FF:11510-119G7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004797 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004797 | ||
|accession_numbers=CAGE;DRX008104;DRR008976;DRZ000401;DRZ001786;DRZ011751;DRZ013136 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037247;DRR041613;DRZ007255 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000012 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!273.26!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!1.67!94.36!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!1.57!44.48!FOXF1;;chr1:201979703..201979721,+!p2@ELF3!1.45!27.03!ELF3;;chr17:46675558..46675577,-!p2@HOXB6!1.41!24.57!HOXB6;;chr18:19749386..19749404,+!p2@GATA6!1.40!34.16!GATA6;;chr6:134210243..134210257,+!p1@TCF21!1.38!23.10!TCF21;;chr1:201979743..201979762,+!p1@ELF3!1.38!23.10!ELF3;;chr7:27170359..27170381,-!p1@HOXA4!1.29!18.68!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.25!52.59!GATA6;;chr17:46671108..46671147,-!p1@HOXB5!1.22!15.73!HOXB5;;chr5:92918919..92918942,+!p1@NR2F1!1.19!64.87!NR2F1;;chr6:1389789..1389821,+!p1@FOXF2!1.19!19.90!FOXF2;;chr1:209979467..209979494,-!p1@IRF6!1.19!16.46!IRF6;;chr17:46622205..46622218,-!p3@HOXB2!1.15!15.24!HOXB2;;chr7:27183263..27183284,-!p2@HOXA5!1.15!13.27!HOXA5;;chr12:66218255..66218304,+!p3@HMGA2!1.10!31.45!HMGA2;;chr14:38064429..38064486,-!p1@FOXA1!1.10!11.55!FOXA1;;chr8:102504651..102504683,+!p1@GRHL2!1.08!11.06!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!1.05!307.41!HMGA1;;chr20:6748325..6748352,+!p1@BMP2!1.04!14.50!BMP2;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.11!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.03!9.83!IRX2;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.83!MAFK;;chr7:27183291..27183324,-!p1@HOXA5!1.01!9.34!HOXA5;;chr17:46675539..46675551,-!p7@HOXB6!1.01!9.34!HOXB6;;chr19:46801639..46801699,+!p1@HIF3A!1.00!9.09!HIF3A;;chr6:34204672..34204692,+!p1@HMGA1!0.99!1002.59!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.99!27.77!TBX2;;chr17:46675586..46675600,-!p6@HOXB6!0.99!8.85!HOXB6;;chr7:27153454..27153469,-!p2@HOXA3!0.99!8.85!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.98!8.60!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!0.98!8.60!ZFP42;;chr8:72756667..72756736,-!p2@MSC!0.94!12.29!MSC;;chr8:72756637..72756664,-!p3@MSC!0.94!8.85!MSC;;chr17:46675420..46675465,-!p3@HOXB6!0.92!8.60!HOXB6;;chr3:111314186..111314204,-!p1@ZBED2!0.92!7.37!ZBED2;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.17!TBX3;;chr15:83953397..83953425,-!p1@BNC1!0.91!8.35!BNC1;;chr7:27183325..27183338,-!p5@HOXA5!0.91!7.13!HOXA5;;chr2:121493425..121493474,+!p1@GLI2!0.90!15.97!GLI2;;chr1:6479968..6479986,-!p1@HES2!0.90!6.88!HES2;;chr20:42543441..42543497,+!p1@TOX2!0.89!31.95!TOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.24!HOXB2;;chr1:209979411..209979433,-!p2@IRF6!0.88!6.63!IRF6;;chr17:46622114..46622138,-!p4@HOXB2!0.87!10.08!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.85!9.09!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!0.84!9.09!HOXB4;;chr20:22564895..22564910,-!p1@FOXA2!0.84!5.90!FOXA2;;chr5:92918894..92918912,+!p2@NR2F1!0.82!19.41!NR2F1;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.86!CENPT;;chr18:19749353..19749367,+!p4@GATA6!0.82!5.65!GATA6;;chr17:41623692..41623715,-!p1@ETV4!0.81!24.82!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.81!8.60!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.33!DRAP1;;chr17:46667594..46667619,-!p1@HOXB3!0.79!5.16!HOXB3;;chr7:27170274..27170308,-!p3@HOXA4!0.79!5.16!HOXA4;;chr7:27183191..27183214,-!p4@HOXA5!0.79!5.16!HOXA5;;chr12:115122005..115122016,-!p3@TBX3!0.78!6.14!TBX3;;chr17:70117153..70117174,+!p1@SOX9!0.77!55.04!SOX9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.77!47.92!PPP1R13L;;chr11:65667884..65667895,-!p2@FOSL1!0.77!20.64!FOSL1;;chr6:126240380..126240430,+!p2@NCOA7!0.77!13.52!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.83!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.76!8.85!GATA6;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.86!FOXQ1;;chr3:170076314..170076334,+!p2@SKIL!0.74!6.14!SKIL;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.91!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!0.73!79.86!MYBL2;;chr9:35732647..35732678,+!p2@CREB3!0.73!26.78!CREB3;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.11!DRAP1;;chr17:46675619..46675642,-!p5@HOXB6!0.73!4.42!HOXB6;;chr19:17356189..17356221,-!p2@NR2F6!0.72!7.37!NR2F6;;chr12:54447599..54447630,+!p3@HOXC4!0.72!5.41!HOXC4;;chr1:8938709..8938720,-!p3@ENO1!0.71!224.60!ENO1;;chr11:65667846..65667868,-!p1@FOSL1!0.71!122.87!FOSL1;;chr17:1958388..1958404,+!p1@HIC1!0.71!29.49!HIC1;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.78!EPAS1;;chr17:46667628..46667642,-!p2@HOXB3!0.71!4.18!HOXB3;;chr17:46675469..46675481,-!p4@HOXB6!0.71!4.18!HOXB6;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr7:27153428..27153440,-!p3@HOXA3!0.71!4.18!HOXA3;;chr1:23885981..23886002,-!p1@ID3!0.70!801.09!ID3;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.78!MYBL2;;chr10:94449703..94449718,+!p1@HHEX!0.70!17.20!HHEX;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.59!MLLT11;;chr2:122042770..122042785,-!p1@TFCP2L1!0.69!3.93!TFCP2L1;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.93!HOXC4;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.93!HOXA4;;chr7:27183114..27183138,-!p3@HOXA5!0.69!3.93!HOXA5;;chr15:67357924..67357952,+!p2@SMAD3!0.68!28.75!SMAD3;;chr8:102504690..102504704,+!p3@GRHL2!0.67!3.69!GRHL2;;chr20:42543506..42543549,+!p2@TOX2!0.66!9.58!TOX2;;chr9:35732514..35732530,+!p5@CREB3!0.66!5.41!CREB3;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| |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!273.26!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!1.67!94.36!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!1.57!44.48!FOXF1;;chr1:201979703..201979721,+!p2@ELF3!1.45!27.03!ELF3;;chr17:46675558..46675577,-!p2@HOXB6!1.41!24.57!HOXB6;;chr18:19749386..19749404,+!p2@GATA6!1.40!34.16!GATA6;;chr6:134210243..134210257,+!p1@TCF21!1.38!23.10!TCF21;;chr1:201979743..201979762,+!p1@ELF3!1.38!23.10!ELF3;;chr7:27170359..27170381,-!p1@HOXA4!1.29!18.68!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.25!52.59!GATA6;;chr17:46671108..46671147,-!p1@HOXB5!1.22!15.73!HOXB5;;chr5:92918919..92918942,+!p1@NR2F1!1.19!64.87!NR2F1;;chr6:1389789..1389821,+!p1@FOXF2!1.19!19.90!FOXF2;;chr1:209979467..209979494,-!p1@IRF6!1.19!16.46!IRF6;;chr17:46622205..46622218,-!p3@HOXB2!1.15!15.24!HOXB2;;chr7:27183263..27183284,-!p2@HOXA5!1.15!13.27!HOXA5;;chr12:66218255..66218304,+!p3@HMGA2!1.10!31.45!HMGA2;;chr14:38064429..38064486,-!p1@FOXA1!1.10!11.55!FOXA1;;chr8:102504651..102504683,+!p1@GRHL2!1.08!11.06!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!1.05!307.41!HMGA1;;chr20:6748325..6748352,+!p1@BMP2!1.04!14.50!BMP2;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.11!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.03!9.83!IRX2;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.83!MAFK;;chr7:27183291..27183324,-!p1@HOXA5!1.01!9.34!HOXA5;;chr17:46675539..46675551,-!p7@HOXB6!1.01!9.34!HOXB6;;chr19:46801639..46801699,+!p1@HIF3A!1.00!9.09!HIF3A;;chr6:34204672..34204692,+!p1@HMGA1!0.99!1002.59!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.99!27.77!TBX2;;chr17:46675586..46675600,-!p6@HOXB6!0.99!8.85!HOXB6;;chr7:27153454..27153469,-!p2@HOXA3!0.99!8.85!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.98!8.60!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!0.98!8.60!ZFP42;;chr8:72756667..72756736,-!p2@MSC!0.94!12.29!MSC;;chr8:72756637..72756664,-!p3@MSC!0.94!8.85!MSC;;chr17:46675420..46675465,-!p3@HOXB6!0.92!8.60!HOXB6;;chr3:111314186..111314204,-!p1@ZBED2!0.92!7.37!ZBED2;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.17!TBX3;;chr15:83953397..83953425,-!p1@BNC1!0.91!8.35!BNC1;;chr7:27183325..27183338,-!p5@HOXA5!0.91!7.13!HOXA5;;chr2:121493425..121493474,+!p1@GLI2!0.90!15.97!GLI2;;chr1:6479968..6479986,-!p1@HES2!0.90!6.88!HES2;;chr20:42543441..42543497,+!p1@TOX2!0.89!31.95!TOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.24!HOXB2;;chr1:209979411..209979433,-!p2@IRF6!0.88!6.63!IRF6;;chr17:46622114..46622138,-!p4@HOXB2!0.87!10.08!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.85!9.09!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!0.84!9.09!HOXB4;;chr20:22564895..22564910,-!p1@FOXA2!0.84!5.90!FOXA2;;chr5:92918894..92918912,+!p2@NR2F1!0.82!19.41!NR2F1;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.86!CENPT;;chr18:19749353..19749367,+!p4@GATA6!0.82!5.65!GATA6;;chr17:41623692..41623715,-!p1@ETV4!0.81!24.82!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.81!8.60!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.33!DRAP1;;chr17:46667594..46667619,-!p1@HOXB3!0.79!5.16!HOXB3;;chr7:27170274..27170308,-!p3@HOXA4!0.79!5.16!HOXA4;;chr7:27183191..27183214,-!p4@HOXA5!0.79!5.16!HOXA5;;chr12:115122005..115122016,-!p3@TBX3!0.78!6.14!TBX3;;chr17:70117153..70117174,+!p1@SOX9!0.77!55.04!SOX9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.77!47.92!PPP1R13L;;chr11:65667884..65667895,-!p2@FOSL1!0.77!20.64!FOSL1;;chr6:126240380..126240430,+!p2@NCOA7!0.77!13.52!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.83!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.76!8.85!GATA6;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.86!FOXQ1;;chr3:170076314..170076334,+!p2@SKIL!0.74!6.14!SKIL;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.91!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!0.73!79.86!MYBL2;;chr9:35732647..35732678,+!p2@CREB3!0.73!26.78!CREB3;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.11!DRAP1;;chr17:46675619..46675642,-!p5@HOXB6!0.73!4.42!HOXB6;;chr19:17356189..17356221,-!p2@NR2F6!0.72!7.37!NR2F6;;chr12:54447599..54447630,+!p3@HOXC4!0.72!5.41!HOXC4;;chr1:8938709..8938720,-!p3@ENO1!0.71!224.60!ENO1;;chr11:65667846..65667868,-!p1@FOSL1!0.71!122.87!FOSL1;;chr17:1958388..1958404,+!p1@HIC1!0.71!29.49!HIC1;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.78!EPAS1;;chr17:46667628..46667642,-!p2@HOXB3!0.71!4.18!HOXB3;;chr17:46675469..46675481,-!p4@HOXB6!0.71!4.18!HOXB6;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr7:27153428..27153440,-!p3@HOXA3!0.71!4.18!HOXA3;;chr1:23885981..23886002,-!p1@ID3!0.70!801.09!ID3;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.78!MYBL2;;chr10:94449703..94449718,+!p1@HHEX!0.70!17.20!HHEX;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.59!MLLT11;;chr2:122042770..122042785,-!p1@TFCP2L1!0.69!3.93!TFCP2L1;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.93!HOXC4;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.93!HOXA4;;chr7:27183114..27183138,-!p3@HOXA5!0.69!3.93!HOXA5;;chr15:67357924..67357952,+!p2@SMAD3!0.68!28.75!SMAD3;;chr8:102504690..102504704,+!p3@GRHL2!0.67!3.69!GRHL2;;chr20:42543506..42543549,+!p2@TOX2!0.66!9.58!TOX2;;chr9:35732514..35732530,+!p5@CREB3!0.66!5.41!CREB3;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11510-119G7 | |id=FF:11510-119G7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000012 | ||
|is_obsolete= | |||
|library_id=CNhs11325 | |||
|library_id_phase_based=2:CNhs11325 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11510 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.CGATGT.11510 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11510 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.CGATGT.11510 | |||
|name=Alveolar Epithelial Cells, donor1 | |name=Alveolar Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11325,LSID768,release014,COMPLETED | |profile_hcage=CNhs11325,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3205 | |rna_catalog_number=SC3205 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119G7 | |rna_tube_id=119G7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10015.CGATGT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.32111215435342e-225!GO:0005737;cytoplasm;1.02489900237612e-202!GO:0043226;organelle;4.63107113630197e-177!GO:0043229;intracellular organelle;7.66713793242961e-177!GO:0043231;intracellular membrane-bound organelle;1.1079688165333e-169!GO:0043227;membrane-bound organelle;2.66964704602035e-169!GO:0044422;organelle part;4.38946735435843e-142!GO:0044444;cytoplasmic part;3.57429192556479e-141!GO:0044446;intracellular organelle part;6.02764095176797e-141!GO:0032991;macromolecular complex;5.08197385744171e-90!GO:0030529;ribonucleoprotein complex;6.10499146430422e-85!GO:0005515;protein binding;3.57035028943917e-80!GO:0005739;mitochondrion;5.59630462271e-75!GO:0044237;cellular metabolic process;8.62808741073196e-74!GO:0044238;primary metabolic process;2.1808374709381e-73!GO:0043233;organelle lumen;4.50882658385489e-68!GO:0031974;membrane-enclosed lumen;4.50882658385489e-68!GO:0043170;macromolecule metabolic process;1.92619518825996e-63!GO:0044428;nuclear part;2.37767653765267e-57!GO:0005840;ribosome;6.08075738528208e-57!GO:0003723;RNA binding;4.4741596408422e-56!GO:0031090;organelle membrane;1.64103818190484e-54!GO:0005634;nucleus;2.55880882746787e-54!GO:0044429;mitochondrial part;2.60732488325752e-52!GO:0003735;structural constituent of ribosome;4.71436447243402e-51!GO:0006412;translation;3.04916999665359e-49!GO:0019538;protein metabolic process;3.57126525333301e-47!GO:0009058;biosynthetic process;5.24952502430177e-47!GO:0016043;cellular component organization and biogenesis;2.3572842425412e-46!GO:0044249;cellular biosynthetic process;5.4591414531008e-44!GO:0043234;protein complex;1.66497343171272e-43!GO:0031967;organelle envelope;8.45002013894502e-43!GO:0033279;ribosomal subunit;1.06064942765739e-42!GO:0031975;envelope;1.67888781316592e-42!GO:0044267;cellular protein metabolic process;3.89154364484188e-41!GO:0044260;cellular macromolecule metabolic process;4.25327617634234e-41!GO:0009059;macromolecule biosynthetic process;2.84595621885677e-40!GO:0006396;RNA processing;6.70129398857815e-40!GO:0015031;protein transport;6.25294676221152e-38!GO:0033036;macromolecule localization;4.25602686814814e-37!GO:0043228;non-membrane-bound organelle;3.0401251148284e-36!GO:0043232;intracellular non-membrane-bound organelle;3.0401251148284e-36!GO:0005829;cytosol;6.31926294892453e-36!GO:0031981;nuclear lumen;1.47305197430806e-35!GO:0045184;establishment of protein localization;6.06286838155903e-35!GO:0008104;protein localization;9.01671939569327e-35!GO:0005740;mitochondrial envelope;9.694962972001e-35!GO:0031966;mitochondrial membrane;3.11890878036391e-32!GO:0006996;organelle organization and biogenesis;1.45061583867988e-31!GO:0043283;biopolymer metabolic process;1.48969920795419e-31!GO:0019866;organelle inner membrane;1.17169756317994e-30!GO:0046907;intracellular transport;2.9262121417604e-30!GO:0065003;macromolecular complex assembly;1.15106622627975e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.69239361796285e-29!GO:0005743;mitochondrial inner membrane;3.06257784258111e-29!GO:0016071;mRNA metabolic process;9.3296821178221e-29!GO:0010467;gene expression;2.9025262808271e-27!GO:0008380;RNA splicing;7.77185875765168e-27!GO:0022607;cellular component assembly;1.83139092730271e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.32063996159299e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.43256546801636e-25!GO:0006397;mRNA processing;4.00484449634036e-25!GO:0006886;intracellular protein transport;1.40620260245383e-24!GO:0044445;cytosolic part;1.56530286137938e-23!GO:0006259;DNA metabolic process;9.75379674876034e-23!GO:0015934;large ribosomal subunit;1.14612457003099e-22!GO:0031980;mitochondrial lumen;3.45093034633253e-22!GO:0005759;mitochondrial matrix;3.45093034633253e-22!GO:0012505;endomembrane system;2.39926903614101e-21!GO:0006119;oxidative phosphorylation;4.43179030381396e-21!GO:0015935;small ribosomal subunit;4.78073714966184e-21!GO:0007049;cell cycle;6.45591060255008e-21!GO:0005681;spliceosome;2.87251049711117e-20!GO:0005783;endoplasmic reticulum;3.80197664643342e-20!GO:0044455;mitochondrial membrane part;2.2301801472096e-19!GO:0006457;protein folding;2.27824517822644e-19!GO:0051649;establishment of cellular localization;2.29643051171115e-19!GO:0005654;nucleoplasm;5.43167552163864e-19!GO:0051641;cellular localization;6.80498635412452e-19!GO:0044432;endoplasmic reticulum part;2.01036587397838e-18!GO:0005730;nucleolus;1.19199479754438e-17!GO:0048770;pigment granule;1.53313078639736e-17!GO:0042470;melanosome;1.53313078639736e-17!GO:0005761;mitochondrial ribosome;3.78692851582382e-17!GO:0000313;organellar ribosome;3.78692851582382e-17!GO:0044451;nucleoplasm part;2.765651799667e-16!GO:0005746;mitochondrial respiratory chain;3.1850067993903e-16!GO:0005794;Golgi apparatus;4.9471936789914e-16!GO:0022402;cell cycle process;9.11534460950448e-16!GO:0016462;pyrophosphatase activity;9.26260893376149e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.04242558153751e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.30853401777178e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.6789539975088e-15!GO:0016874;ligase activity;2.31879837587335e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.59671026064543e-15!GO:0051186;cofactor metabolic process;4.24203283650502e-15!GO:0000166;nucleotide binding;4.4097310456531e-15!GO:0017111;nucleoside-triphosphatase activity;4.67292061807444e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.25481394962113e-15!GO:0003954;NADH dehydrogenase activity;8.25481394962113e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.25481394962113e-15!GO:0008134;transcription factor binding;1.41209888499297e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.85296451354468e-14!GO:0000278;mitotic cell cycle;5.29331291786903e-14!GO:0000502;proteasome complex (sensu Eukaryota);6.91324643641932e-14!GO:0022618;protein-RNA complex assembly;1.97492152502044e-13!GO:0044265;cellular macromolecule catabolic process;2.10184812598546e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.80072606907305e-13!GO:0042773;ATP synthesis coupled electron transport;2.80072606907305e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.24777239287611e-13!GO:0006605;protein targeting;3.66136348724841e-13!GO:0043285;biopolymer catabolic process;3.90764561415716e-13!GO:0051082;unfolded protein binding;4.05037609373169e-13!GO:0012501;programmed cell death;4.05037609373169e-13!GO:0005789;endoplasmic reticulum membrane;4.61229236619477e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.25051153555962e-13!GO:0045271;respiratory chain complex I;6.25051153555962e-13!GO:0005747;mitochondrial respiratory chain complex I;6.25051153555962e-13!GO:0042254;ribosome biogenesis and assembly;6.45781202049834e-13!GO:0006915;apoptosis;7.50350989562625e-13!GO:0009057;macromolecule catabolic process;1.03605030252976e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.16288037863567e-12!GO:0043412;biopolymer modification;1.20010825660106e-12!GO:0006512;ubiquitin cycle;1.44493957866601e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.76498036310992e-12!GO:0016192;vesicle-mediated transport;2.50370363053771e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.08605878483214e-12!GO:0019941;modification-dependent protein catabolic process;5.96373604976083e-12!GO:0043632;modification-dependent macromolecule catabolic process;5.96373604976083e-12!GO:0044257;cellular protein catabolic process;8.72397099314519e-12!GO:0009055;electron carrier activity;9.13327497887243e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.06107627813412e-11!GO:0006732;coenzyme metabolic process;1.10944280806968e-11!GO:0044248;cellular catabolic process;1.20219035492867e-11!GO:0006464;protein modification process;1.33733942631244e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.45859571668903e-11!GO:0000375;RNA splicing, via transesterification reactions;1.45859571668903e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.45859571668903e-11!GO:0030163;protein catabolic process;2.18441129882667e-11!GO:0008219;cell death;2.28968845138644e-11!GO:0016265;death;2.28968845138644e-11!GO:0044427;chromosomal part;3.67535148058018e-11!GO:0006974;response to DNA damage stimulus;3.99807340608444e-11!GO:0008135;translation factor activity, nucleic acid binding;4.08159362639675e-11!GO:0032553;ribonucleotide binding;1.05977419415271e-10!GO:0032555;purine ribonucleotide binding;1.05977419415271e-10!GO:0048193;Golgi vesicle transport;1.11201545888709e-10!GO:0005694;chromosome;1.38763455966521e-10!GO:0009259;ribonucleotide metabolic process;1.79134415484259e-10!GO:0000087;M phase of mitotic cell cycle;1.91633719041122e-10!GO:0007067;mitosis;2.21025164898427e-10!GO:0017076;purine nucleotide binding;2.50233811422529e-10!GO:0048523;negative regulation of cellular process;2.62380389014574e-10!GO:0022403;cell cycle phase;2.64451100157361e-10!GO:0003712;transcription cofactor activity;3.13986824197841e-10!GO:0006163;purine nucleotide metabolic process;4.52035031900462e-10!GO:0000074;regulation of progression through cell cycle;4.65833045327398e-10!GO:0051726;regulation of cell cycle;5.3249141559997e-10!GO:0003676;nucleic acid binding;6.09198362235348e-10!GO:0051276;chromosome organization and biogenesis;9.35566104860141e-10!GO:0005635;nuclear envelope;1.20879653534741e-09!GO:0009150;purine ribonucleotide metabolic process;1.27693326310703e-09!GO:0006399;tRNA metabolic process;1.46034117312373e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.14737025558853e-09!GO:0006260;DNA replication;2.42943243827002e-09!GO:0009260;ribonucleotide biosynthetic process;2.72736483171816e-09!GO:0006164;purine nucleotide biosynthetic process;2.8844595038451e-09!GO:0043067;regulation of programmed cell death;3.6064749626853e-09!GO:0006461;protein complex assembly;3.60942878463666e-09!GO:0042981;regulation of apoptosis;3.8883981929879e-09!GO:0006364;rRNA processing;4.01579956326959e-09!GO:0065004;protein-DNA complex assembly;4.02330883577396e-09!GO:0043687;post-translational protein modification;4.02330883577396e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.35010997315833e-09!GO:0005793;ER-Golgi intermediate compartment;5.26384347826774e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.17267983441998e-09!GO:0006323;DNA packaging;7.3431212422236e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.7568861672964e-09!GO:0006913;nucleocytoplasmic transport;7.96069015649682e-09!GO:0016072;rRNA metabolic process;7.96069015649682e-09!GO:0006281;DNA repair;8.11047665109757e-09!GO:0031965;nuclear membrane;8.31153755498781e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.31153755498781e-09!GO:0000785;chromatin;9.12520138253958e-09!GO:0009141;nucleoside triphosphate metabolic process;1.06663741209786e-08!GO:0048519;negative regulation of biological process;1.11537696056375e-08!GO:0007005;mitochondrion organization and biogenesis;1.15963670097497e-08!GO:0006333;chromatin assembly or disassembly;1.16312473969117e-08!GO:0016740;transferase activity;1.53556440569879e-08!GO:0051169;nuclear transport;1.541767809749e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.55772087833653e-08!GO:0051188;cofactor biosynthetic process;1.59453423415591e-08!GO:0006334;nucleosome assembly;1.73774950869662e-08!GO:0005524;ATP binding;1.78900888767026e-08!GO:0016070;RNA metabolic process;1.92920536622147e-08!GO:0044453;nuclear membrane part;2.27259954289905e-08!GO:0003743;translation initiation factor activity;2.32181029579114e-08!GO:0051301;cell division;2.61317983582608e-08!GO:0009719;response to endogenous stimulus;2.73331398073251e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.79911191193625e-08!GO:0032559;adenyl ribonucleotide binding;3.23837568335454e-08!GO:0006413;translational initiation;3.46851844939561e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.46851844939561e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.46851844939561e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.2566394101758e-08!GO:0031497;chromatin assembly;4.36767627759917e-08!GO:0008639;small protein conjugating enzyme activity;5.02853975833321e-08!GO:0000279;M phase;5.20617165203345e-08!GO:0006446;regulation of translational initiation;5.74790409606638e-08!GO:0065002;intracellular protein transport across a membrane;5.95390644643752e-08!GO:0044431;Golgi apparatus part;7.66895693186433e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.22823063664774e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.22823063664774e-08!GO:0005768;endosome;9.25075201427472e-08!GO:0030554;adenyl nucleotide binding;9.3729555283252e-08!GO:0019787;small conjugating protein ligase activity;9.98932671177052e-08!GO:0004842;ubiquitin-protein ligase activity;9.98932671177052e-08!GO:0009117;nucleotide metabolic process;1.15760930902069e-07!GO:0005788;endoplasmic reticulum lumen;1.39492725326941e-07!GO:0006366;transcription from RNA polymerase II promoter;1.51665360285029e-07!GO:0009060;aerobic respiration;1.82277756106635e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.90011028112499e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.90011028112499e-07!GO:0015986;ATP synthesis coupled proton transport;2.04128934705871e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.04128934705871e-07!GO:0043069;negative regulation of programmed cell death;2.14967766740699e-07!GO:0017038;protein import;2.23692139574898e-07!GO:0003714;transcription corepressor activity;2.4356490666536e-07!GO:0008565;protein transporter activity;2.97335157168686e-07!GO:0009056;catabolic process;3.41056933957416e-07!GO:0016491;oxidoreductase activity;3.66928164061321e-07!GO:0016604;nuclear body;3.72795025281552e-07!GO:0019829;cation-transporting ATPase activity;3.88262000136354e-07!GO:0003924;GTPase activity;4.03688246243317e-07!GO:0016564;transcription repressor activity;4.49068694978517e-07!GO:0042623;ATPase activity, coupled;4.6982578115116e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.83077977712036e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.83077977712036e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.83077977712036e-07!GO:0043066;negative regulation of apoptosis;4.94363400510477e-07!GO:0048475;coated membrane;6.4617173420076e-07!GO:0030117;membrane coat;6.4617173420076e-07!GO:0030120;vesicle coat;7.47076294159959e-07!GO:0030662;coated vesicle membrane;7.47076294159959e-07!GO:0046034;ATP metabolic process;7.59851909056718e-07!GO:0016881;acid-amino acid ligase activity;7.80438357948358e-07!GO:0005643;nuclear pore;8.50403475548268e-07!GO:0043038;amino acid activation;1.20139073642325e-06!GO:0006418;tRNA aminoacylation for protein translation;1.20139073642325e-06!GO:0043039;tRNA aminoacylation;1.20139073642325e-06!GO:0045333;cellular respiration;1.24322232489707e-06!GO:0051246;regulation of protein metabolic process;1.34604578928297e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.38583641422295e-06!GO:0016887;ATPase activity;1.44055786594207e-06!GO:0009108;coenzyme biosynthetic process;1.52556464816046e-06!GO:0006916;anti-apoptosis;1.69570622862358e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.78165535502322e-06!GO:0005762;mitochondrial large ribosomal subunit;2.14626895766194e-06!GO:0000315;organellar large ribosomal subunit;2.14626895766194e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.59016886739847e-06!GO:0031252;leading edge;2.71018800586706e-06!GO:0031988;membrane-bound vesicle;2.95080451701368e-06!GO:0045259;proton-transporting ATP synthase complex;2.97257947160984e-06!GO:0000139;Golgi membrane;3.24889190426617e-06!GO:0006754;ATP biosynthetic process;3.94279148866118e-06!GO:0006753;nucleoside phosphate metabolic process;3.94279148866118e-06!GO:0005667;transcription factor complex;3.98963818856104e-06!GO:0016779;nucleotidyltransferase activity;4.06904885878032e-06!GO:0031324;negative regulation of cellular metabolic process;4.18532524695716e-06!GO:0003899;DNA-directed RNA polymerase activity;5.465033763151e-06!GO:0042802;identical protein binding;5.48490551867201e-06!GO:0006099;tricarboxylic acid cycle;5.49648179996236e-06!GO:0046356;acetyl-CoA catabolic process;5.49648179996236e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.59215210973798e-06!GO:0005773;vacuole;8.09135376137782e-06!GO:0006793;phosphorus metabolic process;9.31224089800178e-06!GO:0006796;phosphate metabolic process;9.31224089800178e-06!GO:0044440;endosomal part;1.02291585883196e-05!GO:0010008;endosome membrane;1.02291585883196e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.10607001213381e-05!GO:0016853;isomerase activity;1.18845514131987e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.21738899551263e-05!GO:0015630;microtubule cytoskeleton;1.25586938201685e-05!GO:0048522;positive regulation of cellular process;1.2892798468371e-05!GO:0009892;negative regulation of metabolic process;1.39472739589472e-05!GO:0006084;acetyl-CoA metabolic process;1.41578699893393e-05!GO:0000314;organellar small ribosomal subunit;1.49837160801106e-05!GO:0005763;mitochondrial small ribosomal subunit;1.49837160801106e-05!GO:0050794;regulation of cellular process;1.5239066678287e-05!GO:0032446;protein modification by small protein conjugation;1.60661353863127e-05!GO:0046930;pore complex;1.63412082567861e-05!GO:0031410;cytoplasmic vesicle;1.71758103156305e-05!GO:0016567;protein ubiquitination;1.78225309183912e-05!GO:0045454;cell redox homeostasis;1.79809341934008e-05!GO:0031982;vesicle;1.89093975996577e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.9477620078564e-05!GO:0006752;group transfer coenzyme metabolic process;1.97029364579692e-05!GO:0008654;phospholipid biosynthetic process;2.04068655656956e-05!GO:0043623;cellular protein complex assembly;2.50472474574585e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.65483240074405e-05!GO:0005525;GTP binding;2.7772727315012e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.02351274327712e-05!GO:0016607;nuclear speck;3.14389003008445e-05!GO:0051187;cofactor catabolic process;3.28696979293296e-05!GO:0005770;late endosome;3.2979071089087e-05!GO:0006403;RNA localization;3.39177242335688e-05!GO:0009109;coenzyme catabolic process;3.55472958713881e-05!GO:0050657;nucleic acid transport;3.72179852777393e-05!GO:0051236;establishment of RNA localization;3.72179852777393e-05!GO:0050658;RNA transport;3.72179852777393e-05!GO:0000245;spliceosome assembly;3.75783372195057e-05!GO:0051329;interphase of mitotic cell cycle;3.76760942669524e-05!GO:0003697;single-stranded DNA binding;4.06253388837462e-05!GO:0004298;threonine endopeptidase activity;4.20161984916334e-05!GO:0000323;lytic vacuole;5.21117508845494e-05!GO:0005764;lysosome;5.21117508845494e-05!GO:0007010;cytoskeleton organization and biogenesis;5.40778399767426e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.53719795424566e-05!GO:0030867;rough endoplasmic reticulum membrane;5.55631667397168e-05!GO:0000786;nucleosome;5.96312662894502e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.71283990244018e-05!GO:0008092;cytoskeletal protein binding;7.02261290444472e-05!GO:0016310;phosphorylation;7.17905691165668e-05!GO:0051325;interphase;7.24863926920002e-05!GO:0016563;transcription activator activity;7.26308021972241e-05!GO:0016049;cell growth;7.81983434530126e-05!GO:0008361;regulation of cell size;8.24414339862508e-05!GO:0051170;nuclear import;9.12324013491769e-05!GO:0008026;ATP-dependent helicase activity;0.00010280527905548!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000104358654883012!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000105258913982461!GO:0005905;coated pit;0.000106789937118468!GO:0006626;protein targeting to mitochondrion;0.000121250463516315!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000126925632887298!GO:0045786;negative regulation of progression through cell cycle;0.000132405006685202!GO:0001558;regulation of cell growth;0.000135051383517027!GO:0030029;actin filament-based process;0.000140814096296878!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147287923250012!GO:0006839;mitochondrial transport;0.000159649752416205!GO:0043681;protein import into mitochondrion;0.000160806275476909!GO:0006613;cotranslational protein targeting to membrane;0.000163104583751786!GO:0006091;generation of precursor metabolites and energy;0.000164777930851358!GO:0016859;cis-trans isomerase activity;0.000164913814862562!GO:0006606;protein import into nucleus;0.00016514309093265!GO:0032561;guanyl ribonucleotide binding;0.000165832628383688!GO:0019001;guanyl nucleotide binding;0.000165832628383688!GO:0016787;hydrolase activity;0.000167055890507242!GO:0033116;ER-Golgi intermediate compartment membrane;0.000189993505216202!GO:0051789;response to protein stimulus;0.000190544739162805!GO:0006986;response to unfolded protein;0.000190544739162805!GO:0009165;nucleotide biosynthetic process;0.000193934263181644!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000197585740778792!GO:0016568;chromatin modification;0.000203592168763543!GO:0030118;clathrin coat;0.000217059853879235!GO:0005798;Golgi-associated vesicle;0.000218824758309432!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000240923969663873!GO:0003713;transcription coactivator activity;0.000245800683985237!GO:0016481;negative regulation of transcription;0.000266360771898655!GO:0004386;helicase activity;0.00027240346299485!GO:0030176;integral to endoplasmic reticulum membrane;0.000316246192625048!GO:0031968;organelle outer membrane;0.000332112236105733!GO:0065009;regulation of a molecular function;0.000338951685752941!GO:0007243;protein kinase cascade;0.000340891583223358!GO:0030133;transport vesicle;0.000359504660927903!GO:0016044;membrane organization and biogenesis;0.000359504660927903!GO:0008033;tRNA processing;0.000393621090655851!GO:0008610;lipid biosynthetic process;0.000446418601176301!GO:0008250;oligosaccharyl transferase complex;0.000455089795296826!GO:0051427;hormone receptor binding;0.000461828018878714!GO:0051028;mRNA transport;0.00049560359561881!GO:0001726;ruffle;0.000511545285781925!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000527390368156785!GO:0019867;outer membrane;0.000551530830338188!GO:0048471;perinuclear region of cytoplasm;0.000552359206165814!GO:0044452;nucleolar part;0.000552901670644495!GO:0005741;mitochondrial outer membrane;0.000553937473700314!GO:0043021;ribonucleoprotein binding;0.000569960165013164!GO:0005819;spindle;0.000592040107670041!GO:0000151;ubiquitin ligase complex;0.000592880751497538!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000595974432140841!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000600418531775004!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000622100622620537!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000629880597467655!GO:0005769;early endosome;0.000733980634743888!GO:0008632;apoptotic program;0.000755984642215888!GO:0005048;signal sequence binding;0.000783868472476693!GO:0019843;rRNA binding;0.000858342327183337!GO:0051920;peroxiredoxin activity;0.000875553240829103!GO:0048518;positive regulation of biological process;0.0008940868814536!GO:0035257;nuclear hormone receptor binding;0.000900556248587489!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000902718610639237!GO:0019899;enzyme binding;0.000903612508799518!GO:0030119;AP-type membrane coat adaptor complex;0.00091995358896971!GO:0048468;cell development;0.000923540151844278!GO:0007264;small GTPase mediated signal transduction;0.00092446581088124!GO:0005885;Arp2/3 protein complex;0.000936613606396138!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00102390741369314!GO:0046474;glycerophospholipid biosynthetic process;0.00103314159203041!GO:0015980;energy derivation by oxidation of organic compounds;0.0010368921382783!GO:0007006;mitochondrial membrane organization and biogenesis;0.0010550178896929!GO:0018196;peptidyl-asparagine modification;0.00114026487124968!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00114026487124968!GO:0003724;RNA helicase activity;0.0011836267819041!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00126232896194326!GO:0030131;clathrin adaptor complex;0.00128494330677197!GO:0006261;DNA-dependent DNA replication;0.00129722265571122!GO:0043566;structure-specific DNA binding;0.00135309867122818!GO:0016126;sterol biosynthetic process;0.00147222030886275!GO:0005684;U2-dependent spliceosome;0.00160022612343816!GO:0050789;regulation of biological process;0.00162709222480793!GO:0004576;oligosaccharyl transferase activity;0.00179299734657335!GO:0006414;translational elongation;0.00180185171444027!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00180462934863912!GO:0005657;replication fork;0.00183484810168328!GO:0005791;rough endoplasmic reticulum;0.00212938591047681!GO:0006082;organic acid metabolic process;0.00212938591047681!GO:0044262;cellular carbohydrate metabolic process;0.00217441452841089!GO:0051087;chaperone binding;0.00217441452841089!GO:0030880;RNA polymerase complex;0.00237008485662128!GO:0019752;carboxylic acid metabolic process;0.00237911737021101!GO:0043065;positive regulation of apoptosis;0.00239640416269111!GO:0030658;transport vesicle membrane;0.00247899776326103!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00254315999438141!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00254315999438141!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00254315999438141!GO:0045941;positive regulation of transcription;0.00266489249979713!GO:0030132;clathrin coat of coated pit;0.00267518575786508!GO:0008243;plasminogen activator activity;0.00268144626519945!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00272113270396936!GO:0051168;nuclear export;0.00274851315934919!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00283095351950668!GO:0005758;mitochondrial intermembrane space;0.00290038864472937!GO:0043068;positive regulation of programmed cell death;0.00303669184834282!GO:0031072;heat shock protein binding;0.00304409524968626!GO:0030027;lamellipodium;0.00327716346037125!GO:0005813;centrosome;0.00337887031937306!GO:0046489;phosphoinositide biosynthetic process;0.00339876403776487!GO:0040008;regulation of growth;0.00340197605799634!GO:0005874;microtubule;0.00340197605799634!GO:0043488;regulation of mRNA stability;0.00343003100673411!GO:0043487;regulation of RNA stability;0.00343003100673411!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00349977624185769!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00349977624185769!GO:0001666;response to hypoxia;0.00371078195832777!GO:0008637;apoptotic mitochondrial changes;0.00389335257320443!GO:0030125;clathrin vesicle coat;0.003974046046426!GO:0030665;clathrin coated vesicle membrane;0.003974046046426!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00399224704112609!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00399224704112609!GO:0043284;biopolymer biosynthetic process;0.00409024397292319!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00409691764127748!GO:0031970;organelle envelope lumen;0.0041039729035125!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00415270990782184!GO:0006979;response to oxidative stress;0.00415669202288893!GO:0046483;heterocycle metabolic process;0.00420682733742499!GO:0045893;positive regulation of transcription, DNA-dependent;0.00425953761438843!GO:0017166;vinculin binding;0.00443639244652575!GO:0008186;RNA-dependent ATPase activity;0.00455564656432815!GO:0048487;beta-tubulin binding;0.00464953469450093!GO:0046467;membrane lipid biosynthetic process;0.00477197026021659!GO:0030660;Golgi-associated vesicle membrane;0.00495062858845879!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0050230455603106!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0050230455603106!GO:0009116;nucleoside metabolic process;0.00510286696477386!GO:0045892;negative regulation of transcription, DNA-dependent;0.0051442572773124!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0051670918642992!GO:0015399;primary active transmembrane transporter activity;0.0051670918642992!GO:0003684;damaged DNA binding;0.00524437054097862!GO:0006612;protein targeting to membrane;0.00524587852865136!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0054304759183705!GO:0000428;DNA-directed RNA polymerase complex;0.0054304759183705!GO:0006950;response to stress;0.00545340089013411!GO:0016272;prefoldin complex;0.00551019887679118!GO:0006695;cholesterol biosynthetic process;0.00566475782183855!GO:0006383;transcription from RNA polymerase III promoter;0.00571691151640554!GO:0006520;amino acid metabolic process;0.00572592420668419!GO:0006401;RNA catabolic process;0.00598972302245194!GO:0007088;regulation of mitosis;0.00600936745676871!GO:0009112;nucleobase metabolic process;0.0061171956639339!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00619650194338125!GO:0015002;heme-copper terminal oxidase activity;0.00619650194338125!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00619650194338125!GO:0004129;cytochrome-c oxidase activity;0.00619650194338125!GO:0032508;DNA duplex unwinding;0.00644337377911155!GO:0032392;DNA geometric change;0.00644337377911155!GO:0030659;cytoplasmic vesicle membrane;0.00674268312409454!GO:0007051;spindle organization and biogenesis;0.00682804840799181!GO:0031902;late endosome membrane;0.00694390992115653!GO:0005774;vacuolar membrane;0.00702727384011438!GO:0005815;microtubule organizing center;0.00731162917561244!GO:0051252;regulation of RNA metabolic process;0.00754441411158631!GO:0015992;proton transport;0.00754441411158631!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00791887280652769!GO:0000775;chromosome, pericentric region;0.00815866801349021!GO:0006818;hydrogen transport;0.00832825124353964!GO:0006595;polyamine metabolic process;0.00859043847651886!GO:0006220;pyrimidine nucleotide metabolic process;0.00871715296763857!GO:0006402;mRNA catabolic process;0.00872026919182438!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00872026919182438!GO:0016363;nuclear matrix;0.00878338622404901!GO:0045792;negative regulation of cell size;0.00914049852934318!GO:0051101;regulation of DNA binding;0.00943287232515901!GO:0030308;negative regulation of cell growth;0.00963895840677806!GO:0051540;metal cluster binding;0.00995489019937105!GO:0051536;iron-sulfur cluster binding;0.00995489019937105!GO:0008094;DNA-dependent ATPase activity;0.00999868619876403!GO:0004004;ATP-dependent RNA helicase activity;0.0101810422564347!GO:0005862;muscle thin filament tropomyosin;0.0105153619737219!GO:0031301;integral to organelle membrane;0.0106381766338103!GO:0000075;cell cycle checkpoint;0.011152606802457!GO:0008139;nuclear localization sequence binding;0.0121825483683933!GO:0001836;release of cytochrome c from mitochondria;0.0123633526313927!GO:0006268;DNA unwinding during replication;0.0126316177262697!GO:0019318;hexose metabolic process;0.0127489211351428!GO:0006778;porphyrin metabolic process;0.0134481936024156!GO:0033013;tetrapyrrole metabolic process;0.0134481936024156!GO:0051098;regulation of binding;0.0141866429958479!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0141999423408672!GO:0009967;positive regulation of signal transduction;0.0144759556548101!GO:0005765;lysosomal membrane;0.0146074726127021!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0147042170419229!GO:0006509;membrane protein ectodomain proteolysis;0.0147042170419229!GO:0033619;membrane protein proteolysis;0.0147042170419229!GO:0005996;monosaccharide metabolic process;0.0152807096437158!GO:0003779;actin binding;0.0153071843744584!GO:0050790;regulation of catalytic activity;0.0153625949585238!GO:0006458;'de novo' protein folding;0.0157415790986566!GO:0051084;'de novo' posttranslational protein folding;0.0157415790986566!GO:0007040;lysosome organization and biogenesis;0.0159336068722619!GO:0044433;cytoplasmic vesicle part;0.0161133901363231!GO:0051287;NAD binding;0.0165191789436863!GO:0035258;steroid hormone receptor binding;0.0165200519470423!GO:0000049;tRNA binding;0.0172695483377963!GO:0006740;NADPH regeneration;0.0174382434467395!GO:0006098;pentose-phosphate shunt;0.0174382434467395!GO:0003756;protein disulfide isomerase activity;0.0177785592613811!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0177785592613811!GO:0008283;cell proliferation;0.0179103946807315!GO:0005869;dynactin complex;0.0180430138727297!GO:0048500;signal recognition particle;0.0180896744821723!GO:0006779;porphyrin biosynthetic process;0.0181288295514601!GO:0033014;tetrapyrrole biosynthetic process;0.0181288295514601!GO:0044437;vacuolar part;0.0184355935813512!GO:0031418;L-ascorbic acid binding;0.0185585519177307!GO:0015631;tubulin binding;0.0185585519177307!GO:0000086;G2/M transition of mitotic cell cycle;0.0186087162905317!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.018736704921968!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0191715514275477!GO:0016860;intramolecular oxidoreductase activity;0.0196107863194602!GO:0043154;negative regulation of caspase activity;0.0196216428290209!GO:0030433;ER-associated protein catabolic process;0.0196216428290209!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0196216428290209!GO:0051539;4 iron, 4 sulfur cluster binding;0.0196364890778397!GO:0016741;transferase activity, transferring one-carbon groups;0.0197563338093313!GO:0019206;nucleoside kinase activity;0.0199504158515608!GO:0003729;mRNA binding;0.0199504158515608!GO:0030134;ER to Golgi transport vesicle;0.020545289978819!GO:0042168;heme metabolic process;0.0206939257098045!GO:0030663;COPI coated vesicle membrane;0.0210821466629086!GO:0030126;COPI vesicle coat;0.0210821466629086!GO:0046822;regulation of nucleocytoplasmic transport;0.0212704511368315!GO:0031543;peptidyl-proline dioxygenase activity;0.0216901646899687!GO:0006897;endocytosis;0.0219267679745763!GO:0010324;membrane invagination;0.0219267679745763!GO:0006611;protein export from nucleus;0.0220517777674213!GO:0045926;negative regulation of growth;0.0221167938886298!GO:0006007;glucose catabolic process;0.0221581225727274!GO:0031124;mRNA 3'-end processing;0.022261033387559!GO:0000209;protein polyubiquitination;0.0223455894628959!GO:0005832;chaperonin-containing T-complex;0.023015030942611!GO:0035035;histone acetyltransferase binding;0.0230797595818025!GO:0006650;glycerophospholipid metabolic process;0.0235709817512263!GO:0005637;nuclear inner membrane;0.0239979333429121!GO:0008312;7S RNA binding;0.0239979333429121!GO:0006506;GPI anchor biosynthetic process;0.0241401841504856!GO:0051338;regulation of transferase activity;0.0243556922177136!GO:0008652;amino acid biosynthetic process;0.0244513149107175!GO:0009303;rRNA transcription;0.0249049257999187!GO:0000082;G1/S transition of mitotic cell cycle;0.025259782317131!GO:0050662;coenzyme binding;0.0253020290746123!GO:0003678;DNA helicase activity;0.0253385855290757!GO:0009124;nucleoside monophosphate biosynthetic process;0.0255232044680536!GO:0009123;nucleoside monophosphate metabolic process;0.0255232044680536!GO:0008538;proteasome activator activity;0.0257707123064059!GO:0051085;chaperone cofactor-dependent protein folding;0.0258547294327832!GO:0008168;methyltransferase activity;0.0260232728751346!GO:0000059;protein import into nucleus, docking;0.0260761794523976!GO:0006783;heme biosynthetic process;0.0266558586208541!GO:0004680;casein kinase activity;0.0270221149877824!GO:0030508;thiol-disulfide exchange intermediate activity;0.0271158550372561!GO:0040029;regulation of gene expression, epigenetic;0.0274035711925692!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0278559202730416!GO:0007021;tubulin folding;0.0286616051271578!GO:0030137;COPI-coated vesicle;0.0286616051271578!GO:0008629;induction of apoptosis by intracellular signals;0.0286874035568335!GO:0016301;kinase activity;0.0287259168347289!GO:0009119;ribonucleoside metabolic process;0.0288057826748854!GO:0006497;protein amino acid lipidation;0.029001683004387!GO:0043022;ribosome binding;0.0290450376387965!GO:0006917;induction of apoptosis;0.0291967374814966!GO:0006891;intra-Golgi vesicle-mediated transport;0.0292588810054143!GO:0043492;ATPase activity, coupled to movement of substances;0.0292687672827379!GO:0033673;negative regulation of kinase activity;0.0293769921971418!GO:0006469;negative regulation of protein kinase activity;0.0293769921971418!GO:0051270;regulation of cell motility;0.0295675840457717!GO:0030031;cell projection biogenesis;0.0295870623806926!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0297684231638147!GO:0045039;protein import into mitochondrial inner membrane;0.0297684231638147!GO:0006144;purine base metabolic process;0.0297892639819917!GO:0030127;COPII vesicle coat;0.0301529001189553!GO:0012507;ER to Golgi transport vesicle membrane;0.0301529001189553!GO:0003711;transcription elongation regulator activity;0.0305120837565259!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0310445418611382!GO:0000096;sulfur amino acid metabolic process;0.0313465782675519!GO:0030521;androgen receptor signaling pathway;0.0318107330570789!GO:0031529;ruffle organization and biogenesis;0.0318107330570789!GO:0032507;maintenance of cellular protein localization;0.0320276468235897!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0320276468235897!GO:0030145;manganese ion binding;0.0324978595135389!GO:0016197;endosome transport;0.0331345541569975!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0334297856623749!GO:0007033;vacuole organization and biogenesis;0.0339549069750996!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0347404553943683!GO:0045047;protein targeting to ER;0.0347404553943683!GO:0043549;regulation of kinase activity;0.03506493709539!GO:0043189;H4/H2A histone acetyltransferase complex;0.0350958542169051!GO:0006289;nucleotide-excision repair;0.0356411997304086!GO:0051052;regulation of DNA metabolic process;0.0356918928511818!GO:0051348;negative regulation of transferase activity;0.0358636227632021!GO:0030384;phosphoinositide metabolic process;0.0359077700382681!GO:0019798;procollagen-proline dioxygenase activity;0.0364084129453377!GO:0006505;GPI anchor metabolic process;0.0370531284006423!GO:0012502;induction of programmed cell death;0.037397630755454!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0384453677492253!GO:0048144;fibroblast proliferation;0.0389458850447212!GO:0048145;regulation of fibroblast proliferation;0.0389458850447212!GO:0006352;transcription initiation;0.0394253513635356!GO:0046870;cadmium ion binding;0.0407817233962423!GO:0031371;ubiquitin conjugating enzyme complex;0.0416255985270894!GO:0012506;vesicle membrane;0.0416854704566382!GO:0051128;regulation of cellular component organization and biogenesis;0.0417452147947449!GO:0042158;lipoprotein biosynthetic process;0.0420372255011483!GO:0046519;sphingoid metabolic process;0.0422046367285494!GO:0006405;RNA export from nucleus;0.0423961423162881!GO:0015036;disulfide oxidoreductase activity;0.0426674429468575!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0426674429468575!GO:0006354;RNA elongation;0.0427918694781415!GO:0006275;regulation of DNA replication;0.0428583368558592!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0436712567500419!GO:0016791;phosphoric monoester hydrolase activity;0.0442902678577199!GO:0006643;membrane lipid metabolic process;0.0446150700048834!GO:0031272;regulation of pseudopodium formation;0.0454102013982122!GO:0031269;pseudopodium formation;0.0454102013982122!GO:0031344;regulation of cell projection organization and biogenesis;0.0454102013982122!GO:0031268;pseudopodium organization and biogenesis;0.0454102013982122!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0454102013982122!GO:0031274;positive regulation of pseudopodium formation;0.0454102013982122!GO:0008154;actin polymerization and/or depolymerization;0.0458351409070648!GO:0009161;ribonucleoside monophosphate metabolic process;0.0461593269392941!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0461593269392941!GO:0007015;actin filament organization;0.0463073148077718!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0463763653355772!GO:0010257;NADH dehydrogenase complex assembly;0.0463763653355772!GO:0033108;mitochondrial respiratory chain complex assembly;0.0463763653355772!GO:0033559;unsaturated fatty acid metabolic process;0.0464597382044075!GO:0006636;unsaturated fatty acid biosynthetic process;0.0464597382044075!GO:0003746;translation elongation factor activity;0.0471353454192424!GO:0040011;locomotion;0.0471353454192424!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0472815371992444!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0473128607539882!GO:0008180;signalosome;0.0473128607539882!GO:0007050;cell cycle arrest;0.0473128607539882!GO:0004518;nuclease activity;0.0473132680661814!GO:0032906;transforming growth factor-beta2 production;0.0477951690503982!GO:0032909;regulation of transforming growth factor-beta2 production;0.0477951690503982!GO:0006541;glutamine metabolic process;0.0477951690503982!GO:0030911;TPR domain binding;0.0481994723779553!GO:0043281;regulation of caspase activity;0.0489059792190827!GO:0035267;NuA4 histone acetyltransferase complex;0.0489727902362933!GO:0043433;negative regulation of transcription factor activity;0.0490563852779576 | |||
|sample_id=11510 | |sample_id=11510 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=GZF1:1.77795916531;SNAI1..3:1.44707786997;TFCP2:1.37877251953;XCPE1{core}:1.31656078077;PBX1:1.30819104442;SRF:1.26340664187;LEF1_TCF7_TCF7L1,2:1.22412897826;GTF2A1,2:1.22281659213;HOX{A5,B5}:1.16280602126;ZEB1:1.16143316644;ZNF148:1.15078551392;TBP:1.11340701085;TEAD1:1.0820150788;MYOD1:1.06897090223;ZNF423:1.04500984015;TLX1..3_NFIC{dimer}:0.982366297008;ESRRA:0.940684329722;TBX4,5:0.929162615475;EBF1:0.890770017142;LMO2:0.884788800273;POU2F1..3:0.864884847092;bHLH_family:0.861296848222;JUN:0.842530908024;HAND1,2:0.813277695106;TP53:0.680529813723;ZIC1..3:0.667013100571;NKX2-3_NKX2-5:0.648620523075;GLI1..3:0.621093361179;SP1:0.59489887867;NR3C1:0.571500787347;NANOG:0.561804080901;NR5A1,2:0.553926120621;PPARG:0.536657779567;SOX{8,9,10}:0.450542044267;LHX3,4:0.444345294216;HSF1,2:0.442562949023;HIC1:0.436899873168;POU6F1:0.432865300675;HIF1A:0.42169960307;STAT5{A,B}:0.393567011767;FOS_FOS{B,L1}_JUN{B,D}:0.388776070067;PAX8:0.372766636562;RXRA_VDR{dimer}:0.358165650163;SPZ1:0.357341332731;TFAP2{A,C}:0.33079477873;TAL1_TCF{3,4,12}:0.318144460051;GFI1B:0.312172030433;TFAP2B:0.302687710641;BACH2:0.301571361166;ZBTB6:0.298883836201;CRX:0.29646764048;HNF1A:0.287441594198;FOSL2:0.285455194249;FOXM1:0.241183977459;SOX2:0.239022736606;NR6A1:0.238237519649;E2F1..5:0.235530795299;NFE2L1:0.232434165048;ONECUT1,2:0.220177520804;PITX1..3:0.204337746489;MTF1:0.198328619429;GFI1:0.190943712984;FOXL1:0.182354903083;T:0.179511784172;EP300:0.162053014162;CDC5L:0.158898118578;KLF4:0.153773449774;TFDP1:0.137902129773;IKZF1:0.136927116066;ZNF238:0.12793411654;FOX{I1,J2}:0.125000531521;HNF4A_NR2F1,2:0.0957264034017;HLF:0.0950144033232;NFE2:0.0904929919813;ELK1,4_GABP{A,B1}:0.0863790488644;NFE2L2:0.0796129553954;FOXQ1:0.0791181068139;HOX{A4,D4}:0.0782380853475;RREB1:0.0564328030586;RXR{A,B,G}:0.0525593533478;ESR1:0.0505283123066;GATA6:0.0334847743954;GTF2I:0.0190048435633;NFY{A,B,C}:0.00817384733592;MAZ:0.00505362157425;HES1:0.00291960683937;SOX17:0.00199252759526;POU3F1..4:0.00187738669471;ARID5B:-0.0166659653545;DBP:-0.0197999102569;TEF:-0.0228066430304;MEF2{A,B,C,D}:-0.026007785142;FOX{F1,F2,J1}:-0.0509576362321;AR:-0.0603218094738;PRRX1,2:-0.122808768491;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.134276129486;HOXA9_MEIS1:-0.138148152309;NFKB1_REL_RELA:-0.142573602818;ZNF143:-0.152523354126;PAX5:-0.16082463118;POU1F1:-0.169042230788;ETS1,2:-0.180835563104;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.181953476196;UFEwm:-0.193225681664;NKX3-2:-0.19419742271;REST:-0.199100797652;OCT4_SOX2{dimer}:-0.215859557582;MTE{core}:-0.217460341359;ZNF384:-0.224278353146;ATF6:-0.228614907356;MED-1{core}:-0.245232346544;TFAP4:-0.247630907385;ATF2:-0.254464723001;RUNX1..3:-0.255715821517;MYB:-0.265292301489;PATZ1:-0.276161699891;CEBPA,B_DDIT3:-0.290353209417;NR1H4:-0.30508538148;STAT2,4,6:-0.305246493514;NFIL3:-0.320371430296;HMX1:-0.327300166008;MYBL2:-0.328041364177;AIRE:-0.344216266992;TOPORS:-0.346865580828;NHLH1,2:-0.36528001512;EN1,2:-0.367305102408;POU5F1:-0.370151149016;FOXA2:-0.376609633049;RFX1:-0.385447488007;MZF1:-0.387836207998;PAX1,9:-0.399453192997;HOX{A6,A7,B6,B7}:-0.40843700913;ALX4:-0.419650973728;VSX1,2:-0.427639873252;XBP1:-0.435500132982;RORA:-0.460444607612;ADNP_IRX_SIX_ZHX:-0.462107767097;SPIB:-0.463407578267;RFX2..5_RFXANK_RFXAP:-0.493103013559;GCM1,2:-0.521378071486;SMAD1..7,9:-0.527541972883;NKX2-2,8:-0.539363576167;NKX3-1:-0.552718528477;NRF1:-0.57031076793;CUX2:-0.611983909839;HMGA1,2:-0.616921037342;SOX5:-0.620475980883;MAFB:-0.633247413588;EGR1..3:-0.642506683325;TLX2:-0.653551016317;ALX1:-0.679280602338;ZFP161:-0.684585413981;ELF1,2,4:-0.685561506913;PAX3,7:-0.686257433456;NFATC1..3:-0.702093455277;PRDM1:-0.726511250507;PAX2:-0.727268764825;NKX6-1,2:-0.728268570213;YY1:-0.728462457036;AHR_ARNT_ARNT2:-0.734859984488;HBP1_HMGB_SSRP1_UBTF:-0.744583666349;MYFfamily:-0.74528214581;FOXO1,3,4:-0.747389513578;SPI1:-0.767551198741;EVI1:-0.795298756718;PAX4:-0.812962386165;TGIF1:-0.82607367344;FOX{D1,D2}:-0.840398540926;BREu{core}:-0.873120195397;CDX1,2,4:-0.90355869678;FOXP1:-0.915884750378;DMAP1_NCOR{1,2}_SMARC:-0.917289549949;FOXN1:-0.929820502292;FOXP3:-0.956050853812;STAT1,3:-0.971487620905;IRF7:-0.978519659;PDX1:-0.989155861569;ATF4:-1.00129345632;IRF1,2:-1.01033111;ATF5_CREB3:-1.01171946518;CREB1:-1.01866891582;PAX6:-1.0348597074;NANOG{mouse}:-1.09197305763;FOXD3:-1.097040582;ZBTB16:-1.12345011267;NFIX:-1.18972923882;NKX2-1,4:-1.19101331759;IKZF2:-1.2661562236;GATA4:-1.46624617171;RBPJ:-1.47991944335;SREBF1,2:-1.58707860784;BPTF:-1.68211011279 | |top_motifs=GZF1:1.77795916531;SNAI1..3:1.44707786997;TFCP2:1.37877251953;XCPE1{core}:1.31656078077;PBX1:1.30819104442;SRF:1.26340664187;LEF1_TCF7_TCF7L1,2:1.22412897826;GTF2A1,2:1.22281659213;HOX{A5,B5}:1.16280602126;ZEB1:1.16143316644;ZNF148:1.15078551392;TBP:1.11340701085;TEAD1:1.0820150788;MYOD1:1.06897090223;ZNF423:1.04500984015;TLX1..3_NFIC{dimer}:0.982366297008;ESRRA:0.940684329722;TBX4,5:0.929162615475;EBF1:0.890770017142;LMO2:0.884788800273;POU2F1..3:0.864884847092;bHLH_family:0.861296848222;JUN:0.842530908024;HAND1,2:0.813277695106;TP53:0.680529813723;ZIC1..3:0.667013100571;NKX2-3_NKX2-5:0.648620523075;GLI1..3:0.621093361179;SP1:0.59489887867;NR3C1:0.571500787347;NANOG:0.561804080901;NR5A1,2:0.553926120621;PPARG:0.536657779567;SOX{8,9,10}:0.450542044267;LHX3,4:0.444345294216;HSF1,2:0.442562949023;HIC1:0.436899873168;POU6F1:0.432865300675;HIF1A:0.42169960307;STAT5{A,B}:0.393567011767;FOS_FOS{B,L1}_JUN{B,D}:0.388776070067;PAX8:0.372766636562;RXRA_VDR{dimer}:0.358165650163;SPZ1:0.357341332731;TFAP2{A,C}:0.33079477873;TAL1_TCF{3,4,12}:0.318144460051;GFI1B:0.312172030433;TFAP2B:0.302687710641;BACH2:0.301571361166;ZBTB6:0.298883836201;CRX:0.29646764048;HNF1A:0.287441594198;FOSL2:0.285455194249;FOXM1:0.241183977459;SOX2:0.239022736606;NR6A1:0.238237519649;E2F1..5:0.235530795299;NFE2L1:0.232434165048;ONECUT1,2:0.220177520804;PITX1..3:0.204337746489;MTF1:0.198328619429;GFI1:0.190943712984;FOXL1:0.182354903083;T:0.179511784172;EP300:0.162053014162;CDC5L:0.158898118578;KLF4:0.153773449774;TFDP1:0.137902129773;IKZF1:0.136927116066;ZNF238:0.12793411654;FOX{I1,J2}:0.125000531521;HNF4A_NR2F1,2:0.0957264034017;HLF:0.0950144033232;NFE2:0.0904929919813;ELK1,4_GABP{A,B1}:0.0863790488644;NFE2L2:0.0796129553954;FOXQ1:0.0791181068139;HOX{A4,D4}:0.0782380853475;RREB1:0.0564328030586;RXR{A,B,G}:0.0525593533478;ESR1:0.0505283123066;GATA6:0.0334847743954;GTF2I:0.0190048435633;NFY{A,B,C}:0.00817384733592;MAZ:0.00505362157425;HES1:0.00291960683937;SOX17:0.00199252759526;POU3F1..4:0.00187738669471;ARID5B:-0.0166659653545;DBP:-0.0197999102569;TEF:-0.0228066430304;MEF2{A,B,C,D}:-0.026007785142;FOX{F1,F2,J1}:-0.0509576362321;AR:-0.0603218094738;PRRX1,2:-0.122808768491;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.134276129486;HOXA9_MEIS1:-0.138148152309;NFKB1_REL_RELA:-0.142573602818;ZNF143:-0.152523354126;PAX5:-0.16082463118;POU1F1:-0.169042230788;ETS1,2:-0.180835563104;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.181953476196;UFEwm:-0.193225681664;NKX3-2:-0.19419742271;REST:-0.199100797652;OCT4_SOX2{dimer}:-0.215859557582;MTE{core}:-0.217460341359;ZNF384:-0.224278353146;ATF6:-0.228614907356;MED-1{core}:-0.245232346544;TFAP4:-0.247630907385;ATF2:-0.254464723001;RUNX1..3:-0.255715821517;MYB:-0.265292301489;PATZ1:-0.276161699891;CEBPA,B_DDIT3:-0.290353209417;NR1H4:-0.30508538148;STAT2,4,6:-0.305246493514;NFIL3:-0.320371430296;HMX1:-0.327300166008;MYBL2:-0.328041364177;AIRE:-0.344216266992;TOPORS:-0.346865580828;NHLH1,2:-0.36528001512;EN1,2:-0.367305102408;POU5F1:-0.370151149016;FOXA2:-0.376609633049;RFX1:-0.385447488007;MZF1:-0.387836207998;PAX1,9:-0.399453192997;HOX{A6,A7,B6,B7}:-0.40843700913;ALX4:-0.419650973728;VSX1,2:-0.427639873252;XBP1:-0.435500132982;RORA:-0.460444607612;ADNP_IRX_SIX_ZHX:-0.462107767097;SPIB:-0.463407578267;RFX2..5_RFXANK_RFXAP:-0.493103013559;GCM1,2:-0.521378071486;SMAD1..7,9:-0.527541972883;NKX2-2,8:-0.539363576167;NKX3-1:-0.552718528477;NRF1:-0.57031076793;CUX2:-0.611983909839;HMGA1,2:-0.616921037342;SOX5:-0.620475980883;MAFB:-0.633247413588;EGR1..3:-0.642506683325;TLX2:-0.653551016317;ALX1:-0.679280602338;ZFP161:-0.684585413981;ELF1,2,4:-0.685561506913;PAX3,7:-0.686257433456;NFATC1..3:-0.702093455277;PRDM1:-0.726511250507;PAX2:-0.727268764825;NKX6-1,2:-0.728268570213;YY1:-0.728462457036;AHR_ARNT_ARNT2:-0.734859984488;HBP1_HMGB_SSRP1_UBTF:-0.744583666349;MYFfamily:-0.74528214581;FOXO1,3,4:-0.747389513578;SPI1:-0.767551198741;EVI1:-0.795298756718;PAX4:-0.812962386165;TGIF1:-0.82607367344;FOX{D1,D2}:-0.840398540926;BREu{core}:-0.873120195397;CDX1,2,4:-0.90355869678;FOXP1:-0.915884750378;DMAP1_NCOR{1,2}_SMARC:-0.917289549949;FOXN1:-0.929820502292;FOXP3:-0.956050853812;STAT1,3:-0.971487620905;IRF7:-0.978519659;PDX1:-0.989155861569;ATF4:-1.00129345632;IRF1,2:-1.01033111;ATF5_CREB3:-1.01171946518;CREB1:-1.01866891582;PAX6:-1.0348597074;NANOG{mouse}:-1.09197305763;FOXD3:-1.097040582;ZBTB16:-1.12345011267;NFIX:-1.18972923882;NKX2-1,4:-1.19101331759;IKZF2:-1.2661562236;GATA4:-1.46624617171;RBPJ:-1.47991944335;SREBF1,2:-1.58707860784;BPTF:-1.68211011279 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11510-119G7;search_select_hide=table117:FF:11510-119G7 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Alveolar Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11325 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11325
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11325
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.983 |
| 10 | 10 | 0.259 |
| 100 | 100 | 0.938 |
| 101 | 101 | 0.123 |
| 102 | 102 | 0.959 |
| 103 | 103 | 0.32 |
| 104 | 104 | 0.649 |
| 105 | 105 | 0.075 |
| 106 | 106 | 0.0284 |
| 107 | 107 | 0.0146 |
| 108 | 108 | 0.578 |
| 109 | 109 | 0.0243 |
| 11 | 11 | 0.308 |
| 110 | 110 | 0.184 |
| 111 | 111 | 0.433 |
| 112 | 112 | 0.593 |
| 113 | 113 | 0.958 |
| 114 | 114 | 0.78 |
| 115 | 115 | 0.918 |
| 116 | 116 | 0.157 |
| 117 | 117 | 0.845 |
| 118 | 118 | 0.8 |
| 119 | 119 | 0.489 |
| 12 | 12 | 0.931 |
| 120 | 120 | 0.393 |
| 121 | 121 | 0.24 |
| 122 | 122 | 0.245 |
| 123 | 123 | 0.062 |
| 124 | 124 | 0.872 |
| 125 | 125 | 0.34 |
| 126 | 126 | 0.41 |
| 127 | 127 | 0.779 |
| 128 | 128 | 0.184 |
| 129 | 129 | 0.173 |
| 13 | 13 | 0.251 |
| 130 | 130 | 0.216 |
| 131 | 131 | 0.877 |
| 132 | 132 | 0.224 |
| 133 | 133 | 0.307 |
| 134 | 134 | 0.443 |
| 135 | 135 | 0.291 |
| 136 | 136 | 0.419 |
| 137 | 137 | 0.155 |
| 138 | 138 | 0.358 |
| 139 | 139 | 0.806 |
| 14 | 14 | 0.88 |
| 140 | 140 | 0.988 |
| 141 | 141 | 0.4 |
| 142 | 142 | 0.718 |
| 143 | 143 | 0.334 |
| 144 | 144 | 0.372 |
| 145 | 145 | 0.214 |
| 146 | 146 | 0.0329 |
| 147 | 147 | 0.974 |
| 148 | 148 | 0.185 |
| 149 | 149 | 0.114 |
| 15 | 15 | 0.386 |
| 150 | 150 | 0.342 |
| 151 | 151 | 0.543 |
| 152 | 152 | 0.0503 |
| 153 | 153 | 0.681 |
| 154 | 154 | 0.343 |
| 155 | 155 | 0.4 |
| 156 | 156 | 0.139 |
| 157 | 157 | 0.524 |
| 158 | 158 | 0.676 |
| 159 | 159 | 0.81 |
| 16 | 16 | 0.218 |
| 160 | 160 | 0.0366 |
| 161 | 161 | 0.641 |
| 162 | 162 | 0.0998 |
| 163 | 163 | 0.568 |
| 164 | 164 | 0.356 |
| 165 | 165 | 0.18 |
| 166 | 166 | 0.587 |
| 167 | 167 | 0.0715 |
| 168 | 168 | 0.758 |
| 169 | 169 | 0.119 |
| 17 | 17 | 0.225 |
| 18 | 18 | 0.154 |
| 19 | 19 | 0.486 |
| 2 | 2 | 0.193 |
| 20 | 20 | 0.613 |
| 21 | 21 | 0.993 |
| 22 | 22 | 0.295 |
| 23 | 23 | 0.29 |
| 24 | 24 | 0.226 |
| 25 | 25 | 0.793 |
| 26 | 26 | 0.188 |
| 27 | 27 | 0.373 |
| 28 | 28 | 0.414 |
| 29 | 29 | 0.863 |
| 3 | 3 | 0.932 |
| 30 | 30 | 0.0696 |
| 31 | 31 | 0.75 |
| 32 | 32 | 0.451 |
| 33 | 33 | 0.208 |
| 34 | 34 | 0.246 |
| 35 | 35 | 0.249 |
| 36 | 36 | 0.987 |
| 37 | 37 | 0.41 |
| 38 | 38 | 0.323 |
| 39 | 39 | 0.109 |
| 4 | 4 | 0.257 |
| 40 | 40 | 0.00328 |
| 41 | 41 | 0.967 |
| 42 | 42 | 0.694 |
| 43 | 43 | 0.367 |
| 44 | 44 | 0.863 |
| 45 | 45 | 0.227 |
| 46 | 46 | 0.398 |
| 47 | 47 | 0.587 |
| 48 | 48 | 0.391 |
| 49 | 49 | 0.506 |
| 5 | 5 | 0.757 |
| 50 | 50 | 0.224 |
| 51 | 51 | 0.507 |
| 52 | 52 | 0.244 |
| 53 | 53 | 0.668 |
| 54 | 54 | 0.626 |
| 55 | 55 | 0.635 |
| 56 | 56 | 0.264 |
| 57 | 57 | 0.662 |
| 58 | 58 | 0.839 |
| 59 | 59 | 0.0596 |
| 6 | 6 | 0.546 |
| 60 | 60 | 0.298 |
| 61 | 61 | 0.367 |
| 62 | 62 | 0.796 |
| 63 | 63 | 0.176 |
| 64 | 64 | 0.312 |
| 65 | 65 | 0.119 |
| 66 | 66 | 0.128 |
| 67 | 67 | 0.454 |
| 68 | 68 | 0.236 |
| 69 | 69 | 0.017 |
| 7 | 7 | 0.364 |
| 70 | 70 | 0.897 |
| 71 | 71 | 0.495 |
| 72 | 72 | 0.664 |
| 73 | 73 | 0.0591 |
| 74 | 74 | 0.161 |
| 75 | 75 | 0.955 |
| 76 | 76 | 0.178 |
| 77 | 77 | 0.00204 |
| 78 | 78 | 0.719 |
| 79 | 79 | 0.708 |
| 8 | 8 | 0.194 |
| 80 | 80 | 0.752 |
| 81 | 81 | 0.377 |
| 82 | 82 | 0.627 |
| 83 | 83 | 0.717 |
| 84 | 84 | 0.641 |
| 85 | 85 | 0.85 |
| 86 | 86 | 0.813 |
| 87 | 87 | 0.205 |
| 88 | 88 | 0.24 |
| 89 | 89 | 0.131 |
| 9 | 9 | 0.687 |
| 90 | 90 | 0.0279 |
| 91 | 91 | 0.317 |
| 92 | 92 | 0.789 |
| 93 | 93 | 0.822 |
| 94 | 94 | 0.922 |
| 95 | 95 | 0.122 |
| 96 | 96 | 0.933 |
| 97 | 97 | 0.615 |
| 98 | 98 | 0.491 |
| 99 | 99 | 0.00165 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11325
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000012 (human alveolar epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
