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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005276
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005276
|accession_numbers=CAGE;DRX008421;DRR009293;DRZ000718;DRZ002103;DRZ012068;DRZ013453
|accession_numbers_RNASeq=sRNA-Seq;DRX037232;DRR041598;DRZ007240
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:134369879..134369898,-!p2@PITX1!2.42!260.04!PITX1;;chr17:7493405..7493419,-!p1@SOX15!2.30!200.74!SOX15;;chr11:34642612..34642646,+!p1@EHF!2.27!187.02!EHF;;chr1:6479968..6479986,-!p1@HES2!2.13!135.17!HES2;;chr5:134369905..134369972,-!p1@PITX1!2.04!164.09!PITX1;;chr1:209979467..209979494,-!p1@IRF6!1.96!100.74!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.95!87.38!TP63;;chr6:1312325..1312340,+!p1@FOXQ1!1.90!124.40!FOXQ1;;chr1:209979411..209979433,-!p2@IRF6!1.77!57.83!IRF6;;chr13:73633131..73633149,+!p1@KLF5!1.74!541.99!KLF5;;chr17:80797886..80797906,-!p1@ZNF750!1.71!50.64!ZNF750;;chr1:201979703..201979721,+!p2@ELF3!1.63!41.53!ELF3;;chr17:7492684..7492778,-!p2@SOX15!1.59!77.81!SOX15;;chr6:10415276..10415341,-!p2@TFAP2A!1.57!44.29!TFAP2A;;chr15:101069113..101069169,-!p1@CERS3!1.57!36.00!CERS3;;chr1:201979743..201979762,+!p1@ELF3!1.57!35.82!ELF3;;chr15:83953397..83953425,-!p1@BNC1!1.54!38.77!BNC1;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.76!TFAP2A;;chr4:57547454..57547469,-!p1@HOPX!1.50!30.48!HOPX;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.36!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!36.00!ZNF385A;;chr8:10588010..10588030,-!p1@SOX7!1.35!21.55!SOX7;;chr14:37131058..37131139,+!p1@PAX9!1.29!18.60!PAX9;;chr5:2751762..2751784,-!p1@IRX2!1.29!18.42!IRX2;;chr2:176994408..176994492,+!p1@HOXD8!1.26!17.03!HOXD8;;chr7:27205136..27205164,-!p1@HOXA9!1.23!16.02!HOXA9;;chr11:34642656..34642667,+!p2@EHF!1.23!15.93!EHF;;chr2:46524897..46524911,+!p2@EPAS1!1.22!42.82!EPAS1;;chr2:176969228..176969260,+!p1@HOXD11!1.20!14.73!HOXD11;;chr17:8027418..8027432,-!p1@HES7!1.19!14.55!HES7;;chr13:73636252..73636307,+!p2@KLF5!1.18!16.39!KLF5;;chr12:54785054..54785072,-!p4@ZNF385A!1.17!15.56!ZNF385A;;chr8:102504651..102504683,+!p1@GRHL2!1.17!13.72!GRHL2;;chr2:10091815..10091864,+!p1@GRHL1!1.16!17.86!GRHL1;;chr7:27205106..27205134,-!p2@HOXA9!1.15!13.08!HOXA9;;chr6:10419768..10419819,-!p6@TFAP2A!1.14!12.80!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.13!33.15!ARNTL2;;chr1:24645832..24645853,+!p1@GRHL3!1.13!12.43!GRHL3;;chr18:3449720..3449749,+!p2@TGIF1!1.12!26.15!TGIF1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.11!11.97!TFCP2L1;;chr14:38064429..38064486,-!p1@FOXA1!1.11!11.97!FOXA1;;chr2:176969179..176969226,+!p2@HOXD11!1.10!11.69!HOXD11;;chr3:111314186..111314204,-!p1@ZBED2!1.10!11.51!ZBED2;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.15!DRAP1;;chr11:34645791..34645836,+!p3@EHF!1.08!11.14!EHF;;chr19:45908292..45908374,-!p1@PPP1R13L!1.05!91.44!PPP1R13L;;chr1:24645921..24645973,+!p2@GRHL3!1.04!9.94!GRHL3;;chr21:38071430..38071456,+!p1@SIM2!1.04!9.94!SIM2;;chr6:1312155..1312187,+!p2@FOXQ1!1.03!9.76!FOXQ1;;chr12:80084737..80084763,-!p3@PAWR!1.01!34.99!PAWR;;chr13:73636516..73636532,+!p3@KLF5!1.00!10.31!KLF5;;chr12:27485823..27485868,+!p2@ARNTL2!0.98!35.36!ARNTL2;;chr17:7492504..7492520,-!p3@SOX15!0.98!8.56!SOX15;;chr14:37051798..37051831,-!p1@NKX2-8!0.96!8.20!NKX2-8;;chr6:10412576..10412599,-!p5@TFAP2A!0.96!8.10!TFAP2A;;chr20:18038521..18038571,-!p1@OVOL2!0.96!8.10!OVOL2;;chr20:22565370..22565388,-!p2@FOXA2!0.95!7.83!FOXA2;;chr5:134369848..134369853,-!p6@PITX1!0.93!7.55!PITX1;;chr12:53625966..53626012,-!p2@RARG!0.92!19.89!RARG;;chrY:21906594..21906622,-!p1@KDM5D!0.90!7.00!KDM5D;;chr6:126102292..126102329,+!p3@NCOA7!0.89!23.30!NCOA7;;chr20:55204351..55204377,+!p1@TFAP2C!0.89!8.75!TFAP2C;;chr2:176969124..176969155,+!p5@HOXD11!0.89!6.81!HOXD11;;chr2:70142232..70142251,+!p1@MXD1!0.88!39.04!MXD1;;chr6:106546808..106546833,+!p3@PRDM1!0.88!8.38!PRDM1;;chr1:2461692..2461710,-!p1@HES5!0.88!6.63!HES5;;chr1:209979449..209979460,-!p3@IRF6!0.87!6.45!IRF6;;chr13:73636621..73636647,+!p4@KLF5!0.87!6.45!KLF5;;chr7:27224842..27224872,-!p1@HOXA11!0.86!6.26!HOXA11;;chr11:65554528..65554546,+!p1@OVOL1!0.86!6.17!OVOL1;;chr10:8096631..8096660,+!p1@GATA3!0.85!7.46!GATA3;;chr20:30193083..30193098,+!p1@ID1!0.84!511.69!ID1;;chr20:6748325..6748352,+!p1@BMP2!0.84!8.75!BMP2;;chr1:209979375..209979386,-!p4@IRF6!0.84!5.99!IRF6;;chr5:2751785..2751808,-!p2@IRX2!0.84!5.99!IRX2;;chr11:129245526..129245553,+!p1@BARX2!0.84!5.89!BARX2;;chr10:64018918..64018936,+!p2@ZNF365!0.83!5.71!ZNF365;;chr17:80797863..80797874,-!p2@ZNF750!0.83!5.71!ZNF750;;chr17:46806067..46806097,-!p1@HOXB13!0.82!5.62!HOXB13;;chr2:238600933..238600985,+!p3@LRRFIP1!0.81!31.95!LRRFIP1;;chr12:66218255..66218304,+!p3@HMGA2!0.80!15.29!HMGA2;;chr20:18038486..18038520,-!p2@OVOL2!0.80!5.34!OVOL2;;chr1:158979792..158979814,+!p2@IFI16!0.79!53.50!IFI16;;chr11:65686732..65686756,+!p2@DRAP1!0.79!23.76!DRAP1;;chr3:189507460..189507471,+!p3@TP63!0.79!5.16!TP63;;chr8:128748308..128748324,+!p2@MYC!0.78!154.24!MYC;;chr10:8095593..8095625,+!p3@GATA3!0.78!5.99!GATA3;;chr19:53193731..53193767,-!p1@ZNF83!0.77!48.34!ZNF83;;chr19:9811347..9811351,-!p1@ZNF812!0.77!4.88!ZNF812;;chr6:106534192..106534224,+!p1@PRDM1!0.76!14.46!PRDM1;;chr10:8096772..8096787,+!p2@GATA3!0.76!5.71!GATA3;;chrY:2803415..2803468,+!p1@ZFY!0.76!4.70!ZFY;;chr1:935398..935465,-!p2@HES4!0.75!10.22!HES4;;chr18:3449695..3449712,+!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002231;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000223
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor3.CNhs12014.11404-118D9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor3.CNhs12014.11404-118D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor3.CNhs12014.11404-118D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor3.CNhs12014.11404-118D9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%252c%2520donor3.CNhs12014.11404-118D9.hg38.nobarcode.ctss.bed.gz
|id=FF:11404-118D9
|id=FF:11404-118D9
|is_a=EFO:0002091;;FF:0000145
|is_a=EFO:0002091;;FF:0000145
|is_obsolete=
|is_obsolete=
|library_id=CNhs12014
|library_id_phase_based=2:CNhs12014
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11404
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.ACTTGA.11404
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11404
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.ACTTGA.11404
|name=Prostate Epithelial Cells, donor3
|name=Prostate Epithelial Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12014,LSID837,release011,COMPLETED
|profile_hcage=CNhs12014,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
|profile_srnaseq=SRhi10014,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 62: Line 82:
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|sample_category=primary cells
Line 85: Line 106:
|top_motifs=ZEB1:2.47551300271;TBX4,5:2.27338892747;TEF:2.23614868651;TP53:2.11598512574;SNAI1..3:2.05292403973;AIRE:1.93592790038;PDX1:1.64645834411;PPARG:1.60597114632;ONECUT1,2:1.59840226623;MYOD1:1.43637634928;FOXQ1:1.41516586047;ARID5B:1.32956224906;NKX2-3_NKX2-5:1.32859486824;VSX1,2:1.31560927177;NKX2-1,4:1.10740625858;bHLH_family:1.05580902478;FOXM1:0.93487056199;CDC5L:0.873769172589;LMO2:0.872616204717;FOX{I1,J2}:0.867891199211;EVI1:0.860967419114;PAX1,9:0.85790020162;POU1F1:0.837091886388;HOX{A4,D4}:0.836666040256;UFEwm:0.808253959525;ADNP_IRX_SIX_ZHX:0.789718531201;KLF4:0.760694925137;CRX:0.752633180486;TEAD1:0.684313958533;ZBTB16:0.645727627059;TFCP2:0.644833805817;ELK1,4_GABP{A,B1}:0.638038412897;SP1:0.631461680811;TOPORS:0.628797718105;FOXO1,3,4:0.621599848731;NKX2-2,8:0.614836786612;ALX1:0.606149502896;ZNF423:0.557480304999;ZNF384:0.545083136181;IKZF1:0.543938403688;HIF1A:0.518515786018;TFAP2{A,C}:0.496117016512;NR5A1,2:0.445917326941;XCPE1{core}:0.440482245668;ZIC1..3:0.430731031061;NR6A1:0.426174793608;ZNF148:0.413098458208;FOX{F1,F2,J1}:0.359582517541;PITX1..3:0.353232995971;TBP:0.333560920095;HLF:0.328792686865;NFIL3:0.319314361109;FOS_FOS{B,L1}_JUN{B,D}:0.305006686363;PAX4:0.299566958391;RREB1:0.29409424541;T:0.292275121426;ATF4:0.28897547828;GLI1..3:0.288054928838;RXR{A,B,G}:0.279464184398;NKX6-1,2:0.278741553804;SREBF1,2:0.264565015918;FOSL2:0.255286146878;ZBTB6:0.240892398816;GFI1B:0.215467133826;ALX4:0.211779840561;CDX1,2,4:0.196912912063;BACH2:0.173448376442;FOXN1:0.172875584733;HAND1,2:0.160064188168;IKZF2:0.158198465965;ZFP161:0.140080934407;ESR1:0.133783839836;MAZ:0.129344430988;CEBPA,B_DDIT3:0.103696910767;RBPJ:0.0780421531473;TFAP2B:0.0378221091731;GZF1:0.0337436091139;STAT5{A,B}:0.0236849112721;ATF2:0.0190675002496;NKX3-1:0.00941392858139;LHX3,4:0.00353651498165;PAX8:-0.00917802348204;NFE2:-0.0134690655099;ATF5_CREB3:-0.0178461611628;HNF4A_NR2F1,2:-0.0187208360781;FOXL1:-0.0345844998004;ZNF143:-0.0436912399482;BPTF:-0.0724087440148;MYFfamily:-0.0844743080409;POU6F1:-0.0919951435697;NR3C1:-0.115913162359;MTF1:-0.137116503155;SOX17:-0.143865839075;TLX1..3_NFIC{dimer}:-0.163368033215;PATZ1:-0.190320500881;MED-1{core}:-0.199321768715;NRF1:-0.206273130033;NKX3-2:-0.214026538982;FOXP1:-0.238256100206;TFAP4:-0.245873289272;FOXD3:-0.252019852932;PRDM1:-0.252154057402;REST:-0.253201150296;LEF1_TCF7_TCF7L1,2:-0.2639650353;PAX6:-0.273903799266;PAX2:-0.281969827969;HNF1A:-0.292702433844;EN1,2:-0.296720619551;NR1H4:-0.298471906947;CREB1:-0.299641984436;HOX{A5,B5}:-0.30503188184;GATA4:-0.309868778269;HSF1,2:-0.317231993689;TLX2:-0.319301291081;EGR1..3:-0.319657844238;ATF6:-0.321987494068;GTF2A1,2:-0.331012162868;POU2F1..3:-0.341433224509;MAFB:-0.346754686886;HOX{A6,A7,B6,B7}:-0.357247573199;HMX1:-0.362192281439;CUX2:-0.362790199779;SOX2:-0.370758683715;OCT4_SOX2{dimer}:-0.373431986636;RFX2..5_RFXANK_RFXAP:-0.375153907799;EBF1:-0.378505765349;GTF2I:-0.390006778747;SPZ1:-0.39172819388;SPI1:-0.402730698454;MTE{core}:-0.420746004443;PAX5:-0.422680002521;EP300:-0.424104036799;TFDP1:-0.426075472952;HMGA1,2:-0.440621374471;NANOG:-0.447897695896;AHR_ARNT_ARNT2:-0.450663909757;NFIX:-0.451872247553;SPIB:-0.455406701666;BREu{core}:-0.464828550282;NFKB1_REL_RELA:-0.468776029226;ELF1,2,4:-0.484978286129;ZNF238:-0.490807400248;IRF7:-0.493933384587;JUN:-0.504710052535;HIC1:-0.523993148035;SMAD1..7,9:-0.543311073701;NHLH1,2:-0.558370398343;STAT2,4,6:-0.563716970752;MYBL2:-0.564480969561;YY1:-0.580222749485;ESRRA:-0.58107906216;POU3F1..4:-0.584584322399;RXRA_VDR{dimer}:-0.602195398654;ETS1,2:-0.615047465978;RORA:-0.626655606114;DMAP1_NCOR{1,2}_SMARC:-0.647735132851;PBX1:-0.670741356851;GATA6:-0.703216349478;AR:-0.730024640651;TAL1_TCF{3,4,12}:-0.748182404967;FOXP3:-0.752977624917;PAX3,7:-0.75374419037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.754623419362;FOX{D1,D2}:-0.76135117992;NFE2L2:-0.845794619713;PRRX1,2:-0.846151450467;POU5F1:-0.849339630025;MYB:-0.85535992381;MZF1:-0.858088608228;MEF2{A,B,C,D}:-0.859200601195;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.885012994802;STAT1,3:-0.900918082361;SOX5:-0.93891899297;FOXA2:-0.942278715703;RUNX1..3:-0.956527518915;RFX1:-1.02083181355;NFE2L1:-1.02484929807;SRF:-1.03160986063;NFY{A,B,C}:-1.05650388309;HES1:-1.10227118488;E2F1..5:-1.13462411646;IRF1,2:-1.15857810931;GCM1,2:-1.1830622393;HOXA9_MEIS1:-1.19543172314;NFATC1..3:-1.20883178062;TGIF1:-1.23779894378;HBP1_HMGB_SSRP1_UBTF:-1.25605379664;SOX{8,9,10}:-1.27646217699;GFI1:-1.30148626372;DBP:-1.38498432217;XBP1:-1.71261828469;NANOG{mouse}:-1.90618123845
|top_motifs=ZEB1:2.47551300271;TBX4,5:2.27338892747;TEF:2.23614868651;TP53:2.11598512574;SNAI1..3:2.05292403973;AIRE:1.93592790038;PDX1:1.64645834411;PPARG:1.60597114632;ONECUT1,2:1.59840226623;MYOD1:1.43637634928;FOXQ1:1.41516586047;ARID5B:1.32956224906;NKX2-3_NKX2-5:1.32859486824;VSX1,2:1.31560927177;NKX2-1,4:1.10740625858;bHLH_family:1.05580902478;FOXM1:0.93487056199;CDC5L:0.873769172589;LMO2:0.872616204717;FOX{I1,J2}:0.867891199211;EVI1:0.860967419114;PAX1,9:0.85790020162;POU1F1:0.837091886388;HOX{A4,D4}:0.836666040256;UFEwm:0.808253959525;ADNP_IRX_SIX_ZHX:0.789718531201;KLF4:0.760694925137;CRX:0.752633180486;TEAD1:0.684313958533;ZBTB16:0.645727627059;TFCP2:0.644833805817;ELK1,4_GABP{A,B1}:0.638038412897;SP1:0.631461680811;TOPORS:0.628797718105;FOXO1,3,4:0.621599848731;NKX2-2,8:0.614836786612;ALX1:0.606149502896;ZNF423:0.557480304999;ZNF384:0.545083136181;IKZF1:0.543938403688;HIF1A:0.518515786018;TFAP2{A,C}:0.496117016512;NR5A1,2:0.445917326941;XCPE1{core}:0.440482245668;ZIC1..3:0.430731031061;NR6A1:0.426174793608;ZNF148:0.413098458208;FOX{F1,F2,J1}:0.359582517541;PITX1..3:0.353232995971;TBP:0.333560920095;HLF:0.328792686865;NFIL3:0.319314361109;FOS_FOS{B,L1}_JUN{B,D}:0.305006686363;PAX4:0.299566958391;RREB1:0.29409424541;T:0.292275121426;ATF4:0.28897547828;GLI1..3:0.288054928838;RXR{A,B,G}:0.279464184398;NKX6-1,2:0.278741553804;SREBF1,2:0.264565015918;FOSL2:0.255286146878;ZBTB6:0.240892398816;GFI1B:0.215467133826;ALX4:0.211779840561;CDX1,2,4:0.196912912063;BACH2:0.173448376442;FOXN1:0.172875584733;HAND1,2:0.160064188168;IKZF2:0.158198465965;ZFP161:0.140080934407;ESR1:0.133783839836;MAZ:0.129344430988;CEBPA,B_DDIT3:0.103696910767;RBPJ:0.0780421531473;TFAP2B:0.0378221091731;GZF1:0.0337436091139;STAT5{A,B}:0.0236849112721;ATF2:0.0190675002496;NKX3-1:0.00941392858139;LHX3,4:0.00353651498165;PAX8:-0.00917802348204;NFE2:-0.0134690655099;ATF5_CREB3:-0.0178461611628;HNF4A_NR2F1,2:-0.0187208360781;FOXL1:-0.0345844998004;ZNF143:-0.0436912399482;BPTF:-0.0724087440148;MYFfamily:-0.0844743080409;POU6F1:-0.0919951435697;NR3C1:-0.115913162359;MTF1:-0.137116503155;SOX17:-0.143865839075;TLX1..3_NFIC{dimer}:-0.163368033215;PATZ1:-0.190320500881;MED-1{core}:-0.199321768715;NRF1:-0.206273130033;NKX3-2:-0.214026538982;FOXP1:-0.238256100206;TFAP4:-0.245873289272;FOXD3:-0.252019852932;PRDM1:-0.252154057402;REST:-0.253201150296;LEF1_TCF7_TCF7L1,2:-0.2639650353;PAX6:-0.273903799266;PAX2:-0.281969827969;HNF1A:-0.292702433844;EN1,2:-0.296720619551;NR1H4:-0.298471906947;CREB1:-0.299641984436;HOX{A5,B5}:-0.30503188184;GATA4:-0.309868778269;HSF1,2:-0.317231993689;TLX2:-0.319301291081;EGR1..3:-0.319657844238;ATF6:-0.321987494068;GTF2A1,2:-0.331012162868;POU2F1..3:-0.341433224509;MAFB:-0.346754686886;HOX{A6,A7,B6,B7}:-0.357247573199;HMX1:-0.362192281439;CUX2:-0.362790199779;SOX2:-0.370758683715;OCT4_SOX2{dimer}:-0.373431986636;RFX2..5_RFXANK_RFXAP:-0.375153907799;EBF1:-0.378505765349;GTF2I:-0.390006778747;SPZ1:-0.39172819388;SPI1:-0.402730698454;MTE{core}:-0.420746004443;PAX5:-0.422680002521;EP300:-0.424104036799;TFDP1:-0.426075472952;HMGA1,2:-0.440621374471;NANOG:-0.447897695896;AHR_ARNT_ARNT2:-0.450663909757;NFIX:-0.451872247553;SPIB:-0.455406701666;BREu{core}:-0.464828550282;NFKB1_REL_RELA:-0.468776029226;ELF1,2,4:-0.484978286129;ZNF238:-0.490807400248;IRF7:-0.493933384587;JUN:-0.504710052535;HIC1:-0.523993148035;SMAD1..7,9:-0.543311073701;NHLH1,2:-0.558370398343;STAT2,4,6:-0.563716970752;MYBL2:-0.564480969561;YY1:-0.580222749485;ESRRA:-0.58107906216;POU3F1..4:-0.584584322399;RXRA_VDR{dimer}:-0.602195398654;ETS1,2:-0.615047465978;RORA:-0.626655606114;DMAP1_NCOR{1,2}_SMARC:-0.647735132851;PBX1:-0.670741356851;GATA6:-0.703216349478;AR:-0.730024640651;TAL1_TCF{3,4,12}:-0.748182404967;FOXP3:-0.752977624917;PAX3,7:-0.75374419037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.754623419362;FOX{D1,D2}:-0.76135117992;NFE2L2:-0.845794619713;PRRX1,2:-0.846151450467;POU5F1:-0.849339630025;MYB:-0.85535992381;MZF1:-0.858088608228;MEF2{A,B,C,D}:-0.859200601195;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.885012994802;STAT1,3:-0.900918082361;SOX5:-0.93891899297;FOXA2:-0.942278715703;RUNX1..3:-0.956527518915;RFX1:-1.02083181355;NFE2L1:-1.02484929807;SRF:-1.03160986063;NFY{A,B,C}:-1.05650388309;HES1:-1.10227118488;E2F1..5:-1.13462411646;IRF1,2:-1.15857810931;GCM1,2:-1.1830622393;HOXA9_MEIS1:-1.19543172314;NFATC1..3:-1.20883178062;TGIF1:-1.23779894378;HBP1_HMGB_SSRP1_UBTF:-1.25605379664;SOX{8,9,10}:-1.27646217699;GFI1:-1.30148626372;DBP:-1.38498432217;XBP1:-1.71261828469;NANOG{mouse}:-1.90618123845
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11404-118D9;search_select_hide=table117:FF:11404-118D9
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Prostate Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12014
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stageNA
sexmale
ageNA
cell typeepithelial cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005276
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12014 CAGE DRX008421 DRR009293
Accession ID Hg19

Library idBAMCTSS
CNhs12014 DRZ000718 DRZ002103
Accession ID Hg38

Library idBAMCTSS
CNhs12014 DRZ012068 DRZ013453
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005276
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.ACTTGA sRNA-Seq DRX037232 DRR041598
Accession ID Hg19

Library idBAMCTSS
SRhi10014.ACTTGA DRZ007240


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.258
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.459
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0734
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0383
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0505
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.413
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0383
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0384
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.542
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0484
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.046
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0383
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.52
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.173
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.424
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00977
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.54
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0768
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0117
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0734
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0383
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12014

Jaspar motifP-value
MA0002.20.00435
MA0003.10.58
MA0004.10.896
MA0006.10.0647
MA0007.10.833
MA0009.10.156
MA0014.10.196
MA0017.10.624
MA0018.20.0349
MA0019.10.965
MA0024.12.06762e-5
MA0025.10.675
MA0027.10.882
MA0028.10.0338
MA0029.10.783
MA0030.10.613
MA0031.10.234
MA0035.20.675
MA0038.14.54669e-4
MA0039.20.00676
MA0040.10.166
MA0041.10.844
MA0042.10.135
MA0043.10.788
MA0046.10.511
MA0047.20.156
MA0048.10.661
MA0050.12.43501e-13
MA0051.15.07681e-8
MA0052.15.37494e-4
MA0055.10.56
MA0057.10.0532
MA0058.10.939
MA0059.10.814
MA0060.16.80211e-10
MA0061.10.00341
MA0062.20.666
MA0065.20.306
MA0066.10.779
MA0067.10.242
MA0068.10.00158
MA0069.10.0364
MA0070.10.875
MA0071.10.692
MA0072.10.374
MA0073.10.609
MA0074.10.483
MA0076.10.243
MA0077.10.884
MA0078.10.716
MA0079.20.41
MA0080.28.45261e-9
MA0081.10.00465
MA0083.17.41346e-4
MA0084.10.0411
MA0087.10.141
MA0088.10.794
MA0090.10.0143
MA0091.10.114
MA0092.10.481
MA0093.10.992
MA0099.20.748
MA0100.10.0201
MA0101.18.31049e-5
MA0102.20.912
MA0103.12.90013e-11
MA0104.20.942
MA0105.10.0146
MA0106.19.91252e-10
MA0107.15.5015e-5
MA0108.20.00148
MA0111.10.537
MA0112.20.991
MA0113.10.393
MA0114.10.542
MA0115.10.81
MA0116.10.981
MA0117.10.96
MA0119.10.679
MA0122.10.274
MA0124.10.242
MA0125.10.284
MA0131.10.915
MA0135.10.522
MA0136.18.67369e-7
MA0137.20.00141
MA0138.20.701
MA0139.10.499
MA0140.10.0989
MA0141.10.751
MA0142.10.697
MA0143.10.678
MA0144.10.329
MA0145.10.0107
MA0146.10.107
MA0147.10.94
MA0148.10.0336
MA0149.10.166
MA0150.10.781
MA0152.10.595
MA0153.10.987
MA0154.10.291
MA0155.10.378
MA0156.11.21425e-4
MA0157.10.0831
MA0159.10.0977
MA0160.10.894
MA0162.10.394
MA0163.10.0351
MA0164.10.67
MA0258.10.581
MA0259.10.952



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12014

Novel motifP-value
10.339
100.722
1000.644
1010.531
1020.213
1030.593
1040.873
1050.656
1060.218
1070.197
1080.0328
1090.0066
110.708
1100.254
1110.0885
1120.162
1130.488
1140.521
1150.0465
1160.912
1170.187
1180.81
1190.249
120.865
1200.00829
1210.167
1220.782
1230.817
1240.0399
1250.725
1260.41
1270.33
1280.96
1290.115
130.129
1300.0257
1310.852
1320.191
1339.63718e-4
1340.0801
1350.5
1360.0198
1370.653
1380.404
1390.027
140.861
1400.0916
1410.459
1420.469
1430.193
1440.18
1450.635
1460.319
1470.662
1480.261
1490.684
150.96
1500.665
1510.482
1520.0365
1530.331
1540.461
1550.637
1560.623
1570.461
1580.912
1590.855
160.0499
1600.443
1610.342
1620.476
1630.786
1640.0154
1650.733
1660.51
1670.682
1680.91
1690.103
170.326
180.179
190.934
20.109
200.312
210.0752
220.7
230.362
240.22
250.603
260.516
270.856
280.615
290.293
30.39
300.382
310.774
320.391
330.586
340.168
350.27
360.249
370.219
380.418
390.46
40.549
400.21
410.142
420.983
430.796
440.107
450.439
460.603
470.379
480.429
490.657
50.457
500.666
510.979
520.562
530.449
540.496
550.355
560.41
570.211
580.939
590.532
60.298
600.601
610.239
620.573
630.172
640.627
650.367
660.551
670.416
680.136
690.174
70.808
700.0039
710.932
720.447
730.0133
740.0736
750.338
760.567
770.0683
780.0107
790.763
80.67
800.0342
810.876
820.356
830.284
840.474
850.46
860.783
870.123
880.702
890.0841
90.24
900.859
910.511
920.377
930.685
940.885
950.0523
960.249
970.246
980.872
990.319



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12014


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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