!GO:0044452;nucleolar part;0.00129277831019428!GO:0000082;G1/S transition of mitotic cell cycle;0.00131512237295907!GO:0003678;DNA helicase activity;0.00135227235356734!GO:0009165;nucleotide biosynthetic process;0.0013696337961675!GO:0065009;regulation of a molecular function;0.0013696337961675!GO:0008361;regulation of cell size;0.00141397552730641!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00142960432652795!GO:0050662;coenzyme binding;0.00146505945282838!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0014834992102137!GO:0001726;ruffle;0.00149358937907737!GO:0004004;ATP-dependent RNA helicase activity;0.00149728664374792!GO:0035258;steroid hormone receptor binding;0.00151160451897198!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00166658170985955!GO:0006401;RNA catabolic process;0.00168810931178293!GO:0043488;regulation of mRNA stability;0.00180975685230759!GO:0043487;regulation of RNA stability;0.00180975685230759!GO:0030880;RNA polymerase complex;0.00184114348515688!GO:0031323;regulation of cellular metabolic process;0.00186218210094018!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00188802743576989!GO:0045047;protein targeting to ER;0.00188802743576989!GO:0030658;transport vesicle membrane;0.00193731033956784!GO:0016049;cell growth;0.00193731033956784!GO:0008312;7S RNA binding;0.00193767152299401!GO:0030132;clathrin coat of coated pit;0.00202867734657938!GO:0003684;damaged DNA binding;0.00202867734657938!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00212906009144265!GO:0000314;organellar small ribosomal subunit;0.00213621754889578!GO:0005763;mitochondrial small ribosomal subunit;0.00213621754889578!GO:0032984;macromolecular complex disassembly;0.00221489538572701!GO:0046489;phosphoinositide biosynthetic process;0.00225301826979505!GO:0004674;protein serine/threonine kinase activity;0.0022635858574946!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00227799259928092!GO:0018196;peptidyl-asparagine modification;0.00227799259928092!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00227799259928092!GO:0051920;peroxiredoxin activity;0.00269139679476879!GO:0003711;transcription elongation regulator activity;0.00285297375120771!GO:0006352;transcription initiation;0.00299187783097934!GO:0008180;signalosome;0.0030437056866995!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00306087205627349!GO:0000910;cytokinesis;0.00331021738721911!GO:0015992;proton transport;0.00331579839026586!GO:0045893;positive regulation of transcription, DNA-dependent;0.00337772895098452!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00337772895098452!GO:0000428;DNA-directed RNA polymerase complex;0.00337772895098452!GO:0016251;general RNA polymerase II transcription factor activity;0.00345523686336837!GO:0007050;cell cycle arrest;0.00354370781850749!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00355156849373584!GO:0008168;methyltransferase activity;0.00355752218531778!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00365749612129367!GO:0015399;primary active transmembrane transporter activity;0.00365749612129367!GO:0016741;transferase activity, transferring one-carbon groups;0.00369481348714997!GO:0005876;spindle microtubule;0.00380782014939688!GO:0006818;hydrogen transport;0.0038424467112639!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00386121427965919!GO:0030118;clathrin coat;0.00389719161836162!GO:0051128;regulation of cellular component organization and biogenesis;0.00397625290785443!GO:0017166;vinculin binding;0.00400609797204604!GO:0015631;tubulin binding;0.00403115770794858!GO:0007017;microtubule-based process;0.00414843151052141!GO:0006289;nucleotide-excision repair;0.00418554307075621!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00425491662846488!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00425491662846488!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00425491662846488!GO:0050681;androgen receptor binding;0.00432179934226423!GO:0043681;protein import into mitochondrion;0.00434259741157732!GO:0043241;protein complex disassembly;0.00478376305922444!GO:0005100;Rho GTPase activator activity;0.00485226167845164!GO:0006275;regulation of DNA replication;0.00493916008213198!GO:0008139;nuclear localization sequence binding;0.00507984224336194!GO:0004527;exonuclease activity;0.0051211853181629!GO:0000922;spindle pole;0.00512531797097755!GO:0045941;positive regulation of transcription;0.00516835223161057!GO:0006414;translational elongation;0.00533297406187131!GO:0030660;Golgi-associated vesicle membrane;0.00533297406187131!GO:0001558;regulation of cell growth;0.0055906213859049!GO:0006350;transcription;0.0055906213859049!GO:0033673;negative regulation of kinase activity;0.00561090109627777!GO:0006469;negative regulation of protein kinase activity;0.00561090109627777!GO:0006405;RNA export from nucleus;0.00614710485701449!GO:0004177;aminopeptidase activity;0.00615357775441149!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00625893816791886!GO:0006650;glycerophospholipid metabolic process;0.00644568790478582!GO:0000049;tRNA binding;0.00647239012107222!GO:0051287;NAD binding;0.0065260286365815!GO:0016197;endosome transport;0.00662028624351386!GO:0006839;mitochondrial transport;0.00672340821747048!GO:0043624;cellular protein complex disassembly;0.00681157994833658!GO:0048037;cofactor binding;0.00706780579139574!GO:0032508;DNA duplex unwinding;0.00712394617311671!GO:0032392;DNA geometric change;0.00712394617311671!GO:0031124;mRNA 3'-end processing;0.00721685215651045!GO:0006626;protein targeting to mitochondrion;0.0074551366119506!GO:0006595;polyamine metabolic process;0.00755938064872173!GO:0030518;steroid hormone receptor signaling pathway;0.00760866867361072!GO:0006611;protein export from nucleus;0.00767786562744456!GO:0000339;RNA cap binding;0.0076887566221363!GO:0051348;negative regulation of transferase activity;0.00772904245165728!GO:0008234;cysteine-type peptidase activity;0.00792538187069526!GO:0000786;nucleosome;0.00835684925086384!GO:0006607;NLS-bearing substrate import into nucleus;0.00841840870904482!GO:0009967;positive regulation of signal transduction;0.00855626280130255!GO:0046483;heterocycle metabolic process;0.0086321364972632!GO:0019752;carboxylic acid metabolic process;0.00884914461125684!GO:0006497;protein amino acid lipidation;0.00884914461125684!GO:0006892;post-Golgi vesicle-mediated transport;0.00893548199083666!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00897937344217439!GO:0047485;protein N-terminus binding;0.00908371039286574!GO:0007006;mitochondrial membrane organization and biogenesis;0.00913348035262574!GO:0051540;metal cluster binding;0.00923007424244401!GO:0051536;iron-sulfur cluster binding;0.00923007424244401!GO:0043284;biopolymer biosynthetic process;0.00932056741834508!GO:0008033;tRNA processing;0.0097895424714834!GO:0030119;AP-type membrane coat adaptor complex;0.00989672866493861!GO:0006082;organic acid metabolic process;0.0100960790792104!GO:0005669;transcription factor TFIID complex;0.0101327974164428!GO:0008154;actin polymerization and/or depolymerization;0.0101937188324209!GO:0005869;dynactin complex;0.0102572870669778!GO:0031625;ubiquitin protein ligase binding;0.0103524027723393!GO:0048487;beta-tubulin binding;0.0103808694403037!GO:0050790;regulation of catalytic activity;0.0105157260929257!GO:0006268;DNA unwinding during replication;0.0106579035367591!GO:0005637;nuclear inner membrane;0.0108524050915647!GO:0045892;negative regulation of transcription, DNA-dependent;0.0110700320121627!GO:0022415;viral reproductive process;0.0113496528509829!GO:0008022;protein C-terminus binding;0.0113496528509829!GO:0000209;protein polyubiquitination;0.011484014433491!GO:0030659;cytoplasmic vesicle membrane;0.0118354883886315!GO:0005832;chaperonin-containing T-complex;0.0119952045661741!GO:0005684;U2-dependent spliceosome;0.0125666045834759!GO:0016584;nucleosome positioning;0.0129085688585352!GO:0043492;ATPase activity, coupled to movement of substances;0.0129414467321628!GO:0030176;integral to endoplasmic reticulum membrane;0.0136453261371365!GO:0016408;C-acyltransferase activity;0.0139344762845439!GO:0030041;actin filament polymerization;0.0140060999998066!GO:0022890;inorganic cation transmembrane transporter activity;0.0142338259975125!GO:0005862;muscle thin filament tropomyosin;0.0142338259975125!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0142471679823531!GO:0051087;chaperone binding;0.0149910327872938!GO:0007264;small GTPase mediated signal transduction;0.0150680831353072!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0152394540590813!GO:0022411;cellular component disassembly;0.0152394540590813!GO:0010468;regulation of gene expression;0.0152862699983475!GO:0030131;clathrin adaptor complex;0.0163307664933825!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163307664933825!GO:0032200;telomere organization and biogenesis;0.0163897266517652!GO:0000723;telomere maintenance;0.0163897266517652!GO:0007034;vacuolar transport;0.0166079554794252!GO:0030384;phosphoinositide metabolic process;0.0166373562289063!GO:0044433;cytoplasmic vesicle part;0.0168618251471782!GO:0009112;nucleobase metabolic process;0.0169172204817108!GO:0033559;unsaturated fatty acid metabolic process;0.016931437417143!GO:0006636;unsaturated fatty acid biosynthetic process;0.016931437417143!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.016997084918403!GO:0031529;ruffle organization and biogenesis;0.016997084918403!GO:0006897;endocytosis;0.0171451368335917!GO:0010324;membrane invagination;0.0171451368335917!GO:0003746;translation elongation factor activity;0.0172371426509982!GO:0022406;membrane docking;0.0173783783655264!GO:0048278;vesicle docking;0.0173783783655264!GO:0006354;RNA elongation;0.0174832808446858!GO:0051539;4 iron, 4 sulfur cluster binding;0.0176628143605654!GO:0031570;DNA integrity checkpoint;0.0178941963252603!GO:0004003;ATP-dependent DNA helicase activity;0.0179365766920183!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0179365766920183!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0179365766920183!GO:0006979;response to oxidative stress;0.0179632770644842!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0182993705319933!GO:0019783;small conjugating protein-specific protease activity;0.0184712934216031!GO:0006984;ER-nuclear signaling pathway;0.0186066565974946!GO:0043022;ribosome binding;0.0186146921277641!GO:0012506;vesicle membrane;0.0186741067890124!GO:0006144;purine base metabolic process;0.0190262725357829!GO:0031123;RNA 3'-end processing;0.0190319475808653!GO:0006376;mRNA splice site selection;0.0190319475808653!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0190319475808653!GO:0004843;ubiquitin-specific protease activity;0.0191299920585467!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.019205327803047!GO:0042158;lipoprotein biosynthetic process;0.0193139040033142!GO:0032940;secretion by cell;0.0194933746852837!GO:0022408;negative regulation of cell-cell adhesion;0.0195925652115878!GO:0001952;regulation of cell-matrix adhesion;0.0195990855537837!GO:0005099;Ras GTPase activator activity;0.0201421716325718!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0201781214537534!GO:0016125;sterol metabolic process;0.0201793177736978!GO:0043130;ubiquitin binding;0.0206690259161902!GO:0032182;small conjugating protein binding;0.0206690259161902!GO:0008632;apoptotic program;0.0212192742790204!GO:0042393;histone binding;0.0214380323524882!GO:0000152;nuclear ubiquitin ligase complex;0.0219798502132892!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0219868955157103!GO:0006338;chromatin remodeling;0.0224250051878961!GO:0003779;actin binding;0.0228708443874443!GO:0005801;cis-Golgi network;0.0231325574123632!GO:0030032;lamellipodium biogenesis;0.0235657293780034!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0237513352032152!GO:0033043;regulation of organelle organization and biogenesis;0.0237513352032152!GO:0000781;chromosome, telomeric region;0.0237513352032152!GO:0016407;acetyltransferase activity;0.0238738716635872!GO:0042770;DNA damage response, signal transduction;0.0240361330930929!GO:0004221;ubiquitin thiolesterase activity;0.0244546452861672!GO:0008286;insulin receptor signaling pathway;0.0245815889231782!GO:0048518;positive regulation of biological process;0.0248562089652147!GO:0035035;histone acetyltransferase binding;0.024907349932781!GO:0005875;microtubule associated complex;0.0251267800795702!GO:0030125;clathrin vesicle coat;0.0257169014944189!GO:0030665;clathrin coated vesicle membrane;0.0257169014944189!GO:0007030;Golgi organization and biogenesis;0.0257715857203888!GO:0042026;protein refolding;0.0258232802446878!GO:0044262;cellular carbohydrate metabolic process;0.0272408896848779!GO:0006378;mRNA polyadenylation;0.0275523587480367!GO:0030522;intracellular receptor-mediated signaling pathway;0.0276867863978947!GO:0048144;fibroblast proliferation;0.0282663675245225!GO:0048145;regulation of fibroblast proliferation;0.0282663675245225!GO:0016790;thiolester hydrolase activity;0.0287352710033546!GO:0000819;sister chromatid segregation;0.0293549154384437!GO:0006904;vesicle docking during exocytosis;0.0293871292151269!GO:0006506;GPI anchor biosynthetic process;0.029861777213659!GO:0019206;nucleoside kinase activity;0.029861777213659!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0314581429902064!GO:0048146;positive regulation of fibroblast proliferation;0.0314581429902064!GO:0000077;DNA damage checkpoint;0.0325772016439466!GO:0006778;porphyrin metabolic process;0.0327810740948192!GO:0033013;tetrapyrrole metabolic process;0.0327810740948192!GO:0008299;isoprenoid biosynthetic process;0.033202953401788!GO:0000792;heterochromatin;0.0339789206243876!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0340051185607738!GO:0031577;spindle checkpoint;0.034416263221995!GO:0004722;protein serine/threonine phosphatase activity;0.0344175890723484!GO:0031371;ubiquitin conjugating enzyme complex;0.0344882857389401!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0345876433812021!GO:0031902;late endosome membrane;0.0362206422775759!GO:0006509;membrane protein ectodomain proteolysis;0.0363031304763529!GO:0033619;membrane protein proteolysis;0.0363031304763529!GO:0000725;recombinational repair;0.0363818017373728!GO:0000724;double-strand break repair via homologous recombination;0.0363818017373728!GO:0006284;base-excision repair;0.0368825468775224!GO:0005856;cytoskeleton;0.0372035993727424!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0373075611771536!GO:0015002;heme-copper terminal oxidase activity;0.0373075611771536!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0373075611771536!GO:0004129;cytochrome-c oxidase activity;0.0373075611771536!GO:0006505;GPI anchor metabolic process;0.0373894242383927!GO:0043596;nuclear replication fork;0.0375679086780686!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0381045740823464!GO:0045334;clathrin-coated endocytic vesicle;0.0381796174605765!GO:0000070;mitotic sister chromatid segregation;0.0382158388217301!GO:0007021;tubulin folding;0.039074024112065!GO:0051053;negative regulation of DNA metabolic process;0.039096524219403!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0393133648789757!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0393133648789757!GO:0005774;vacuolar membrane;0.0394648797874689!GO:0009225;nucleotide-sugar metabolic process;0.0402793580971606!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0406078422828766!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0406078422828766!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0412983478528912!GO:0007004;telomere maintenance via telomerase;0.041425180110372!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0418067104055526!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0418531402702427!GO:0009451;RNA modification;0.0418858738806328!GO:0000726;non-recombinational repair;0.0419777690195823!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0419811121939952!GO:0031461;cullin-RING ubiquitin ligase complex;0.0422924467565434!GO:0001953;negative regulation of cell-matrix adhesion;0.0425031169153946!GO:0008097;5S rRNA binding;0.0426236211725833!GO:0030695;GTPase regulator activity;0.043246493345184!GO:0006779;porphyrin biosynthetic process;0.0433383711310984!GO:0033014;tetrapyrrole biosynthetic process;0.0433383711310984!GO:0005784;translocon complex;0.0438840666085493!GO:0030433;ER-associated protein catabolic process;0.0439893696346461!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0439893696346461!GO:0043407;negative regulation of MAP kinase activity;0.0445740849089533!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0446782380964432!GO:0006520;amino acid metabolic process;0.0448556870985207!GO:0000096;sulfur amino acid metabolic process;0.0449203619402324!GO:0046966;thyroid hormone receptor binding;0.0453051109857011!GO:0006596;polyamine biosynthetic process;0.0453089801546887!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0454679433375794!GO:0016581;NuRD complex;0.045483994920041!GO:0006541;glutamine metabolic process;0.0458209194527202!GO:0032259;methylation;0.046318661751418!GO:0030508;thiol-disulfide exchange intermediate activity;0.0465258829263062!GO:0043414;biopolymer methylation;0.0465372878385562!GO:0030833;regulation of actin filament polymerization;0.0467442961712735!GO:0003756;protein disulfide isomerase activity;0.0469003512756594!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0469003512756594!GO:0009116;nucleoside metabolic process;0.0470023594031319!GO:0042585;germinal vesicle;0.0470023594031319!GO:0007569;cell aging;0.0470023594031319!GO:0007041;lysosomal transport;0.0473897096859777!GO:0042670;retinal cone cell differentiation;0.0478256275281748!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0478256275281748!GO:0046549;retinal cone cell development;0.0478256275281748!GO:0004518;nuclease activity;0.0480638734661435!GO:0043087;regulation of GTPase activity;0.0487195085954993!GO:0030911;TPR domain binding;0.0490634321226635!GO:0005811;lipid particle;0.049437433129908!GO:0006007;glucose catabolic process;0.0498261523106669 | |||
|sample_id=11395 | |sample_id=11395 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=periodontal ligament | |sample_tissue=periodontal ligament | ||
|top_motifs=PDX1:2.04858239889;ZNF238:1.59108139655;NFIX:1.23486110522;TFDP1:1.12781139101;NR3C1:1.10619275809;PAX8:1.04205510728;FOX{I1,J2}:1.03947186154;GFI1:1.00301332427;FOXA2:0.999241934949;GZF1:0.966321409211;TFAP4:0.936068972453;NKX2-2,8:0.911117583578;MYB:0.891733650835;NFATC1..3:0.877050668545;EN1,2:0.863002198916;SOX17:0.754954005216;LEF1_TCF7_TCF7L1,2:0.746434345393;ALX4:0.743581363121;ADNP_IRX_SIX_ZHX:0.693792145038;TGIF1:0.685080351894;PAX3,7:0.683285956529;AHR_ARNT_ARNT2:0.6647567672;TEAD1:0.654316186178;bHLH_family:0.640184922262;E2F1..5:0.602580562067;HBP1_HMGB_SSRP1_UBTF:0.591946731127;MZF1:0.591246107504;NFY{A,B,C}:0.578847593518;PRRX1,2:0.558625410064;TBX4,5:0.556232370594;STAT1,3:0.53702658628;BACH2:0.527698494462;HAND1,2:0.523144919775;HOXA9_MEIS1:0.499836127314;TLX1..3_NFIC{dimer}:0.498844618081;HSF1,2:0.484956889415;NRF1:0.462551294865;GFI1B:0.449443725329;SPZ1:0.42591941325;MYBL2:0.417525949297;ZNF143:0.408479831954;HES1:0.401028215437;NKX3-1:0.397773507421;GTF2I:0.393858679872;PAX5:0.392055294709;TEF:0.370519869507;NFE2L2:0.367368874709;FOS_FOS{B,L1}_JUN{B,D}:0.343297925137;TFCP2:0.341766277972;ELK1,4_GABP{A,B1}:0.341120808284;NFE2:0.334252170673;TFAP2{A,C}:0.323715024397;YY1:0.322955332962;TP53:0.321951494171;HOX{A5,B5}:0.301335418883;CRX:0.299704554389;NANOG:0.284756744617;MAZ:0.267751734951;STAT5{A,B}:0.256220855192;SP1:0.252778751427;ZFP161:0.237323229766;LHX3,4:0.235444183297;CEBPA,B_DDIT3:0.226943931541;ELF1,2,4:0.22367713604;MTF1:0.215489820041;FOXN1:0.208944865477;AR:0.190532308096;HOX{A6,A7,B6,B7}:0.190336946438;POU3F1..4:0.183180847429;FOSL2:0.181770511927;ALX1:0.178716342685;POU1F1:0.165047643609;SRF:0.158074495706;GTF2A1,2:0.155324403603;NHLH1,2:0.153713245959;MTE{core}:0.148239307707;HLF:0.146568938608;MAFB:0.144222773328;RBPJ:0.142700478387;NKX3-2:0.142182525233;HMGA1,2:0.135045863368;ZBTB6:0.125924570023;NKX6-1,2:0.100632854361;HIC1:0.0874212380357;EBF1:0.0711246320525;PRDM1:0.0696820784985;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0614192431465;NKX2-1,4:0.0425578592785;SOX5:0.0389400978757;FOXO1,3,4:0.0321466125087;HNF4A_NR2F1,2:0.0166412789926;CREB1:0.0101687342355;PATZ1:-0.0011583120952;FOXQ1:-0.00774829105519;NR1H4:-0.0186684394558;HNF1A:-0.0212993474117;HOX{A4,D4}:-0.031010419034;GATA6:-0.0335036682524;ZIC1..3:-0.0383974587787;ONECUT1,2:-0.0433863789065;MED-1{core}:-0.0438401737122;SREBF1,2:-0.0452598283353;XCPE1{core}:-0.0456954113352;EGR1..3:-0.0546946660246;NFIL3:-0.0607860473733;MYFfamily:-0.0759577337798;DMAP1_NCOR{1,2}_SMARC:-0.0793585890393;FOX{F1,F2,J1}:-0.0864326080191;TFAP2B:-0.0938646331708;MYOD1:-0.0959605180774;NKX2-3_NKX2-5:-0.106785932258;GATA4:-0.117524356898;IRF7:-0.120226815847;ZNF148:-0.120784295899;ESRRA:-0.125331961702;JUN:-0.12944190725;KLF4:-0.140349178372;RFX2..5_RFXANK_RFXAP:-0.146321257477;IRF1,2:-0.14671046648;XBP1:-0.151435196216;RFX1:-0.156072088281;ETS1,2:-0.170209384271;PAX6:-0.173386817806;RUNX1..3:-0.175469550958;ZNF423:-0.181851039377;NANOG{mouse}:-0.20025209137;MEF2{A,B,C,D}:-0.221623129519;ARID5B:-0.224963854765;NFE2L1:-0.247873175459;ATF5_CREB3:-0.251278684961;TAL1_TCF{3,4,12}:-0.262825168535;CDC5L:-0.263387327157;SPIB:-0.268974876433;RXR{A,B,G}:-0.280373195838;IKZF1:-0.283611636769;GCM1,2:-0.292266841896;TBP:-0.301771744387;POU5F1:-0.304246315634;BREu{core}:-0.313560177649;AIRE:-0.323937335031;T:-0.339719407669;SPI1:-0.346984496244;STAT2,4,6:-0.362551024967;POU6F1:-0.364665354147;FOX{D1,D2}:-0.372817774566;NFKB1_REL_RELA:-0.375648510775;FOXD3:-0.376243361098;ESR1:-0.393560969605;CUX2:-0.400547472525;ATF4:-0.420436067058;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.446057922215;OCT4_SOX2{dimer}:-0.452940216983;PAX2:-0.459879981899;ATF6:-0.466924682616;RREB1:-0.477043763378;PBX1:-0.503253414852;EVI1:-0.51288658755;PAX4:-0.521428309612;REST:-0.527894598282;FOXL1:-0.534437719045;PPARG:-0.534654819732;HIF1A:-0.536577152858;UFEwm:-0.537856446677;ATF2:-0.560451962968;BPTF:-0.570727171055;SOX{8,9,10}:-0.57319538893;TOPORS:-0.58756971929;POU2F1..3:-0.618821339052;SOX2:-0.641440752594;DBP:-0.647211733926;SMAD1..7,9:-0.648497882277;SNAI1..3:-0.651651013803;GLI1..3:-0.682526177938;CDX1,2,4:-0.704273516302;EP300:-0.706995393067;HMX1:-0.716703919881;TLX2:-0.728617850047;ZBTB16:-0.74573861199;ZNF384:-0.764878988178;RORA:-0.810179749275;PAX1,9:-0.816849700733;FOXM1:-0.818580691252;NR5A1,2:-0.840788463307;VSX1,2:-0.86473879184;FOXP3:-0.907160216055;ZEB1:-0.942064177988;RXRA_VDR{dimer}:-0.949248635069;FOXP1:-1.10763465053;PITX1..3:-1.14207976879;LMO2:-1.15188819846;IKZF2:-1.4789611644;NR6A1:-1.52950082534 | |top_motifs=PDX1:2.04858239889;ZNF238:1.59108139655;NFIX:1.23486110522;TFDP1:1.12781139101;NR3C1:1.10619275809;PAX8:1.04205510728;FOX{I1,J2}:1.03947186154;GFI1:1.00301332427;FOXA2:0.999241934949;GZF1:0.966321409211;TFAP4:0.936068972453;NKX2-2,8:0.911117583578;MYB:0.891733650835;NFATC1..3:0.877050668545;EN1,2:0.863002198916;SOX17:0.754954005216;LEF1_TCF7_TCF7L1,2:0.746434345393;ALX4:0.743581363121;ADNP_IRX_SIX_ZHX:0.693792145038;TGIF1:0.685080351894;PAX3,7:0.683285956529;AHR_ARNT_ARNT2:0.6647567672;TEAD1:0.654316186178;bHLH_family:0.640184922262;E2F1..5:0.602580562067;HBP1_HMGB_SSRP1_UBTF:0.591946731127;MZF1:0.591246107504;NFY{A,B,C}:0.578847593518;PRRX1,2:0.558625410064;TBX4,5:0.556232370594;STAT1,3:0.53702658628;BACH2:0.527698494462;HAND1,2:0.523144919775;HOXA9_MEIS1:0.499836127314;TLX1..3_NFIC{dimer}:0.498844618081;HSF1,2:0.484956889415;NRF1:0.462551294865;GFI1B:0.449443725329;SPZ1:0.42591941325;MYBL2:0.417525949297;ZNF143:0.408479831954;HES1:0.401028215437;NKX3-1:0.397773507421;GTF2I:0.393858679872;PAX5:0.392055294709;TEF:0.370519869507;NFE2L2:0.367368874709;FOS_FOS{B,L1}_JUN{B,D}:0.343297925137;TFCP2:0.341766277972;ELK1,4_GABP{A,B1}:0.341120808284;NFE2:0.334252170673;TFAP2{A,C}:0.323715024397;YY1:0.322955332962;TP53:0.321951494171;HOX{A5,B5}:0.301335418883;CRX:0.299704554389;NANOG:0.284756744617;MAZ:0.267751734951;STAT5{A,B}:0.256220855192;SP1:0.252778751427;ZFP161:0.237323229766;LHX3,4:0.235444183297;CEBPA,B_DDIT3:0.226943931541;ELF1,2,4:0.22367713604;MTF1:0.215489820041;FOXN1:0.208944865477;AR:0.190532308096;HOX{A6,A7,B6,B7}:0.190336946438;POU3F1..4:0.183180847429;FOSL2:0.181770511927;ALX1:0.178716342685;POU1F1:0.165047643609;SRF:0.158074495706;GTF2A1,2:0.155324403603;NHLH1,2:0.153713245959;MTE{core}:0.148239307707;HLF:0.146568938608;MAFB:0.144222773328;RBPJ:0.142700478387;NKX3-2:0.142182525233;HMGA1,2:0.135045863368;ZBTB6:0.125924570023;NKX6-1,2:0.100632854361;HIC1:0.0874212380357;EBF1:0.0711246320525;PRDM1:0.0696820784985;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0614192431465;NKX2-1,4:0.0425578592785;SOX5:0.0389400978757;FOXO1,3,4:0.0321466125087;HNF4A_NR2F1,2:0.0166412789926;CREB1:0.0101687342355;PATZ1:-0.0011583120952;FOXQ1:-0.00774829105519;NR1H4:-0.0186684394558;HNF1A:-0.0212993474117;HOX{A4,D4}:-0.031010419034;GATA6:-0.0335036682524;ZIC1..3:-0.0383974587787;ONECUT1,2:-0.0433863789065;MED-1{core}:-0.0438401737122;SREBF1,2:-0.0452598283353;XCPE1{core}:-0.0456954113352;EGR1..3:-0.0546946660246;NFIL3:-0.0607860473733;MYFfamily:-0.0759577337798;DMAP1_NCOR{1,2}_SMARC:-0.0793585890393;FOX{F1,F2,J1}:-0.0864326080191;TFAP2B:-0.0938646331708;MYOD1:-0.0959605180774;NKX2-3_NKX2-5:-0.106785932258;GATA4:-0.117524356898;IRF7:-0.120226815847;ZNF148:-0.120784295899;ESRRA:-0.125331961702;JUN:-0.12944190725;KLF4:-0.140349178372;RFX2..5_RFXANK_RFXAP:-0.146321257477;IRF1,2:-0.14671046648;XBP1:-0.151435196216;RFX1:-0.156072088281;ETS1,2:-0.170209384271;PAX6:-0.173386817806;RUNX1..3:-0.175469550958;ZNF423:-0.181851039377;NANOG{mouse}:-0.20025209137;MEF2{A,B,C,D}:-0.221623129519;ARID5B:-0.224963854765;NFE2L1:-0.247873175459;ATF5_CREB3:-0.251278684961;TAL1_TCF{3,4,12}:-0.262825168535;CDC5L:-0.263387327157;SPIB:-0.268974876433;RXR{A,B,G}:-0.280373195838;IKZF1:-0.283611636769;GCM1,2:-0.292266841896;TBP:-0.301771744387;POU5F1:-0.304246315634;BREu{core}:-0.313560177649;AIRE:-0.323937335031;T:-0.339719407669;SPI1:-0.346984496244;STAT2,4,6:-0.362551024967;POU6F1:-0.364665354147;FOX{D1,D2}:-0.372817774566;NFKB1_REL_RELA:-0.375648510775;FOXD3:-0.376243361098;ESR1:-0.393560969605;CUX2:-0.400547472525;ATF4:-0.420436067058;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.446057922215;OCT4_SOX2{dimer}:-0.452940216983;PAX2:-0.459879981899;ATF6:-0.466924682616;RREB1:-0.477043763378;PBX1:-0.503253414852;EVI1:-0.51288658755;PAX4:-0.521428309612;REST:-0.527894598282;FOXL1:-0.534437719045;PPARG:-0.534654819732;HIF1A:-0.536577152858;UFEwm:-0.537856446677;ATF2:-0.560451962968;BPTF:-0.570727171055;SOX{8,9,10}:-0.57319538893;TOPORS:-0.58756971929;POU2F1..3:-0.618821339052;SOX2:-0.641440752594;DBP:-0.647211733926;SMAD1..7,9:-0.648497882277;SNAI1..3:-0.651651013803;GLI1..3:-0.682526177938;CDX1,2,4:-0.704273516302;EP300:-0.706995393067;HMX1:-0.716703919881;TLX2:-0.728617850047;ZBTB16:-0.74573861199;ZNF384:-0.764878988178;RORA:-0.810179749275;PAX1,9:-0.816849700733;FOXM1:-0.818580691252;NR5A1,2:-0.840788463307;VSX1,2:-0.86473879184;FOXP3:-0.907160216055;ZEB1:-0.942064177988;RXRA_VDR{dimer}:-0.949248635069;FOXP1:-1.10763465053;PITX1..3:-1.14207976879;LMO2:-1.15188819846;IKZF2:-1.4789611644;NR6A1:-1.52950082534 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11395-118C9;search_select_hide=table117:FF:11395-118C9 | |||
}} | }} | ||
Latest revision as of 17:57, 4 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11907 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11907
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11907
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0706 |
| 10 | 10 | 0.6 |
| 100 | 100 | 0.302 |
| 101 | 101 | 0.677 |
| 102 | 102 | 0.196 |
| 103 | 103 | 0.685 |
| 104 | 104 | 0.438 |
| 105 | 105 | 0.763 |
| 106 | 106 | 0.0217 |
| 107 | 107 | 0.447 |
| 108 | 108 | 0.304 |
| 109 | 109 | 0.894 |
| 11 | 11 | 0.269 |
| 110 | 110 | 0.531 |
| 111 | 111 | 0.326 |
| 112 | 112 | 0.119 |
| 113 | 113 | 0.0103 |
| 114 | 114 | 0.497 |
| 115 | 115 | 0.311 |
| 116 | 116 | 0.288 |
| 117 | 117 | 0.436 |
| 118 | 118 | 0.298 |
| 119 | 119 | 0.0292 |
| 12 | 12 | 0.661 |
| 120 | 120 | 0.683 |
| 121 | 121 | 0.441 |
| 122 | 122 | 0.938 |
| 123 | 123 | 9.76366e-5 |
| 124 | 124 | 0.748 |
| 125 | 125 | 0.33 |
| 126 | 126 | 0.495 |
| 127 | 127 | 0.668 |
| 128 | 128 | 0.295 |
| 129 | 129 | 0.979 |
| 13 | 13 | 0.135 |
| 130 | 130 | 0.01 |
| 131 | 131 | 0.941 |
| 132 | 132 | 0.28 |
| 133 | 133 | 0.86 |
| 134 | 134 | 0.0785 |
| 135 | 135 | 0.296 |
| 136 | 136 | 0.88 |
| 137 | 137 | 0.893 |
| 138 | 138 | 0.387 |
| 139 | 139 | 1.14668e-4 |
| 14 | 14 | 0.267 |
| 140 | 140 | 0.347 |
| 141 | 141 | 0.598 |
| 142 | 142 | 0.914 |
| 143 | 143 | 0.769 |
| 144 | 144 | 0.799 |
| 145 | 145 | 0.958 |
| 146 | 146 | 0.307 |
| 147 | 147 | 0.136 |
| 148 | 148 | 0.786 |
| 149 | 149 | 0.629 |
| 15 | 15 | 0.606 |
| 150 | 150 | 0.61 |
| 151 | 151 | 0.18 |
| 152 | 152 | 0.96 |
| 153 | 153 | 0.66 |
| 154 | 154 | 0.85 |
| 155 | 155 | 0.0279 |
| 156 | 156 | 0.888 |
| 157 | 157 | 0.312 |
| 158 | 158 | 0.0487 |
| 159 | 159 | 0.23 |
| 16 | 16 | 0.505 |
| 160 | 160 | 0.0687 |
| 161 | 161 | 0.5 |
| 162 | 162 | 0.324 |
| 163 | 163 | 0.321 |
| 164 | 164 | 0.143 |
| 165 | 165 | 0.249 |
| 166 | 166 | 0.617 |
| 167 | 167 | 0.345 |
| 168 | 168 | 0.838 |
| 169 | 169 | 0.284 |
| 17 | 17 | 0.335 |
| 18 | 18 | 0.879 |
| 19 | 19 | 0.786 |
| 2 | 2 | 0.641 |
| 20 | 20 | 0.596 |
| 21 | 21 | 0.638 |
| 22 | 22 | 0.866 |
| 23 | 23 | 0.547 |
| 24 | 24 | 0.166 |
| 25 | 25 | 0.287 |
| 26 | 26 | 0.654 |
| 27 | 27 | 0.746 |
| 28 | 28 | 0.695 |
| 29 | 29 | 0.224 |
| 3 | 3 | 0.257 |
| 30 | 30 | 0.313 |
| 31 | 31 | 0.544 |
| 32 | 32 | 0.178 |
| 33 | 33 | 0.863 |
| 34 | 34 | 0.469 |
| 35 | 35 | 0.0249 |
| 36 | 36 | 0.1 |
| 37 | 37 | 0.38 |
| 38 | 38 | 0.651 |
| 39 | 39 | 0.523 |
| 4 | 4 | 0.339 |
| 40 | 40 | 0.0409 |
| 41 | 41 | 0.909 |
| 42 | 42 | 0.98 |
| 43 | 43 | 0.419 |
| 44 | 44 | 0.0167 |
| 45 | 45 | 0.795 |
| 46 | 46 | 0.173 |
| 47 | 47 | 0.111 |
| 48 | 48 | 0.315 |
| 49 | 49 | 0.307 |
| 5 | 5 | 0.585 |
| 50 | 50 | 0.406 |
| 51 | 51 | 0.859 |
| 52 | 52 | 0.714 |
| 53 | 53 | 0.321 |
| 54 | 54 | 0.873 |
| 55 | 55 | 0.309 |
| 56 | 56 | 0.583 |
| 57 | 57 | 0.949 |
| 58 | 58 | 0.116 |
| 59 | 59 | 0.363 |
| 6 | 6 | 0.847 |
| 60 | 60 | 0.0778 |
| 61 | 61 | 0.701 |
| 62 | 62 | 0.0576 |
| 63 | 63 | 0.539 |
| 64 | 64 | 0.129 |
| 65 | 65 | 0.145 |
| 66 | 66 | 0.0276 |
| 67 | 67 | 0.632 |
| 68 | 68 | 0.392 |
| 69 | 69 | 0.546 |
| 7 | 7 | 0.255 |
| 70 | 70 | 0.0109 |
| 71 | 71 | 0.291 |
| 72 | 72 | 0.891 |
| 73 | 73 | 0.72 |
| 74 | 74 | 0.158 |
| 75 | 75 | 0.16 |
| 76 | 76 | 0.643 |
| 77 | 77 | 0.668 |
| 78 | 78 | 0.379 |
| 79 | 79 | 0.325 |
| 8 | 8 | 0.229 |
| 80 | 80 | 0.579 |
| 81 | 81 | 0.196 |
| 82 | 82 | 0.00382 |
| 83 | 83 | 0.986 |
| 84 | 84 | 0.693 |
| 85 | 85 | 0.0155 |
| 86 | 86 | 0.381 |
| 87 | 87 | 0.256 |
| 88 | 88 | 0.854 |
| 89 | 89 | 0.377 |
| 9 | 9 | 0.637 |
| 90 | 90 | 0.599 |
| 91 | 91 | 0.686 |
| 92 | 92 | 0.716 |
| 93 | 93 | 0.942 |
| 94 | 94 | 0.402 |
| 95 | 95 | 0.479 |
| 96 | 96 | 0.58 |
| 97 | 97 | 0.2 |
| 98 | 98 | 0.367 |
| 99 | 99 | 0.0539 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11907
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
