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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008256
|DRA_sample_Accession=CAGE@SAMD00005963
|accession_numbers=CAGE;DRX008364;DRR009236;DRZ000661;DRZ002046
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005963!sRNA-Seq@SAMD00005963
|accession_numbers=CAGE;DRX008364;DRR009236;DRZ000661;DRZ002046;DRZ012011;DRZ013396
|accession_numbers_RNASeq=RNA-Seq;DRX057109;DRR062868;DRZ007944!sRNA-Seq;DRX037100;DRR041466;DRZ007108
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!2.13!275.23!C11orf9;;chr2:19558373..19558392,-!p1@OSR1!1.91!210.84!OSR1;;chr18:19749386..19749404,+!p2@GATA6!1.83!92.77!GATA6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.70!49.49!SEBOX;;chr20:6748325..6748352,+!p1@BMP2!1.67!64.48!BMP2;;chr11:32457075..32457095,-!p1@WT1!1.67!45.39!WT1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.66!44.19!SEBOX;;chr18:19749541..19749557,+!p1@GATA6!1.56!107.87!GATA6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!32.59!ZBED1;;chr10:51572408..51572454,+!p3@NCOA4!1.51!175.75!NCOA4;;chr8:37963466..37963506,+!p3@ASH2L!1.50!37.69!ASH2L;;chr15:83953397..83953425,-!p1@BNC1!1.50!35.39!BNC1;;chr7:27153454..27153469,-!p2@HOXA3!1.44!26.49!HOXA3;;chr6:19837592..19837621,+!p1@ID4!1.40!144.26!ID4;;chr20:61051039..61051057,-!p1@GATA5!1.39!23.29!GATA5;;chr18:19749353..19749367,+!p4@GATA6!1.38!23.09!GATA6;;chr4:174451370..174451387,-!p1@HAND2!1.37!22.39!HAND2;;chr19:58400344..58400364,-!p2@ZNF814!1.34!29.99!ZNF814;;chr12:8186270..8186292,+!p3@FOXJ2!1.32!19.79!FOXJ2;;chr10:51572339..51572376,+!p4@NCOA4!1.30!42.29!NCOA4;;chr7:27183114..27183138,-!p3@HOXA5!1.30!18.79!HOXA5;;chr7:27170359..27170381,-!p1@HOXA4!1.29!18.30!HOXA4;;chr1:151032860..151032918,+!p1@MLLT11!1.22!183.85!MLLT11;;chr7:27183263..27183284,-!p2@HOXA5!1.21!15.40!HOXA5;;chr7:27183191..27183214,-!p4@HOXA5!1.21!15.20!HOXA5;;chr7:27170274..27170308,-!p3@HOXA4!1.20!14.90!HOXA4;;chr3:25470156..25470227,+!p2@RARB!1.13!12.40!RARB;;chr8:37963407..37963454,+!p2@ASH2L!1.11!35.49!ASH2L;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.10!HAND2;;chr5:172662197..172662216,-!p1@NKX2-5!1.05!10.30!NKX2-5;;chr17:46622070..46622109,-!p1@HOXB2!1.04!22.69!HOXB2;;chr12:26277817..26277863,-!p2@BHLHE41!1.03!13.20!BHLHE41;;chr7:27183291..27183324,-!p1@HOXA5!1.03!9.60!HOXA5;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.01!9.20!SEBOX;;chr16:79634624..79634642,-!p1@MAF!1.00!35.89!MAF;;chr16:79633894..79633954,-!p3@MAF!1.00!17.60!MAF;;chr6:28321971..28321995,-!p1@ZNF323!1.00!8.90!ZNF323;;chr1:151032922..151032951,+!p2@MLLT11!0.97!13.90!MLLT11;;chr7:27153428..27153440,-!p3@HOXA3!0.97!8.30!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!0.97!8.30!SIX2;;chr1:151032739..151032748,+!p6@MLLT11!0.95!10.10!MLLT11;;chr16:88519743..88519754,+!p2@ZFPM1!0.95!8.80!ZFPM1;;chr16:88519669..88519726,+!p1@ZFPM1!0.93!70.28!ZFPM1;;chrX:48900782..48900793,-!p3@TFE3!0.93!14.40!TFE3;;chr17:46682321..46682362,-!p1@HOXB6!0.92!7.40!HOXB6;;chr3:25469815..25469866,+!p3@RARB!0.91!7.20!RARB;;chr20:30193083..30193098,+!p1@ID1!0.90!594.04!ID1;;chr17:46622114..46622138,-!p4@HOXB2!0.90!11.00!HOXB2;;chr3:178789522..178789564,-!p2@ZMAT3!0.89!51.89!ZMAT3;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.50!ZFPM2;;chr16:67881588..67881612,-!p2@CENPT!0.89!9.30!CENPT;;chr11:32457413..32457431,-!p2@WT1!0.88!6.60!WT1;;chr4:87857474..87857489,+!p7@AFF1!0.86!11.20!AFF1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.86!6.30!ZBTB7C;;chr5:139492456..139492489,+!p7@PURA!0.85!6.10!PURA;;chr18:19749517..19749531,+!p3@GATA6!0.84!10.90!GATA6;;chr12:26277956..26277980,-!p1@BHLHE41!0.83!22.19!BHLHE41;;chr14:21994337..21994442,-!p1@SALL2!0.82!16.60!SALL2;;chr7:27183095..27183108,-!p7@HOXA5!0.82!5.60!HOXA5;;chr16:86612320..86612394,+!p1@FOXL1!0.82!5.60!FOXL1;;chr3:114343768..114343822,-!p1@ZBTB20!0.79!24.49!ZBTB20;;chr9:96717629..96717644,-!p1@BARX1!0.79!5.20!BARX1;;chr15:67418177..67418204,+!p9@SMAD3!0.79!5.10!SMAD3;;chr12:80085061..80085119,-!p6@PAWR!0.78!8.40!PAWR;;chr12:26277929..26277955,-!p3@BHLHE41!0.78!7.40!BHLHE41;;chr2:66662510..66662521,+!p6@MEIS1!0.78!5.00!MEIS1;;chr4:87856129..87856186,+!p1@AFF1!0.77!74.98!AFF1;;chr1:23885981..23886002,-!p1@ID3!0.76!916.85!ID3;;chr11:65686802..65686818,+!p6@DRAP1!0.76!8.70!DRAP1;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.20!HOXB7;;chr15:37392094..37392116,-!p6@MEIS2!0.76!6.00!MEIS2;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.80!HOXC4;;chr15:67418047..67418093,+!p4@SMAD3!0.75!6.00!SMAD3;;chr1:151032782..151032801,+!p4@MLLT11!0.74!9.70!MLLT11;;chr3:178789993..178790049,-!p5@ZMAT3!0.74!6.80!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.60!TBX18;;chr6:28321909..28321965,-!p3@ZNF323!0.74!4.50!ZNF323;;chr16:79634595..79634620,-!p2@MAF!0.73!8.60!MAF;;chr10:63809106..63809127,+!p1@ARID5B!0.72!64.38!ARID5B;;chr19:47922750..47922795,-!p1@MEIS3!0.72!7.40!MEIS3;;chr7:27183156..27183167,-!p8@HOXA5!0.71!4.10!HOXA5;;chr4:87856191..87856208,+!p2@AFF1!0.70!36.39!AFF1;;chr14:73360799..73360817,-!p1@DPF3!0.70!15.50!DPF3;;chr6:21597765..21597779,+!p2@SOX4!0.69!36.09!SOX4;;chr17:46687959..46688007,-!p2@HOXB7!0.69!5.60!HOXB7;;chr7:27170324..27170335,-!p7@HOXA4!0.69!3.90!HOXA4;;chr9:16728161..16728185,-!p4@BNC2!0.69!3.90!BNC2;;chr11:32457103..32457123,-!p3@WT1!0.69!3.90!WT1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.68!42.59!LRRFIP1;;chr5:72744594..72744609,-!p1@FOXD1!0.68!19.79!FOXD1;;chr11:46299539..46299620,+!p2@CREB3L1!0.68!6.90!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!0.68!5.10!NFATC2;;chr16:86544113..86544145,+!p1@FOXF1!0.68!4.90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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213
|ffid_belonging_in_development=CL:0000222
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor3.CNhs12012.11402-118D7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor3.CNhs12012.11402-118D7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor3.CNhs12012.11402-118D7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor3.CNhs12012.11402-118D7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesothelial%2520Cells%252c%2520donor3.CNhs12012.11402-118D7.hg38.nobarcode.ctss.bed.gz
|id=FF:11402-118D7
|id=FF:11402-118D7
|is_a=EFO:0002091;;FF:0000099
|is_a=EFO:0002091;;FF:0000099
|is_obsolete=
|is_obsolete=
|library_id=CNhs12012
|library_id=CNhs12012
|library_id_phase_based=2:CNhs12012
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11402
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.ATGTCA.11402
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11402
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.ATGTCA.11402
|name=Mesothelial Cells, donor3
|name=Mesothelial Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12012,LSID837,release011,COMPLETED
|profile_hcage=CNhs12012,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10007,,,
|profile_srnaseq=SRhi10007,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 82:
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|sample_age=24
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=GZF1:2.79865758957;EVI1:1.99204523786;NKX3-1:1.9211987188;GCM1,2:1.87250521376;TEF:1.78967219445;HOX{A5,B5}:1.6685262455;ONECUT1,2:1.64627801212;ZBTB6:1.41786651104;ZNF384:1.31983282222;CRX:1.3053453338;HSF1,2:1.29357744407;TFCP2:1.24245172698;PAX5:1.22708843818;TEAD1:1.12303278495;AIRE:1.09267761454;ZIC1..3:1.08328445731;MYBL2:1.08003775384;TOPORS:1.04038383552;UFEwm:1.02035110184;POU1F1:0.978410691465;XCPE1{core}:0.92534978577;GLI1..3:0.894587827946;GATA4:0.858294109635;NKX2-1,4:0.856508425471;MTE{core}:0.851132831754;NKX3-2:0.839861344562;PAX4:0.820670703143;RXR{A,B,G}:0.813082047707;EGR1..3:0.807169724465;HIC1:0.783293296503;NFE2L1:0.778810783217;MAZ:0.768271523382;TFAP2B:0.761298084153;NR3C1:0.74854718882;ZBTB16:0.712988974602;PRDM1:0.675499516126;SP1:0.661048162459;HOXA9_MEIS1:0.653917303737;GTF2A1,2:0.644001859614;EP300:0.624582471293;LMO2:0.623884687821;TLX1..3_NFIC{dimer}:0.612558008372;MZF1:0.610560903805;KLF4:0.603768769912;SMAD1..7,9:0.592094823199;SRF:0.591043349696;MTF1:0.569443621539;GTF2I:0.565617117089;STAT5{A,B}:0.516908284571;HOX{A4,D4}:0.502913151769;TP53:0.491190970284;ZNF423:0.488336512482;ARID5B:0.48685081165;NFATC1..3:0.471597884444;EN1,2:0.468290561193;SPZ1:0.418679772162;PAX1,9:0.390921520089;NFE2L2:0.387506593985;NR6A1:0.343059426732;MYOD1:0.34269723333;CDX1,2,4:0.34264696973;IKZF1:0.310403016005;FOXM1:0.303353258591;GFI1B:0.297941277517;ZNF148:0.279250604223;ZFP161:0.269166655954;RREB1:0.263449263787;NR1H4:0.252755033493;bHLH_family:0.248024911532;CDC5L:0.24303049123;POU6F1:0.240437179281;TFAP2{A,C}:0.236694967222;PAX6:0.226340644235;NKX6-1,2:0.20632867564;TAL1_TCF{3,4,12}:0.201871121107;TBX4,5:0.18063395378;NHLH1,2:0.163388171078;HBP1_HMGB_SSRP1_UBTF:0.127487001066;REST:0.119654823953;FOS_FOS{B,L1}_JUN{B,D}:0.11673162174;JUN:0.104657812459;MED-1{core}:0.102958043265;ADNP_IRX_SIX_ZHX:0.0968280825088;SOX2:0.0686093366607;FOSL2:0.0598563061152;FOX{I1,J2}:0.0574918571808;BACH2:0.0476551161928;MYFfamily:0.0303020698643;HLF:0.0277031759186;TBP:0.0216801605793;IKZF2:0.0171286631292;PATZ1:0.0165166215613;STAT2,4,6:0.0087185095945;HNF1A:0.00610637278896;ZNF143:-0.00394772862611;AR:-0.00530668754938;FOXO1,3,4:-0.00813131342033;HMGA1,2:-0.0219581049971;SNAI1..3:-0.02925807234;IRF7:-0.045678981328;HNF4A_NR2F1,2:-0.055461721046;TFAP4:-0.0607828536718;HMX1:-0.0736867612654;NFIX:-0.0746997446151;SOX5:-0.0809857326487;NFIL3:-0.0849849171939;ELK1,4_GABP{A,B1}:-0.093130938152;FOXQ1:-0.0950770023258;ATF6:-0.0971112770523;IRF1,2:-0.104358719517;OCT4_SOX2{dimer}:-0.116882881429;ZNF238:-0.133902592904;EBF1:-0.136956252854;ALX1:-0.140019335845;NFE2:-0.144293510507;FOXL1:-0.151026120612;ZEB1:-0.159084488888;ATF2:-0.183778013636;GATA6:-0.194644300074;FOXP3:-0.198140497793;RXRA_VDR{dimer}:-0.203279446995;PPARG:-0.20886819408;DMAP1_NCOR{1,2}_SMARC:-0.214854921895;NFKB1_REL_RELA:-0.236213201983;STAT1,3:-0.242379479788;HAND1,2:-0.250458065369;XBP1:-0.272078376162;ALX4:-0.282300262587;ESR1:-0.286537541422;RFX1:-0.288199788407;SOX17:-0.313719526324;FOXD3:-0.323864470146;PAX2:-0.335443407688;PRRX1,2:-0.340535852126;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.38467014714;SREBF1,2:-0.388807143599;TLX2:-0.401948695838;LHX3,4:-0.41223694341;FOX{D1,D2}:-0.42375314999;HIF1A:-0.432249109931;FOXA2:-0.463945554298;CUX2:-0.469293071291;FOXP1:-0.47416033751;POU3F1..4:-0.485409926952;TFDP1:-0.489203031858;SPI1:-0.495356852546;E2F1..5:-0.495366213396;NRF1:-0.497637748627;FOXN1:-0.503626938037;LEF1_TCF7_TCF7L1,2:-0.508067405952;DBP:-0.508586408749;ESRRA:-0.543982889801;CEBPA,B_DDIT3:-0.550780802383;RUNX1..3:-0.553536789631;ETS1,2:-0.554808849315;MAFB:-0.575100899117;PAX8:-0.586344597582;RFX2..5_RFXANK_RFXAP:-0.588192328272;MEF2{A,B,C,D}:-0.605594185979;TGIF1:-0.606474130252;PBX1:-0.646361094764;NANOG:-0.646418633409;T:-0.646717435275;HES1:-0.64911037965;HOX{A6,A7,B6,B7}:-0.659367741079;NFY{A,B,C}:-0.688589414666;SPIB:-0.694525467986;CREB1:-0.697854904519;NKX2-2,8:-0.704585055994;PAX3,7:-0.724734361355;PITX1..3:-0.728270993235;ELF1,2,4:-0.751672811093;BPTF:-0.788127149857;ATF5_CREB3:-0.83384292433;ATF4:-0.856118731171;SOX{8,9,10}:-0.872584768798;NKX2-3_NKX2-5:-0.881666227982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.959753673024;PDX1:-1.02364979051;RBPJ:-1.02395296608;BREu{core}:-1.03936671098;GFI1:-1.04479132601;FOX{F1,F2,J1}:-1.09788234284;VSX1,2:-1.14779323059;NR5A1,2:-1.17739013316;YY1:-1.17961052977;POU2F1..3:-1.20779635705;AHR_ARNT_ARNT2:-1.23540580578;POU5F1:-1.25537690104;MYB:-1.36498533576;RORA:-1.42813811832;NANOG{mouse}:-1.61659202764
|top_motifs=GZF1:2.79865758957;EVI1:1.99204523786;NKX3-1:1.9211987188;GCM1,2:1.87250521376;TEF:1.78967219445;HOX{A5,B5}:1.6685262455;ONECUT1,2:1.64627801212;ZBTB6:1.41786651104;ZNF384:1.31983282222;CRX:1.3053453338;HSF1,2:1.29357744407;TFCP2:1.24245172698;PAX5:1.22708843818;TEAD1:1.12303278495;AIRE:1.09267761454;ZIC1..3:1.08328445731;MYBL2:1.08003775384;TOPORS:1.04038383552;UFEwm:1.02035110184;POU1F1:0.978410691465;XCPE1{core}:0.92534978577;GLI1..3:0.894587827946;GATA4:0.858294109635;NKX2-1,4:0.856508425471;MTE{core}:0.851132831754;NKX3-2:0.839861344562;PAX4:0.820670703143;RXR{A,B,G}:0.813082047707;EGR1..3:0.807169724465;HIC1:0.783293296503;NFE2L1:0.778810783217;MAZ:0.768271523382;TFAP2B:0.761298084153;NR3C1:0.74854718882;ZBTB16:0.712988974602;PRDM1:0.675499516126;SP1:0.661048162459;HOXA9_MEIS1:0.653917303737;GTF2A1,2:0.644001859614;EP300:0.624582471293;LMO2:0.623884687821;TLX1..3_NFIC{dimer}:0.612558008372;MZF1:0.610560903805;KLF4:0.603768769912;SMAD1..7,9:0.592094823199;SRF:0.591043349696;MTF1:0.569443621539;GTF2I:0.565617117089;STAT5{A,B}:0.516908284571;HOX{A4,D4}:0.502913151769;TP53:0.491190970284;ZNF423:0.488336512482;ARID5B:0.48685081165;NFATC1..3:0.471597884444;EN1,2:0.468290561193;SPZ1:0.418679772162;PAX1,9:0.390921520089;NFE2L2:0.387506593985;NR6A1:0.343059426732;MYOD1:0.34269723333;CDX1,2,4:0.34264696973;IKZF1:0.310403016005;FOXM1:0.303353258591;GFI1B:0.297941277517;ZNF148:0.279250604223;ZFP161:0.269166655954;RREB1:0.263449263787;NR1H4:0.252755033493;bHLH_family:0.248024911532;CDC5L:0.24303049123;POU6F1:0.240437179281;TFAP2{A,C}:0.236694967222;PAX6:0.226340644235;NKX6-1,2:0.20632867564;TAL1_TCF{3,4,12}:0.201871121107;TBX4,5:0.18063395378;NHLH1,2:0.163388171078;HBP1_HMGB_SSRP1_UBTF:0.127487001066;REST:0.119654823953;FOS_FOS{B,L1}_JUN{B,D}:0.11673162174;JUN:0.104657812459;MED-1{core}:0.102958043265;ADNP_IRX_SIX_ZHX:0.0968280825088;SOX2:0.0686093366607;FOSL2:0.0598563061152;FOX{I1,J2}:0.0574918571808;BACH2:0.0476551161928;MYFfamily:0.0303020698643;HLF:0.0277031759186;TBP:0.0216801605793;IKZF2:0.0171286631292;PATZ1:0.0165166215613;STAT2,4,6:0.0087185095945;HNF1A:0.00610637278896;ZNF143:-0.00394772862611;AR:-0.00530668754938;FOXO1,3,4:-0.00813131342033;HMGA1,2:-0.0219581049971;SNAI1..3:-0.02925807234;IRF7:-0.045678981328;HNF4A_NR2F1,2:-0.055461721046;TFAP4:-0.0607828536718;HMX1:-0.0736867612654;NFIX:-0.0746997446151;SOX5:-0.0809857326487;NFIL3:-0.0849849171939;ELK1,4_GABP{A,B1}:-0.093130938152;FOXQ1:-0.0950770023258;ATF6:-0.0971112770523;IRF1,2:-0.104358719517;OCT4_SOX2{dimer}:-0.116882881429;ZNF238:-0.133902592904;EBF1:-0.136956252854;ALX1:-0.140019335845;NFE2:-0.144293510507;FOXL1:-0.151026120612;ZEB1:-0.159084488888;ATF2:-0.183778013636;GATA6:-0.194644300074;FOXP3:-0.198140497793;RXRA_VDR{dimer}:-0.203279446995;PPARG:-0.20886819408;DMAP1_NCOR{1,2}_SMARC:-0.214854921895;NFKB1_REL_RELA:-0.236213201983;STAT1,3:-0.242379479788;HAND1,2:-0.250458065369;XBP1:-0.272078376162;ALX4:-0.282300262587;ESR1:-0.286537541422;RFX1:-0.288199788407;SOX17:-0.313719526324;FOXD3:-0.323864470146;PAX2:-0.335443407688;PRRX1,2:-0.340535852126;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.38467014714;SREBF1,2:-0.388807143599;TLX2:-0.401948695838;LHX3,4:-0.41223694341;FOX{D1,D2}:-0.42375314999;HIF1A:-0.432249109931;FOXA2:-0.463945554298;CUX2:-0.469293071291;FOXP1:-0.47416033751;POU3F1..4:-0.485409926952;TFDP1:-0.489203031858;SPI1:-0.495356852546;E2F1..5:-0.495366213396;NRF1:-0.497637748627;FOXN1:-0.503626938037;LEF1_TCF7_TCF7L1,2:-0.508067405952;DBP:-0.508586408749;ESRRA:-0.543982889801;CEBPA,B_DDIT3:-0.550780802383;RUNX1..3:-0.553536789631;ETS1,2:-0.554808849315;MAFB:-0.575100899117;PAX8:-0.586344597582;RFX2..5_RFXANK_RFXAP:-0.588192328272;MEF2{A,B,C,D}:-0.605594185979;TGIF1:-0.606474130252;PBX1:-0.646361094764;NANOG:-0.646418633409;T:-0.646717435275;HES1:-0.64911037965;HOX{A6,A7,B6,B7}:-0.659367741079;NFY{A,B,C}:-0.688589414666;SPIB:-0.694525467986;CREB1:-0.697854904519;NKX2-2,8:-0.704585055994;PAX3,7:-0.724734361355;PITX1..3:-0.728270993235;ELF1,2,4:-0.751672811093;BPTF:-0.788127149857;ATF5_CREB3:-0.83384292433;ATF4:-0.856118731171;SOX{8,9,10}:-0.872584768798;NKX2-3_NKX2-5:-0.881666227982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.959753673024;PDX1:-1.02364979051;RBPJ:-1.02395296608;BREu{core}:-1.03936671098;GFI1:-1.04479132601;FOX{F1,F2,J1}:-1.09788234284;VSX1,2:-1.14779323059;NR5A1,2:-1.17739013316;YY1:-1.17961052977;POU2F1..3:-1.20779635705;AHR_ARNT_ARNT2:-1.23540580578;POU5F1:-1.25537690104;MYB:-1.36498533576;RORA:-1.42813811832;NANOG{mouse}:-1.61659202764
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11402-118D7;search_select_hide=table117:FF:11402-118D7
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Mesothelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12012
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stage24 years old adult
sexfemale
age24
cell typemesothelial cell
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005963
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12012 CAGE DRX008364 DRR009236
Accession ID Hg19

Library idBAMCTSS
CNhs12012 DRZ000661 DRZ002046
Accession ID Hg38

Library idBAMCTSS
CNhs12012 DRZ012011 DRZ013396
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005963
sRNA-Seq  SAMD00005963
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10051 RNA-Seq DRX057109 DRR062868
SRhi10007.ATGTCA sRNA-Seq DRX037100 DRR041466
Accession ID Hg19

Library idBAMCTSS
RDhi10051 DRZ007944
SRhi10007.ATGTCA DRZ007108


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.336
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.147
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0.0414
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0947
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.279
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0521
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00702
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.132
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0414
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0.672
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.607
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0792
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.016
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0414
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0592
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.231
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.291
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.352
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.171
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.978
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.146
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0792
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0792
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12012

Jaspar motifP-value
MA0002.20.00773
MA0003.10.937
MA0004.10.0185
MA0006.10.0164
MA0007.10.869
MA0009.10.464
MA0014.10.539
MA0017.10.443
MA0018.21.38964e-4
MA0019.10.124
MA0024.13.80044e-5
MA0025.10.157
MA0027.10.576
MA0028.10.0265
MA0029.10.315
MA0030.10.213
MA0031.10.0628
MA0035.20.0852
MA0038.10.00423
MA0039.20.371
MA0040.10.771
MA0041.10.654
MA0042.10.885
MA0043.10.00202
MA0046.10.299
MA0047.20.0128
MA0048.10.517
MA0050.10.0485
MA0051.10.176
MA0052.19.3182e-4
MA0055.10.616
MA0057.10.556
MA0058.10.00248
MA0059.10.0549
MA0060.12.10689e-6
MA0061.10.243
MA0062.22.07675e-5
MA0065.20.181
MA0066.10.762
MA0067.10.00436
MA0068.10.692
MA0069.10.608
MA0070.10.554
MA0071.10.274
MA0072.10.0459
MA0073.10.837
MA0074.10.701
MA0076.10.0114
MA0077.10.304
MA0078.10.767
MA0079.20.094
MA0080.25.23532e-10
MA0081.10.00458
MA0083.10.0817
MA0084.10.175
MA0087.10.877
MA0088.10.135
MA0090.11.63451e-5
MA0091.10.2
MA0092.10.674
MA0093.10.0257
MA0099.20.611
MA0100.14.25854e-4
MA0101.10.115
MA0102.20.422
MA0103.10.569
MA0104.20.00114
MA0105.10.0408
MA0106.10.276
MA0107.10.525
MA0108.20.337
MA0111.10.249
MA0112.20.132
MA0113.10.77
MA0114.10.33
MA0115.10.902
MA0116.10.00847
MA0117.10.264
MA0119.10.692
MA0122.10.236
MA0124.10.00881
MA0125.10.733
MA0131.10.0772
MA0135.10.0616
MA0136.11.86886e-12
MA0137.20.431
MA0138.20.0676
MA0139.10.392
MA0140.10.844
MA0141.10.0995
MA0142.10.182
MA0143.10.582
MA0144.10.396
MA0145.10.113
MA0146.10.853
MA0147.15.91101e-4
MA0148.10.19
MA0149.10.806
MA0150.10.473
MA0152.10.788
MA0153.10.653
MA0154.10.227
MA0155.10.156
MA0156.15.62263e-7
MA0157.10.108
MA0159.10.975
MA0160.10.0246
MA0162.10.83
MA0163.10.00132
MA0164.10.219
MA0258.10.166
MA0259.10.00193



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12012

Novel motifP-value
10.0977
100.0168
1000.324
1010.933
1020.535
1030.915
1040.289
1050.251
1060.0951
1070.0175
1080.868
1090.179
110.577
1100.621
1110.00575
1120.878
1130.043
1140.603
1150.048
1160.399
1170.109
1180.656
1190.721
120.232
1200.681
1210.991
1220.496
1230.00182
1240.235
1250.194
1260.207
1270.724
1280.0614
1290.616
130.195
1300.486
1310.126
1320.0353
1330.204
1340.937
1350.0382
1360.365
1370.498
1380.998
1390.979
140.991
1400.744
1410.0283
1420.168
1430.272
1440.445
1450.445
1460.228
1470.36
1480.742
1490.494
150.601
1500.179
1510.867
1520.00364
1530.46
1540.685
1550.218
1560.709
1570.695
1580.0183
1590.778
160.367
1600.809
1610.963
1620.345
1630.0153
1640.344
1650.233
1660.708
1670.263
1680.604
1690.53
170.904
180.678
190.695
20.256
200.707
210.749
220.864
230.588
240.928
250.0342
260.539
270.833
280.599
290.515
30.47
300.353
310.95
320.211
330.335
340.844
350.107
360.00476
370.69
380.597
390.319
40.259
400.0432
410.0558
420.257
430.43
440.313
450.47
460.429
470.452
480.611
490.0706
50.0916
500.85
510.829
520.184
530.219
540.415
550.231
560.918
570.802
580.13
590.529
60.844
600.715
610.216
620.126
630.446
640.154
650.976
660.357
670.852
680.753
690.174
70.0349
700.308
710.0531
720.408
730.119
740.88
750.329
760.703
770.0264
780.652
790.0672
80.821
800.104
810.994
820.741
830.664
840.599
850.352
860.613
870.116
880.539
890.247
90.647
900.44
910.503
920.982
930.817
940.247
950.23
960.724
970.551
980.0764
990.0417



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12012


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000099 (human mesothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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