FF:11433-118H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004781 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004781 | ||
|accession_numbers=CAGE;DRX008474;DRR009346;DRZ000771;DRZ002156;DRZ012121;DRZ013506 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036997;DRR041363;DRZ007005 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001529,UBERON:0004535,UBERON:0004571,UBERON:0007204,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002589 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000169 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.61!39.65!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.56!35.35!SOX17;;chr8:106330656..106330684,+!p1@ZFPM2!1.36!56.68!ZFPM2;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr11:34642612..34642646,+!p1@EHF!1.25!16.89!EHF;;chr11:65686802..65686818,+!p6@DRAP1!1.20!25.62!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.22!GATA6;;chr8:106330696..106330719,+!p2@ZFPM2!1.16!17.03!ZFPM2;;chr6:126240380..126240430,+!p2@NCOA7!1.15!34.35!NCOA7;;chr18:19749386..19749404,+!p2@GATA6!1.07!15.60!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.07!10.88!HAND2;;chr7:1577899..1577943,+!p3@MAFK!1.06!10.59!MAFK;;chr12:80085061..80085119,-!p6@PAWR!1.04!15.89!PAWR;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.73!HEY2;;chr21:38071430..38071456,+!p1@SIM2!1.01!9.30!SIM2;;chr9:35732647..35732678,+!p2@CREB3!0.98!49.23!CREB3;;chr6:126240463..126240489,+!p6@NCOA7!0.98!9.59!NCOA7;;chr11:65686732..65686756,+!p2@DRAP1!0.97!36.21!DRAP1;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr12:66218836..66218888,+!p1@HMGA2!0.95!77.00!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.95!10.30!NCOA7;;chr12:66218904..66218913,+!p11@HMGA2!0.91!7.16!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.91!7.16!RARB;;chr9:35732514..35732530,+!p5@CREB3!0.88!9.59!CREB3;;chr6:10415276..10415341,-!p2@TFAP2A!0.88!8.16!TFAP2A;;chr3:141087393..141087426,+!p3@ZBTB38!0.86!25.91!ZBTB38;;chr12:66218598..66218645,+!p2@HMGA2!0.85!30.06!HMGA2;;chr3:25469815..25469866,+!p3@RARB!0.85!6.15!RARB;;chr8:106330543..106330554,+!p4@ZFPM2!0.85!6.01!ZFPM2;;chr12:66218923..66218934,+!p14@HMGA2!0.84!5.87!HMGA2;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.48!DRAP1;;chr15:67458861..67458879,+!p17@SMAD3!0.81!5.44!SMAD3;;chr12:80085120..80085156,-!p14@PAWR!0.79!5.15!PAWR;;chr1:151032782..151032801,+!p4@MLLT11!0.77!10.45!MLLT11;;chr11:65687882..65687902,+!p10@DRAP1!0.77!7.01!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!0.75!5.44!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.75!5.30!MSC;;chr2:66662281..66662308,+!p1@MEIS1!0.74!17.17!MEIS1;;chr6:126102292..126102329,+!p3@NCOA7!0.72!15.46!NCOA7;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr9:35732592..35732640,+!p1@CREB3!0.71!61.54!CREB3;;chr8:72756667..72756736,-!p2@MSC!0.71!6.87!MSC;;chr17:46132044..46132080,+!p4@NFE2L1!0.71!4.15!NFE2L1;;chr8:72756267..72756296,-!p4@MSC!0.70!6.15!MSC;;chr12:80084137..80084165,-!p10@PAWR!0.70!5.44!PAWR;;chr1:151032739..151032748,+!p6@MLLT11!0.70!5.15!MLLT11;;chr6:126240356..126240379,+!p7@NCOA7!0.70!5.01!NCOA7;;chr11:65687158..65687216,+!p4@DRAP1!0.69!25.48!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.44!ZFP106;;chr1:8938709..8938720,-!p3@ENO1!0.68!210.11!ENO1;;chr3:178789522..178789564,-!p2@ZMAT3!0.68!31.63!ZMAT3;;chr1:151032860..151032918,+!p1@MLLT11!0.66!49.38!MLLT11;;chr9:35732561..35732587,+!p3@CREB3!0.66!17.17!CREB3;;chr9:16705069..16705086,-!p3@BNC2!0.66!3.58!BNC2;;chr3:141087454..141087465,+!p19@ZBTB38!0.66!3.58!ZBTB38;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.58!SMARCD3;;chr2:85980951..85981004,+!p1@ATOH8!0.65!6.01!ATOH8;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.43!FOXC2;;chr3:168865194..168865245,-!p3@MECOM!0.64!4.58!MECOM;;chr1:23885981..23886002,-!p1@ID3!0.63!680.85!ID3;;chr8:145159846..145159889,+!p6@MAF1!0.63!5.01!MAF1;;chr1:170633348..170633399,+!p2@PRRX1!0.63!4.72!PRRX1;;chr12:77459306..77459365,-!p1@E2F7!0.62!47.23!E2F7;;chr12:80084167..80084197,-!p5@PAWR!0.62!8.44!PAWR;;chr1:151032922..151032951,+!p2@MLLT11!0.62!5.72!MLLT11;;chr15:67418177..67418204,+!p9@SMAD3!0.62!3.15!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.62!3.15!SMAD3;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.15!ATOH8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.61!45.08!ZC3H12A;;chr14:62162285..62162296,+!p3@HIF1A!0.61!19.04!HIF1A;;chr3:168864315..168864339,-!p2@MECOM!0.61!5.58!MECOM;;chr1:170632959..170632987,+!p4@PRRX1!0.61!3.43!PRRX1;;chr15:67418047..67418093,+!p4@SMAD3!0.60!4.01!SMAD3;;chr15:83953397..83953425,-!p1@BNC1!0.60!3.58!BNC1;;chr1:170632285..170632309,+!p1@PRRX1!0.60!3.43!PRRX1;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.01!SMAD3;;chr17:46126136..46126152,+!p1@NFE2L1!0.59!181.48!NFE2L1;;chr22:38598086..38598105,+!p1@MAFF!0.59!37.36!MAFF;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!8.87!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.59!8.44!TWIST1;;chr4:174451350..174451363,-!p3@HAND2!0.59!2.86!HAND2;;chr14:62162258..62162269,+!p2@HIF1A!0.58!32.92!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!0.57!7.73!FOXC2;;chr3:157823517..157823562,-!p1@SHOX2!0.57!3.01!SHOX2;;chr2:85981073..85981091,+!p5@ATOH8!0.57!2.72!ATOH8;;chr6:10412600..10412637,-!p1@TFAP2A!0.56!4.87!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.55!34.35!AHR;;chr7:17338324..17338341,+!p3@AHR!0.55!10.30!AHR;;chr5:139487608..139487663,+!p3@PURA!0.55!6.30!PURA;;chr11:65687243..65687276,+!p8@DRAP1!0.55!3.72!DRAP1;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.87!MAZ;;chr3:170076314..170076334,+!p2@SKIL!0.54!3.43!SKIL;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.15!POU2F3;;chr3:169381420..169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| |expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.61!39.65!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.56!35.35!SOX17;;chr8:106330656..106330684,+!p1@ZFPM2!1.36!56.68!ZFPM2;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr11:34642612..34642646,+!p1@EHF!1.25!16.89!EHF;;chr11:65686802..65686818,+!p6@DRAP1!1.20!25.62!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.22!GATA6;;chr8:106330696..106330719,+!p2@ZFPM2!1.16!17.03!ZFPM2;;chr6:126240380..126240430,+!p2@NCOA7!1.15!34.35!NCOA7;;chr18:19749386..19749404,+!p2@GATA6!1.07!15.60!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.07!10.88!HAND2;;chr7:1577899..1577943,+!p3@MAFK!1.06!10.59!MAFK;;chr12:80085061..80085119,-!p6@PAWR!1.04!15.89!PAWR;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.73!HEY2;;chr21:38071430..38071456,+!p1@SIM2!1.01!9.30!SIM2;;chr9:35732647..35732678,+!p2@CREB3!0.98!49.23!CREB3;;chr6:126240463..126240489,+!p6@NCOA7!0.98!9.59!NCOA7;;chr11:65686732..65686756,+!p2@DRAP1!0.97!36.21!DRAP1;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr12:66218836..66218888,+!p1@HMGA2!0.95!77.00!HMGA2;;chr6:126240442..126240459,+!p4@NCOA7!0.95!10.30!NCOA7;;chr12:66218904..66218913,+!p11@HMGA2!0.91!7.16!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.91!7.16!RARB;;chr9:35732514..35732530,+!p5@CREB3!0.88!9.59!CREB3;;chr6:10415276..10415341,-!p2@TFAP2A!0.88!8.16!TFAP2A;;chr3:141087393..141087426,+!p3@ZBTB38!0.86!25.91!ZBTB38;;chr12:66218598..66218645,+!p2@HMGA2!0.85!30.06!HMGA2;;chr3:25469815..25469866,+!p3@RARB!0.85!6.15!RARB;;chr8:106330543..106330554,+!p4@ZFPM2!0.85!6.01!ZFPM2;;chr12:66218923..66218934,+!p14@HMGA2!0.84!5.87!HMGA2;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.48!DRAP1;;chr15:67458861..67458879,+!p17@SMAD3!0.81!5.44!SMAD3;;chr12:80085120..80085156,-!p14@PAWR!0.79!5.15!PAWR;;chr1:151032782..151032801,+!p4@MLLT11!0.77!10.45!MLLT11;;chr11:65687882..65687902,+!p10@DRAP1!0.77!7.01!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!0.75!5.44!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.75!5.30!MSC;;chr2:66662281..66662308,+!p1@MEIS1!0.74!17.17!MEIS1;;chr6:126102292..126102329,+!p3@NCOA7!0.72!15.46!NCOA7;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr9:35732592..35732640,+!p1@CREB3!0.71!61.54!CREB3;;chr8:72756667..72756736,-!p2@MSC!0.71!6.87!MSC;;chr17:46132044..46132080,+!p4@NFE2L1!0.71!4.15!NFE2L1;;chr8:72756267..72756296,-!p4@MSC!0.70!6.15!MSC;;chr12:80084137..80084165,-!p10@PAWR!0.70!5.44!PAWR;;chr1:151032739..151032748,+!p6@MLLT11!0.70!5.15!MLLT11;;chr6:126240356..126240379,+!p7@NCOA7!0.70!5.01!NCOA7;;chr11:65687158..65687216,+!p4@DRAP1!0.69!25.48!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.44!ZFP106;;chr1:8938709..8938720,-!p3@ENO1!0.68!210.11!ENO1;;chr3:178789522..178789564,-!p2@ZMAT3!0.68!31.63!ZMAT3;;chr1:151032860..151032918,+!p1@MLLT11!0.66!49.38!MLLT11;;chr9:35732561..35732587,+!p3@CREB3!0.66!17.17!CREB3;;chr9:16705069..16705086,-!p3@BNC2!0.66!3.58!BNC2;;chr3:141087454..141087465,+!p19@ZBTB38!0.66!3.58!ZBTB38;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.58!SMARCD3;;chr2:85980951..85981004,+!p1@ATOH8!0.65!6.01!ATOH8;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.43!FOXC2;;chr3:168865194..168865245,-!p3@MECOM!0.64!4.58!MECOM;;chr1:23885981..23886002,-!p1@ID3!0.63!680.85!ID3;;chr8:145159846..145159889,+!p6@MAF1!0.63!5.01!MAF1;;chr1:170633348..170633399,+!p2@PRRX1!0.63!4.72!PRRX1;;chr12:77459306..77459365,-!p1@E2F7!0.62!47.23!E2F7;;chr12:80084167..80084197,-!p5@PAWR!0.62!8.44!PAWR;;chr1:151032922..151032951,+!p2@MLLT11!0.62!5.72!MLLT11;;chr15:67418177..67418204,+!p9@SMAD3!0.62!3.15!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.62!3.15!SMAD3;;chr2:85981107..85981120,+!p3@ATOH8!0.62!3.15!ATOH8;;chr1:37940170..37940190,+!p1@ZC3H12A!0.61!45.08!ZC3H12A;;chr14:62162285..62162296,+!p3@HIF1A!0.61!19.04!HIF1A;;chr3:168864315..168864339,-!p2@MECOM!0.61!5.58!MECOM;;chr1:170632959..170632987,+!p4@PRRX1!0.61!3.43!PRRX1;;chr15:67418047..67418093,+!p4@SMAD3!0.60!4.01!SMAD3;;chr15:83953397..83953425,-!p1@BNC1!0.60!3.58!BNC1;;chr1:170632285..170632309,+!p1@PRRX1!0.60!3.43!PRRX1;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.01!SMAD3;;chr17:46126136..46126152,+!p1@NFE2L1!0.59!181.48!NFE2L1;;chr22:38598086..38598105,+!p1@MAFF!0.59!37.36!MAFF;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!8.87!ARNTL2;;chr7:19157043..19157088,-!p2@TWIST1!0.59!8.44!TWIST1;;chr4:174451350..174451363,-!p3@HAND2!0.59!2.86!HAND2;;chr14:62162258..62162269,+!p2@HIF1A!0.58!32.92!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!0.57!7.73!FOXC2;;chr3:157823517..157823562,-!p1@SHOX2!0.57!3.01!SHOX2;;chr2:85981073..85981091,+!p5@ATOH8!0.57!2.72!ATOH8;;chr6:10412600..10412637,-!p1@TFAP2A!0.56!4.87!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.55!34.35!AHR;;chr7:17338324..17338341,+!p3@AHR!0.55!10.30!AHR;;chr5:139487608..139487663,+!p3@PURA!0.55!6.30!PURA;;chr11:65687243..65687276,+!p8@DRAP1!0.55!3.72!DRAP1;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.87!MAZ;;chr3:170076314..170076334,+!p2@SKIL!0.54!3.43!SKIL;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.15!POU2F3;;chr3:169381420..169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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002589;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor3.CNhs12043.11433-118H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11433-118H2 | |id=FF:11433-118H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000169 | ||
|is_obsolete= | |||
|library_id=CNhs12043 | |||
|library_id_phase_based=2:CNhs12043 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11433 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TAGCTT.11433 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11433 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TAGCTT.11433 | |||
|name=Smooth Muscle Cells - Brachiocephalic, donor3 | |name=Smooth Muscle Cells - Brachiocephalic, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12043,LSID838,release011,COMPLETED | |profile_hcage=CNhs12043,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118H2 | |rna_tube_id=118H2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.TAGCTT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.90964009118239e-217!GO:0005737;cytoplasm;7.82017346646986e-201!GO:0043226;organelle;4.6224600936759e-164!GO:0043229;intracellular organelle;1.08324953491624e-163!GO:0043231;intracellular membrane-bound organelle;2.85228654497267e-161!GO:0043227;membrane-bound organelle;4.72764108855116e-161!GO:0044444;cytoplasmic part;9.19742115623753e-146!GO:0044422;organelle part;2.90771312077755e-127!GO:0044446;intracellular organelle part;9.33892556473257e-126!GO:0032991;macromolecular complex;7.22222993033176e-91!GO:0030529;ribonucleoprotein complex;7.17240433102659e-80!GO:0044238;primary metabolic process;8.15940738522165e-78!GO:0044237;cellular metabolic process;3.02661732613647e-77!GO:0005515;protein binding;8.3965194864274e-73!GO:0005739;mitochondrion;2.96562604250956e-70!GO:0043170;macromolecule metabolic process;4.29477590954813e-69!GO:0043233;organelle lumen;5.04593720569433e-63!GO:0031974;membrane-enclosed lumen;5.04593720569433e-63!GO:0003723;RNA binding;1.14067296501993e-59!GO:0019538;protein metabolic process;5.92514852544122e-59!GO:0031090;organelle membrane;3.14153088721705e-55!GO:0044428;nuclear part;3.21516226988969e-53!GO:0006412;translation;4.63820706522586e-53!GO:0044260;cellular macromolecule metabolic process;5.21074879721672e-53!GO:0005840;ribosome;5.63189416038521e-53!GO:0044267;cellular protein metabolic process;1.37606025779815e-52!GO:0015031;protein transport;2.21985575907795e-49!GO:0005634;nucleus;6.83992473468516e-48!GO:0003735;structural constituent of ribosome;7.51935869896539e-48!GO:0044429;mitochondrial part;7.51935869896539e-48!GO:0033036;macromolecule localization;2.90406003781732e-47!GO:0009058;biosynthetic process;2.92660161446078e-46!GO:0045184;establishment of protein localization;6.4958448710856e-46!GO:0043234;protein complex;6.92500477383058e-46!GO:0008104;protein localization;4.08338468840957e-45!GO:0016043;cellular component organization and biogenesis;2.30437220191276e-44!GO:0009059;macromolecule biosynthetic process;2.57110218464955e-43!GO:0044249;cellular biosynthetic process;2.38029618531629e-42!GO:0005829;cytosol;1.64759615797703e-41!GO:0033279;ribosomal subunit;2.04806478553085e-41!GO:0031967;organelle envelope;2.34778102221987e-40!GO:0031975;envelope;5.81077554663332e-40!GO:0006396;RNA processing;7.04780673683745e-38!GO:0046907;intracellular transport;3.30367181358548e-37!GO:0031981;nuclear lumen;8.811556537129e-34!GO:0043283;biopolymer metabolic process;9.4016691473991e-33!GO:0005740;mitochondrial envelope;2.79376072121509e-32!GO:0006886;intracellular protein transport;3.51338602504433e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.15357025783647e-31!GO:0031966;mitochondrial membrane;1.82434123919136e-30!GO:0019866;organelle inner membrane;2.88849381314689e-29!GO:0016071;mRNA metabolic process;2.59748784124358e-28!GO:0005743;mitochondrial inner membrane;7.45216181678873e-28!GO:0065003;macromolecular complex assembly;1.61286454856483e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.24015054257631e-27!GO:0008380;RNA splicing;2.3063896512131e-27!GO:0010467;gene expression;1.66814506346317e-26!GO:0006996;organelle organization and biogenesis;5.89706474238823e-26!GO:0043228;non-membrane-bound organelle;7.57544537904867e-26!GO:0043232;intracellular non-membrane-bound organelle;7.57544537904867e-26!GO:0006397;mRNA processing;6.22473820581132e-25!GO:0044445;cytosolic part;1.18714976544557e-24!GO:0051649;establishment of cellular localization;3.82809388092445e-24!GO:0022607;cellular component assembly;4.07894181636473e-24!GO:0006119;oxidative phosphorylation;4.30449405623984e-24!GO:0051641;cellular localization;7.00994488323797e-24!GO:0005783;endoplasmic reticulum;1.59119329361972e-23!GO:0044455;mitochondrial membrane part;5.0639917720206e-23!GO:0015934;large ribosomal subunit;8.50248911074764e-23!GO:0006457;protein folding;1.15338731935907e-22!GO:0012505;endomembrane system;4.76993179077016e-22!GO:0000166;nucleotide binding;8.44685958987361e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.44685958987361e-22!GO:0016462;pyrophosphatase activity;2.1345405094981e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.40761987812803e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;4.8972022978559e-21!GO:0005794;Golgi apparatus;1.06695287798608e-20!GO:0017111;nucleoside-triphosphatase activity;1.21539059339612e-20!GO:0005654;nucleoplasm;6.94014226466127e-20!GO:0015935;small ribosomal subunit;1.11050469818779e-19!GO:0006512;ubiquitin cycle;2.34975310521422e-19!GO:0005746;mitochondrial respiratory chain;6.28960358547526e-19!GO:0016874;ligase activity;6.41090691957958e-19!GO:0005681;spliceosome;6.53358934361179e-19!GO:0031980;mitochondrial lumen;9.28100046547989e-19!GO:0005759;mitochondrial matrix;9.28100046547989e-19!GO:0044432;endoplasmic reticulum part;6.87331579319438e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;8.3231926392863e-18!GO:0019941;modification-dependent protein catabolic process;1.62070995075746e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.62070995075746e-17!GO:0044257;cellular protein catabolic process;2.12460123404615e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.86180380220619e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.75306549298922e-17!GO:0044265;cellular macromolecule catabolic process;1.15421202428561e-16!GO:0032553;ribonucleotide binding;1.16816898682679e-16!GO:0032555;purine ribonucleotide binding;1.16816898682679e-16!GO:0043412;biopolymer modification;1.24082279325878e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.48513640846844e-16!GO:0003954;NADH dehydrogenase activity;1.48513640846844e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.48513640846844e-16!GO:0017076;purine nucleotide binding;1.53518749460157e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.72437453922073e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.75840075425899e-16!GO:0022618;protein-RNA complex assembly;2.13111085399412e-16!GO:0043285;biopolymer catabolic process;2.16590990577821e-16!GO:0051186;cofactor metabolic process;2.17647128556458e-16!GO:0048193;Golgi vesicle transport;4.56799833520176e-16!GO:0044451;nucleoplasm part;5.04044768290589e-16!GO:0030163;protein catabolic process;6.51458916603728e-16!GO:0048770;pigment granule;8.72945158716223e-16!GO:0042470;melanosome;8.72945158716223e-16!GO:0006464;protein modification process;1.2719262304526e-15!GO:0006605;protein targeting;1.58884839627054e-15!GO:0006259;DNA metabolic process;1.62172289995149e-15!GO:0009057;macromolecule catabolic process;1.66543303601691e-15!GO:0051082;unfolded protein binding;1.78809511825734e-15!GO:0005730;nucleolus;2.76857549098385e-15!GO:0008135;translation factor activity, nucleic acid binding;3.10180878517047e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.21388291507064e-15!GO:0042773;ATP synthesis coupled electron transport;8.21388291507064e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.09024480324343e-14!GO:0045271;respiratory chain complex I;1.09024480324343e-14!GO:0005747;mitochondrial respiratory chain complex I;1.09024480324343e-14!GO:0016192;vesicle-mediated transport;1.12947738545903e-14!GO:0005761;mitochondrial ribosome;1.22352325269387e-14!GO:0000313;organellar ribosome;1.22352325269387e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.28503623487769e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.36013151500842e-14!GO:0044248;cellular catabolic process;2.03197565883912e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.94386667740523e-14!GO:0009055;electron carrier activity;4.24901414657736e-14!GO:0007049;cell cycle;1.75944488463298e-13!GO:0008134;transcription factor binding;2.49864563839657e-13!GO:0005524;ATP binding;7.7789806392837e-13!GO:0043687;post-translational protein modification;8.73113056719309e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.40057528099246e-12!GO:0006732;coenzyme metabolic process;1.78591150208475e-12!GO:0032559;adenyl ribonucleotide binding;1.88797887979465e-12!GO:0012501;programmed cell death;3.0819499000606e-12!GO:0030554;adenyl nucleotide binding;3.30479522588674e-12!GO:0005789;endoplasmic reticulum membrane;4.47825208145685e-12!GO:0006915;apoptosis;6.991721310622e-12!GO:0005793;ER-Golgi intermediate compartment;1.19404813302478e-11!GO:0042254;ribosome biogenesis and assembly;1.59474467817422e-11!GO:0003743;translation initiation factor activity;1.65372407897741e-11!GO:0008639;small protein conjugating enzyme activity;3.14005391002006e-11!GO:0006413;translational initiation;5.0522804111174e-11!GO:0004842;ubiquitin-protein ligase activity;6.74799216518261e-11!GO:0009259;ribonucleotide metabolic process;6.9498069278266e-11!GO:0019787;small conjugating protein ligase activity;1.06870913277233e-10!GO:0003676;nucleic acid binding;1.1241515762857e-10!GO:0008219;cell death;1.7897302808235e-10!GO:0016265;death;1.7897302808235e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.0620807440787e-10!GO:0008565;protein transporter activity;2.33701099011404e-10!GO:0006163;purine nucleotide metabolic process;2.58486290395216e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.20623467086654e-10!GO:0009150;purine ribonucleotide metabolic process;3.87800419231875e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.87800419231875e-10!GO:0000375;RNA splicing, via transesterification reactions;3.87800419231875e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.87800419231875e-10!GO:0022402;cell cycle process;4.59976628021878e-10!GO:0016881;acid-amino acid ligase activity;7.45537677062679e-10!GO:0031965;nuclear membrane;1.09179352933164e-09!GO:0016887;ATPase activity;1.2201422843974e-09!GO:0003924;GTPase activity;1.25808560281638e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.3278282874069e-09!GO:0009260;ribonucleotide biosynthetic process;1.41003397172421e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.48162448522829e-09!GO:0048523;negative regulation of cellular process;1.50957321159203e-09!GO:0006446;regulation of translational initiation;1.52845573621332e-09!GO:0006164;purine nucleotide biosynthetic process;1.57739371038349e-09!GO:0006974;response to DNA damage stimulus;1.97456857956661e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.97898011534083e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.28175586259294e-09!GO:0006913;nucleocytoplasmic transport;2.65739279321351e-09!GO:0005635;nuclear envelope;2.75107455217548e-09!GO:0009141;nucleoside triphosphate metabolic process;2.75291560645593e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.78358251751789e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.78358251751789e-09!GO:0044453;nuclear membrane part;2.87647476286784e-09!GO:0042623;ATPase activity, coupled;2.98186772363493e-09!GO:0009056;catabolic process;3.88475587726469e-09!GO:0030120;vesicle coat;3.88475587726469e-09!GO:0030662;coated vesicle membrane;3.88475587726469e-09!GO:0051188;cofactor biosynthetic process;4.61560617348527e-09!GO:0044431;Golgi apparatus part;4.81624741758824e-09!GO:0051169;nuclear transport;5.02084619459104e-09!GO:0000278;mitotic cell cycle;5.03708989941009e-09!GO:0009142;nucleoside triphosphate biosynthetic process;6.89237259473775e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.89237259473775e-09!GO:0006399;tRNA metabolic process;1.09490366746268e-08!GO:0015986;ATP synthesis coupled proton transport;1.18552654341497e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18552654341497e-08!GO:0005768;endosome;1.29171222730294e-08!GO:0017038;protein import;1.36460630648955e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.50195252877038e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.50195252877038e-08!GO:0009060;aerobic respiration;1.63549169224934e-08!GO:0005788;endoplasmic reticulum lumen;1.96215228554668e-08!GO:0006461;protein complex assembly;1.96891773396262e-08!GO:0016491;oxidoreductase activity;2.06384061141281e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.72292053501114e-08!GO:0051246;regulation of protein metabolic process;3.05315345857213e-08!GO:0019829;cation-transporting ATPase activity;3.76813141504034e-08!GO:0048475;coated membrane;3.83680392099553e-08!GO:0030117;membrane coat;3.83680392099553e-08!GO:0046034;ATP metabolic process;3.92679026270942e-08!GO:0048519;negative regulation of biological process;4.83605118167113e-08!GO:0003712;transcription cofactor activity;4.89667873248877e-08!GO:0006281;DNA repair;5.35993366052677e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.4575742979487e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.4575742979487e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.4575742979487e-08!GO:0045333;cellular respiration;7.87166108109605e-08!GO:0043038;amino acid activation;8.66515292440097e-08!GO:0006418;tRNA aminoacylation for protein translation;8.66515292440097e-08!GO:0043039;tRNA aminoacylation;8.66515292440097e-08!GO:0043067;regulation of programmed cell death;1.21744840451275e-07!GO:0065002;intracellular protein transport across a membrane;1.28736727088959e-07!GO:0007005;mitochondrion organization and biogenesis;1.29779368781145e-07!GO:0016070;RNA metabolic process;1.7607444164057e-07!GO:0006754;ATP biosynthetic process;1.90000879308808e-07!GO:0006753;nucleoside phosphate metabolic process;1.90000879308808e-07!GO:0005643;nuclear pore;1.90985729656255e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.90985729656255e-07!GO:0042981;regulation of apoptosis;2.04192429291726e-07!GO:0006793;phosphorus metabolic process;2.15723078082136e-07!GO:0006796;phosphate metabolic process;2.15723078082136e-07!GO:0008026;ATP-dependent helicase activity;2.55670522765956e-07!GO:0051726;regulation of cell cycle;2.55670522765956e-07!GO:0000074;regulation of progression through cell cycle;2.72154688670826e-07!GO:0043069;negative regulation of programmed cell death;2.82401670375676e-07!GO:0006364;rRNA processing;3.03793191017046e-07!GO:0016740;transferase activity;3.10815798731899e-07!GO:0009108;coenzyme biosynthetic process;3.82726328220438e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.043534285198e-07!GO:0009117;nucleotide metabolic process;4.16538529665421e-07!GO:0006916;anti-apoptosis;4.43286201165156e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.00193752943208e-07!GO:0016072;rRNA metabolic process;5.00193752943208e-07!GO:0016604;nuclear body;6.02933772757776e-07!GO:0005525;GTP binding;6.04885761511249e-07!GO:0051187;cofactor catabolic process;6.64204328959636e-07!GO:0000139;Golgi membrane;7.03770849016348e-07!GO:0006099;tricarboxylic acid cycle;7.21009512825577e-07!GO:0046356;acetyl-CoA catabolic process;7.21009512825577e-07!GO:0043066;negative regulation of apoptosis;7.69871177242753e-07!GO:0004386;helicase activity;7.88349246017137e-07!GO:0016787;hydrolase activity;7.94701322087974e-07!GO:0032446;protein modification by small protein conjugation;8.96687604954879e-07!GO:0009719;response to endogenous stimulus;1.04644534280518e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.06710158775104e-06!GO:0016567;protein ubiquitination;1.35512826786346e-06!GO:0009109;coenzyme catabolic process;1.51692575770857e-06!GO:0016310;phosphorylation;1.55788748388665e-06!GO:0045259;proton-transporting ATP synthase complex;1.57137386544154e-06!GO:0005770;late endosome;1.68308361203283e-06!GO:0006091;generation of precursor metabolites and energy;2.00512016799865e-06!GO:0046930;pore complex;2.13942540885454e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.38345517273075e-06!GO:0016853;isomerase activity;2.68398387751159e-06!GO:0006084;acetyl-CoA metabolic process;2.80254497773689e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.80254497773689e-06!GO:0000151;ubiquitin ligase complex;2.84347028314583e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.39818182097669e-06!GO:0006752;group transfer coenzyme metabolic process;3.53494954825079e-06!GO:0044440;endosomal part;3.53494954825079e-06!GO:0010008;endosome membrane;3.53494954825079e-06!GO:0032561;guanyl ribonucleotide binding;3.56163871475669e-06!GO:0019001;guanyl nucleotide binding;3.56163871475669e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.80951071765279e-06!GO:0065004;protein-DNA complex assembly;3.98538674315754e-06!GO:0005667;transcription factor complex;4.55547839739293e-06!GO:0031988;membrane-bound vesicle;4.72592948190308e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.98342675296596e-06!GO:0016779;nucleotidyltransferase activity;5.14198691929921e-06!GO:0005798;Golgi-associated vesicle;5.14198691929921e-06!GO:0008654;phospholipid biosynthetic process;6.1068605113222e-06!GO:0000087;M phase of mitotic cell cycle;7.11125712708821e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.04654046896783e-06!GO:0005762;mitochondrial large ribosomal subunit;8.29812612101246e-06!GO:0000315;organellar large ribosomal subunit;8.29812612101246e-06!GO:0007067;mitosis;8.43892425199348e-06!GO:0031252;leading edge;8.47703449266193e-06!GO:0045454;cell redox homeostasis;9.49327650507134e-06!GO:0006323;DNA packaging;9.93258999866084e-06!GO:0015630;microtubule cytoskeleton;9.94677326811585e-06!GO:0051301;cell division;1.00054211621275e-05!GO:0051170;nuclear import;1.04402781835418e-05!GO:0051276;chromosome organization and biogenesis;1.05994020083103e-05!GO:0006260;DNA replication;1.06412260004698e-05!GO:0004298;threonine endopeptidase activity;1.20974738381324e-05!GO:0003714;transcription corepressor activity;1.21404890669825e-05!GO:0006613;cotranslational protein targeting to membrane;1.3165216916737e-05!GO:0006606;protein import into nucleus;1.35876147617309e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.61260151974726e-05!GO:0008361;regulation of cell size;1.61432673457177e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.69705599992644e-05!GO:0022403;cell cycle phase;1.73413083628825e-05!GO:0016607;nuclear speck;1.74762259173444e-05!GO:0016049;cell growth;1.77007359909242e-05!GO:0003697;single-stranded DNA binding;2.07866999870659e-05!GO:0043623;cellular protein complex assembly;2.1600158476938e-05!GO:0005694;chromosome;2.21077721011502e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.29532339140572e-05!GO:0031968;organelle outer membrane;2.48215319969219e-05!GO:0005048;signal sequence binding;3.16114116437936e-05!GO:0043566;structure-specific DNA binding;3.2533241601805e-05!GO:0019867;outer membrane;3.37239080096114e-05!GO:0006333;chromatin assembly or disassembly;3.92781926004065e-05!GO:0001558;regulation of cell growth;3.97068084966499e-05!GO:0050794;regulation of cellular process;3.97068084966499e-05!GO:0006403;RNA localization;4.02179335417416e-05!GO:0016859;cis-trans isomerase activity;4.09700404071369e-05!GO:0003724;RNA helicase activity;4.37609666673423e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.44190705097014e-05!GO:0050657;nucleic acid transport;4.45354430842822e-05!GO:0051236;establishment of RNA localization;4.45354430842822e-05!GO:0050658;RNA transport;4.45354430842822e-05!GO:0000245;spliceosome assembly;4.67598203758751e-05!GO:0051789;response to protein stimulus;5.14603638833482e-05!GO:0006986;response to unfolded protein;5.14603638833482e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.3486626885402e-05!GO:0030867;rough endoplasmic reticulum membrane;5.88370017028071e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.98219145098056e-05!GO:0044427;chromosomal part;6.6931255086236e-05!GO:0007243;protein kinase cascade;6.92317122783705e-05!GO:0005773;vacuole;7.06577771984547e-05!GO:0005813;centrosome;7.78014392997147e-05!GO:0005741;mitochondrial outer membrane;8.04572721497088e-05!GO:0005905;coated pit;8.39694544656422e-05!GO:0006414;translational elongation;8.52753130375715e-05!GO:0005769;early endosome;8.80129616250052e-05!GO:0045786;negative regulation of progression through cell cycle;9.05575951183208e-05!GO:0006334;nucleosome assembly;9.55400652424735e-05!GO:0031982;vesicle;9.77109405223801e-05!GO:0031410;cytoplasmic vesicle;0.000122890298049845!GO:0016564;transcription repressor activity;0.000154560052712223!GO:0030029;actin filament-based process;0.000155165928991576!GO:0003899;DNA-directed RNA polymerase activity;0.000155462961012904!GO:0006366;transcription from RNA polymerase II promoter;0.000160151672003033!GO:0030663;COPI coated vesicle membrane;0.000160151672003033!GO:0030126;COPI vesicle coat;0.000160151672003033!GO:0000314;organellar small ribosomal subunit;0.000160151672003033!GO:0005763;mitochondrial small ribosomal subunit;0.000160151672003033!GO:0006612;protein targeting to membrane;0.000190402027894664!GO:0030133;transport vesicle;0.000257830783810031!GO:0005885;Arp2/3 protein complex;0.000278093438126452!GO:0043021;ribonucleoprotein binding;0.000289015030724181!GO:0005815;microtubule organizing center;0.00028944935670469!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000300101465426176!GO:0007010;cytoskeleton organization and biogenesis;0.000305381479278875!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000309925839649911!GO:0031497;chromatin assembly;0.000344657428698149!GO:0016197;endosome transport;0.000362586661718863!GO:0043284;biopolymer biosynthetic process;0.000366656001021727!GO:0031072;heat shock protein binding;0.000366656001021727!GO:0031324;negative regulation of cellular metabolic process;0.000368152988753152!GO:0006626;protein targeting to mitochondrion;0.000379616673820746!GO:0008092;cytoskeletal protein binding;0.000412670775166109!GO:0009165;nucleotide biosynthetic process;0.000412670775166109!GO:0007264;small GTPase mediated signal transduction;0.000428943761813138!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000447904869445738!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000448656316560429!GO:0000785;chromatin;0.000472998617497216!GO:0006839;mitochondrial transport;0.000490344288843628!GO:0043681;protein import into mitochondrion;0.00051205892029395!GO:0051427;hormone receptor binding;0.000517829852174097!GO:0000323;lytic vacuole;0.000518913115899384!GO:0005764;lysosome;0.000518913115899384!GO:0046474;glycerophospholipid biosynthetic process;0.0005285388954975!GO:0019899;enzyme binding;0.000590787924970422!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000602657691905498!GO:0015399;primary active transmembrane transporter activity;0.000602657691905498!GO:0051028;mRNA transport;0.000619228873376129!GO:0044262;cellular carbohydrate metabolic process;0.000649075980733318!GO:0019843;rRNA binding;0.000717938052584585!GO:0016044;membrane organization and biogenesis;0.000728967587336937!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000767911248344858!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00080148272312422!GO:0006891;intra-Golgi vesicle-mediated transport;0.000860166623696087!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000879619927133392!GO:0051920;peroxiredoxin activity;0.000958225313017753!GO:0000279;M phase;0.000961980059057392!GO:0048522;positive regulation of cellular process;0.000995165544383635!GO:0030137;COPI-coated vesicle;0.00102260600995084!GO:0035257;nuclear hormone receptor binding;0.00102352166205737!GO:0030658;transport vesicle membrane;0.00102352166205737!GO:0040008;regulation of growth;0.00102557372563057!GO:0045045;secretory pathway;0.00103900480871137!GO:0004576;oligosaccharyl transferase activity;0.00106191623700733!GO:0008186;RNA-dependent ATPase activity;0.00110683163630284!GO:0030659;cytoplasmic vesicle membrane;0.00130881485442458!GO:0046467;membrane lipid biosynthetic process;0.00133906680075249!GO:0007006;mitochondrial membrane organization and biogenesis;0.00138184303449932!GO:0051329;interphase of mitotic cell cycle;0.00138191765817062!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00150505269702887!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00150505269702887!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00150505269702887!GO:0008250;oligosaccharyl transferase complex;0.00162942330480899!GO:0009892;negative regulation of metabolic process;0.00166820204907813!GO:0048471;perinuclear region of cytoplasm;0.00177224585360023!GO:0005791;rough endoplasmic reticulum;0.00182481835559957!GO:0007050;cell cycle arrest;0.00183728829811037!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00188626151618998!GO:0000059;protein import into nucleus, docking;0.00190856588150874!GO:0030132;clathrin coat of coated pit;0.00192384755169551!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00192927569224714!GO:0050789;regulation of biological process;0.00193914323729131!GO:0042802;identical protein binding;0.0019502316613502!GO:0065009;regulation of a molecular function;0.0019695648335469!GO:0008047;enzyme activator activity;0.00199305396767857!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00200330748433281!GO:0016568;chromatin modification;0.00209870526317885!GO:0003713;transcription coactivator activity;0.00210353360714513!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00210353360714513!GO:0015002;heme-copper terminal oxidase activity;0.00210353360714513!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00210353360714513!GO:0004129;cytochrome-c oxidase activity;0.00210353360714513!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00211045305462286!GO:0051540;metal cluster binding;0.0021783556873518!GO:0051536;iron-sulfur cluster binding;0.0021783556873518!GO:0030118;clathrin coat;0.00219336706109098!GO:0006082;organic acid metabolic process;0.0022607084760451!GO:0030176;integral to endoplasmic reticulum membrane;0.00233748688115855!GO:0046489;phosphoinositide biosynthetic process;0.00236932683794819!GO:0019752;carboxylic acid metabolic process;0.00236932683794819!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00249102506643586!GO:0051325;interphase;0.00259872526538136!GO:0030134;ER to Golgi transport vesicle;0.00275341358368746!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00279702909986199!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00279702909986199!GO:0004004;ATP-dependent RNA helicase activity;0.00279702909986199!GO:0048500;signal recognition particle;0.00280098333721729!GO:0018196;peptidyl-asparagine modification;0.00287208642705118!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00287208642705118!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00294809728947798!GO:0006383;transcription from RNA polymerase III promoter;0.0030002382998155!GO:0044433;cytoplasmic vesicle part;0.00301362652416177!GO:0008139;nuclear localization sequence binding;0.00315126742081511!GO:0003684;damaged DNA binding;0.00316912286990581!GO:0030660;Golgi-associated vesicle membrane;0.00325576816484738!GO:0046483;heterocycle metabolic process;0.00332451608638803!GO:0006950;response to stress;0.00349876247179701!GO:0030880;RNA polymerase complex;0.00351179397392652!GO:0005819;spindle;0.00355492596018356!GO:0009967;positive regulation of signal transduction;0.00399644538954221!GO:0003746;translation elongation factor activity;0.00400813903802041!GO:0051168;nuclear export;0.00415950319755815!GO:0051087;chaperone binding;0.00428374061802232!GO:0006118;electron transport;0.00466413331906598!GO:0022890;inorganic cation transmembrane transporter activity;0.00467382636161929!GO:0030127;COPII vesicle coat;0.00495796082393909!GO:0012507;ER to Golgi transport vesicle membrane;0.00495796082393909!GO:0048487;beta-tubulin binding;0.00528751061108297!GO:0008632;apoptotic program;0.005367915876844!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.005367915876844!GO:0015631;tubulin binding;0.005367915876844!GO:0008180;signalosome;0.00537933323480008!GO:0016272;prefoldin complex;0.00552866577927201!GO:0015992;proton transport;0.00552866577927201!GO:0003711;transcription elongation regulator activity;0.00563711434388396!GO:0012506;vesicle membrane;0.00564297225898176!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00591797489437792!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00600909913026426!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00607455079844455!GO:0045047;protein targeting to ER;0.00607455079844455!GO:0006509;membrane protein ectodomain proteolysis;0.00624307568564177!GO:0033619;membrane protein proteolysis;0.00624307568564177!GO:0006497;protein amino acid lipidation;0.00644447927888798!GO:0043492;ATPase activity, coupled to movement of substances;0.00658374311361781!GO:0030125;clathrin vesicle coat;0.00660635044103781!GO:0030665;clathrin coated vesicle membrane;0.00660635044103781!GO:0006595;polyamine metabolic process;0.00667865066065922!GO:0006818;hydrogen transport;0.00680484899375759!GO:0030119;AP-type membrane coat adaptor complex;0.00719736761502041!GO:0008312;7S RNA binding;0.0072276262990071!GO:0005869;dynactin complex;0.00740409055068847!GO:0003690;double-stranded DNA binding;0.00777517502583145!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00780895073925766!GO:0000428;DNA-directed RNA polymerase complex;0.00780895073925766!GO:0001726;ruffle;0.00786334924797067!GO:0030308;negative regulation of cell growth;0.0080064886160441!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00800708446807977!GO:0008610;lipid biosynthetic process;0.00801014986415885!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00805728282793764!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00818414425603747!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00819020229888847!GO:0006778;porphyrin metabolic process;0.00829720515941574!GO:0033013;tetrapyrrole metabolic process;0.00829720515941574!GO:0045792;negative regulation of cell size;0.00836615975502035!GO:0006417;regulation of translation;0.00848334428122261!GO:0030027;lamellipodium;0.00855166122522617!GO:0035258;steroid hormone receptor binding;0.00881100881054038!GO:0000075;cell cycle checkpoint;0.00881782017978109!GO:0005862;muscle thin filament tropomyosin;0.00886811470256619!GO:0031902;late endosome membrane;0.00891199392157256!GO:0006520;amino acid metabolic process;0.00904685665160841!GO:0006650;glycerophospholipid metabolic process;0.00907855100779054!GO:0030521;androgen receptor signaling pathway;0.00943657128848186!GO:0000287;magnesium ion binding;0.00949404807194567!GO:0043433;negative regulation of transcription factor activity;0.00951396097321987!GO:0000049;tRNA binding;0.00951525671861942!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00957428871892999!GO:0000339;RNA cap binding;0.00967268909126824!GO:0006979;response to oxidative stress;0.00969941486926182!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0102089545013538!GO:0048468;cell development;0.0102346988502382!GO:0030145;manganese ion binding;0.0104373640660791!GO:0032940;secretion by cell;0.0106774351246338!GO:0051539;4 iron, 4 sulfur cluster binding;0.0108572634131972!GO:0004674;protein serine/threonine kinase activity;0.0109001127638607!GO:0007030;Golgi organization and biogenesis;0.0109355292629071!GO:0008033;tRNA processing;0.0110622992457898!GO:0042168;heme metabolic process;0.0112564027367275!GO:0050681;androgen receptor binding;0.0112760646289455!GO:0044452;nucleolar part;0.0116430979378505!GO:0046519;sphingoid metabolic process;0.0117870543172711!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0128044727110528!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0128765946238718!GO:0043022;ribosome binding;0.0131218915962375!GO:0000082;G1/S transition of mitotic cell cycle;0.0131267859351853!GO:0006892;post-Golgi vesicle-mediated transport;0.0131856687037573!GO:0006007;glucose catabolic process;0.0133740238097411!GO:0030384;phosphoinositide metabolic process;0.0135755523409407!GO:0005832;chaperonin-containing T-complex;0.0136229984974393!GO:0030131;clathrin adaptor complex;0.0137076323894059!GO:0031901;early endosome membrane;0.0139208598765865!GO:0031625;ubiquitin protein ligase binding;0.0139280255271852!GO:0051287;NAD binding;0.0140445710998786!GO:0016563;transcription activator activity;0.0140445710998786!GO:0007034;vacuolar transport;0.0145230451471638!GO:0016126;sterol biosynthetic process;0.0145241410956291!GO:0031543;peptidyl-proline dioxygenase activity;0.014804584734132!GO:0005801;cis-Golgi network;0.0149519253456089!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0149975481697595!GO:0007033;vacuole organization and biogenesis;0.0151044095646334!GO:0009889;regulation of biosynthetic process;0.0160447263773769!GO:0032984;macromolecular complex disassembly;0.016069208689055!GO:0042158;lipoprotein biosynthetic process;0.016069208689055!GO:0003729;mRNA binding;0.0160712462041892!GO:0048144;fibroblast proliferation;0.0164215732442204!GO:0048145;regulation of fibroblast proliferation;0.0164215732442204!GO:0050811;GABA receptor binding;0.0167639848913854!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0169795895025067!GO:0033673;negative regulation of kinase activity;0.0170965522322623!GO:0006469;negative regulation of protein kinase activity;0.0170965522322623!GO:0007040;lysosome organization and biogenesis;0.0170965522322623!GO:0006672;ceramide metabolic process;0.0171108522993281!GO:0045936;negative regulation of phosphate metabolic process;0.0172909189292883!GO:0005874;microtubule;0.0176461478995853!GO:0016363;nuclear matrix;0.0179465823231356!GO:0031301;integral to organelle membrane;0.0182553388528517!GO:0017166;vinculin binding;0.0186528104520476!GO:0030041;actin filament polymerization;0.0187797495546551!GO:0051128;regulation of cellular component organization and biogenesis;0.0187863749370975!GO:0004177;aminopeptidase activity;0.0188322143750898!GO:0016481;negative regulation of transcription;0.019163779952445!GO:0031326;regulation of cellular biosynthetic process;0.0195976356415248!GO:0000786;nucleosome;0.0195976356415248!GO:0006984;ER-nuclear signaling pathway;0.0198682346276458!GO:0050662;coenzyme binding;0.0200473563643154!GO:0006506;GPI anchor biosynthetic process;0.0208334259617967!GO:0003756;protein disulfide isomerase activity;0.0209368826481951!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0209368826481951!GO:0008243;plasminogen activator activity;0.0210073576824815!GO:0006505;GPI anchor metabolic process;0.0212281409758938!GO:0008234;cysteine-type peptidase activity;0.0212805631408894!GO:0051348;negative regulation of transferase activity;0.0215744086136966!GO:0031418;L-ascorbic acid binding;0.0216942677745327!GO:0006354;RNA elongation;0.0219322762820387!GO:0006779;porphyrin biosynthetic process;0.0219678869216598!GO:0033014;tetrapyrrole biosynthetic process;0.0219678869216598!GO:0008022;protein C-terminus binding;0.0220497971666814!GO:0019798;procollagen-proline dioxygenase activity;0.0220497971666814!GO:0005684;U2-dependent spliceosome;0.0223195687500509!GO:0043241;protein complex disassembly;0.0229023284425355!GO:0006611;protein export from nucleus;0.0230773478797258!GO:0005096;GTPase activator activity;0.0232621453958063!GO:0006261;DNA-dependent DNA replication;0.0233839771423589!GO:0031529;ruffle organization and biogenesis;0.023542190838474!GO:0019206;nucleoside kinase activity;0.0240006851861123!GO:0050178;phenylpyruvate tautomerase activity;0.0240428843061505!GO:0005100;Rho GTPase activator activity;0.0240738761127561!GO:0045926;negative regulation of growth;0.0242283734943955!GO:0043065;positive regulation of apoptosis;0.0242823060135588!GO:0000096;sulfur amino acid metabolic process;0.0247579786882272!GO:0007021;tubulin folding;0.0247882916442493!GO:0009116;nucleoside metabolic process;0.0254506706972798!GO:0016408;C-acyltransferase activity;0.0254506706972798!GO:0005637;nuclear inner membrane;0.0262260835121498!GO:0043068;positive regulation of programmed cell death;0.0263503079750866!GO:0030833;regulation of actin filament polymerization;0.0268715299555194!GO:0005758;mitochondrial intermembrane space;0.0275191045512664!GO:0006302;double-strand break repair;0.0276082915845225!GO:0030433;ER-associated protein catabolic process;0.0276150906889058!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0276150906889058!GO:0009225;nucleotide-sugar metabolic process;0.0276203403210918!GO:0048146;positive regulation of fibroblast proliferation;0.0284704931018262!GO:0005774;vacuolar membrane;0.0285802566170041!GO:0006783;heme biosynthetic process;0.0290980154292647!GO:0051252;regulation of RNA metabolic process;0.0291069601573402!GO:0007041;lysosomal transport;0.0294058269951211!GO:0006289;nucleotide-excision repair;0.0297454571884886!GO:0050790;regulation of catalytic activity;0.0297983783966751!GO:0006740;NADPH regeneration;0.0305837606049012!GO:0006098;pentose-phosphate shunt;0.0305837606049012!GO:0016301;kinase activity;0.0318462489120153!GO:0031371;ubiquitin conjugating enzyme complex;0.0319372583237407!GO:0006352;transcription initiation;0.0323040447912528!GO:0051098;regulation of binding;0.0324854500638344!GO:0043624;cellular protein complex disassembly;0.0324854500638344!GO:0005669;transcription factor TFIID complex;0.0325518514774917!GO:0006807;nitrogen compound metabolic process;0.0330794186348103!GO:0008154;actin polymerization and/or depolymerization;0.0336333917921094!GO:0004722;protein serine/threonine phosphatase activity;0.0339313641727434!GO:0008320;protein transmembrane transporter activity;0.0339313641727434!GO:0005099;Ras GTPase activator activity;0.0344173912154022!GO:0022884;macromolecule transmembrane transporter activity;0.0344173912154022!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0344173912154022!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0347329264361434!GO:0006144;purine base metabolic process;0.0349028071988753!GO:0008287;protein serine/threonine phosphatase complex;0.0353004738076672!GO:0008538;proteasome activator activity;0.0353004738076672!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0353004738076672!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0353004738076672!GO:0042326;negative regulation of phosphorylation;0.0354428269027942!GO:0008637;apoptotic mitochondrial changes;0.0355561486259318!GO:0030508;thiol-disulfide exchange intermediate activity;0.0362678036208633!GO:0032906;transforming growth factor-beta2 production;0.0363584282663402!GO:0032909;regulation of transforming growth factor-beta2 production;0.0363584282663402!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0363773147219309!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0369761095750289!GO:0008652;amino acid biosynthetic process;0.0370538520506076!GO:0030503;regulation of cell redox homeostasis;0.0370538520506076!GO:0030911;TPR domain binding;0.0370538520506076!GO:0006607;NLS-bearing substrate import into nucleus;0.0371709979425263!GO:0051059;NF-kappaB binding;0.0392195617836655!GO:0030032;lamellipodium biogenesis;0.0394279503480069!GO:0006458;'de novo' protein folding;0.0399711949758518!GO:0051084;'de novo' posttranslational protein folding;0.0399711949758518!GO:0007265;Ras protein signal transduction;0.0409754787493497!GO:0003678;DNA helicase activity;0.0419469437091312!GO:0008147;structural constituent of bone;0.0425677216158548!GO:0022411;cellular component disassembly;0.0425677216158548!GO:0048518;positive regulation of biological process;0.0425677216158548!GO:0001666;response to hypoxia;0.042833860844204!GO:0000209;protein polyubiquitination;0.0432063705215425!GO:0006220;pyrimidine nucleotide metabolic process;0.0432438664740919!GO:0009308;amine metabolic process;0.043481748952859!GO:0016860;intramolecular oxidoreductase activity;0.0440217852943753!GO:0005138;interleukin-6 receptor binding;0.045163479380088!GO:0016791;phosphoric monoester hydrolase activity;0.0453358901938268!GO:0009112;nucleobase metabolic process;0.0457375480110197!GO:0005092;GDP-dissociation inhibitor activity;0.0463794383383121!GO:0005784;translocon complex;0.0474316797542386!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0478655009987641!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0478655009987641!GO:0030518;steroid hormone receptor signaling pathway;0.0480274621653503!GO:0048037;cofactor binding;0.0494619696420826!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0499860888836862 | |||
|sample_id=11433 | |sample_id=11433 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=brachiocephalic artery | |sample_tissue=brachiocephalic artery | ||
|top_motifs=HIF1A:2.20667198736;PPARG:1.85257670204;ONECUT1,2:1.36028064264;IKZF1:1.24643136568;HOX{A5,B5}:1.21024016896;XBP1:1.16879653071;ALX1:1.15016432622;GTF2A1,2:1.09871854515;POU3F1..4:1.05529530472;ELK1,4_GABP{A,B1}:1.00532099968;NKX3-1:1.00218907197;POU1F1:0.963924769952;NFE2L1:0.949162333421;SRF:0.93117440492;FOX{I1,J2}:0.92960407349;GCM1,2:0.914998209913;HMX1:0.883168917773;CRX:0.804284584272;ADNP_IRX_SIX_ZHX:0.788537338662;HSF1,2:0.742802352274;TP53:0.736650046473;TEAD1:0.733046917859;TBP:0.718284307447;TFAP4:0.715402276872;HES1:0.708630967765;MAFB:0.707286369216;MYBL2:0.661966316033;NR3C1:0.647510283096;PAX8:0.643777983237;ZBTB6:0.63056145292;TAL1_TCF{3,4,12}:0.622322103801;ATF6:0.616731302809;MTE{core}:0.58398595987;SOX17:0.582932615746;GLI1..3:0.566052608192;NHLH1,2:0.565749715005;NANOG{mouse}:0.552878441798;HMGA1,2:0.534013106736;LEF1_TCF7_TCF7L1,2:0.531320002278;SMAD1..7,9:0.500457878623;TLX1..3_NFIC{dimer}:0.499228507668;EBF1:0.475579294158;NFIX:0.47539001743;ZNF238:0.47448959152;NFATC1..3:0.47020291028;CDC5L:0.455650089913;TBX4,5:0.443522367198;TFAP2B:0.408109440875;AHR_ARNT_ARNT2:0.405548817398;ZIC1..3:0.388090103604;PAX5:0.384149537075;FOSL2:0.378644367119;EN1,2:0.37766973293;HLF:0.37527299133;AIRE:0.334850299634;TFCP2:0.332368188343;HOXA9_MEIS1:0.330234199494;NFE2L2:0.324032322051;FOS_FOS{B,L1}_JUN{B,D}:0.319416594839;STAT5{A,B}:0.318955573903;NKX3-2:0.313489056156;NRF1:0.311951702962;SOX2:0.269108096201;BACH2:0.258621893509;ZNF143:0.224573042732;ZNF148:0.218001902553;CEBPA,B_DDIT3:0.214676288412;MEF2{A,B,C,D}:0.214555038179;ESRRA:0.208309817132;ELF1,2,4:0.178228193925;UFEwm:0.177939935174;ALX4:0.176357516232;GFI1B:0.161461841703;LHX3,4:0.129767503987;REST:0.122927127468;PBX1:0.0994884163671;EVI1:0.0973463866608;POU5F1:0.0972105101422;XCPE1{core}:0.0904617589708;MYOD1:0.0883205374171;NR5A1,2:0.069404267483;NANOG:0.0595603852991;JUN:0.058566012037;GATA6:0.0560212052821;KLF4:0.0555230635881;ARID5B:0.0452293176241;TLX2:0.0368302836613;ATF2:0.036249322557;MAZ:0.0220755398791;TGIF1:0.0170968899323;CREB1:0.0166175253261;PRDM1:0.0158419664448;HNF1A:0.0136247452826;NFKB1_REL_RELA:0.00130029352053;RFX1:-0.00152549560539;PAX2:-0.00495017152531;ZFP161:-0.00861972366248;GTF2I:-0.0203227292145;AR:-0.0348239558452;RBPJ:-0.041930020463;NFE2:-0.0539400391137;HIC1:-0.0639276093446;PRRX1,2:-0.0645460852103;PAX6:-0.0784054189083;GZF1:-0.0866311567248;HBP1_HMGB_SSRP1_UBTF:-0.0867317777281;TFAP2{A,C}:-0.089049289661;MYB:-0.09087375816;VSX1,2:-0.100607823124;ZNF384:-0.101785095265;FOXN1:-0.10427569308;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.106531300822;MTF1:-0.109814373042;bHLH_family:-0.11349358104;NKX2-2,8:-0.125689136114;MYFfamily:-0.158584510933;TEF:-0.178466977641;PAX1,9:-0.193008694109;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.195222975069;STAT2,4,6:-0.198473163941;RXR{A,B,G}:-0.204205113879;SPZ1:-0.2106841166;ZBTB16:-0.223071842829;MED-1{core}:-0.224739902721;IKZF2:-0.225676165205;ETS1,2:-0.229742463813;POU6F1:-0.235030121649;YY1:-0.238553553904;ATF4:-0.244285023711;IRF7:-0.248728108802;PATZ1:-0.251959172723;TFDP1:-0.257468071395;GFI1:-0.259746341425;SPI1:-0.263906024645;RUNX1..3:-0.266747704162;SOX{8,9,10}:-0.27455004706;HAND1,2:-0.281378698204;MZF1:-0.290423512767;SOX5:-0.296744862585;NFIL3:-0.307050316946;POU2F1..3:-0.324063841075;SP1:-0.333196773994;OCT4_SOX2{dimer}:-0.34560643863;FOXA2:-0.362679913319;FOX{F1,F2,J1}:-0.375579347482;EGR1..3:-0.376312699408;BPTF:-0.390807041497;SPIB:-0.41531281444;LMO2:-0.417102286384;HNF4A_NR2F1,2:-0.430739846099;PAX4:-0.435711363875;FOXM1:-0.448364725894;E2F1..5:-0.459512986756;ATF5_CREB3:-0.461720897729;FOX{D1,D2}:-0.462915809832;CDX1,2,4:-0.504831413132;TOPORS:-0.511705961719;IRF1,2:-0.521602512305;FOXQ1:-0.527531621357;ZEB1:-0.530404614563;NFY{A,B,C}:-0.538535878221;FOXL1:-0.550176031134;FOXP3:-0.592413286556;STAT1,3:-0.598970652949;ESR1:-0.601178937331;NR1H4:-0.6199675144;GATA4:-0.638885086884;RFX2..5_RFXANK_RFXAP:-0.641310003947;NKX2-3_NKX2-5:-0.666021270177;RORA:-0.679228113982;RXRA_VDR{dimer}:-0.686698051023;HOX{A4,D4}:-0.695165368899;SNAI1..3:-0.706258099441;PITX1..3:-0.709847157861;ZNF423:-0.776274373006;FOXP1:-0.778303529831;FOXD3:-0.830737508579;BREu{core}:-0.839809593629;T:-0.845877971565;CUX2:-0.858505857934;DMAP1_NCOR{1,2}_SMARC:-0.877884262026;PAX3,7:-0.941893460356;HOX{A6,A7,B6,B7}:-0.967126621834;NR6A1:-0.995840578353;SREBF1,2:-1.00705795082;RREB1:-1.13511728067;PDX1:-1.13629206991;NKX2-1,4:-1.18359422975;DBP:-1.20297584898;FOXO1,3,4:-1.21464459277;EP300:-1.31037987638;NKX6-1,2:-1.91033059527 | |top_motifs=HIF1A:2.20667198736;PPARG:1.85257670204;ONECUT1,2:1.36028064264;IKZF1:1.24643136568;HOX{A5,B5}:1.21024016896;XBP1:1.16879653071;ALX1:1.15016432622;GTF2A1,2:1.09871854515;POU3F1..4:1.05529530472;ELK1,4_GABP{A,B1}:1.00532099968;NKX3-1:1.00218907197;POU1F1:0.963924769952;NFE2L1:0.949162333421;SRF:0.93117440492;FOX{I1,J2}:0.92960407349;GCM1,2:0.914998209913;HMX1:0.883168917773;CRX:0.804284584272;ADNP_IRX_SIX_ZHX:0.788537338662;HSF1,2:0.742802352274;TP53:0.736650046473;TEAD1:0.733046917859;TBP:0.718284307447;TFAP4:0.715402276872;HES1:0.708630967765;MAFB:0.707286369216;MYBL2:0.661966316033;NR3C1:0.647510283096;PAX8:0.643777983237;ZBTB6:0.63056145292;TAL1_TCF{3,4,12}:0.622322103801;ATF6:0.616731302809;MTE{core}:0.58398595987;SOX17:0.582932615746;GLI1..3:0.566052608192;NHLH1,2:0.565749715005;NANOG{mouse}:0.552878441798;HMGA1,2:0.534013106736;LEF1_TCF7_TCF7L1,2:0.531320002278;SMAD1..7,9:0.500457878623;TLX1..3_NFIC{dimer}:0.499228507668;EBF1:0.475579294158;NFIX:0.47539001743;ZNF238:0.47448959152;NFATC1..3:0.47020291028;CDC5L:0.455650089913;TBX4,5:0.443522367198;TFAP2B:0.408109440875;AHR_ARNT_ARNT2:0.405548817398;ZIC1..3:0.388090103604;PAX5:0.384149537075;FOSL2:0.378644367119;EN1,2:0.37766973293;HLF:0.37527299133;AIRE:0.334850299634;TFCP2:0.332368188343;HOXA9_MEIS1:0.330234199494;NFE2L2:0.324032322051;FOS_FOS{B,L1}_JUN{B,D}:0.319416594839;STAT5{A,B}:0.318955573903;NKX3-2:0.313489056156;NRF1:0.311951702962;SOX2:0.269108096201;BACH2:0.258621893509;ZNF143:0.224573042732;ZNF148:0.218001902553;CEBPA,B_DDIT3:0.214676288412;MEF2{A,B,C,D}:0.214555038179;ESRRA:0.208309817132;ELF1,2,4:0.178228193925;UFEwm:0.177939935174;ALX4:0.176357516232;GFI1B:0.161461841703;LHX3,4:0.129767503987;REST:0.122927127468;PBX1:0.0994884163671;EVI1:0.0973463866608;POU5F1:0.0972105101422;XCPE1{core}:0.0904617589708;MYOD1:0.0883205374171;NR5A1,2:0.069404267483;NANOG:0.0595603852991;JUN:0.058566012037;GATA6:0.0560212052821;KLF4:0.0555230635881;ARID5B:0.0452293176241;TLX2:0.0368302836613;ATF2:0.036249322557;MAZ:0.0220755398791;TGIF1:0.0170968899323;CREB1:0.0166175253261;PRDM1:0.0158419664448;HNF1A:0.0136247452826;NFKB1_REL_RELA:0.00130029352053;RFX1:-0.00152549560539;PAX2:-0.00495017152531;ZFP161:-0.00861972366248;GTF2I:-0.0203227292145;AR:-0.0348239558452;RBPJ:-0.041930020463;NFE2:-0.0539400391137;HIC1:-0.0639276093446;PRRX1,2:-0.0645460852103;PAX6:-0.0784054189083;GZF1:-0.0866311567248;HBP1_HMGB_SSRP1_UBTF:-0.0867317777281;TFAP2{A,C}:-0.089049289661;MYB:-0.09087375816;VSX1,2:-0.100607823124;ZNF384:-0.101785095265;FOXN1:-0.10427569308;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.106531300822;MTF1:-0.109814373042;bHLH_family:-0.11349358104;NKX2-2,8:-0.125689136114;MYFfamily:-0.158584510933;TEF:-0.178466977641;PAX1,9:-0.193008694109;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.195222975069;STAT2,4,6:-0.198473163941;RXR{A,B,G}:-0.204205113879;SPZ1:-0.2106841166;ZBTB16:-0.223071842829;MED-1{core}:-0.224739902721;IKZF2:-0.225676165205;ETS1,2:-0.229742463813;POU6F1:-0.235030121649;YY1:-0.238553553904;ATF4:-0.244285023711;IRF7:-0.248728108802;PATZ1:-0.251959172723;TFDP1:-0.257468071395;GFI1:-0.259746341425;SPI1:-0.263906024645;RUNX1..3:-0.266747704162;SOX{8,9,10}:-0.27455004706;HAND1,2:-0.281378698204;MZF1:-0.290423512767;SOX5:-0.296744862585;NFIL3:-0.307050316946;POU2F1..3:-0.324063841075;SP1:-0.333196773994;OCT4_SOX2{dimer}:-0.34560643863;FOXA2:-0.362679913319;FOX{F1,F2,J1}:-0.375579347482;EGR1..3:-0.376312699408;BPTF:-0.390807041497;SPIB:-0.41531281444;LMO2:-0.417102286384;HNF4A_NR2F1,2:-0.430739846099;PAX4:-0.435711363875;FOXM1:-0.448364725894;E2F1..5:-0.459512986756;ATF5_CREB3:-0.461720897729;FOX{D1,D2}:-0.462915809832;CDX1,2,4:-0.504831413132;TOPORS:-0.511705961719;IRF1,2:-0.521602512305;FOXQ1:-0.527531621357;ZEB1:-0.530404614563;NFY{A,B,C}:-0.538535878221;FOXL1:-0.550176031134;FOXP3:-0.592413286556;STAT1,3:-0.598970652949;ESR1:-0.601178937331;NR1H4:-0.6199675144;GATA4:-0.638885086884;RFX2..5_RFXANK_RFXAP:-0.641310003947;NKX2-3_NKX2-5:-0.666021270177;RORA:-0.679228113982;RXRA_VDR{dimer}:-0.686698051023;HOX{A4,D4}:-0.695165368899;SNAI1..3:-0.706258099441;PITX1..3:-0.709847157861;ZNF423:-0.776274373006;FOXP1:-0.778303529831;FOXD3:-0.830737508579;BREu{core}:-0.839809593629;T:-0.845877971565;CUX2:-0.858505857934;DMAP1_NCOR{1,2}_SMARC:-0.877884262026;PAX3,7:-0.941893460356;HOX{A6,A7,B6,B7}:-0.967126621834;NR6A1:-0.995840578353;SREBF1,2:-1.00705795082;RREB1:-1.13511728067;PDX1:-1.13629206991;NKX2-1,4:-1.18359422975;DBP:-1.20297584898;FOXO1,3,4:-1.21464459277;EP300:-1.31037987638;NKX6-1,2:-1.91033059527 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11433-118H2;search_select_hide=table117:FF:11433-118H2 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Smooth Muscle Cells - Brachiocephalic, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12043 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12043
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12043
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.49 |
| 10 | 10 | 0.225 |
| 100 | 100 | 0.023 |
| 101 | 101 | 0.091 |
| 102 | 102 | 0.649 |
| 103 | 103 | 0.392 |
| 104 | 104 | 0.581 |
| 105 | 105 | 0.258 |
| 106 | 106 | 0.37 |
| 107 | 107 | 0.684 |
| 108 | 108 | 0.599 |
| 109 | 109 | 0.852 |
| 11 | 11 | 0.826 |
| 110 | 110 | 0.723 |
| 111 | 111 | 0.115 |
| 112 | 112 | 0.762 |
| 113 | 113 | 0.143 |
| 114 | 114 | 0.711 |
| 115 | 115 | 0.683 |
| 116 | 116 | 0.131 |
| 117 | 117 | 0.603 |
| 118 | 118 | 0.801 |
| 119 | 119 | 0.91 |
| 12 | 12 | 0.877 |
| 120 | 120 | 0.288 |
| 121 | 121 | 0.994 |
| 122 | 122 | 0.655 |
| 123 | 123 | 0.0199 |
| 124 | 124 | 0.0708 |
| 125 | 125 | 0.808 |
| 126 | 126 | 0.365 |
| 127 | 127 | 0.463 |
| 128 | 128 | 0.386 |
| 129 | 129 | 0.579 |
| 13 | 13 | 0.171 |
| 130 | 130 | 0.86 |
| 131 | 131 | 0.021 |
| 132 | 132 | 0.617 |
| 133 | 133 | 0.288 |
| 134 | 134 | 0.18 |
| 135 | 135 | 0.414 |
| 136 | 136 | 0.169 |
| 137 | 137 | 0.453 |
| 138 | 138 | 0.897 |
| 139 | 139 | 0.0252 |
| 14 | 14 | 0.0848 |
| 140 | 140 | 0.667 |
| 141 | 141 | 0.629 |
| 142 | 142 | 0.816 |
| 143 | 143 | 0.324 |
| 144 | 144 | 0.509 |
| 145 | 145 | 0.582 |
| 146 | 146 | 0.405 |
| 147 | 147 | 0.201 |
| 148 | 148 | 0.252 |
| 149 | 149 | 0.475 |
| 15 | 15 | 0.511 |
| 150 | 150 | 0.535 |
| 151 | 151 | 0.885 |
| 152 | 152 | 0.0157 |
| 153 | 153 | 0.708 |
| 154 | 154 | 0.928 |
| 155 | 155 | 0.00184 |
| 156 | 156 | 0.569 |
| 157 | 157 | 0.509 |
| 158 | 158 | 0.0165 |
| 159 | 159 | 0.233 |
| 16 | 16 | 0.346 |
| 160 | 160 | 0.449 |
| 161 | 161 | 0.798 |
| 162 | 162 | 0.611 |
| 163 | 163 | 0.413 |
| 164 | 164 | 0.203 |
| 165 | 165 | 0.115 |
| 166 | 166 | 0.0444 |
| 167 | 167 | 0.953 |
| 168 | 168 | 0.831 |
| 169 | 169 | 0.812 |
| 17 | 17 | 0.66 |
| 18 | 18 | 0.0928 |
| 19 | 19 | 0.913 |
| 2 | 2 | 0.646 |
| 20 | 20 | 0.684 |
| 21 | 21 | 0.754 |
| 22 | 22 | 0.891 |
| 23 | 23 | 0.126 |
| 24 | 24 | 0.604 |
| 25 | 25 | 0.661 |
| 26 | 26 | 0.441 |
| 27 | 27 | 0.427 |
| 28 | 28 | 0.553 |
| 29 | 29 | 0.387 |
| 3 | 3 | 0.882 |
| 30 | 30 | 0.239 |
| 31 | 31 | 0.976 |
| 32 | 32 | 0.00542 |
| 33 | 33 | 0.0912 |
| 34 | 34 | 0.839 |
| 35 | 35 | 0.521 |
| 36 | 36 | 0.0441 |
| 37 | 37 | 0.202 |
| 38 | 38 | 0.533 |
| 39 | 39 | 0.471 |
| 4 | 4 | 0.454 |
| 40 | 40 | 0.107 |
| 41 | 41 | 0.591 |
| 42 | 42 | 0.65 |
| 43 | 43 | 0.397 |
| 44 | 44 | 0.673 |
| 45 | 45 | 0.954 |
| 46 | 46 | 0.75 |
| 47 | 47 | 0.876 |
| 48 | 48 | 0.704 |
| 49 | 49 | 0.0349 |
| 5 | 5 | 0.963 |
| 50 | 50 | 0.834 |
| 51 | 51 | 0.304 |
| 52 | 52 | 0.435 |
| 53 | 53 | 0.199 |
| 54 | 54 | 0.964 |
| 55 | 55 | 0.423 |
| 56 | 56 | 0.36 |
| 57 | 57 | 0.846 |
| 58 | 58 | 0.529 |
| 59 | 59 | 0.817 |
| 6 | 6 | 0.276 |
| 60 | 60 | 0.337 |
| 61 | 61 | 0.281 |
| 62 | 62 | 0.805 |
| 63 | 63 | 0.82 |
| 64 | 64 | 0.783 |
| 65 | 65 | 0.958 |
| 66 | 66 | 0.971 |
| 67 | 67 | 0.459 |
| 68 | 68 | 0.636 |
| 69 | 69 | 0.745 |
| 7 | 7 | 0.899 |
| 70 | 70 | 0.528 |
| 71 | 71 | 0.48 |
| 72 | 72 | 0.138 |
| 73 | 73 | 0.00343 |
| 74 | 74 | 0.633 |
| 75 | 75 | 0.652 |
| 76 | 76 | 0.71 |
| 77 | 77 | 0.0655 |
| 78 | 78 | 0.279 |
| 79 | 79 | 0.813 |
| 8 | 8 | 0.878 |
| 80 | 80 | 0.576 |
| 81 | 81 | 0.251 |
| 82 | 82 | 0.439 |
| 83 | 83 | 0.42 |
| 84 | 84 | 0.837 |
| 85 | 85 | 0.806 |
| 86 | 86 | 0.16 |
| 87 | 87 | 0.00162 |
| 88 | 88 | 0.813 |
| 89 | 89 | 0.325 |
| 9 | 9 | 0.937 |
| 90 | 90 | 0.979 |
| 91 | 91 | 0.32 |
| 92 | 92 | 0.771 |
| 93 | 93 | 0.966 |
| 94 | 94 | 0.889 |
| 95 | 95 | 0.22 |
| 96 | 96 | 0.208 |
| 97 | 97 | 0.517 |
| 98 | 98 | 0.0264 |
| 99 | 99 | 0.0554 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12043
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000169 human smooth muscle cell of the brachiocephalic vasculature sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002589 (smooth muscle cell of the brachiocephalic vasculature)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001529 (brachiocephalic artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0007204 (brachiocephalic vasculature)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000169 (human smooth muscle cell of the brachiocephalic vasculature sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
