FF:11434-118H3: Difference between revisions

Latest revision as of 18:01, 4 June 2020

Name:	Smooth Muscle Cells - Carotid, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12044
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	carotid artery
dev stage	NA
sex	unknown
age	NA
cell type	smooth muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2139
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004958

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12044		CAGE		DRX008482		DRR009354

Accession ID Hg19

Library id		BAM		CTSS
CNhs12044		DRZ000779		DRZ002164

Accession ID Hg38

Library id		BAM		CTSS
CNhs12044		DRZ012129		DRZ013514

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.203
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.179
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.252
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.344
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.588
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.526
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.843
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.898
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.017
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.779
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0714
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0421
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.00607
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.617
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.126
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.692
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.947
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.526
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.41
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12044

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.158
MA0003.1	MA0003.1	0.117
MA0004.1	MA0004.1	0.404
MA0006.1	MA0006.1	0.371
MA0007.1	MA0007.1	0.118
MA0009.1	MA0009.1	0.84
MA0014.1	MA0014.1	0.762
MA0017.1	MA0017.1	0.245
MA0018.2	MA0018.2	0.0768
MA0019.1	MA0019.1	0.302
MA0024.1	MA0024.1	0.00395
MA0025.1	MA0025.1	0.799
MA0027.1	MA0027.1	0.622
MA0028.1	MA0028.1	0.341
MA0029.1	MA0029.1	0.59
MA0030.1	MA0030.1	0.36
MA0031.1	MA0031.1	0.0068
MA0035.2	MA0035.2	0.899
MA0038.1	MA0038.1	0.157
MA0039.2	MA0039.2	0.756
MA0040.1	MA0040.1	0.323
MA0041.1	MA0041.1	0.321
MA0042.1	MA0042.1	0.662
MA0043.1	MA0043.1	0.0954
MA0046.1	MA0046.1	0.752
MA0047.2	MA0047.2	0.693
MA0048.1	MA0048.1	0.428
MA0050.1	MA0050.1	0.00241
MA0051.1	MA0051.1	0.181
MA0052.1	MA0052.1	0.926
MA0055.1	MA0055.1	0.396
MA0057.1	MA0057.1	0.393
MA0058.1	MA0058.1	0.226
MA0059.1	MA0059.1	0.235
MA0060.1	MA0060.1	0.0364
MA0061.1	MA0061.1	0.0819
MA0062.2	MA0062.2	0.0446
MA0065.2	MA0065.2	0.00762
MA0066.1	MA0066.1	0.0751
MA0067.1	MA0067.1	0.0433
MA0068.1	MA0068.1	0.388
MA0069.1	MA0069.1	0.43
MA0070.1	MA0070.1	0.846
MA0071.1	MA0071.1	0.158
MA0072.1	MA0072.1	0.605
MA0073.1	MA0073.1	0.433
MA0074.1	MA0074.1	0.0506
MA0076.1	MA0076.1	0.0938
MA0077.1	MA0077.1	0.376
MA0078.1	MA0078.1	0.149
MA0079.2	MA0079.2	0.635
MA0080.2	MA0080.2	0.00153
MA0081.1	MA0081.1	0.0754
MA0083.1	MA0083.1	0.00148
MA0084.1	MA0084.1	0.872
MA0087.1	MA0087.1	0.59
MA0088.1	MA0088.1	0.482
MA0090.1	MA0090.1	0.232
MA0091.1	MA0091.1	0.165
MA0092.1	MA0092.1	0.243
MA0093.1	MA0093.1	0.382
MA0099.2	MA0099.2	5.31862e-10
MA0100.1	MA0100.1	0.0336
MA0101.1	MA0101.1	0.247
MA0102.2	MA0102.2	0.309
MA0103.1	MA0103.1	0.761
MA0104.2	MA0104.2	0.685
MA0105.1	MA0105.1	0.0418
MA0106.1	MA0106.1	0.117
MA0107.1	MA0107.1	0.142
MA0108.2	MA0108.2	4.17613e-5
MA0111.1	MA0111.1	0.121
MA0112.2	MA0112.2	9.93413e-4
MA0113.1	MA0113.1	0.254
MA0114.1	MA0114.1	0.185
MA0115.1	MA0115.1	0.93
MA0116.1	MA0116.1	0.0469
MA0117.1	MA0117.1	0.532
MA0119.1	MA0119.1	0.146
MA0122.1	MA0122.1	0.671
MA0124.1	MA0124.1	0.344
MA0125.1	MA0125.1	0.396
MA0131.1	MA0131.1	0.388
MA0135.1	MA0135.1	0.522
MA0136.1	MA0136.1	0.00382
MA0137.2	MA0137.2	0.0887
MA0138.2	MA0138.2	0.105
MA0139.1	MA0139.1	0.317
MA0140.1	MA0140.1	0.878
MA0141.1	MA0141.1	0.0377
MA0142.1	MA0142.1	0.3
MA0143.1	MA0143.1	0.427
MA0144.1	MA0144.1	0.634
MA0145.1	MA0145.1	0.125
MA0146.1	MA0146.1	0.0827
MA0147.1	MA0147.1	0.776
MA0148.1	MA0148.1	0.59
MA0149.1	MA0149.1	0.256
MA0150.1	MA0150.1	0.0414
MA0152.1	MA0152.1	0.354
MA0153.1	MA0153.1	0.314
MA0154.1	MA0154.1	0.0402
MA0155.1	MA0155.1	0.0701
MA0156.1	MA0156.1	0.271
MA0157.1	MA0157.1	0.115
MA0159.1	MA0159.1	0.139
MA0160.1	MA0160.1	0.285
MA0162.1	MA0162.1	0.0458
MA0163.1	MA0163.1	4.55564e-4
MA0164.1	MA0164.1	0.504
MA0258.1	MA0258.1	7.72176e-4
MA0259.1	MA0259.1	0.501

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12044

Novel motif	Logo	P-value
1	1	0.464
10	10	0.854
100	100	0.72
101	101	0.127
102	102	0.842
103	103	0.138
104	104	0.323
105	105	0.654
106	106	0.0321
107	107	0.0762
108	108	0.474
109	109	0.0267
11	11	0.0466
110	110	0.153
111	111	0.739
112	112	0.514
113	113	0.279
114	114	0.257
115	115	0.0511
116	116	0.0277
117	117	0.31
118	118	0.605
119	119	0.0867
12	12	0.971
120	120	0.0643
121	121	0.686
122	122	0.794
123	123	0.0885
124	124	0.636
125	125	0.5
126	126	0.61
127	127	0.571
128	128	0.132
129	129	0.622
13	13	0.661
130	130	0.515
131	131	0.659
132	132	0.6
133	133	0.784
134	134	0.781
135	135	0.241
136	136	0.44
137	137	0.696
138	138	0.703
139	139	0.253
14	14	0.628
140	140	0.555
141	141	0.94
142	142	0.655
143	143	0.0178
144	144	0.808
145	145	0.116
146	146	0.11
147	147	0.253
148	148	0.862
149	149	0.412
15	15	0.561
150	150	0.147
151	151	0.619
152	152	0.0437
153	153	0.192
154	154	0.57
155	155	0.362
156	156	0.831
157	157	0.603
158	158	0.169
159	159	0.738
16	16	0.0358
160	160	0.0404
161	161	0.583
162	162	0.696
163	163	0.99
164	164	0.176
165	165	0.122
166	166	0.634
167	167	0.22
168	168	0.86
169	169	0.0404
17	17	0.0935
18	18	0.0194
19	19	0.0708
2	2	0.152
20	20	0.495
21	21	0.366
22	22	0.192
23	23	0.0573
24	24	0.399
25	25	0.691
26	26	0.0202
27	27	0.251
28	28	0.234
29	29	0.158
3	3	0.303
30	30	0.558
31	31	0.354
32	32	1.24549e-7
33	33	0.385
34	34	0.344
35	35	0.395
36	36	0.79
37	37	0.0885
38	38	0.478
39	39	0.196
4	4	0.533
40	40	0.0561
41	41	0.882
42	42	0.72
43	43	0.237
44	44	0.124
45	45	0.332
46	46	0.113
47	47	0.346
48	48	0.145
49	49	0.512
5	5	0.855
50	50	0.476
51	51	0.486
52	52	0.744
53	53	0.428
54	54	0.652
55	55	0.496
56	56	0.355
57	57	0.55
58	58	0.925
59	59	0.00578
6	6	0.706
60	60	0.285
61	61	0.548
62	62	0.554
63	63	0.238
64	64	0.172
65	65	0.0807
66	66	0.741
67	67	0.351
68	68	0.0601
69	69	0.17
7	7	0.84
70	70	0.212
71	71	0.138
72	72	0.977
73	73	0.0163
74	74	0.714
75	75	0.268
76	76	0.688
77	77	0.00454
78	78	0.454
79	79	0.00606
8	8	0.104
80	80	0.995
81	81	0.669
82	82	0.827
83	83	0.126
84	84	0.795
85	85	0.0525
86	86	0.496
87	87	0.0176
88	88	0.299
89	89	0.0301
9	9	0.213
90	90	0.803
91	91	0.369
92	92	0.491
93	93	0.989
94	94	0.885
95	95	0.0181
96	96	0.4
97	97	0.235
98	98	0.675
99	99	0.0472

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12044

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000171 human smooth muscle cell of the carotid artery sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002596 (smooth muscle cell of the carotid artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005396 (carotid artery segment)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000171 (human smooth muscle cell of the carotid artery sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008374
+|DRA_sample_Accession=CAGE@SAMD00004958
-|accession_numbers=CAGE;DRX008482;DRR009354;DRZ000779;DRZ002164
+|accession_numbers=CAGE;DRX008482;DRR009354;DRZ000779;DRZ002164;DRZ012129;DRZ013514
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0005396,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002596
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.07!115.39!SOX17;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!175.04!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.35!54.95!HIC1;;chr22:19748231..19748317,+!p1@TBX1!1.35!21.19!TBX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.32!32.97!TFAP2A;;chr10:94449703..94449718,+!p1@HHEX!1.28!68.29!HHEX;;chr1:8934931..8934947,-!p4@ENO1!1.27!57.30!ENO1;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!21.19!TFAP2A;;chr11:65686802..65686818,+!p6@DRAP1!1.25!29.04!DRAP1;;chr11:34642612..34642646,+!p1@EHF!1.20!14.91!EHF;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!36.89!ZFPM2;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.84!GATA6;;chr9:132427972..132428056,+!p1@PRRX2!1.15!17.27!PRRX2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.13!152.28!ZC3H12A;;chr6:34204921..34204939,+!p3@HMGA1!1.12!368.14!HMGA1;;chr11:65686732..65686756,+!p2@DRAP1!1.10!49.45!DRAP1;;chr8:106330696..106330719,+!p2@ZFPM2!1.10!14.91!ZFPM2;;chr16:86544113..86544145,+!p1@FOXF1!1.07!13.34!FOXF1;;chr5:72744445..72744466,-!p2@FOXD1!1.05!17.27!FOXD1;;chr20:6748325..6748352,+!p1@BMP2!1.05!14.91!BMP2;;chr7:1577899..1577943,+!p3@MAFK!1.05!10.20!MAFK;;chr12:124873357..124873401,-!p1@NCOR2!1.04!116.17!NCOR2;;chr11:46299539..46299620,+!p2@CREB3L1!1.03!16.48!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.34!PRRX1;;chr1:8938709..8938720,-!p3@ENO1!1.02!461.55!ENO1;;chr20:42543441..42543497,+!p1@TOX2!1.02!43.17!TOX2;;chr20:30433396..30433414,-!p1@FOXS1!1.02!9.42!FOXS1;;chr11:65687362..65687436,+!p3@DRAP1!1.00!41.60!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.98!28.26!TWIST2;;chr15:67458491..67458505,+!p18@SMAD3!0.98!8.63!SMAD3;;chr8:72756667..72756736,-!p2@MSC!0.97!13.34!MSC;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.31!CREB3;;chr2:239756739..239756755,+!p2@TWIST2!0.96!14.13!TWIST2;;chr19:13136130..13136165,+!p6@NFIX!0.96!10.99!NFIX;;chr19:42636586..42636607,-!p1@POU2F2!0.95!22.76!POU2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.95!7.85!SMAD3;;chr11:46299186..46299195,+!p3@CREB3L1!0.94!8.63!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.63!PRRX1;;chr11:65687158..65687216,+!p4@DRAP1!0.92!43.17!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.55!GATA6;;chr8:72756267..72756296,-!p4@MSC!0.92!10.99!MSC;;chr17:41622765..41622821,-!p2@ETV4!0.91!10.99!ETV4;;chr15:67458861..67458879,+!p17@SMAD3!0.91!7.06!SMAD3;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.06!HAND2;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.84!NCOA7;;chr7:44143925..44143970,+!p1@AEBP1!0.88!154.63!AEBP1;;chr11:65687222..65687240,+!p7@DRAP1!0.88!8.63!DRAP1;;chr17:1958388..1958404,+!p1@HIC1!0.87!43.17!HIC1;;chr11:120107344..120107351,+!p1@POU2F3!0.87!7.85!POU2F3;;chr7:44143978..44143989,+!p2@AEBP1!0.86!11.77!AEBP1;;chr11:65687243..65687276,+!p8@DRAP1!0.86!8.63!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.06!PRRX1;;chr3:25470156..25470227,+!p2@RARB!0.86!6.28!RARB;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.06!BNC1;;chr12:124873852..124873881,-!p3@NCOR2!0.84!37.68!NCOR2;;chr8:72756063..72756125,-!p1@MSC!0.84!12.56!MSC;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.13!TOX2;;chr1:8926369..8926385,-!p12@ENO1!0.82!7.85!ENO1;;chr15:67418047..67418093,+!p4@SMAD3!0.81!7.06!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.81!5.49!FOXC2;;chr19:46801639..46801699,+!p1@HIF3A!0.81!5.49!HIF3A;;chr11:46333934..46333963,+!p5@CREB3L1!0.81!5.49!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!0.81!5.49!HAND2;;chr19:45252008..45252024,+!p2@BCL3!0.80!18.84!BCL3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.79!398.75!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!149.93!FOSL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.45!PPP1R13L;;chr17:41623009..41623053,-!p4@ETV4!0.79!8.63!ETV4;;chr19:16435625..16435682,+!p1@KLF2!0.77!172.69!KLF2;;chr17:59477233..59477263,+!p1@TBX2!0.77!16.48!TBX2;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.55!FOXD1;;chr1:151032782..151032801,+!p4@MLLT11!0.76!10.20!MLLT11;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.85!ZFP64;;chr8:72756637..72756664,-!p3@MSC!0.76!5.49!MSC;;chr3:25469815..25469866,+!p3@RARB!0.76!4.71!RARB;;chr18:19749517..19749531,+!p3@GATA6!0.75!8.63!GATA6;;chr10:104155455..104155479,+!p1@NFKB2!0.74!73.00!NFKB2;;chr7:19157248..19157268,-!p1@TWIST1!0.73!13.34!TWIST1;;chr7:19157043..19157088,-!p2@TWIST1!0.73!11.77!TWIST1;;chr12:27485762..27485776,+!p3@ARNTL2!0.72!12.56!ARNTL2;;chr12:53848505..53848532,+!p4@PCBP2!0.72!10.20!PCBP2;;chr12:80085061..80085119,-!p6@PAWR!0.72!7.06!PAWR;;chr19:45251943..45252006,+!p1@BCL3!0.71!123.24!BCL3;;chr12:66218598..66218645,+!p2@HMGA2!0.71!21.19!HMGA2;;chr1:8923998..8924033,-!p8@ENO1!0.71!7.85!ENO1;;chr1:23885981..23886002,-!p1@ID3!0.70!799.08!ID3;;chr10:94449675..94449694,+!p2@HHEX!0.70!11.77!HHEX;;chr19:13134772..13134822,+!p2@NFIX!0.70!6.28!NFIX;;chr1:8938736..8938756,-!p1@ENO1!0.69!4958.52!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.69!58.87!CREB3;;chr20:48599506..48599526,+!p1@SNAI1!0.69!28.26!SNAI1;;chr8:55370720..55370733,+!p2@SOX17!0.69!3.92!SOX17;;chr9:132427883..132427951,+!p2@PRRX2!0.69!3.92!PRRX2;;chr9:16705069..16705086,-!p3@BNC2!0.69!3.92!BNC2;;chr15:67458836..67458859,+!p22@SMAD3!0.69!3.92!SMAD3;;chr16:86601052..86601066,+!p4@FOXC2!0.69!3.92!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.69!3.92!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!0.68!10.20!FOXC2;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.52!HMGA1;;chr1:151032860..151032918,+!p1@MLLT11!0.67!51.02!MLLT11;;chr11:615570..615721,-!p2@IRF7!0.67!7.85!IRF7;;chr11:63684602..63684664,-!p1@RCOR2!0.67!7.85!RCOR2;;chr10:104155659..104155676,+!p4@NFKB2!0.67!4.71!NFKB2;;chr1:8938766..8938774,-!p2@ENO1!0.66!288.08!ENO1;;chr11:65430554..65430579,-!p3@RELA!0.66!10.20!RELA;;chr2:121493425..121493474,+!p1@GLI2!0.66!8.63!GLI2;;chr17:38256799..38256815,-!p3@NR1D1!0.66!7.06!NR1D1;;chr12:53614115..53614154,-!p1@RARG!0.65!21.19!RARG;;chr1:151032922..151032951,+!p2@MLLT11!0.65!6.28!MLLT11;;chr12:125002739..125002756,-!p6@NCOR2!0.65!5.49!NCOR2;;chr8:72756213..72756243,-!p5@MSC!0.65!4.71!MSC;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.06!HMGA2;;chr22:38598086..38598105,+!p1@MAFF!0.63!40.82!MAFF;;chr12:66218836..66218888,+!p1@HMGA2!0.63!36.11!HMGA2;;chr10:104154246..104154347,+!p3@NFKB2!0.63!23.55!NFKB2;;chr3:141087393..141087426,+!p3@ZBTB38!0.63!14.91!ZBTB38;;chr17:41623075..41623101,-!p9@ETV4!0.63!3.92!ETV4;;chr9:4300050..4300118,-!p1@GLIS3!0.62!24.33!GLIS3;;chr11:65686952..65686975,+!p5@DRAP1!0.62!20.41!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.62!3.92!DRAP1;;chr2:102091144..102091183,-!p2@RFX8!0.62!3.14!RFX8;;chr1:170632137..170632172,+!p10@PRRX1!0.62!3.14!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.62!3.14!PRRX1;;chr1:2234717..2234744,+!p4@SKI!0.62!3.14!SKI;;chr6:10415263..10415274,-!p8@TFAP2A!0.62!3.14!TFAP2A;;chr7:150945865..150945896,-!p4@SMARCD3!0.62!3.14!SMARCD3;;chr7:27153454..27153469,-!p2@HOXA3!0.62!3.14!HOXA3;;chrY:21906594..21906622,-!p1@KDM5D!0.62!3.14!KDM5D;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.14!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.62!3.14!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.62!3.14!FOXC2;;chr8:72756023..72756055,-!p6@MSC!0.60!3.92!MSC;;chr3:101568349..101568365,+!p1@NFKBIZ!0.59!186.03!NFKBIZ;;chr2:66662281..66662308,+!p1@MEIS1!0.59!11.77!MEIS1;;chr9:4300016..4300039,-!p2@GLIS3!0.59!5.49!GLIS3;;chr20:50179368..50179392,-!p2@NFATC2!0.59!3.92!NFATC2;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.06!HOXB2;;chr4:81118647..81118666,+!p1@PRDM8!0.58!3.92!PRDM8;;chr20:42295745..42295765,+!p1@MYBL2!0.57!54.95!MYBL2;;chr17:46621937..46621966,-!p2@HOXB2!0.57!8.63!HOXB2;;chr21:36260773..36260804,-!p7@RUNX1!0.57!3.92!RUNX1;;chr15:67418119..67418162,+!p5@SMAD3!0.57!3.14!SMAD3;;chr17:46622440..46622477,-!p5@HOXB2!0.57!3.14!HOXB2;;chr8:128748308..128748324,+!p2@MYC!0.56!91.05!MYC;;chr22:38598057..38598071,+!p3@MAFF!0.56!7.06!MAFF;;chr11:65687882..65687902,+!p10@DRAP1!0.56!3.92!DRAP1;;chr4:81105027..81105039,+!p3@PRDM8!0.56!3.14!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!0.56!3.14!TFAP2A;;chr19:58694421..58694485,+!p1@ZNF274!0.55!16.48!ZNF274;;chr19:45261550..45261641,+!p6@BCL3!0.55!4.71!BCL3;;chr3:168864315..168864339,-!p2@MECOM!0.55!4.71!MECOM;;chr9:35732514..35732530,+!p5@CREB3!0.55!3.92!CREB3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.54!35.32!TAX1BP3;;chr17:38256822..38256851,-!p1@NR1D1!0.54!24.33!NR1D1;;chr6:34205372..34205412,+!p5@HMGA1!0.54!15.70!HMGA1;;chr21:30671690..30671762,+!p2@BACH1!0.54!10.20!BACH1;;chr5:321810..321877,+!p1@AHRR!0.54!9.42!AHRR;;chr4:81104985..81105005,+!p4@PRDM8!0.54!3.14!PRDM8;;chr14:24630902..24630948,+!p2@IRF9!0.54!3.14!IRF9;;chr17:59477197..59477212,+!p2@TBX2!0.53!4.71!TBX2;;chr17:41622925..41622976,-!p3@ETV4!0.53!3.92!ETV4;;chr19:13213662..13213686,-!p1@LYL1!0.53!3.92!LYL1;;chr5:72744562..72744573,-!p3@FOXD1!0.53!3.14!FOXD1;;chr6:10415484..10415508,-!p3@TFAP2A!0.53!2.35!TFAP2A;;chr7:27153428..27153440,-!p3@HOXA3!0.53!2.35!HOXA3;;chr7:27170274..27170308,-!p3@HOXA4!0.53!2.35!HOXA4;;chr8:106330848..106330859,+!p5@ZFPM2!0.53!2.35!ZFPM2;;chr8:72755987..72756002,-!p7@MSC!0.53!2.35!MSC;;chr8:77593750..77593757,+!p3@ZFHX4!0.53!2.35!ZFHX4;;chr15:31684643..31684660,+!p18@KLF13!0.53!2.35!KLF13;;chr15:67418099..67418118,+!p16@SMAD3!0.53!2.35!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.53!2.35!SMAD3;;chr18:19749504..19749515,+!p5@GATA6!0.53!2.35!GATA6;;chr19:13136057..13136085,+!p11@NFIX!0.53!2.35!NFIX;;chr19:13213399..13213414,-!p6@LYL1!0.53!2.35!LYL1;;chr19:31840278..31840300,-!p5@TSHZ3!0.53!2.35!TSHZ3;;chrY:2803415..2803468,+!p1@ZFY!0.53!2.35!ZFY;;chr2:172967353..172967365,-!p5@DLX2!0.53!2.35!DLX2;;chr2:85981969..85982019,+!p6@ATOH8!0.53!2.35!ATOH8;;chr3:25469875..25469893,+!p5@RARB!0.53!2.35!RARB;;chr3:25470062..25470084,+!p4@RARB!0.53!2.35!RARB;;chr11:46333979..46333991,+!p7@CREB3L1!0.53!2.35!CREB3L1;;chr11:65668011..65668020,-!p3@FOSL1!0.53!2.35!FOSL1;;chr12:66218420..66218439,+!p12@HMGA2!0.53!2.35!HMGA2;;chr13:37494391..37494406,-!p5@SMAD9!0.53!2.35!SMAD9;;chr19:47523058..47523114,+!p1@NPAS1!0.53!2.35!NPAS1;;chr1:170632115..170632136,+!p9@PRRX1!0.53!2.35!PRRX1;;chr1:2985726..2985752,+!p2@PRDM16!0.53!2.35!PRDM16;;chr20:426020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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002596;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11434-118H3
 |is_a=EFO:0002091;;FF:0000171
 |is_obsolete=
 |library_id=CNhs12044
-|library_id_phase_based=1:CNhs12044
+|library_id_phase_based=2:CNhs12044
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11434
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11434
 |name=Smooth Muscle Cells - Carotid, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12044,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11434-118H3;search_select_hide=table117:FF:11434-118H3
 }}

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FF:11434-118H3: Difference between revisions

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Latest revision as of 18:01, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0