FF:11463-119B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005450 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005450 | ||
|accession_numbers=CAGE;DRX008111;DRR008983;DRZ000408;DRZ001793;DRZ011758;DRZ013143 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037042;DRR041408;DRZ007050 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0002418,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0004755,UBERON:0006444,UBERON:0001995,UBERON:0007844,UBERON:0004715,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002602 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000192 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11463-119B5 | |id=FF:11463-119B5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000192 | ||
|is_obsolete= | |||
|library_id=CNhs12064 | |||
|library_id_phase_based=2:CNhs12064 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11463 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.CTTGTA.11463 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11463 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.CTTGTA.11463 | |||
|name=Anulus Pulposus Cell, donor2 | |name=Anulus Pulposus Cell, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12064,LSID838,release011,COMPLETED | |profile_hcage=CNhs12064,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.25397425737125,0.351640055879754,0,0,0,0,0,0,0,0,0,0,0,0.220838645003429,0,0.911311507039314,0,0,0,0,0,0.201809101115885,0,0,0.087882055224567,0,0,0,0,0,0,0,0,0,0,0,0,0.176808890055662,0.200741430078741,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.220838645003429,0,0.0317526169448403,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.012086729707188,0,0,0,-0.0964569827885293,0.122312805723884,0,0,0,0,-0.0980353512377064,0.122077557924073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203708463005664,0,0,0,-0.0306358713632606,-0.211960850382102,0,0,0.124307696593413,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.0263402302821352,0,-0.349778522158595,-0.143515142523472,0,0,0.0400431612218163,0,0,0,0,0,0,0,0,0,0.0927187780508646,0,0.249354445794628,0,0,0.28277127557219,0,0,-0.084633585894978,0,-0.063838738647795,-0.0683442610773682,0,0,0,0,-0.097667498535903,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,0.294639582660169,-0.04680465889238,0,0,0,0.326307696190646,-0.321431473114434,0,0,-0.0596260034551675,-0.181349618560659,0,0,0.0333448281283092,0,0.3433964345334,0.394009062872532,0,-0.00562181118339775,0,0,0,0,0,0,0,0,0,0,0,0.203061291903531,-0.10614995167554,0,0,0,0,-0.0617272047608969,0,0,0.87148236219456,0.170373504153076,0,-0.102435727312,0,0.422554759447211,0.18644789705181,-0.402462734042754,-0.153128822279576,0.415031276193096,0.477038697289658,0.0676674696587044,0.179952999326084,-0.119252212274507,-0.062392425481489,0.0545794599259768,0,0.314318219687891,0.0948731281830504,0,0,0,-0.130266288358598,0,-0.226358888662787,0.144762784402058,-0.0272283567999867,0.066350630996255,0.0820435079731121,0.020661550852761,0.0757238825748638,0.443861178655053,0.142727660959655,0,0.227741250079256,0.0224348044041769,0,-0.0877514257027229,0.081420599160805,0.378062581444166,-0.191436763498735,0,0.183042955028524,-0.0683442610773682,0.09732288581697,0.0145290060582228,0.0366776471402321,0,0.0149801911196333,0.088243185968093,0,0,-0.0329820779405819,0,0.124307696593413,0.0153844441589142,0.0229409825340682,-0.108547864962131,0,-0.0104071500432505,-0.0308579979619324,0.0025859876787995,0,-0.00101402737685241,0.178843344087212,-0.173766455767879,0.228475712853699,0,0.0336475135565041,0.649875583693686,-0.0237982693797684,0.244625611447768,-0.0584468268118252,-0.168038808211497,-0.0413602349108207,0.191211397419701,0.146675187495553,0.0746206599070054,1.1136220073406,0,-0.0617852971835803,0.0174493086569298,-0.0187517136750868,-0.108093464760213,0.124307696593413,-0.0249544469496186,0,-0.142511193386304,0,0.00244156547740138,-0.173900692995454,-0.439289374580686,-0.122790816330392,0,0.0740037363669223,-0.012086729707188,0,0,0.0534076397279008,0,0.44979703052161,0.270082872874709,-0.211650427864589,0.0987287630554848,0,0.437988296018802,0,0,-0.0888366270735965,-0.235476037764389,0,-0.0982043780318671,-0.24266985573561,0.12072844526183,-0.115971073434934,0,0,0.255176985744691,0,0,0.0610923530214746,0.220838645003429,-0.253250265480847,0.0464406558971868,0,0.136797568081344,0,0,0.122239231418767,0,0.395037286813193,0,0,0.39886417801857,0,0,0,0,0.0438745288108172,0,0,0,0,0,0,0,0.0294446525788326,-0.0550663328325054,0,0,0,0,0,0.124307696593413,0,0,0,0,0.464598793731853,0.0368553325500613,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.0789288655013103,0.299766997383943,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.0248108139973035,0,0,0,0.244155115848145,0,0,0.366533058477786,0.0499632259681728,0.0263272951469837,0,0,0,0,0.150694520471614,0.480851246017393,0,0.0279532053560195,0.398542878063266,-0.0487702229921725,0,0.124307696593413,-0.137039435196474,0,0,0.0286901957544938,0,0,0.173478472592629,0,0,0,0,0,0,-0.0900068158063421,0,0,0.0582796618666286,0,0,0,0,0,0,0,0,0.271286827283871,0.0320836399349031,0,0,0,0,0,0,0,0.808338503806055,0.125089824893482,0,0,0,0,0,0,0,0,0.0910071859009924,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.578972415166096,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000988610557965758,-0.25397425737125,0,0,0,0,0,0,0,0.392187118633414,0,0.124307696593413,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149883498691972,0,0,0,0.725343320761694,0,0.163979510781282,0.133384713840205,0,0,0.100881855786711,0,0,0,0,0,0,0.0308134242681797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.201809101115885,0,0,0.0578506888914451,0,0,0,0,0,0,0.00570901108389801,0.176076307406342,-0.0153021499349124,0,0,0,0.095497926209516,0.220838645003429,0,0.0779849029405592,0,0.0575303091745122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.911311507039314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110419322501715,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286514590209148,0,0,0,0.153446828820743,0,0,0,0,0,0,0,0,0.366533058477786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0388958084726082,0,0,0,0,0,0,0,0,0,0,0.00205372243756418,0,0,0.318310983238732,0,-0.0843766322300271,0,0,0.220838645003429,0,0,0,0,0,0,0,0,0,0,0,0,0.124307696593413,0.200741430078741,0,0,0,0,0.252129886723024,0,0,0,0,0,0,0.475436439469359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346553505567745,0,0,0.538830696444161,0,0,0.0193807087178259,0,0,0,0,0,0,0,0,0,0.0629875174432871,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0573821297800334,-0.211960850382102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4815 | |rna_catalog_number=SC4815 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=119B5 | |rna_tube_id=119B5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.CTTGTA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.2275570857826e-216!GO:0005737;cytoplasm;5.96465739217229e-196!GO:0043226;organelle;9.73287327627085e-169!GO:0043229;intracellular organelle;1.83685851780262e-168!GO:0043231;intracellular membrane-bound organelle;1.83685851780262e-168!GO:0043227;membrane-bound organelle;3.84293475532049e-168!GO:0044444;cytoplasmic part;3.64193170136027e-152!GO:0044422;organelle part;7.96558792245989e-117!GO:0044446;intracellular organelle part;1.79043535636767e-115!GO:0044237;cellular metabolic process;8.68459531494171e-81!GO:0044238;primary metabolic process;5.24776445355383e-80!GO:0032991;macromolecular complex;1.95507127589786e-76!GO:0030529;ribonucleoprotein complex;1.97212856338506e-74!GO:0005515;protein binding;7.12621245279647e-71!GO:0043170;macromolecule metabolic process;1.31579690228111e-70!GO:0005739;mitochondrion;2.43401136914332e-70!GO:0043233;organelle lumen;2.47806946406271e-59!GO:0031974;membrane-enclosed lumen;2.47806946406271e-59!GO:0031090;organelle membrane;1.21888304380987e-55!GO:0003723;RNA binding;3.92846689071207e-53!GO:0005840;ribosome;4.55032502035863e-51!GO:0005634;nucleus;1.23159836748471e-49!GO:0044428;nuclear part;1.78761860421082e-49!GO:0019538;protein metabolic process;2.89159190512514e-49!GO:0044429;mitochondrial part;2.48742620574778e-47!GO:0003735;structural constituent of ribosome;3.45880458464739e-45!GO:0044260;cellular macromolecule metabolic process;8.41132515070026e-45!GO:0006412;translation;4.03762739324758e-44!GO:0044267;cellular protein metabolic process;4.17620191955278e-43!GO:0015031;protein transport;1.79974690181037e-42!GO:0009058;biosynthetic process;2.54090157646592e-42!GO:0016043;cellular component organization and biogenesis;7.88229200186174e-42!GO:0033036;macromolecule localization;1.48868499747336e-41!GO:0005829;cytosol;2.02331623762921e-40!GO:0045184;establishment of protein localization;8.8655658197496e-40!GO:0033279;ribosomal subunit;1.54987576173943e-39!GO:0008104;protein localization;1.54987576173943e-39!GO:0009059;macromolecule biosynthetic process;2.09552752117929e-38!GO:0043234;protein complex;5.06415642459844e-37!GO:0031967;organelle envelope;1.16089371297553e-36!GO:0044249;cellular biosynthetic process;2.58010705666191e-36!GO:0031975;envelope;2.61824503558877e-36!GO:0010467;gene expression;2.16773879179746e-34!GO:0043283;biopolymer metabolic process;9.9141877431109e-34!GO:0006396;RNA processing;1.09566078906061e-32!GO:0005740;mitochondrial envelope;1.47880413645654e-31!GO:0031981;nuclear lumen;1.5666102901005e-31!GO:0031966;mitochondrial membrane;6.99042698817229e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.53209838716053e-29!GO:0046907;intracellular transport;8.98344690442029e-29!GO:0016071;mRNA metabolic process;9.20130031408749e-29!GO:0019866;organelle inner membrane;2.21615729214101e-28!GO:0006886;intracellular protein transport;1.42355351621282e-27!GO:0005743;mitochondrial inner membrane;2.28660954331528e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.8803824209052e-27!GO:0065003;macromolecular complex assembly;3.23819549970987e-26!GO:0008380;RNA splicing;5.71559103978908e-26!GO:0006397;mRNA processing;5.30784191325671e-24!GO:0005783;endoplasmic reticulum;7.47403021297978e-24!GO:0022607;cellular component assembly;1.15750837153057e-23!GO:0006119;oxidative phosphorylation;1.44023477497291e-23!GO:0044445;cytosolic part;5.56231383423663e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.68647107407873e-22!GO:0006996;organelle organization and biogenesis;8.76781751754715e-22!GO:0012505;endomembrane system;1.37736421692453e-21!GO:0044455;mitochondrial membrane part;1.46503495517248e-21!GO:0015935;small ribosomal subunit;1.4044367894506e-20!GO:0006457;protein folding;2.40664733858971e-20!GO:0005794;Golgi apparatus;4.0047903584981e-20!GO:0015934;large ribosomal subunit;4.72403778152737e-20!GO:0031980;mitochondrial lumen;4.84937771528014e-20!GO:0005759;mitochondrial matrix;4.84937771528014e-20!GO:0043228;non-membrane-bound organelle;7.58438502831126e-20!GO:0043232;intracellular non-membrane-bound organelle;7.58438502831126e-20!GO:0005654;nucleoplasm;2.91460515325605e-19!GO:0044432;endoplasmic reticulum part;4.24025828573893e-19!GO:0048770;pigment granule;7.13125688840987e-19!GO:0042470;melanosome;7.13125688840987e-19!GO:0005746;mitochondrial respiratory chain;1.12374942480001e-18!GO:0051649;establishment of cellular localization;3.0700929550401e-18!GO:0051186;cofactor metabolic process;3.38185181803547e-18!GO:0051641;cellular localization;5.130271602543e-18!GO:0005681;spliceosome;2.4521898755393e-17!GO:0008134;transcription factor binding;6.27809231035597e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.42150353230457e-17!GO:0044451;nucleoplasm part;2.88771556982783e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.77370614524322e-16!GO:0003954;NADH dehydrogenase activity;4.77370614524322e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.77370614524322e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.94311345074394e-15!GO:0006512;ubiquitin cycle;2.28502169325151e-15!GO:0016874;ligase activity;4.11844099721637e-15!GO:0003676;nucleic acid binding;4.55951331905208e-15!GO:0016192;vesicle-mediated transport;4.7935786455362e-15!GO:0022618;protein-RNA complex assembly;6.57609069020006e-15!GO:0016462;pyrophosphatase activity;6.77530459682405e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.36454420738165e-15!GO:0044265;cellular macromolecule catabolic process;8.55070483981271e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.01153570604473e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.09978041574452e-14!GO:0043285;biopolymer catabolic process;2.15415951857089e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.16304152964836e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.20208376094689e-14!GO:0042773;ATP synthesis coupled electron transport;2.20208376094689e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.70981776234901e-14!GO:0045271;respiratory chain complex I;2.70981776234901e-14!GO:0005747;mitochondrial respiratory chain complex I;2.70981776234901e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.01226896405833e-14!GO:0006605;protein targeting;4.3194106811095e-14!GO:0019941;modification-dependent protein catabolic process;4.4239267763943e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.4239267763943e-14!GO:0006511;ubiquitin-dependent protein catabolic process;4.48780523932351e-14!GO:0044257;cellular protein catabolic process;4.75330926439511e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.36307016463344e-14!GO:0017111;nucleoside-triphosphatase activity;5.36307016463344e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.62318831087382e-14!GO:0048193;Golgi vesicle transport;6.0563041918175e-14!GO:0051082;unfolded protein binding;7.66245042027497e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.67606212176472e-14!GO:0006732;coenzyme metabolic process;9.33226981030903e-14!GO:0005789;endoplasmic reticulum membrane;9.70545129936666e-14!GO:0005761;mitochondrial ribosome;1.11695420957585e-13!GO:0000313;organellar ribosome;1.11695420957585e-13!GO:0044248;cellular catabolic process;1.20976121354963e-13!GO:0009057;macromolecule catabolic process;1.99759952267519e-13!GO:0016070;RNA metabolic process;2.04009146441849e-13!GO:0005793;ER-Golgi intermediate compartment;2.62711682861999e-13!GO:0006259;DNA metabolic process;5.8381755794747e-13!GO:0005730;nucleolus;6.40678828469114e-13!GO:0030163;protein catabolic process;8.57855181110255e-13!GO:0008135;translation factor activity, nucleic acid binding;3.12183638959476e-12!GO:0043412;biopolymer modification;3.26236202235857e-12!GO:0009055;electron carrier activity;3.65198024503375e-12!GO:0000166;nucleotide binding;4.86190625979097e-12!GO:0016491;oxidoreductase activity;1.48227376345379e-11!GO:0006464;protein modification process;4.34018406075228e-11!GO:0003743;translation initiation factor activity;3.38252674111174e-10!GO:0012501;programmed cell death;3.54790757839149e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.69710670589455e-10!GO:0000375;RNA splicing, via transesterification reactions;3.69710670589455e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.69710670589455e-10!GO:0048523;negative regulation of cellular process;4.11508431459365e-10!GO:0003712;transcription cofactor activity;4.81508839982979e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.81508839982979e-10!GO:0006413;translational initiation;8.22153346367218e-10!GO:0006915;apoptosis;9.06027418712009e-10!GO:0009150;purine ribonucleotide metabolic process;1.72844643077261e-09!GO:0008219;cell death;1.78863956543079e-09!GO:0016265;death;1.78863956543079e-09!GO:0006163;purine nucleotide metabolic process;1.88797964372901e-09!GO:0009060;aerobic respiration;2.25975985803727e-09!GO:0009259;ribonucleotide metabolic process;2.34758585219466e-09!GO:0045333;cellular respiration;2.72416771386294e-09!GO:0044431;Golgi apparatus part;3.27110512919738e-09!GO:0006446;regulation of translational initiation;3.35191079850244e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.43563336417987e-09!GO:0006091;generation of precursor metabolites and energy;4.14989819811227e-09!GO:0005768;endosome;4.28656815118114e-09!GO:0043687;post-translational protein modification;4.86469961866837e-09!GO:0008565;protein transporter activity;5.12843818346299e-09!GO:0051188;cofactor biosynthetic process;5.542005543434e-09!GO:0017038;protein import;9.62823903398737e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.00699478965309e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.06700290810214e-08!GO:0008639;small protein conjugating enzyme activity;1.11392139008413e-08!GO:0006164;purine nucleotide biosynthetic process;1.13799513415438e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.19207743174334e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.19207743174334e-08!GO:0007049;cell cycle;1.30794895111705e-08!GO:0006461;protein complex assembly;1.3535904265212e-08!GO:0050794;regulation of cellular process;1.45859979578781e-08!GO:0030120;vesicle coat;1.75837624314791e-08!GO:0030662;coated vesicle membrane;1.75837624314791e-08!GO:0015986;ATP synthesis coupled proton transport;1.77667091754685e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.77667091754685e-08!GO:0006913;nucleocytoplasmic transport;1.77667091754685e-08!GO:0048475;coated membrane;1.82284512828005e-08!GO:0030117;membrane coat;1.82284512828005e-08!GO:0009141;nucleoside triphosphate metabolic process;1.82375291543221e-08!GO:0004842;ubiquitin-protein ligase activity;1.90852338168451e-08!GO:0009056;catabolic process;2.11806115923208e-08!GO:0048519;negative regulation of biological process;2.35449738889107e-08!GO:0016604;nuclear body;2.35449738889107e-08!GO:0009260;ribonucleotide biosynthetic process;3.05958700838888e-08!GO:0051169;nuclear transport;3.87358595429635e-08!GO:0019829;cation-transporting ATPase activity;4.38604899394098e-08!GO:0017076;purine nucleotide binding;4.89185168243777e-08!GO:0019787;small conjugating protein ligase activity;5.68741917775336e-08!GO:0046034;ATP metabolic process;5.84167069774429e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.34795167547219e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.34795167547219e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.74494461512636e-08!GO:0006366;transcription from RNA polymerase II promoter;6.85616147677431e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.97830453260378e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.00310394076945e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.00310394076945e-08!GO:0016023;cytoplasmic membrane-bound vesicle;9.45160570734626e-08!GO:0042254;ribosome biogenesis and assembly;1.00042698411471e-07!GO:0031988;membrane-bound vesicle;1.04760427755942e-07!GO:0006099;tricarboxylic acid cycle;1.13690887573065e-07!GO:0046356;acetyl-CoA catabolic process;1.13690887573065e-07!GO:0032553;ribonucleotide binding;1.13854591527995e-07!GO:0032555;purine ribonucleotide binding;1.13854591527995e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.69775349142909e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.96268670275358e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.28561652220876e-07!GO:0051187;cofactor catabolic process;2.5393056167872e-07!GO:0051246;regulation of protein metabolic process;2.89140932891386e-07!GO:0031965;nuclear membrane;2.89395550141336e-07!GO:0006754;ATP biosynthetic process;2.98456929413413e-07!GO:0006753;nucleoside phosphate metabolic process;2.98456929413413e-07!GO:0031982;vesicle;3.08093395500859e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.21090517491851e-07!GO:0031410;cytoplasmic vesicle;3.40745827627778e-07!GO:0005788;endoplasmic reticulum lumen;3.95850822567275e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.44080896250616e-07!GO:0003924;GTPase activity;4.91371210729934e-07!GO:0006084;acetyl-CoA metabolic process;5.13628609929147e-07!GO:0005635;nuclear envelope;5.36439669061555e-07!GO:0016881;acid-amino acid ligase activity;5.52635138426905e-07!GO:0000139;Golgi membrane;5.88003007173284e-07!GO:0009109;coenzyme catabolic process;5.88003007173284e-07!GO:0005773;vacuole;6.50790021446264e-07!GO:0009108;coenzyme biosynthetic process;6.65565118701547e-07!GO:0009117;nucleotide metabolic process;9.21107278557561e-07!GO:0044440;endosomal part;1.01158939655693e-06!GO:0010008;endosome membrane;1.01158939655693e-06!GO:0016887;ATPase activity;1.0283506878724e-06!GO:0045259;proton-transporting ATP synthase complex;1.04243249450377e-06!GO:0042623;ATPase activity, coupled;1.09606390254733e-06!GO:0008654;phospholipid biosynthetic process;1.12765164170767e-06!GO:0006323;DNA packaging;1.14146481902315e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.14185913384139e-06!GO:0042981;regulation of apoptosis;1.53620636312537e-06!GO:0016853;isomerase activity;1.54394166280001e-06!GO:0043067;regulation of programmed cell death;1.56222310247132e-06!GO:0050789;regulation of biological process;1.57999281265993e-06!GO:0006974;response to DNA damage stimulus;1.73301417869177e-06!GO:0043069;negative regulation of programmed cell death;2.02040805505457e-06!GO:0005770;late endosome;2.20089206635872e-06!GO:0008361;regulation of cell size;2.23672229469761e-06!GO:0016049;cell growth;2.44096005631035e-06!GO:0043066;negative regulation of apoptosis;2.47505085400335e-06!GO:0016607;nuclear speck;2.56334396951355e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.71291497192022e-06!GO:0005798;Golgi-associated vesicle;3.14585987453366e-06!GO:0044453;nuclear membrane part;3.20921089352768e-06!GO:0031324;negative regulation of cellular metabolic process;3.83846179312896e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.13350525757035e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.13350525757035e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.13350525757035e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.29348615266639e-06!GO:0006399;tRNA metabolic process;4.67327309262859e-06!GO:0045786;negative regulation of progression through cell cycle;5.27162133380045e-06!GO:0006606;protein import into nucleus;5.43398665887727e-06!GO:0051170;nuclear import;5.46366307481619e-06!GO:0051726;regulation of cell cycle;5.46366307481619e-06!GO:0022402;cell cycle process;5.69260760979634e-06!GO:0000074;regulation of progression through cell cycle;6.09801596228123e-06!GO:0003713;transcription coactivator activity;6.1317864700654e-06!GO:0016563;transcription activator activity;6.33736708128145e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.50190274293157e-06!GO:0000323;lytic vacuole;6.58747764919527e-06!GO:0005764;lysosome;6.58747764919527e-06!GO:0044262;cellular carbohydrate metabolic process;6.81789423402913e-06!GO:0043038;amino acid activation;7.40574009397956e-06!GO:0006418;tRNA aminoacylation for protein translation;7.40574009397956e-06!GO:0043039;tRNA aminoacylation;7.40574009397956e-06!GO:0030554;adenyl nucleotide binding;7.99200816622244e-06!GO:0051276;chromosome organization and biogenesis;8.28489407544182e-06!GO:0005762;mitochondrial large ribosomal subunit;9.62973025229466e-06!GO:0000315;organellar large ribosomal subunit;9.62973025229466e-06!GO:0031252;leading edge;9.80901586798341e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.8366539713344e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.01852177670119e-05!GO:0009892;negative regulation of metabolic process;1.03590926567501e-05!GO:0030133;transport vesicle;1.07002509931218e-05!GO:0001558;regulation of cell growth;1.1146503463279e-05!GO:0016859;cis-trans isomerase activity;1.11832174342556e-05!GO:0065004;protein-DNA complex assembly;1.11832174342556e-05!GO:0005524;ATP binding;1.22899720503423e-05!GO:0006916;anti-apoptosis;1.22899720503423e-05!GO:0032559;adenyl ribonucleotide binding;1.44394121917413e-05!GO:0000151;ubiquitin ligase complex;1.53556984689847e-05!GO:0007005;mitochondrion organization and biogenesis;1.57432203476941e-05!GO:0043566;structure-specific DNA binding;1.71833251042481e-05!GO:0006793;phosphorus metabolic process;1.84339675104978e-05!GO:0006796;phosphate metabolic process;1.84339675104978e-05!GO:0004298;threonine endopeptidase activity;1.86794778311199e-05!GO:0006752;group transfer coenzyme metabolic process;2.00034452423285e-05!GO:0016564;transcription repressor activity;2.20028738228672e-05!GO:0065002;intracellular protein transport across a membrane;2.20640502250989e-05!GO:0005667;transcription factor complex;2.24770519072808e-05!GO:0019843;rRNA binding;2.33725093655272e-05!GO:0006613;cotranslational protein targeting to membrane;2.63261656842718e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.63261656842718e-05!GO:0032446;protein modification by small protein conjugation;3.19691562213437e-05!GO:0006364;rRNA processing;3.40597586471756e-05!GO:0016568;chromatin modification;3.40982588119372e-05!GO:0005905;coated pit;3.69561657759859e-05!GO:0016567;protein ubiquitination;3.82156324112012e-05!GO:0016787;hydrolase activity;3.83412664629595e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.8519041551671e-05!GO:0008610;lipid biosynthetic process;4.03170118159653e-05!GO:0000245;spliceosome assembly;4.07344986210058e-05!GO:0006333;chromatin assembly or disassembly;4.21765888749012e-05!GO:0016481;negative regulation of transcription;4.43636373388873e-05!GO:0003697;single-stranded DNA binding;4.62723862116317e-05!GO:0008026;ATP-dependent helicase activity;4.70987866151672e-05!GO:0019867;outer membrane;4.74269362309875e-05!GO:0005643;nuclear pore;5.39201898471205e-05!GO:0016072;rRNA metabolic process;5.70695269213154e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;5.98090532522921e-05!GO:0009719;response to endogenous stimulus;6.0412622377972e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.78500186957635e-05!GO:0004386;helicase activity;7.38558030196377e-05!GO:0046474;glycerophospholipid biosynthetic process;7.61450522956792e-05!GO:0031968;organelle outer membrane;7.61450522956792e-05!GO:0005769;early endosome;7.61450522956792e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.95402048748834e-05!GO:0006281;DNA repair;8.05366491540893e-05!GO:0051789;response to protein stimulus;8.49906170257131e-05!GO:0006986;response to unfolded protein;8.49906170257131e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.33272071983772e-05!GO:0030867;rough endoplasmic reticulum membrane;9.78508330471453e-05!GO:0045454;cell redox homeostasis;0.000113753413452399!GO:0016126;sterol biosynthetic process;0.000118837592794667!GO:0003714;transcription corepressor activity;0.000132240346205942!GO:0005741;mitochondrial outer membrane;0.000149650137410711!GO:0019222;regulation of metabolic process;0.000151533062152367!GO:0019899;enzyme binding;0.00017429406298474!GO:0016044;membrane organization and biogenesis;0.000176954607804489!GO:0005525;GTP binding;0.000185847021193084!GO:0000278;mitotic cell cycle;0.000197582551863427!GO:0016740;transferase activity;0.000199297448534589!GO:0043021;ribonucleoprotein binding;0.000215922971151003!GO:0000314;organellar small ribosomal subunit;0.000223680770047678!GO:0005763;mitochondrial small ribosomal subunit;0.000223680770047678!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000223972815560769!GO:0051427;hormone receptor binding;0.000233138052130471!GO:0030029;actin filament-based process;0.000233138052130471!GO:0046930;pore complex;0.000236647379188494!GO:0016310;phosphorylation;0.000256639777991081!GO:0030663;COPI coated vesicle membrane;0.000288082411102397!GO:0030126;COPI vesicle coat;0.000288082411102397!GO:0046467;membrane lipid biosynthetic process;0.000297345180037858!GO:0004576;oligosaccharyl transferase activity;0.000297352646380046!GO:0043623;cellular protein complex assembly;0.000346176049542198!GO:0005791;rough endoplasmic reticulum;0.000361585314016584!GO:0040008;regulation of growth;0.000373744874965118!GO:0008250;oligosaccharyl transferase complex;0.000383275282419716!GO:0005048;signal sequence binding;0.00038619977105866!GO:0000785;chromatin;0.00039269324151213!GO:0006695;cholesterol biosynthetic process;0.000405775792961594!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000466797603955231!GO:0035257;nuclear hormone receptor binding;0.000471697545346435!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000522620522556802!GO:0048522;positive regulation of cellular process;0.000529129297957469!GO:0030137;COPI-coated vesicle;0.000541418318487127!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000543669064686322!GO:0007243;protein kinase cascade;0.0005598047454461!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00065784011838921!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000713278604657361!GO:0065007;biological regulation;0.000713278604657361!GO:0006118;electron transport;0.000714616384350446!GO:0006334;nucleosome assembly;0.000726955291618921!GO:0032561;guanyl ribonucleotide binding;0.000742726675275893!GO:0019001;guanyl nucleotide binding;0.000742726675275893!GO:0050657;nucleic acid transport;0.000757787475245176!GO:0051236;establishment of RNA localization;0.000757787475245176!GO:0050658;RNA transport;0.000757787475245176!GO:0005885;Arp2/3 protein complex;0.000768885628464922!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000823206552361099!GO:0051920;peroxiredoxin activity;0.00082426951450398!GO:0031497;chromatin assembly;0.000859727567114966!GO:0004177;aminopeptidase activity;0.000894794043102201!GO:0030118;clathrin coat;0.000937113721478465!GO:0008154;actin polymerization and/or depolymerization;0.000937113721478465!GO:0006403;RNA localization;0.00101363487793495!GO:0008092;cytoskeletal protein binding;0.0010903489068031!GO:0050662;coenzyme binding;0.00113410823684983!GO:0005694;chromosome;0.00116415863687173!GO:0006612;protein targeting to membrane;0.00116726015993867!GO:0051128;regulation of cellular component organization and biogenesis;0.00117887756633847!GO:0018196;peptidyl-asparagine modification;0.0011948243063428!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0011948243063428!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00120483666127076!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00120483666127076!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00120483666127076!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00123887482147043!GO:0009165;nucleotide biosynthetic process;0.00128418785008009!GO:0043284;biopolymer biosynthetic process;0.0013360119591323!GO:0051287;NAD binding;0.00135892334215677!GO:0005813;centrosome;0.00136677474057851!GO:0003724;RNA helicase activity;0.00138571861579918!GO:0030132;clathrin coat of coated pit;0.0015034905038033!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00155812878086654!GO:0015399;primary active transmembrane transporter activity;0.00155812878086654!GO:0046489;phosphoinositide biosynthetic process;0.0015704070621667!GO:0045892;negative regulation of transcription, DNA-dependent;0.00160557039982843!GO:0006979;response to oxidative stress;0.00163526457486418!GO:0006260;DNA replication;0.00172861331385317!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00173493465571654!GO:0015002;heme-copper terminal oxidase activity;0.00173493465571654!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00173493465571654!GO:0004129;cytochrome-c oxidase activity;0.00173493465571654!GO:0003729;mRNA binding;0.00184167945150105!GO:0006414;translational elongation;0.00185133026204785!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00194070794244554!GO:0016779;nucleotidyltransferase activity;0.00199343795775243!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00204296797038484!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00204296797038484!GO:0019752;carboxylic acid metabolic process;0.0020445993553256!GO:0006650;glycerophospholipid metabolic process;0.00204539764963408!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00209324917637342!GO:0006082;organic acid metabolic process;0.00209557276809776!GO:0015630;microtubule cytoskeleton;0.00220806967490206!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00224938878068389!GO:0005581;collagen;0.0022748949060189!GO:0030041;actin filament polymerization;0.0023099568514169!GO:0007050;cell cycle arrest;0.0023099568514169!GO:0030658;transport vesicle membrane;0.00245549138037134!GO:0043488;regulation of mRNA stability;0.00247166273594274!GO:0043487;regulation of RNA stability;0.00247166273594274!GO:0043681;protein import into mitochondrion;0.00257018652501134!GO:0022890;inorganic cation transmembrane transporter activity;0.00259601295083998!GO:0006891;intra-Golgi vesicle-mediated transport;0.00259779862580083!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00261073617504892!GO:0007010;cytoskeleton organization and biogenesis;0.00268896894164334!GO:0005815;microtubule organizing center;0.00277363295852908!GO:0031902;late endosome membrane;0.00293938117935942!GO:0045045;secretory pathway;0.00318714395961942!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00320745265056813!GO:0033043;regulation of organelle organization and biogenesis;0.00320745265056813!GO:0006509;membrane protein ectodomain proteolysis;0.00323905479978223!GO:0033619;membrane protein proteolysis;0.00323905479978223!GO:0007264;small GTPase mediated signal transduction;0.00340383874851229!GO:0051252;regulation of RNA metabolic process;0.00344091206529785!GO:0030119;AP-type membrane coat adaptor complex;0.00355036506588892!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00375284661064143!GO:0031072;heat shock protein binding;0.00404665891109499!GO:0030659;cytoplasmic vesicle membrane;0.00412080655823866!GO:0048500;signal recognition particle;0.0041500563459779!GO:0016408;C-acyltransferase activity;0.00420845335498152!GO:0030176;integral to endoplasmic reticulum membrane;0.00432638723524177!GO:0003899;DNA-directed RNA polymerase activity;0.00444863550915639!GO:0045941;positive regulation of transcription;0.00475898982511703!GO:0044427;chromosomal part;0.00480252078711605!GO:0030027;lamellipodium;0.00508797891520922!GO:0048468;cell development;0.00508797891520922!GO:0006778;porphyrin metabolic process;0.00514656076256634!GO:0033013;tetrapyrrole metabolic process;0.00514656076256634!GO:0048471;perinuclear region of cytoplasm;0.00521380348069032!GO:0051329;interphase of mitotic cell cycle;0.00529670008297877!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00531017648481631!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00532100804956008!GO:0030131;clathrin adaptor complex;0.00576159297781401!GO:0051028;mRNA transport;0.00576354042680569!GO:0006740;NADPH regeneration;0.00579257977019791!GO:0006098;pentose-phosphate shunt;0.00579257977019791!GO:0065009;regulation of a molecular function;0.0061598416088373!GO:0007040;lysosome organization and biogenesis;0.00618364312163921!GO:0006818;hydrogen transport;0.00629964816184068!GO:0003690;double-stranded DNA binding;0.0063468587182253!GO:0001726;ruffle;0.0064864955369751!GO:0030134;ER to Golgi transport vesicle;0.00664782597431638!GO:0015992;proton transport;0.00664782597431638!GO:0017166;vinculin binding;0.00690984391610054!GO:0030660;Golgi-associated vesicle membrane;0.00697365565818999!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00721864069979503!GO:0016860;intramolecular oxidoreductase activity;0.00736155067162244!GO:0005869;dynactin complex;0.00739089337103132!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00739089337103132!GO:0006626;protein targeting to mitochondrion;0.00742069664968536!GO:0048487;beta-tubulin binding;0.00793053311884869!GO:0051325;interphase;0.00805605414971876!GO:0005774;vacuolar membrane;0.008126743942114!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00822747932703542!GO:0043492;ATPase activity, coupled to movement of substances;0.00836664491577695!GO:0031625;ubiquitin protein ligase binding;0.0086394261890366!GO:0042168;heme metabolic process;0.00865968519971757!GO:0007033;vacuole organization and biogenesis;0.00870305193287487!GO:0030521;androgen receptor signaling pathway;0.00877253783999633!GO:0006595;polyamine metabolic process;0.00878774870014252!GO:0030127;COPII vesicle coat;0.00878774870014252!GO:0012507;ER to Golgi transport vesicle membrane;0.00878774870014252!GO:0045893;positive regulation of transcription, DNA-dependent;0.0088013137271633!GO:0016197;endosome transport;0.00915894259045933!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0092186234726501!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00933583180183573!GO:0045047;protein targeting to ER;0.00933583180183573!GO:0033673;negative regulation of kinase activity;0.00950291059222566!GO:0006469;negative regulation of protein kinase activity;0.00950291059222566!GO:0030125;clathrin vesicle coat;0.00960589608587815!GO:0030665;clathrin coated vesicle membrane;0.00960589608587815!GO:0044433;cytoplasmic vesicle part;0.00992442485827453!GO:0006897;endocytosis;0.00992442485827453!GO:0010324;membrane invagination;0.00992442485827453!GO:0008180;signalosome;0.00992442485827453!GO:0006733;oxidoreduction coenzyme metabolic process;0.0101857766370466!GO:0006643;membrane lipid metabolic process;0.0101857766370466!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0101857766370466!GO:0030145;manganese ion binding;0.0101857766370466!GO:0042158;lipoprotein biosynthetic process;0.0101857766370466!GO:0006769;nicotinamide metabolic process;0.0102872723938535!GO:0048037;cofactor binding;0.0105410488011882!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0107219425082778!GO:0048518;positive regulation of biological process;0.0109358779573584!GO:0044420;extracellular matrix part;0.0109995730173991!GO:0051101;regulation of DNA binding;0.0111079442243853!GO:0030384;phosphoinositide metabolic process;0.0116226920385176!GO:0006402;mRNA catabolic process;0.0116832467462552!GO:0044255;cellular lipid metabolic process;0.0117395008425916!GO:0030199;collagen fibril organization;0.0120553073329409!GO:0009081;branched chain family amino acid metabolic process;0.0121631801182821!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0122155521309849!GO:0030308;negative regulation of cell growth;0.0122674034646045!GO:0045792;negative regulation of cell size;0.0123502616968407!GO:0051539;4 iron, 4 sulfur cluster binding;0.0127332747909618!GO:0007006;mitochondrial membrane organization and biogenesis;0.0127539383248944!GO:0000059;protein import into nucleus, docking;0.0127857212970337!GO:0006506;GPI anchor biosynthetic process;0.0127947109698374!GO:0006383;transcription from RNA polymerase III promoter;0.0127947109698374!GO:0051348;negative regulation of transferase activity;0.0130876686303389!GO:0008312;7S RNA binding;0.0130876686303389!GO:0031323;regulation of cellular metabolic process;0.0130890281970883!GO:0042802;identical protein binding;0.013208967943199!GO:0031529;ruffle organization and biogenesis;0.0132406023730685!GO:0008139;nuclear localization sequence binding;0.0132502876658743!GO:0030833;regulation of actin filament polymerization;0.0132764074909653!GO:0005975;carbohydrate metabolic process;0.0132842319548512!GO:0006497;protein amino acid lipidation;0.0135171750269252!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0135637687859182!GO:0006066;alcohol metabolic process;0.013803317567554!GO:0046483;heterocycle metabolic process;0.0138831745532472!GO:0006779;porphyrin biosynthetic process;0.0140439875113023!GO:0033014;tetrapyrrole biosynthetic process;0.0140439875113023!GO:0030880;RNA polymerase complex;0.0140788397080822!GO:0006505;GPI anchor metabolic process;0.0141489692616324!GO:0030518;steroid hormone receptor signaling pathway;0.0141611524304114!GO:0009967;positive regulation of signal transduction;0.0145773519158128!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0147649126624545!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0149380328840154!GO:0016125;sterol metabolic process;0.0152207125562797!GO:0035035;histone acetyltransferase binding;0.0152465884445439!GO:0043022;ribosome binding;0.0152918133151899!GO:0005684;U2-dependent spliceosome;0.0156322528935843!GO:0032535;regulation of cellular component size;0.015905499746873!GO:0006352;transcription initiation;0.0162084830377246!GO:0030832;regulation of actin filament length;0.0162924479248365!GO:0031901;early endosome membrane;0.0163725024638721!GO:0051087;chaperone binding;0.0169586971112209!GO:0008286;insulin receptor signaling pathway;0.0174216441531728!GO:0006739;NADP metabolic process;0.0176289978412086!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0178698170401203!GO:0005100;Rho GTPase activator activity;0.0180908064933645!GO:0008186;RNA-dependent ATPase activity;0.0181905447543033!GO:0003711;transcription elongation regulator activity;0.0181970412817999!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0182991297314347!GO:0012506;vesicle membrane;0.0183496998185279!GO:0051540;metal cluster binding;0.0184326581059916!GO:0051536;iron-sulfur cluster binding;0.0184326581059916!GO:0044437;vacuolar part;0.0184419241728039!GO:0032940;secretion by cell;0.0191542466044916!GO:0030031;cell projection biogenesis;0.0194960407198385!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0196511500211261!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0196511500211261!GO:0006892;post-Golgi vesicle-mediated transport;0.0197239098587949!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0202769412517436!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0210368179753256!GO:0019362;pyridine nucleotide metabolic process;0.0210594890718798!GO:0006644;phospholipid metabolic process;0.0214507994258904!GO:0006693;prostaglandin metabolic process;0.0216500531051127!GO:0006692;prostanoid metabolic process;0.0216500531051127!GO:0031543;peptidyl-proline dioxygenase activity;0.0218168844750906!GO:0044438;microbody part;0.0219371348060092!GO:0044439;peroxisomal part;0.0219371348060092!GO:0035258;steroid hormone receptor binding;0.022551749434622!GO:0005765;lysosomal membrane;0.0226079796831917!GO:0006783;heme biosynthetic process;0.0232212538867751!GO:0000339;RNA cap binding;0.0232212538867751!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0232339438874402!GO:0006635;fatty acid beta-oxidation;0.0237221541391612!GO:0004722;protein serine/threonine phosphatase activity;0.0237247032160328!GO:0019798;procollagen-proline dioxygenase activity;0.0237247032160328!GO:0006350;transcription;0.0237247032160328!GO:0006767;water-soluble vitamin metabolic process;0.0241629295590597!GO:0051059;NF-kappaB binding;0.0248496142374268!GO:0016791;phosphoric monoester hydrolase activity;0.0256949166497408!GO:0016272;prefoldin complex;0.0258608108496604!GO:0031124;mRNA 3'-end processing;0.026081942544956!GO:0003746;translation elongation factor activity;0.0262578589437036!GO:0005795;Golgi stack;0.0268535370653969!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0272724516343473!GO:0022403;cell cycle phase;0.0272724516343473!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0272724516343473!GO:0000428;DNA-directed RNA polymerase complex;0.0272724516343473!GO:0040029;regulation of gene expression, epigenetic;0.0272724516343473!GO:0005520;insulin-like growth factor binding;0.0276306990483515!GO:0031272;regulation of pseudopodium formation;0.0276767346635732!GO:0031269;pseudopodium formation;0.0276767346635732!GO:0031344;regulation of cell projection organization and biogenesis;0.0276767346635732!GO:0031268;pseudopodium organization and biogenesis;0.0276767346635732!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0276767346635732!GO:0031274;positive regulation of pseudopodium formation;0.0276767346635732!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0277055070479786!GO:0005862;muscle thin filament tropomyosin;0.0280842227963036!GO:0005832;chaperonin-containing T-complex;0.0281880504354116!GO:0015631;tubulin binding;0.0283881080531385!GO:0008147;structural constituent of bone;0.0292000677374007!GO:0004860;protein kinase inhibitor activity;0.0292095672951345!GO:0006839;mitochondrial transport;0.0296722526301087!GO:0031903;microbody membrane;0.0306696854292516!GO:0005778;peroxisomal membrane;0.0306696854292516!GO:0006629;lipid metabolic process;0.0307644759293744!GO:0009225;nucleotide-sugar metabolic process;0.0308779434319581!GO:0008632;apoptotic program;0.0309678495019246!GO:0016363;nuclear matrix;0.0317188897638628!GO:0003684;damaged DNA binding;0.0317188897638628!GO:0031301;integral to organelle membrane;0.0321208989829138!GO:0008047;enzyme activator activity;0.0321208989829138!GO:0043414;biopolymer methylation;0.0326711192152997!GO:0005996;monosaccharide metabolic process;0.0329258830264866!GO:0050681;androgen receptor binding;0.0333959869760604!GO:0050811;GABA receptor binding;0.0334406783368892!GO:0005586;collagen type III;0.0338634212153056!GO:0006672;ceramide metabolic process;0.0338931855827889!GO:0033559;unsaturated fatty acid metabolic process;0.0347810362532864!GO:0006636;unsaturated fatty acid biosynthetic process;0.0347810362532864!GO:0019318;hexose metabolic process;0.0356371359287446!GO:0045926;negative regulation of growth;0.0366646367409094!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0368146047078389!GO:0010257;NADH dehydrogenase complex assembly;0.0368146047078389!GO:0033108;mitochondrial respiratory chain complex assembly;0.0368146047078389!GO:0007021;tubulin folding;0.0373243256978665!GO:0015036;disulfide oxidoreductase activity;0.0373243256978665!GO:0010468;regulation of gene expression;0.0374396172888144!GO:0000118;histone deacetylase complex;0.0377128515797352!GO:0006289;nucleotide-excision repair;0.037835915740715!GO:0000902;cell morphogenesis;0.0385150562680499!GO:0032989;cellular structure morphogenesis;0.0385150562680499!GO:0018193;peptidyl-amino acid modification;0.0388694635020636!GO:0005583;fibrillar collagen;0.0390982979108862!GO:0030032;lamellipodium biogenesis;0.0393889600640665!GO:0006354;RNA elongation;0.0394377959071278!GO:0008629;induction of apoptosis by intracellular signals;0.0394377959071278!GO:0003756;protein disulfide isomerase activity;0.0394377959071278!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0394377959071278!GO:0030911;TPR domain binding;0.0395056359458908!GO:0004004;ATP-dependent RNA helicase activity;0.0396164471044585!GO:0005720;nuclear heterochromatin;0.0397833659308263!GO:0043433;negative regulation of transcription factor activity;0.0397833659308263!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0401301483168846!GO:0004721;phosphoprotein phosphatase activity;0.0401301483168846!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0413860290645393!GO:0000792;heterochromatin;0.0416544679067135!GO:0005811;lipid particle;0.0420115296783662!GO:0031418;L-ascorbic acid binding;0.0422116991723841!GO:0016407;acetyltransferase activity;0.0429293667446611!GO:0046519;sphingoid metabolic process;0.0432259802450989!GO:0006401;RNA catabolic process;0.043236485244703!GO:0000082;G1/S transition of mitotic cell cycle;0.0432656188460916!GO:0045334;clathrin-coated endocytic vesicle;0.043611046190689!GO:0001953;negative regulation of cell-matrix adhesion;0.0440506050892871!GO:0022408;negative regulation of cell-cell adhesion;0.0442347774613093!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0444467810541361!GO:0016311;dephosphorylation;0.0448408830988017!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0448408830988017!GO:0046813;virion attachment, binding of host cell surface receptor;0.0448408830988017!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0448408830988017!GO:0006749;glutathione metabolic process;0.0454867069295533!GO:0051168;nuclear export;0.0460776003059513!GO:0005801;cis-Golgi network;0.0463583489920843!GO:0000049;tRNA binding;0.0464193536538969!GO:0005777;peroxisome;0.0466165278781925!GO:0042579;microbody;0.0466165278781925!GO:0051235;maintenance of localization;0.0473643914737442!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0475969769451211!GO:0031406;carboxylic acid binding;0.048109586157414!GO:0009303;rRNA transcription;0.0482632521714714!GO:0030128;clathrin coat of endocytic vesicle;0.0486619347026185!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0486619347026185!GO:0030122;AP-2 adaptor complex;0.0486619347026185!GO:0007034;vacuolar transport;0.0486619347026185!GO:0006376;mRNA splice site selection;0.0486619347026185!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0486619347026185!GO:0000209;protein polyubiquitination;0.0492011665976597!GO:0030508;thiol-disulfide exchange intermediate activity;0.0495983224023805!GO:0004300;enoyl-CoA hydratase activity;0.049986705468383!GO:0006807;nitrogen compound metabolic process;0.0499888970641814 | |||
|sample_id=11463 | |sample_id=11463 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=RXR{A,B,G}:2.18053769927;GZF1:2.1550840132;ATF6:1.76853199565;FOXL1:1.56384277454;EBF1:1.47364979636;ESR1:1.44170126649;GLI1..3:1.44148964122;TFAP4:1.30878589123;ZNF423:1.2963527551;ZBTB6:1.21180387609;HES1:1.18953306288;ZNF238:1.10821506388;GFI1B:1.03380774876;PATZ1:0.947943139377;UFEwm:0.91553147944;DBP:0.878480308433;SPZ1:0.875375415544;PAX1,9:0.875085522278;NFATC1..3:0.873427696184;HOX{A5,B5}:0.864412808678;NR3C1:0.857206440759;TFCP2:0.830915060999;NANOG{mouse}:0.814646864156;GTF2A1,2:0.807333082389;TEAD1:0.80604552757;RXRA_VDR{dimer}:0.785631456092;TAL1_TCF{3,4,12}:0.774093428188;AIRE:0.76588460805;ALX4:0.764187912355;NR6A1:0.739550403625;TLX1..3_NFIC{dimer}:0.725180689119;HMX1:0.668250572996;PAX5:0.657456030489;KLF4:0.652923217188;ZIC1..3:0.6492469625;TBX4,5:0.642421803425;MAZ:0.636692128129;MYBL2:0.630682813649;MZF1:0.614705331872;POU6F1:0.592526373253;GTF2I:0.589802662487;IKZF1:0.575564644786;NFIX:0.56198543577;XBP1:0.489651685204;AR:0.478213213231;ESRRA:0.472822148307;EN1,2:0.468438846965;NR1H4:0.45583855768;TP53:0.448746154439;TFAP2{A,C}:0.438432979737;SRF:0.433314632262;SP1:0.429996535308;MAFB:0.411134809218;RREB1:0.405585595744;NR5A1,2:0.399434241822;NHLH1,2:0.392963030095;ARID5B:0.360028470058;NKX6-1,2:0.358914329276;FOXO1,3,4:0.352660089193;ONECUT1,2:0.349055455701;STAT2,4,6:0.337815524528;MYFfamily:0.337611188847;TFAP2B:0.335934164616;MTF1:0.322545907572;LEF1_TCF7_TCF7L1,2:0.320026058369;YY1:0.31698349392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313297473013;TBP:0.284358099448;MED-1{core}:0.283469319014;EGR1..3:0.279275020981;HIF1A:0.273577778037;SOX17:0.26009337477;DMAP1_NCOR{1,2}_SMARC:0.259500384221;HIC1:0.257187002763;FOX{I1,J2}:0.24811587999;AHR_ARNT_ARNT2:0.246512644862;HAND1,2:0.233273323358;NKX2-3_NKX2-5:0.212135480884;NFE2L2:0.188619747476;NKX2-2,8:0.181769896182;PDX1:0.180675527014;HNF1A:0.171133856818;HOX{A6,A7,B6,B7}:0.153770968516;NFE2:0.121606634834;MTE{core}:0.115915032199;XCPE1{core}:0.113554804323;NKX3-1:0.112606709747;LHX3,4:0.108887841514;PAX4:0.106341496829;SMAD1..7,9:0.103250162572;STAT1,3:0.0974105404239;BACH2:0.0879789529101;MEF2{A,B,C,D}:0.0701856470851;REST:0.070063483833;PRDM1:0.0517768509866;HNF4A_NR2F1,2:0.0341358256851;RBPJ:0.0306439127585;STAT5{A,B}:0.00848259115547;ZNF148:0.00295638251023;SOX5:-0.00442526255019;RFX1:-0.0208187018489;HOX{A4,D4}:-0.0211238702066;FOS_FOS{B,L1}_JUN{B,D}:-0.0228717355099;FOX{F1,F2,J1}:-0.0475602005154;RFX2..5_RFXANK_RFXAP:-0.0557271183677;PAX8:-0.0616692423344;NFIL3:-0.0630199720776;NKX2-1,4:-0.0664630157134;PRRX1,2:-0.068544695943;RUNX1..3:-0.0789267529261;TEF:-0.0830838936198;SREBF1,2:-0.0847701185886;bHLH_family:-0.10825172261;ZFP161:-0.108850262268;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.109602525437;TGIF1:-0.132776467598;FOSL2:-0.149088400658;CRX:-0.16090036822;POU2F1..3:-0.164225698029;FOXQ1:-0.173699935551;HLF:-0.183412523919;PPARG:-0.184333763601;ATF2:-0.191186757752;FOXN1:-0.194762651388;PAX6:-0.198790238616;BPTF:-0.213048342873;HMGA1,2:-0.219564841504;GFI1:-0.231138968248;ZNF384:-0.239309464457;ADNP_IRX_SIX_ZHX:-0.252230997468;EVI1:-0.271770632619;ELK1,4_GABP{A,B1}:-0.276425914159;FOX{D1,D2}:-0.289222627593;FOXD3:-0.306921209932;LMO2:-0.331167565136;SNAI1..3:-0.331292422122;CREB1:-0.342395819414;NFE2L1:-0.352567516159;BREu{core}:-0.353839304686;ZNF143:-0.358511972355;GATA4:-0.373023630321;PBX1:-0.388160437662;ATF4:-0.393184072888;HOXA9_MEIS1:-0.401535558041;NFKB1_REL_RELA:-0.416768440938;IKZF2:-0.417942983111;T:-0.423626520519;JUN:-0.430915375753;FOXP3:-0.431232385021;PAX2:-0.449848768989;CEBPA,B_DDIT3:-0.45109764716;ATF5_CREB3:-0.454555454441;CDX1,2,4:-0.479847979424;NRF1:-0.486215644665;FOXA2:-0.489633490981;SOX2:-0.491289406368;FOXM1:-0.502134469479;RORA:-0.505218822804;MYB:-0.509953211624;TOPORS:-0.511028861322;HSF1,2:-0.513408499486;ETS1,2:-0.522319531411;ALX1:-0.534546970394;GCM1,2:-0.567469252717;PAX3,7:-0.572131054595;ZEB1:-0.585242960002;SPI1:-0.593510849699;EP300:-0.609927078484;ZBTB16:-0.63686288987;NKX3-2:-0.647649333113;GATA6:-0.673133277218;TFDP1:-0.682610265308;POU1F1:-0.689569039421;IRF1,2:-0.698800260694;VSX1,2:-0.70557015536;SPIB:-0.732903191227;IRF7:-0.772643415048;MYOD1:-0.788087831973;POU3F1..4:-0.832038544679;CDC5L:-0.857094459491;CUX2:-0.897122465899;ELF1,2,4:-0.897477438904;FOXP1:-0.902400090181;SOX{8,9,10}:-0.912094275771;NFY{A,B,C}:-0.91364850966;NANOG:-0.944484403127;E2F1..5:-1.00209130402;TLX2:-1.03773278115;POU5F1:-1.09126221836;OCT4_SOX2{dimer}:-1.20025461038;HBP1_HMGB_SSRP1_UBTF:-1.21396268328;PITX1..3:-1.51997139451 | |top_motifs=RXR{A,B,G}:2.18053769927;GZF1:2.1550840132;ATF6:1.76853199565;FOXL1:1.56384277454;EBF1:1.47364979636;ESR1:1.44170126649;GLI1..3:1.44148964122;TFAP4:1.30878589123;ZNF423:1.2963527551;ZBTB6:1.21180387609;HES1:1.18953306288;ZNF238:1.10821506388;GFI1B:1.03380774876;PATZ1:0.947943139377;UFEwm:0.91553147944;DBP:0.878480308433;SPZ1:0.875375415544;PAX1,9:0.875085522278;NFATC1..3:0.873427696184;HOX{A5,B5}:0.864412808678;NR3C1:0.857206440759;TFCP2:0.830915060999;NANOG{mouse}:0.814646864156;GTF2A1,2:0.807333082389;TEAD1:0.80604552757;RXRA_VDR{dimer}:0.785631456092;TAL1_TCF{3,4,12}:0.774093428188;AIRE:0.76588460805;ALX4:0.764187912355;NR6A1:0.739550403625;TLX1..3_NFIC{dimer}:0.725180689119;HMX1:0.668250572996;PAX5:0.657456030489;KLF4:0.652923217188;ZIC1..3:0.6492469625;TBX4,5:0.642421803425;MAZ:0.636692128129;MYBL2:0.630682813649;MZF1:0.614705331872;POU6F1:0.592526373253;GTF2I:0.589802662487;IKZF1:0.575564644786;NFIX:0.56198543577;XBP1:0.489651685204;AR:0.478213213231;ESRRA:0.472822148307;EN1,2:0.468438846965;NR1H4:0.45583855768;TP53:0.448746154439;TFAP2{A,C}:0.438432979737;SRF:0.433314632262;SP1:0.429996535308;MAFB:0.411134809218;RREB1:0.405585595744;NR5A1,2:0.399434241822;NHLH1,2:0.392963030095;ARID5B:0.360028470058;NKX6-1,2:0.358914329276;FOXO1,3,4:0.352660089193;ONECUT1,2:0.349055455701;STAT2,4,6:0.337815524528;MYFfamily:0.337611188847;TFAP2B:0.335934164616;MTF1:0.322545907572;LEF1_TCF7_TCF7L1,2:0.320026058369;YY1:0.31698349392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313297473013;TBP:0.284358099448;MED-1{core}:0.283469319014;EGR1..3:0.279275020981;HIF1A:0.273577778037;SOX17:0.26009337477;DMAP1_NCOR{1,2}_SMARC:0.259500384221;HIC1:0.257187002763;FOX{I1,J2}:0.24811587999;AHR_ARNT_ARNT2:0.246512644862;HAND1,2:0.233273323358;NKX2-3_NKX2-5:0.212135480884;NFE2L2:0.188619747476;NKX2-2,8:0.181769896182;PDX1:0.180675527014;HNF1A:0.171133856818;HOX{A6,A7,B6,B7}:0.153770968516;NFE2:0.121606634834;MTE{core}:0.115915032199;XCPE1{core}:0.113554804323;NKX3-1:0.112606709747;LHX3,4:0.108887841514;PAX4:0.106341496829;SMAD1..7,9:0.103250162572;STAT1,3:0.0974105404239;BACH2:0.0879789529101;MEF2{A,B,C,D}:0.0701856470851;REST:0.070063483833;PRDM1:0.0517768509866;HNF4A_NR2F1,2:0.0341358256851;RBPJ:0.0306439127585;STAT5{A,B}:0.00848259115547;ZNF148:0.00295638251023;SOX5:-0.00442526255019;RFX1:-0.0208187018489;HOX{A4,D4}:-0.0211238702066;FOS_FOS{B,L1}_JUN{B,D}:-0.0228717355099;FOX{F1,F2,J1}:-0.0475602005154;RFX2..5_RFXANK_RFXAP:-0.0557271183677;PAX8:-0.0616692423344;NFIL3:-0.0630199720776;NKX2-1,4:-0.0664630157134;PRRX1,2:-0.068544695943;RUNX1..3:-0.0789267529261;TEF:-0.0830838936198;SREBF1,2:-0.0847701185886;bHLH_family:-0.10825172261;ZFP161:-0.108850262268;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.109602525437;TGIF1:-0.132776467598;FOSL2:-0.149088400658;CRX:-0.16090036822;POU2F1..3:-0.164225698029;FOXQ1:-0.173699935551;HLF:-0.183412523919;PPARG:-0.184333763601;ATF2:-0.191186757752;FOXN1:-0.194762651388;PAX6:-0.198790238616;BPTF:-0.213048342873;HMGA1,2:-0.219564841504;GFI1:-0.231138968248;ZNF384:-0.239309464457;ADNP_IRX_SIX_ZHX:-0.252230997468;EVI1:-0.271770632619;ELK1,4_GABP{A,B1}:-0.276425914159;FOX{D1,D2}:-0.289222627593;FOXD3:-0.306921209932;LMO2:-0.331167565136;SNAI1..3:-0.331292422122;CREB1:-0.342395819414;NFE2L1:-0.352567516159;BREu{core}:-0.353839304686;ZNF143:-0.358511972355;GATA4:-0.373023630321;PBX1:-0.388160437662;ATF4:-0.393184072888;HOXA9_MEIS1:-0.401535558041;NFKB1_REL_RELA:-0.416768440938;IKZF2:-0.417942983111;T:-0.423626520519;JUN:-0.430915375753;FOXP3:-0.431232385021;PAX2:-0.449848768989;CEBPA,B_DDIT3:-0.45109764716;ATF5_CREB3:-0.454555454441;CDX1,2,4:-0.479847979424;NRF1:-0.486215644665;FOXA2:-0.489633490981;SOX2:-0.491289406368;FOXM1:-0.502134469479;RORA:-0.505218822804;MYB:-0.509953211624;TOPORS:-0.511028861322;HSF1,2:-0.513408499486;ETS1,2:-0.522319531411;ALX1:-0.534546970394;GCM1,2:-0.567469252717;PAX3,7:-0.572131054595;ZEB1:-0.585242960002;SPI1:-0.593510849699;EP300:-0.609927078484;ZBTB16:-0.63686288987;NKX3-2:-0.647649333113;GATA6:-0.673133277218;TFDP1:-0.682610265308;POU1F1:-0.689569039421;IRF1,2:-0.698800260694;VSX1,2:-0.70557015536;SPIB:-0.732903191227;IRF7:-0.772643415048;MYOD1:-0.788087831973;POU3F1..4:-0.832038544679;CDC5L:-0.857094459491;CUX2:-0.897122465899;ELF1,2,4:-0.897477438904;FOXP1:-0.902400090181;SOX{8,9,10}:-0.912094275771;NFY{A,B,C}:-0.91364850966;NANOG:-0.944484403127;E2F1..5:-1.00209130402;TLX2:-1.03773278115;POU5F1:-1.09126221836;OCT4_SOX2{dimer}:-1.20025461038;HBP1_HMGB_SSRP1_UBTF:-1.21396268328;PITX1..3:-1.51997139451 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11463-119B5;search_select_hide=table117:FF:11463-119B5 | |||
}} | }} | ||
Latest revision as of 18:03, 4 June 2020
| Name: | Anulus Pulposus Cell, donor2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12064 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12064
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12064
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.457 |
| 10 | 10 | 0.515 |
| 100 | 100 | 0.424 |
| 101 | 101 | 0.3 |
| 102 | 102 | 0.299 |
| 103 | 103 | 0.333 |
| 104 | 104 | 0.695 |
| 105 | 105 | 0.826 |
| 106 | 106 | 0.378 |
| 107 | 107 | 0.0355 |
| 108 | 108 | 0.436 |
| 109 | 109 | 0.996 |
| 11 | 11 | 0.681 |
| 110 | 110 | 0.53 |
| 111 | 111 | 0.279 |
| 112 | 112 | 0.729 |
| 113 | 113 | 0.94 |
| 114 | 114 | 0.978 |
| 115 | 115 | 0.399 |
| 116 | 116 | 0.107 |
| 117 | 117 | 0.736 |
| 118 | 118 | 0.991 |
| 119 | 119 | 0.898 |
| 12 | 12 | 0.533 |
| 120 | 120 | 0.255 |
| 121 | 121 | 0.243 |
| 122 | 122 | 0.185 |
| 123 | 123 | 3.18657e-5 |
| 124 | 124 | 0.323 |
| 125 | 125 | 0.0181 |
| 126 | 126 | 0.697 |
| 127 | 127 | 0.322 |
| 128 | 128 | 0.0482 |
| 129 | 129 | 0.769 |
| 13 | 13 | 0.108 |
| 130 | 130 | 0.526 |
| 131 | 131 | 0.208 |
| 132 | 132 | 0.131 |
| 133 | 133 | 0.811 |
| 134 | 134 | 0.476 |
| 135 | 135 | 0.764 |
| 136 | 136 | 0.291 |
| 137 | 137 | 0.107 |
| 138 | 138 | 0.428 |
| 139 | 139 | 0.864 |
| 14 | 14 | 0.986 |
| 140 | 140 | 0.665 |
| 141 | 141 | 0.0947 |
| 142 | 142 | 0.457 |
| 143 | 143 | 0.769 |
| 144 | 144 | 0.434 |
| 145 | 145 | 0.82 |
| 146 | 146 | 0.808 |
| 147 | 147 | 0.221 |
| 148 | 148 | 0.914 |
| 149 | 149 | 0.0671 |
| 15 | 15 | 0.391 |
| 150 | 150 | 0.846 |
| 151 | 151 | 0.734 |
| 152 | 152 | 0.0853 |
| 153 | 153 | 0.773 |
| 154 | 154 | 0.206 |
| 155 | 155 | 0.0846 |
| 156 | 156 | 0.268 |
| 157 | 157 | 0.681 |
| 158 | 158 | 0.0599 |
| 159 | 159 | 0.478 |
| 16 | 16 | 0.0641 |
| 160 | 160 | 0.54 |
| 161 | 161 | 0.638 |
| 162 | 162 | 0.352 |
| 163 | 163 | 0.964 |
| 164 | 164 | 0.481 |
| 165 | 165 | 0.894 |
| 166 | 166 | 0.251 |
| 167 | 167 | 0.107 |
| 168 | 168 | 0.795 |
| 169 | 169 | 0.141 |
| 17 | 17 | 0.391 |
| 18 | 18 | 0.515 |
| 19 | 19 | 0.0366 |
| 2 | 2 | 0.0862 |
| 20 | 20 | 0.382 |
| 21 | 21 | 0.579 |
| 22 | 22 | 0.0687 |
| 23 | 23 | 0.201 |
| 24 | 24 | 0.488 |
| 25 | 25 | 0.447 |
| 26 | 26 | 0.786 |
| 27 | 27 | 0.103 |
| 28 | 28 | 0.133 |
| 29 | 29 | 0.451 |
| 3 | 3 | 0.793 |
| 30 | 30 | 0.0704 |
| 31 | 31 | 0.28 |
| 32 | 32 | 3.16343e-10 |
| 33 | 33 | 0.805 |
| 34 | 34 | 0.468 |
| 35 | 35 | 0.739 |
| 36 | 36 | 0.0251 |
| 37 | 37 | 0.162 |
| 38 | 38 | 0.674 |
| 39 | 39 | 0.475 |
| 4 | 4 | 0.132 |
| 40 | 40 | 0.0762 |
| 41 | 41 | 0.102 |
| 42 | 42 | 0.526 |
| 43 | 43 | 0.992 |
| 44 | 44 | 0.401 |
| 45 | 45 | 0.138 |
| 46 | 46 | 0.477 |
| 47 | 47 | 0.335 |
| 48 | 48 | 0.701 |
| 49 | 49 | 0.506 |
| 5 | 5 | 0.846 |
| 50 | 50 | 0.521 |
| 51 | 51 | 0.636 |
| 52 | 52 | 0.402 |
| 53 | 53 | 0.0541 |
| 54 | 54 | 0.569 |
| 55 | 55 | 0.438 |
| 56 | 56 | 0.863 |
| 57 | 57 | 0.469 |
| 58 | 58 | 0.326 |
| 59 | 59 | 0.029 |
| 6 | 6 | 0.303 |
| 60 | 60 | 0.592 |
| 61 | 61 | 0.298 |
| 62 | 62 | 0.715 |
| 63 | 63 | 0.868 |
| 64 | 64 | 0.812 |
| 65 | 65 | 0.312 |
| 66 | 66 | 0.241 |
| 67 | 67 | 0.72 |
| 68 | 68 | 0.126 |
| 69 | 69 | 0.264 |
| 7 | 7 | 0.512 |
| 70 | 70 | 1 |
| 71 | 71 | 0.477 |
| 72 | 72 | 0.961 |
| 73 | 73 | 0.0841 |
| 74 | 74 | 0.305 |
| 75 | 75 | 0.814 |
| 76 | 76 | 0.55 |
| 77 | 77 | 0.0758 |
| 78 | 78 | 0.231 |
| 79 | 79 | 0.0243 |
| 8 | 8 | 0.516 |
| 80 | 80 | 0.68 |
| 81 | 81 | 0.722 |
| 82 | 82 | 0.341 |
| 83 | 83 | 0.929 |
| 84 | 84 | 0.286 |
| 85 | 85 | 0.24 |
| 86 | 86 | 0.725 |
| 87 | 87 | 0.624 |
| 88 | 88 | 0.469 |
| 89 | 89 | 0.212 |
| 9 | 9 | 0.134 |
| 90 | 90 | 0.00619 |
| 91 | 91 | 0.999 |
| 92 | 92 | 0.263 |
| 93 | 93 | 0.588 |
| 94 | 94 | 0.858 |
| 95 | 95 | 0.843 |
| 96 | 96 | 0.878 |
| 97 | 97 | 0.507 |
| 98 | 98 | 0.647 |
| 99 | 99 | 3.54481e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12064
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002602 (annulus pulposus cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0002418 (cartilage tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0004755 (skeletal tissue)
0006444 (annulus fibrosus)
0001995 (fibrocartilage)
0007844 (cartilage element)
0004715 (annulus fibrosus disci intervertebralis)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000192 (human anulus pulposus cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
