FF:11536-120A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004842 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004842 | ||
|accession_numbers=CAGE;DRX008351;DRR009223;DRZ000648;DRZ002033;DRZ011998;DRZ013383 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037016;DRR041382;DRZ007024 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000097 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11536-120A6 | |id=FF:11536-120A6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000097 | ||
|is_obsolete= | |||
|library_id=CNhs11344 | |||
|library_id_phase_based=2:CNhs11344 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11536 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CAGATC.11536 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11536 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CAGATC.11536 | |||
|name=Mesenchymal Stem Cells - bone marrow, donor1 | |name=Mesenchymal Stem Cells - bone marrow, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11344,LSID769,release014,COMPLETED | |profile_hcage=CNhs11344,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10003,,, | |profile_srnaseq=SRhi10003,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.0494623176131017,-0.232700100703899,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.000115214285124732,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.405388070522078,0,0.041530255665933,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0512956252220709,0,0,0,0,0,0,-0.0615677432181466,0,0,0,0.0184834255323876,-0.057574627479439,0,0.0994069197460863,0,0,0.00137156850837984,-0.138477200800895,0,0,0,0.0994069197460863,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.0333390051588586,0.0082555501623214,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC7505 | |rna_catalog_number=SC7505 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120A6 | |rna_tube_id=120A6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10003.CAGATC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.37320145625665e-244!GO:0043226;organelle;1.64840287433034e-202!GO:0043229;intracellular organelle;2.21316637143388e-202!GO:0043231;intracellular membrane-bound organelle;1.34027302505531e-201!GO:0043227;membrane-bound organelle;4.34968495405912e-201!GO:0005737;cytoplasm;2.12069753952719e-189!GO:0044422;organelle part;7.22531268716885e-154!GO:0044446;intracellular organelle part;1.00587860818751e-152!GO:0044444;cytoplasmic part;2.80024867758727e-141!GO:0032991;macromolecular complex;1.12042566916489e-97!GO:0044237;cellular metabolic process;2.17078817627624e-92!GO:0044238;primary metabolic process;3.70170339775877e-91!GO:0030529;ribonucleoprotein complex;6.42983145705535e-91!GO:0005739;mitochondrion;6.66329477446822e-82!GO:0043170;macromolecule metabolic process;3.41388025159243e-81!GO:0005634;nucleus;2.48301572537989e-77!GO:0043233;organelle lumen;3.60495828343086e-75!GO:0031974;membrane-enclosed lumen;3.60495828343086e-75!GO:0044428;nuclear part;5.1402613514398e-70!GO:0005515;protein binding;2.69578372156472e-68!GO:0003723;RNA binding;8.51805921324335e-65!GO:0005840;ribosome;4.23519337934959e-59!GO:0044429;mitochondrial part;1.57152131627517e-54!GO:0031090;organelle membrane;5.80860947555314e-54!GO:0003735;structural constituent of ribosome;1.2372574592833e-52!GO:0006412;translation;2.62028265856378e-51!GO:0009058;biosynthetic process;4.34848227742146e-49!GO:0043234;protein complex;1.11173207831853e-47!GO:0016043;cellular component organization and biogenesis;9.32997206958687e-47!GO:0031967;organelle envelope;1.31297140265755e-45!GO:0006396;RNA processing;1.92227403602971e-45!GO:0031975;envelope;3.41567339826317e-45!GO:0044249;cellular biosynthetic process;6.31376403838331e-45!GO:0019538;protein metabolic process;7.78784017139875e-45!GO:0033279;ribosomal subunit;3.32310641863512e-44!GO:0043283;biopolymer metabolic process;3.88798866818959e-44!GO:0009059;macromolecule biosynthetic process;2.75450495904701e-42!GO:0031981;nuclear lumen;6.2224213811282e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.34332600126149e-41!GO:0010467;gene expression;5.24402188417208e-41!GO:0044260;cellular macromolecule metabolic process;2.07874055180808e-39!GO:0044267;cellular protein metabolic process;1.28834235148003e-38!GO:0015031;protein transport;1.95328294445044e-38!GO:0033036;macromolecule localization;5.91671818871865e-38!GO:0005829;cytosol;3.24552720555146e-37!GO:0043228;non-membrane-bound organelle;4.25989930565819e-37!GO:0043232;intracellular non-membrane-bound organelle;4.25989930565819e-37!GO:0005740;mitochondrial envelope;2.95169387920231e-36!GO:0006996;organelle organization and biogenesis;2.80845632391633e-35!GO:0045184;establishment of protein localization;3.86878699023169e-35!GO:0008104;protein localization;4.25739115452048e-35!GO:0016071;mRNA metabolic process;4.15050987040751e-34!GO:0031966;mitochondrial membrane;1.12777724048007e-33!GO:0006259;DNA metabolic process;6.7166695818078e-33!GO:0046907;intracellular transport;9.31616786384912e-33!GO:0019866;organelle inner membrane;4.24890867894316e-32!GO:0065003;macromolecular complex assembly;7.70022931878471e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.65140464024429e-31!GO:0008380;RNA splicing;3.68936823413581e-31!GO:0005743;mitochondrial inner membrane;1.15637591601565e-30!GO:0006397;mRNA processing;8.31867005698703e-30!GO:0022607;cellular component assembly;9.92921758748049e-29!GO:0006886;intracellular protein transport;2.450375455246e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.36334376395295e-27!GO:0007049;cell cycle;6.57677967169484e-25!GO:0044445;cytosolic part;1.71704399956072e-24!GO:0005654;nucleoplasm;4.8065881987823e-24!GO:0005681;spliceosome;2.54326789923064e-23!GO:0031980;mitochondrial lumen;1.08039040430017e-22!GO:0005759;mitochondrial matrix;1.08039040430017e-22!GO:0015934;large ribosomal subunit;1.10897738033809e-22!GO:0015935;small ribosomal subunit;1.40748547718088e-22!GO:0003676;nucleic acid binding;6.86653698418444e-22!GO:0006119;oxidative phosphorylation;1.0020000553133e-21!GO:0044455;mitochondrial membrane part;1.23093253174791e-21!GO:0000278;mitotic cell cycle;1.25343753288113e-20!GO:0051649;establishment of cellular localization;1.3531561824265e-20!GO:0051641;cellular localization;2.4395704846479e-20!GO:0022402;cell cycle process;7.62672939739128e-20!GO:0044451;nucleoplasm part;7.74079808333989e-20!GO:0005783;endoplasmic reticulum;1.29622598889416e-19!GO:0006457;protein folding;1.68534129235603e-19!GO:0012505;endomembrane system;2.00623613652025e-19!GO:0005730;nucleolus;7.91592743287713e-19!GO:0051186;cofactor metabolic process;1.08532318211931e-18!GO:0000166;nucleotide binding;1.13938756767698e-18!GO:0005746;mitochondrial respiratory chain;3.91851873811812e-18!GO:0048770;pigment granule;1.23829182718024e-17!GO:0042470;melanosome;1.23829182718024e-17!GO:0044432;endoplasmic reticulum part;1.77635884102587e-17!GO:0016462;pyrophosphatase activity;2.96249923910031e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.9584476108827e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.6885746596772e-17!GO:0016874;ligase activity;5.95663828349512e-17!GO:0005761;mitochondrial ribosome;7.69255350511376e-17!GO:0000313;organellar ribosome;7.69255350511376e-17!GO:0005694;chromosome;8.02848147886101e-17!GO:0006974;response to DNA damage stimulus;1.15718621330159e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.97683832616636e-16!GO:0017111;nucleoside-triphosphatase activity;2.37779855682331e-16!GO:0022403;cell cycle phase;2.55012925528444e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.72081876270143e-16!GO:0044427;chromosomal part;2.97346797787403e-16!GO:0016070;RNA metabolic process;5.66426671755841e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.62512632389593e-16!GO:0003954;NADH dehydrogenase activity;7.62512632389593e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.62512632389593e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.06777487309933e-15!GO:0007067;mitosis;2.81800855634696e-15!GO:0000087;M phase of mitotic cell cycle;3.1217891783962e-15!GO:0022618;protein-RNA complex assembly;8.45853746550436e-15!GO:0051276;chromosome organization and biogenesis;9.32088777307548e-15!GO:0006605;protein targeting;2.06028085490384e-14!GO:0006732;coenzyme metabolic process;2.53990991004777e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.56262257825835e-14!GO:0006512;ubiquitin cycle;2.88568156211008e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.27849181776961e-14!GO:0042773;ATP synthesis coupled electron transport;3.27849181776961e-14!GO:0006281;DNA repair;3.69984218774412e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.68428250275875e-14!GO:0045271;respiratory chain complex I;4.68428250275875e-14!GO:0005747;mitochondrial respiratory chain complex I;4.68428250275875e-14!GO:0008134;transcription factor binding;5.33149171786638e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.51522715270379e-14!GO:0044265;cellular macromolecule catabolic process;7.93886553021466e-14!GO:0051082;unfolded protein binding;1.25286610172728e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.32597674056872e-13!GO:0005794;Golgi apparatus;1.7204173506881e-13!GO:0006260;DNA replication;2.05879017816763e-13!GO:0008135;translation factor activity, nucleic acid binding;4.36935385178652e-13!GO:0044248;cellular catabolic process;4.49897762081687e-13!GO:0009719;response to endogenous stimulus;4.67011547063927e-13!GO:0043285;biopolymer catabolic process;6.03842379456021e-13!GO:0042254;ribosome biogenesis and assembly;6.58653162143338e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;7.85856437937646e-13!GO:0000279;M phase;8.27197928978752e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.11587619330665e-12!GO:0000375;RNA splicing, via transesterification reactions;1.11587619330665e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.11587619330665e-12!GO:0017076;purine nucleotide binding;1.35323358526851e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.52236574498951e-12!GO:0032553;ribonucleotide binding;1.57293901999175e-12!GO:0032555;purine ribonucleotide binding;1.57293901999175e-12!GO:0051301;cell division;1.59905578407785e-12!GO:0009057;macromolecule catabolic process;1.6325296373061e-12!GO:0005789;endoplasmic reticulum membrane;2.53234707582117e-12!GO:0006323;DNA packaging;3.55453177852319e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.78138650056997e-12!GO:0019941;modification-dependent protein catabolic process;5.81407529335711e-12!GO:0043632;modification-dependent macromolecule catabolic process;5.81407529335711e-12!GO:0006511;ubiquitin-dependent protein catabolic process;7.22159115206166e-12!GO:0009055;electron carrier activity;8.13343043168729e-12!GO:0044257;cellular protein catabolic process;8.13343043168729e-12!GO:0048193;Golgi vesicle transport;1.06971509537875e-11!GO:0065004;protein-DNA complex assembly;3.23026895452555e-11!GO:0006399;tRNA metabolic process;3.56828626311536e-11!GO:0005524;ATP binding;3.65729504012459e-11!GO:0043412;biopolymer modification;4.30961955871226e-11!GO:0032559;adenyl ribonucleotide binding;7.36213353303009e-11!GO:0005793;ER-Golgi intermediate compartment;7.60207662133398e-11!GO:0030554;adenyl nucleotide binding;8.87350312734459e-11!GO:0005635;nuclear envelope;1.14132679106477e-10!GO:0030163;protein catabolic process;1.44206063340665e-10!GO:0006913;nucleocytoplasmic transport;1.9111465121666e-10!GO:0012501;programmed cell death;2.16140185662078e-10!GO:0000785;chromatin;2.29856603864936e-10!GO:0006333;chromatin assembly or disassembly;2.33408065464001e-10!GO:0003743;translation initiation factor activity;3.20831933259072e-10!GO:0006915;apoptosis;3.69132743794858e-10!GO:0009259;ribonucleotide metabolic process;3.84422050850397e-10!GO:0051169;nuclear transport;4.1812250009418e-10!GO:0051726;regulation of cell cycle;4.41277848365662e-10!GO:0000074;regulation of progression through cell cycle;4.96107798702653e-10!GO:0006163;purine nucleotide metabolic process;5.96072948102945e-10!GO:0016604;nuclear body;6.4303910138427e-10!GO:0031965;nuclear membrane;7.47559036791553e-10!GO:0006334;nucleosome assembly;9.66014812437067e-10!GO:0044453;nuclear membrane part;9.8572974707318e-10!GO:0006464;protein modification process;1.19887111649279e-09!GO:0051188;cofactor biosynthetic process;1.48590823682055e-09!GO:0009150;purine ribonucleotide metabolic process;1.72913605934781e-09!GO:0031497;chromatin assembly;2.69152041968313e-09!GO:0016192;vesicle-mediated transport;2.85147012496919e-09!GO:0003712;transcription cofactor activity;2.89108634657125e-09!GO:0008219;cell death;3.34618220209351e-09!GO:0016265;death;3.34618220209351e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.79593055054732e-09!GO:0006413;translational initiation;3.9032014724769e-09!GO:0006164;purine nucleotide biosynthetic process;4.57431813738205e-09!GO:0006364;rRNA processing;4.69920068474457e-09!GO:0065002;intracellular protein transport across a membrane;5.23866054443688e-09!GO:0009260;ribonucleotide biosynthetic process;6.92938225498156e-09!GO:0006461;protein complex assembly;8.21893549707868e-09!GO:0017038;protein import;8.29421716533847e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.38873686509986e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.00398850280962e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.01824067036169e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.01824067036169e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.01824067036169e-08!GO:0009141;nucleoside triphosphate metabolic process;1.12166050641769e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.29675154952879e-08!GO:0042623;ATPase activity, coupled;1.35362867172085e-08!GO:0009060;aerobic respiration;1.38637374672622e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.39827964855919e-08!GO:0015630;microtubule cytoskeleton;1.39827964855919e-08!GO:0016072;rRNA metabolic process;1.40491129148611e-08!GO:0016491;oxidoreductase activity;1.5317411408866e-08!GO:0008565;protein transporter activity;1.579832030054e-08!GO:0008639;small protein conjugating enzyme activity;2.35244881336213e-08!GO:0007005;mitochondrion organization and biogenesis;2.3788004189258e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.9788594077796e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.9788594077796e-08!GO:0043038;amino acid activation;2.9788594077796e-08!GO:0006418;tRNA aminoacylation for protein translation;2.9788594077796e-08!GO:0043039;tRNA aminoacylation;2.9788594077796e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.25453444512324e-08!GO:0016887;ATPase activity;3.27426240601922e-08!GO:0006446;regulation of translational initiation;3.8028317426196e-08!GO:0005643;nuclear pore;4.16608358363586e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.47158079632717e-08!GO:0043687;post-translational protein modification;4.84378705566768e-08!GO:0004842;ubiquitin-protein ligase activity;4.99811486755902e-08!GO:0045333;cellular respiration;7.02670627571505e-08!GO:0016740;transferase activity;8.13826240436085e-08!GO:0019787;small conjugating protein ligase activity;1.0366718534373e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.41925027260511e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.41925027260511e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.46081422679453e-07!GO:0009056;catabolic process;1.46955533399066e-07!GO:0048475;coated membrane;1.52927718120929e-07!GO:0030117;membrane coat;1.52927718120929e-07!GO:0030120;vesicle coat;1.70526418012327e-07!GO:0030662;coated vesicle membrane;1.70526418012327e-07!GO:0008654;phospholipid biosynthetic process;1.74920666971475e-07!GO:0005788;endoplasmic reticulum lumen;1.82814665335198e-07!GO:0009117;nucleotide metabolic process;1.96502518013308e-07!GO:0016607;nuclear speck;2.07270426990638e-07!GO:0016779;nucleotidyltransferase activity;2.58055728089376e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.79505323261568e-07!GO:0048523;negative regulation of cellular process;2.86347870385949e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.00466368999158e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.00466368999158e-07!GO:0015986;ATP synthesis coupled proton transport;3.25573529114562e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.25573529114562e-07!GO:0006366;transcription from RNA polymerase II promoter;3.6323473439561e-07!GO:0016881;acid-amino acid ligase activity;3.75857877757972e-07!GO:0009108;coenzyme biosynthetic process;4.24533105455017e-07!GO:0051329;interphase of mitotic cell cycle;4.26538782612072e-07!GO:0046034;ATP metabolic process;4.44242663684307e-07!GO:0006099;tricarboxylic acid cycle;4.62185384950962e-07!GO:0046356;acetyl-CoA catabolic process;4.62185384950962e-07!GO:0006091;generation of precursor metabolites and energy;4.63603768980608e-07!GO:0004386;helicase activity;4.77872005990147e-07!GO:0003697;single-stranded DNA binding;4.977799513088e-07!GO:0046930;pore complex;5.11562710226066e-07!GO:0005768;endosome;5.68684280330032e-07!GO:0042981;regulation of apoptosis;6.73703997346766e-07!GO:0050794;regulation of cellular process;6.85080406234354e-07!GO:0051325;interphase;7.33809374963016e-07!GO:0043067;regulation of programmed cell death;8.80408570317905e-07!GO:0016568;chromatin modification;8.95843052520116e-07!GO:0008026;ATP-dependent helicase activity;9.25216577751251e-07!GO:0006084;acetyl-CoA metabolic process;1.04386673273911e-06!GO:0016853;isomerase activity;1.05349124027806e-06!GO:0005762;mitochondrial large ribosomal subunit;1.21814751490747e-06!GO:0000315;organellar large ribosomal subunit;1.21814751490747e-06!GO:0051187;cofactor catabolic process;1.24788735312498e-06!GO:0044431;Golgi apparatus part;1.36912620786709e-06!GO:0050657;nucleic acid transport;1.56168435668281e-06!GO:0051236;establishment of RNA localization;1.56168435668281e-06!GO:0050658;RNA transport;1.56168435668281e-06!GO:0019829;cation-transporting ATPase activity;1.56896887241095e-06!GO:0006403;RNA localization;1.64203319712544e-06!GO:0009109;coenzyme catabolic process;1.84161965124128e-06!GO:0051246;regulation of protein metabolic process;2.18444146794316e-06!GO:0045259;proton-transporting ATP synthase complex;2.48017840589534e-06!GO:0044440;endosomal part;2.50537028058833e-06!GO:0010008;endosome membrane;2.50537028058833e-06!GO:0005813;centrosome;2.53398108607238e-06!GO:0043566;structure-specific DNA binding;2.8345654952618e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.8345654952618e-06!GO:0005770;late endosome;3.89428273240803e-06!GO:0003924;GTPase activity;4.22014589720481e-06!GO:0006754;ATP biosynthetic process;4.30107983609213e-06!GO:0006753;nucleoside phosphate metabolic process;4.30107983609213e-06!GO:0005819;spindle;4.54745383369496e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.75799338346759e-06!GO:0031324;negative regulation of cellular metabolic process;6.32603639895013e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.02818386348298e-06!GO:0048519;negative regulation of biological process;7.30989346709113e-06!GO:0005667;transcription factor complex;7.66138999132367e-06!GO:0051170;nuclear import;7.74313127460694e-06!GO:0005815;microtubule organizing center;8.01273174328576e-06!GO:0006752;group transfer coenzyme metabolic process;8.56567754909188e-06!GO:0045454;cell redox homeostasis;9.14856926444424e-06!GO:0032446;protein modification by small protein conjugation;9.14856926444424e-06!GO:0019843;rRNA binding;9.51483738586046e-06!GO:0046474;glycerophospholipid biosynthetic process;1.03212992107984e-05!GO:0003899;DNA-directed RNA polymerase activity;1.18609591892795e-05!GO:0016567;protein ubiquitination;1.29261892427428e-05!GO:0006606;protein import into nucleus;1.54820313829591e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.81928330782615e-05!GO:0000245;spliceosome assembly;1.82407488739891e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.8287938025552e-05!GO:0008610;lipid biosynthetic process;1.95244056678275e-05!GO:0016563;transcription activator activity;1.97000201375532e-05!GO:0004298;threonine endopeptidase activity;2.06704910021958e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.09632772331776e-05!GO:0016859;cis-trans isomerase activity;2.13234427422418e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.19481253088877e-05!GO:0006916;anti-apoptosis;2.21530016838641e-05!GO:0005773;vacuole;2.72430869184073e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.76729083339581e-05!GO:0000314;organellar small ribosomal subunit;2.8907203880474e-05!GO:0005763;mitochondrial small ribosomal subunit;2.8907203880474e-05!GO:0008361;regulation of cell size;2.95472617676973e-05!GO:0016049;cell growth;2.98101702583098e-05!GO:0016126;sterol biosynthetic process;3.2909259495488e-05!GO:0000786;nucleosome;3.43609552180904e-05!GO:0000139;Golgi membrane;3.57169167681366e-05!GO:0051028;mRNA transport;3.71037452327491e-05!GO:0000775;chromosome, pericentric region;4.27637030829731e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.27730865421227e-05!GO:0005798;Golgi-associated vesicle;4.45013430537279e-05!GO:0006261;DNA-dependent DNA replication;4.45013430537279e-05!GO:0030867;rough endoplasmic reticulum membrane;4.77015154097804e-05!GO:0016564;transcription repressor activity;4.90426633405118e-05!GO:0043069;negative regulation of programmed cell death;5.00054060403837e-05!GO:0030133;transport vesicle;5.09278111529145e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.29459395486855e-05!GO:0009892;negative regulation of metabolic process;5.92172312056474e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.15547326700629e-05!GO:0031252;leading edge;6.29817414252083e-05!GO:0019867;outer membrane;6.33580895988001e-05!GO:0043066;negative regulation of apoptosis;6.33580895988001e-05!GO:0016787;hydrolase activity;6.66564255695572e-05!GO:0019899;enzyme binding;7.04750253848812e-05!GO:0000151;ubiquitin ligase complex;7.35694736832028e-05!GO:0003714;transcription corepressor activity;7.5540868126245e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.55604615677255e-05!GO:0051427;hormone receptor binding;7.69112820173893e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.85653084446836e-05!GO:0031968;organelle outer membrane;7.9430377466604e-05!GO:0043623;cellular protein complex assembly;8.03531351948905e-05!GO:0005905;coated pit;8.78610752533435e-05!GO:0005657;replication fork;9.02182235565427e-05!GO:0006626;protein targeting to mitochondrion;9.68394150756687e-05!GO:0045786;negative regulation of progression through cell cycle;9.76324996199675e-05!GO:0033116;ER-Golgi intermediate compartment membrane;0.000107341740981234!GO:0050789;regulation of biological process;0.000108113765445629!GO:0000323;lytic vacuole;0.000112268670070533!GO:0005764;lysosome;0.000112268670070533!GO:0043681;protein import into mitochondrion;0.000124932114321419!GO:0031988;membrane-bound vesicle;0.000125413227118043!GO:0044262;cellular carbohydrate metabolic process;0.000126170731136646!GO:0001558;regulation of cell growth;0.000127022750726427!GO:0003713;transcription coactivator activity;0.000129379118455335!GO:0006613;cotranslational protein targeting to membrane;0.000131395032394396!GO:0035257;nuclear hormone receptor binding;0.000159488874777868!GO:0006793;phosphorus metabolic process;0.000164164930096429!GO:0006796;phosphate metabolic process;0.000164164930096429!GO:0005741;mitochondrial outer membrane;0.000167587579136641!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000189478297894666!GO:0000075;cell cycle checkpoint;0.000217063879600477!GO:0046467;membrane lipid biosynthetic process;0.000227629252254711!GO:0005048;signal sequence binding;0.000240347526646993!GO:0008033;tRNA processing;0.000244505443273864!GO:0006839;mitochondrial transport;0.000246656885469281!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000257030462652531!GO:0046489;phosphoinositide biosynthetic process;0.000271632479141991!GO:0007051;spindle organization and biogenesis;0.000274147473204987!GO:0003724;RNA helicase activity;0.000282772161462979!GO:0006695;cholesterol biosynthetic process;0.00028583935729742!GO:0031410;cytoplasmic vesicle;0.000286930829310214!GO:0016481;negative regulation of transcription;0.000289611495516018!GO:0008094;DNA-dependent ATPase activity;0.000299805054236842!GO:0031982;vesicle;0.000328552499904999!GO:0008250;oligosaccharyl transferase complex;0.000372885036620805!GO:0043021;ribonucleoprotein binding;0.000388909115909186!GO:0007006;mitochondrial membrane organization and biogenesis;0.000394351995542608!GO:0009165;nucleotide biosynthetic process;0.000396759167596852!GO:0030176;integral to endoplasmic reticulum membrane;0.000451341021837917!GO:0007010;cytoskeleton organization and biogenesis;0.000496365951383583!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000510397593437927!GO:0051789;response to protein stimulus;0.00051102043203503!GO:0006986;response to unfolded protein;0.00051102043203503!GO:0019222;regulation of metabolic process;0.000544915271568199!GO:0005791;rough endoplasmic reticulum;0.000578305826618722!GO:0016741;transferase activity, transferring one-carbon groups;0.000655087706742232!GO:0051168;nuclear export;0.000751731201019307!GO:0008168;methyltransferase activity;0.000759471495272762!GO:0005769;early endosome;0.00079186650076901!GO:0043284;biopolymer biosynthetic process;0.00079186650076901!GO:0031902;late endosome membrane;0.000800615677306952!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000817369761152387!GO:0005525;GTP binding;0.000817369761152387!GO:0005885;Arp2/3 protein complex;0.000824088971104772!GO:0051920;peroxiredoxin activity;0.000826377210197272!GO:0016310;phosphorylation;0.000842091862186689!GO:0018196;peptidyl-asparagine modification;0.00089146009045414!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00089146009045414!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000997964248327812!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00100781562329534!GO:0006414;translational elongation;0.00105940424462134!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00112355089886676!GO:0030118;clathrin coat;0.00119577627078489!GO:0005684;U2-dependent spliceosome;0.00122378090493863!GO:0006082;organic acid metabolic process;0.00123441781084971!GO:0005874;microtubule;0.00126405252266967!GO:0003684;damaged DNA binding;0.00127831871158903!GO:0019752;carboxylic acid metabolic process;0.00129238800117355!GO:0042802;identical protein binding;0.00144960523264266!GO:0044452;nucleolar part;0.00147480674647243!GO:0043488;regulation of mRNA stability;0.00170459941623581!GO:0043487;regulation of RNA stability;0.00170459941623581!GO:0005774;vacuolar membrane;0.00172274462562445!GO:0051087;chaperone binding;0.00181231992325742!GO:0032508;DNA duplex unwinding;0.00191445053633387!GO:0032392;DNA geometric change;0.00191445053633387!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00194954106922667!GO:0008186;RNA-dependent ATPase activity;0.00204471280857831!GO:0031072;heat shock protein binding;0.00205894822062328!GO:0046483;heterocycle metabolic process;0.0021094108703279!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00211480764470395!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00211480764470395!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00211480764470395!GO:0004576;oligosaccharyl transferase activity;0.00211486587161811!GO:0030036;actin cytoskeleton organization and biogenesis;0.00218613669830605!GO:0003682;chromatin binding;0.00227099721453637!GO:0065009;regulation of a molecular function;0.0022996311712701!GO:0000082;G1/S transition of mitotic cell cycle;0.00231788153497997!GO:0006383;transcription from RNA polymerase III promoter;0.00232183903510464!GO:0030132;clathrin coat of coated pit;0.00239395750147635!GO:0016363;nuclear matrix;0.00240215574397963!GO:0048522;positive regulation of cellular process;0.00240215574397963!GO:0030658;transport vesicle membrane;0.00245915241894168!GO:0007088;regulation of mitosis;0.00250327510930094!GO:0006595;polyamine metabolic process;0.00250327510930094!GO:0003678;DNA helicase activity;0.00259756234207168!GO:0030663;COPI coated vesicle membrane;0.00268204915124158!GO:0030126;COPI vesicle coat;0.00268204915124158!GO:0006778;porphyrin metabolic process;0.00268442021954173!GO:0033013;tetrapyrrole metabolic process;0.00268442021954173!GO:0040008;regulation of growth;0.0026939371144123!GO:0006979;response to oxidative stress;0.00273716238640458!GO:0030880;RNA polymerase complex;0.00292915565650366!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00295732040601425!GO:0050662;coenzyme binding;0.00309382793532568!GO:0006650;glycerophospholipid metabolic process;0.0031249084204921!GO:0006268;DNA unwinding during replication;0.00317718897451303!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00323456957423192!GO:0006612;protein targeting to membrane;0.003287128238958!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0033189502102021!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0033189502102021!GO:0006402;mRNA catabolic process;0.00339561460500636!GO:0006506;GPI anchor biosynthetic process;0.003487924842773!GO:0015631;tubulin binding;0.00365842597164821!GO:0042158;lipoprotein biosynthetic process;0.00389593000662594!GO:0032561;guanyl ribonucleotide binding;0.00389593000662594!GO:0019001;guanyl nucleotide binding;0.00389593000662594!GO:0006220;pyrimidine nucleotide metabolic process;0.00396467896210458!GO:0030137;COPI-coated vesicle;0.00398655459073526!GO:0006497;protein amino acid lipidation;0.00400931350714927!GO:0051252;regulation of RNA metabolic process;0.004009430241188!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.004009430241188!GO:0015002;heme-copper terminal oxidase activity;0.004009430241188!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.004009430241188!GO:0004129;cytochrome-c oxidase activity;0.004009430241188!GO:0048471;perinuclear region of cytoplasm;0.00416483892464217!GO:0006740;NADPH regeneration;0.00465768882876347!GO:0006098;pentose-phosphate shunt;0.00465768882876347!GO:0044437;vacuolar part;0.00468290128502722!GO:0030134;ER to Golgi transport vesicle;0.00468887748852601!GO:0004004;ATP-dependent RNA helicase activity;0.00473571284915189!GO:0005765;lysosomal membrane;0.00483282450350444!GO:0006779;porphyrin biosynthetic process;0.00490735646469567!GO:0033014;tetrapyrrole biosynthetic process;0.00490735646469567!GO:0000059;protein import into nucleus, docking;0.00501524064933632!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00516451596658924!GO:0017166;vinculin binding;0.00524881135060798!GO:0006505;GPI anchor metabolic process;0.00544688146610082!GO:0005758;mitochondrial intermembrane space;0.0055128132011527!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00575079763009399!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00578732387869567!GO:0008632;apoptotic program;0.00601743906830136!GO:0007346;regulation of progression through mitotic cell cycle;0.00606762060465615!GO:0030119;AP-type membrane coat adaptor complex;0.00620353966347567!GO:0016272;prefoldin complex;0.00625805058894713!GO:0006310;DNA recombination;0.00639289332576798!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00650422400822525!GO:0006352;transcription initiation;0.00650422400822525!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00662125250114518!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00669549581208446!GO:0000428;DNA-directed RNA polymerase complex;0.00669549581208446!GO:0015992;proton transport;0.00669549581208446!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00677385269138847!GO:0030660;Golgi-associated vesicle membrane;0.00684470449300148!GO:0003729;mRNA binding;0.00692976629694472!GO:0042168;heme metabolic process;0.00697303945592816!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00713408339366683!GO:0006302;double-strand break repair;0.00724257339485378!GO:0045792;negative regulation of cell size;0.00743163959484296!GO:0048487;beta-tubulin binding;0.00743163959484296!GO:0051539;4 iron, 4 sulfur cluster binding;0.00749747102564836!GO:0006818;hydrogen transport;0.00750950291282399!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0075331949088571!GO:0006520;amino acid metabolic process;0.00753910250833852!GO:0040029;regulation of gene expression, epigenetic;0.00768527740153561!GO:0009112;nucleobase metabolic process;0.00773179492186324!GO:0008139;nuclear localization sequence binding;0.00777866005071825!GO:0000910;cytokinesis;0.0077999431758177!GO:0000049;tRNA binding;0.00784958565477045!GO:0004518;nuclease activity;0.00804209619956941!GO:0004527;exonuclease activity;0.00819322752519086!GO:0051540;metal cluster binding;0.00819322752519086!GO:0051536;iron-sulfur cluster binding;0.00819322752519086!GO:0006401;RNA catabolic process;0.00823284717970371!GO:0030308;negative regulation of cell growth;0.00849349351559386!GO:0006118;electron transport;0.00897983679655047!GO:0031970;organelle envelope lumen;0.00910471177599099!GO:0007243;protein kinase cascade;0.00915557369968549!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00920053537839037!GO:0007050;cell cycle arrest;0.00927554371015814!GO:0009116;nucleoside metabolic process;0.00929623756054652!GO:0030127;COPII vesicle coat;0.00983931085257005!GO:0012507;ER to Golgi transport vesicle membrane;0.00983931085257005!GO:0019206;nucleoside kinase activity;0.00987633519748331!GO:0030131;clathrin adaptor complex;0.00988290060854142!GO:0051287;NAD binding;0.00995035248062142!GO:0048037;cofactor binding;0.0100117500775916!GO:0016044;membrane organization and biogenesis;0.0100565633249019!GO:0051052;regulation of DNA metabolic process;0.0102408917919134!GO:0051348;negative regulation of transferase activity;0.0102436340709005!GO:0033673;negative regulation of kinase activity;0.0105441193381728!GO:0006469;negative regulation of protein kinase activity;0.0105441193381728!GO:0008092;cytoskeletal protein binding;0.0105911522048419!GO:0043414;biopolymer methylation;0.0107485281400362!GO:0006405;RNA export from nucleus;0.011081015885226!GO:0031124;mRNA 3'-end processing;0.0114635417434512!GO:0030029;actin filament-based process;0.0114713840163131!GO:0000096;sulfur amino acid metabolic process;0.0116681806715262!GO:0051101;regulation of DNA binding;0.0116681806715262!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0116681806715262!GO:0015399;primary active transmembrane transporter activity;0.0116681806715262!GO:0030125;clathrin vesicle coat;0.0117529550193423!GO:0030665;clathrin coated vesicle membrane;0.0117529550193423!GO:0000209;protein polyubiquitination;0.0119918208763958!GO:0006289;nucleotide-excision repair;0.0120628349292632!GO:0006783;heme biosynthetic process;0.012568231555161!GO:0015036;disulfide oxidoreductase activity;0.0126320169685955!GO:0035258;steroid hormone receptor binding;0.0128121080825663!GO:0006891;intra-Golgi vesicle-mediated transport;0.0128173646676603!GO:0030027;lamellipodium;0.0128549664598631!GO:0016125;sterol metabolic process;0.0129239386233911!GO:0007093;mitotic cell cycle checkpoint;0.0129335712028479!GO:0048500;signal recognition particle;0.0129431073630868!GO:0022890;inorganic cation transmembrane transporter activity;0.0130818769392586!GO:0043433;negative regulation of transcription factor activity;0.0134428736591302!GO:0030145;manganese ion binding;0.0139461220277011!GO:0003711;transcription elongation regulator activity;0.0140782812900834!GO:0006611;protein export from nucleus;0.0141869397813814!GO:0048468;cell development;0.0144523735751907!GO:0051098;regulation of binding;0.0149415658353238!GO:0006007;glucose catabolic process;0.0149415658353238!GO:0005862;muscle thin filament tropomyosin;0.0155941524573657!GO:0032259;methylation;0.0157846272256302!GO:0045892;negative regulation of transcription, DNA-dependent;0.0158656981833405!GO:0000776;kinetochore;0.0160745391741121!GO:0006739;NADP metabolic process;0.0166547920489541!GO:0008312;7S RNA binding;0.0166914966669371!GO:0043065;positive regulation of apoptosis;0.0173194263224891!GO:0019798;procollagen-proline dioxygenase activity;0.0174436713751902!GO:0043596;nuclear replication fork;0.0175384172570291!GO:0030384;phosphoinositide metabolic process;0.017555757393009!GO:0006509;membrane protein ectodomain proteolysis;0.0176683562434849!GO:0033619;membrane protein proteolysis;0.0176683562434849!GO:0005869;dynactin complex;0.0179806507496711!GO:0006733;oxidoreduction coenzyme metabolic process;0.0180329443269163!GO:0031543;peptidyl-proline dioxygenase activity;0.0182212619936033!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0183744938467139!GO:0008652;amino acid biosynthetic process;0.0186361422810302!GO:0000228;nuclear chromosome;0.0189049402367488!GO:0006275;regulation of DNA replication;0.018925788320073!GO:0000287;magnesium ion binding;0.018925788320073!GO:0007021;tubulin folding;0.0190280002623372!GO:0045941;positive regulation of transcription;0.0191496117983945!GO:0008286;insulin receptor signaling pathway;0.0191712684514513!GO:0016860;intramolecular oxidoreductase activity;0.0193206330968267!GO:0030508;thiol-disulfide exchange intermediate activity;0.0193206330968267!GO:0031529;ruffle organization and biogenesis;0.0199606662043434!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.020024615328478!GO:0033559;unsaturated fatty acid metabolic process;0.020170679034445!GO:0006636;unsaturated fatty acid biosynthetic process;0.020170679034445!GO:0031323;regulation of cellular metabolic process;0.0202987456477408!GO:0006790;sulfur metabolic process;0.0203311347412536!GO:0030521;androgen receptor signaling pathway;0.0204438064444559!GO:0009303;rRNA transcription;0.0204438064444559!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0207195814111354!GO:0008629;induction of apoptosis by intracellular signals;0.0209174640474427!GO:0006066;alcohol metabolic process;0.0209174640474427!GO:0043068;positive regulation of programmed cell death;0.0210237897551003!GO:0005832;chaperonin-containing T-complex;0.0212940420197854!GO:0030433;ER-associated protein catabolic process;0.0213809489329659!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0213809489329659!GO:0043022;ribosome binding;0.0215417572382762!GO:0005637;nuclear inner membrane;0.0223219003388103!GO:0000084;S phase of mitotic cell cycle;0.0224326704561003!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0225560233899817!GO:0065007;biological regulation;0.0226163843800429!GO:0003690;double-stranded DNA binding;0.0226713860661975!GO:0006950;response to stress;0.0229055438309924!GO:0004003;ATP-dependent DNA helicase activity;0.0231244883807554!GO:0006730;one-carbon compound metabolic process;0.0245659583286898!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0245659583286898!GO:0010257;NADH dehydrogenase complex assembly;0.0245659583286898!GO:0033108;mitochondrial respiratory chain complex assembly;0.0245659583286898!GO:0007040;lysosome organization and biogenesis;0.0246259662823346!GO:0007264;small GTPase mediated signal transduction;0.0246564307926668!GO:0001726;ruffle;0.0249717887676936!GO:0005996;monosaccharide metabolic process;0.0251707341948841!GO:0008180;signalosome;0.025229327063269!GO:0006643;membrane lipid metabolic process;0.0259336242165724!GO:0003746;translation elongation factor activity;0.0259942531599302!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.026127901771628!GO:0045039;protein import into mitochondrial inner membrane;0.026127901771628!GO:0019318;hexose metabolic process;0.0263531147386291!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0264049705280986!GO:0045047;protein targeting to ER;0.0264049705280986!GO:0008538;proteasome activator activity;0.0267002228262189!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0267111100651411!GO:0006284;base-excision repair;0.0269204724177119!GO:0000792;heterochromatin;0.0272177973846164!GO:0043189;H4/H2A histone acetyltransferase complex;0.027419952398832!GO:0008637;apoptotic mitochondrial changes;0.0274597109671081!GO:0007059;chromosome segregation;0.0276062180701243!GO:0005876;spindle microtubule;0.0278705580389311!GO:0007033;vacuole organization and biogenesis;0.0279133250532244!GO:0000339;RNA cap binding;0.028109377107975!GO:0006338;chromatin remodeling;0.0282001046647743!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.028344662017313!GO:0006644;phospholipid metabolic process;0.0284271034465711!GO:0016408;C-acyltransferase activity;0.0287877239724851!GO:0007052;mitotic spindle organization and biogenesis;0.0288975724047096!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0299647507356555!GO:0003756;protein disulfide isomerase activity;0.0302074969565617!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0302074969565617!GO:0045926;negative regulation of growth;0.0302074969565617!GO:0042393;histone binding;0.0302316147713177!GO:0005881;cytoplasmic microtubule;0.0306518341068729!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0316188026682116!GO:0030659;cytoplasmic vesicle membrane;0.0319576677343859!GO:0045893;positive regulation of transcription, DNA-dependent;0.0322368999112724!GO:0003923;GPI-anchor transamidase activity;0.0324194865757854!GO:0016255;attachment of GPI anchor to protein;0.0324194865757854!GO:0042765;GPI-anchor transamidase complex;0.0324194865757854!GO:0006807;nitrogen compound metabolic process;0.0324194865757854!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0328397234490668!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0328397234490668!GO:0000178;exosome (RNase complex);0.0328594605450379!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0333249015450122!GO:0046966;thyroid hormone receptor binding;0.0333941315846927!GO:0006350;transcription;0.0333941315846927!GO:0035267;NuA4 histone acetyltransferase complex;0.0334979762526072!GO:0009451;RNA modification;0.0335576134430756!GO:0006378;mRNA polyadenylation;0.034018037834891!GO:0044454;nuclear chromosome part;0.0340322561261415!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0340913497580113!GO:0030041;actin filament polymerization;0.0346287442456394!GO:0045936;negative regulation of phosphate metabolic process;0.0349345239694894!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0355139295241814!GO:0006144;purine base metabolic process;0.0356954047083398!GO:0031301;integral to organelle membrane;0.0357956051068476!GO:0050790;regulation of catalytic activity;0.0359594489953408!GO:0035035;histone acetyltransferase binding;0.0359756408534304!GO:0007017;microtubule-based process;0.0362428987900583!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0371145840794083!GO:0046822;regulation of nucleocytoplasmic transport;0.0377231682095114!GO:0031625;ubiquitin protein ligase binding;0.0378159700054264!GO:0031371;ubiquitin conjugating enzyme complex;0.0378159700054264!GO:0016584;nucleosome positioning;0.0378644053959391!GO:0008213;protein amino acid alkylation;0.0380346795722735!GO:0006479;protein amino acid methylation;0.0380346795722735!GO:0030911;TPR domain binding;0.0383773322324539!GO:0031272;regulation of pseudopodium formation;0.0383773322324539!GO:0031269;pseudopodium formation;0.0383773322324539!GO:0031344;regulation of cell projection organization and biogenesis;0.0383773322324539!GO:0031268;pseudopodium organization and biogenesis;0.0383773322324539!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0383773322324539!GO:0031274;positive regulation of pseudopodium formation;0.0383773322324539!GO:0009262;deoxyribonucleotide metabolic process;0.0398057606985753!GO:0009124;nucleoside monophosphate biosynthetic process;0.0402721149351453!GO:0009123;nucleoside monophosphate metabolic process;0.0402721149351453!GO:0000922;spindle pole;0.0405308109483035!GO:0004448;isocitrate dehydrogenase activity;0.0408608408614957!GO:0006458;'de novo' protein folding;0.0417245965765914!GO:0051084;'de novo' posttranslational protein folding;0.0417245965765914!GO:0000123;histone acetyltransferase complex;0.0418972281878968!GO:0009119;ribonucleoside metabolic process;0.0420294663241115!GO:0006596;polyamine biosynthetic process;0.0421587889089195!GO:0032984;macromolecular complex disassembly;0.0422400774552613!GO:0031418;L-ascorbic acid binding;0.0422872999032416!GO:0000030;mannosyltransferase activity;0.042814686481258!GO:0051320;S phase;0.042826983402681!GO:0048144;fibroblast proliferation;0.042826983402681!GO:0048145;regulation of fibroblast proliferation;0.042826983402681!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.042826983402681!GO:0008022;protein C-terminus binding;0.0430684534962341!GO:0006221;pyrimidine nucleotide biosynthetic process;0.044253947755311!GO:0006354;RNA elongation;0.0454187026425123!GO:0007034;vacuolar transport;0.0454615181477083!GO:0048518;positive regulation of biological process;0.0456140268693777!GO:0051128;regulation of cellular component organization and biogenesis;0.0459511771608573!GO:0005680;anaphase-promoting complex;0.0484562173562775!GO:0051775;response to redox state;0.0488664479571969!GO:0006980;redox signal response;0.0488664479571969!GO:0008287;protein serine/threonine phosphatase complex;0.0488664479571969!GO:0009308;amine metabolic process;0.0488664479571969!GO:0046426;negative regulation of JAK-STAT cascade;0.0490306861992114!GO:0046519;sphingoid metabolic process;0.0490441925682359!GO:0046128;purine ribonucleoside metabolic process;0.0492329947325968!GO:0042278;purine nucleoside metabolic process;0.0492329947325968!GO:0043624;cellular protein complex disassembly;0.0498338484723325 | |||
|sample_id=11536 | |sample_id=11536 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=HOX{A5,B5}:1.43077586755;GTF2A1,2:1.37732704542;GFI1:1.14514534438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10846462913;PDX1:1.08831681236;GZF1:1.07760054782;EBF1:1.05793421713;HES1:1.03506954799;ZNF238:1.01923231994;RXR{A,B,G}:1.00228689837;NFY{A,B,C}:0.845706202685;ATF6:0.839967795214;IKZF1:0.81998684714;EN1,2:0.747317659181;GFI1B:0.738027997891;GLI1..3:0.737675358977;E2F1..5:0.679425428186;PBX1:0.676533423938;NFE2L1:0.638827003879;LHX3,4:0.63124901192;PAX8:0.630656299008;NR3C1:0.589710604587;ESR1:0.558496841907;LEF1_TCF7_TCF7L1,2:0.549270274999;POU2F1..3:0.476311943967;KLF4:0.455754076586;ZNF148:0.44126158007;STAT5{A,B}:0.435617050448;TFAP4:0.432047730301;SOX17:0.430409209313;ZIC1..3:0.425335192695;ZNF423:0.423280950605;TFCP2:0.420911078922;NR5A1,2:0.416916832293;SRF:0.41470343856;CDC5L:0.412256665988;NR1H4:0.40597934365;XCPE1{core}:0.399168891631;RXRA_VDR{dimer}:0.386698279063;ZNF143:0.370471020499;HOX{A6,A7,B6,B7}:0.353386875375;TP53:0.349085170671;NKX2-3_NKX2-5:0.337574018173;TEAD1:0.333258217027;ZBTB6:0.330929944517;HBP1_HMGB_SSRP1_UBTF:0.309196296996;RREB1:0.307198751687;TAL1_TCF{3,4,12}:0.300713944981;FOXD3:0.283192386739;TLX1..3_NFIC{dimer}:0.280204649194;PAX5:0.279659260813;NR6A1:0.278329625909;CRX:0.273247302875;NFE2L2:0.271771579658;FOXL1:0.265509566534;MYB:0.259346103085;SOX{8,9,10}:0.248744074811;ESRRA:0.220123514711;HAND1,2:0.217964181596;PPARG:0.206270252735;TBP:0.199499840218;SPZ1:0.197704913473;TOPORS:0.197559490485;BACH2:0.170633623871;HNF4A_NR2F1,2:0.166240537269;NKX2-2,8:0.16492628406;ADNP_IRX_SIX_ZHX:0.161748333122;PRRX1,2:0.154858505201;TFDP1:0.150189412197;RUNX1..3:0.133124107997;ELK1,4_GABP{A,B1}:0.127622749724;POU6F1:0.12756836439;NANOG:0.126618753887;POU3F1..4:0.10804417916;YY1:0.0978594554374;HNF1A:0.0919324423848;HIC1:0.0767387165639;ONECUT1,2:0.0625855662439;FOSL2:0.0467821915744;GTF2I:0.0465524494969;UFEwm:0.0317172591623;FOS_FOS{B,L1}_JUN{B,D}:0.0223707294604;NRF1:0.00489335727312;STAT2,4,6:0.000916297210086;SP1:-0.0035105811441;TFAP2{A,C}:-0.00508615577844;NFE2:-0.0114922466967;RFX1:-0.0124985822702;MZF1:-0.0231671606792;HLF:-0.0325037497519;AIRE:-0.0458074353173;ZNF384:-0.0553232333979;FOXA2:-0.0780484948715;PRDM1:-0.100870266154;AR:-0.112168536692;TBX4,5:-0.117621647839;AHR_ARNT_ARNT2:-0.120457393272;bHLH_family:-0.126412307306;MAFB:-0.130485308031;JUN:-0.131310606314;NFATC1..3:-0.133772279904;REST:-0.141873949084;MTF1:-0.143689103904;MEF2{A,B,C,D}:-0.143985015877;NHLH1,2:-0.144575311017;PAX3,7:-0.154533991311;POU5F1:-0.155957678729;ALX4:-0.165561352058;PATZ1:-0.183775467796;HOX{A4,D4}:-0.193414723245;NANOG{mouse}:-0.21588413632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.233158613188;GATA6:-0.23926524461;HSF1,2:-0.241088205639;CEBPA,B_DDIT3:-0.245537771212;DMAP1_NCOR{1,2}_SMARC:-0.247951013806;MTE{core}:-0.248047980705;MYBL2:-0.24839423211;HOXA9_MEIS1:-0.25444224005;RORA:-0.265396658539;NFIX:-0.285789895283;GATA4:-0.285956940464;FOXM1:-0.30961173635;TFAP2B:-0.31146918055;NKX6-1,2:-0.313708584622;BREu{core}:-0.313895719222;NFKB1_REL_RELA:-0.316958706681;POU1F1:-0.344198838664;OCT4_SOX2{dimer}:-0.344831336824;FOX{I1,J2}:-0.34896679774;PAX1,9:-0.355045091576;MAZ:-0.35711637916;EVI1:-0.358863477432;FOXQ1:-0.371496957117;ETS1,2:-0.372638915556;SOX5:-0.379604454459;ARID5B:-0.393440815067;SOX2:-0.393557739442;T:-0.403474227284;NKX3-2:-0.414474226806;RFX2..5_RFXANK_RFXAP:-0.436193084824;NFIL3:-0.442004230472;CUX2:-0.446586631008;XBP1:-0.456118419;ELF1,2,4:-0.461399895837;DBP:-0.472041111923;SPIB:-0.494535510561;TEF:-0.507947982891;STAT1,3:-0.525126840795;SNAI1..3:-0.559287692971;MED-1{core}:-0.561195788757;SPI1:-0.570686135811;EGR1..3:-0.575725902608;TGIF1:-0.590879789142;LMO2:-0.596420857037;PITX1..3:-0.62507181434;VSX1,2:-0.647454459842;MYFfamily:-0.647780246884;CREB1:-0.661425656773;SMAD1..7,9:-0.705031773465;HMX1:-0.754364390618;FOXP3:-0.754983387583;ZFP161:-0.757100960011;EP300:-0.763530732109;ATF5_CREB3:-0.770276377355;HMGA1,2:-0.773500374322;IKZF2:-0.78942486685;GCM1,2:-0.801633499062;IRF1,2:-0.80790969477;CDX1,2,4:-0.817874564622;FOXP1:-0.824694924454;ATF4:-0.834399418017;IRF7:-0.83800417458;MYOD1:-0.839778582183;NKX2-1,4:-0.859281673917;NKX3-1:-0.863052475066;ZEB1:-0.892423307893;PAX4:-0.903037360362;FOX{F1,F2,J1}:-0.904249243955;SREBF1,2:-0.916320584875;HIF1A:-0.919500453369;ALX1:-0.925193890735;PAX2:-0.959868223151;FOXO1,3,4:-0.962821836618;RBPJ:-0.984472541604;BPTF:-1.01345198082;PAX6:-1.10499138356;FOX{D1,D2}:-1.15300839932;ATF2:-1.16736391184;ZBTB16:-1.19615038696;FOXN1:-1.43543367687;TLX2:-1.58817015611 | |top_motifs=HOX{A5,B5}:1.43077586755;GTF2A1,2:1.37732704542;GFI1:1.14514534438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10846462913;PDX1:1.08831681236;GZF1:1.07760054782;EBF1:1.05793421713;HES1:1.03506954799;ZNF238:1.01923231994;RXR{A,B,G}:1.00228689837;NFY{A,B,C}:0.845706202685;ATF6:0.839967795214;IKZF1:0.81998684714;EN1,2:0.747317659181;GFI1B:0.738027997891;GLI1..3:0.737675358977;E2F1..5:0.679425428186;PBX1:0.676533423938;NFE2L1:0.638827003879;LHX3,4:0.63124901192;PAX8:0.630656299008;NR3C1:0.589710604587;ESR1:0.558496841907;LEF1_TCF7_TCF7L1,2:0.549270274999;POU2F1..3:0.476311943967;KLF4:0.455754076586;ZNF148:0.44126158007;STAT5{A,B}:0.435617050448;TFAP4:0.432047730301;SOX17:0.430409209313;ZIC1..3:0.425335192695;ZNF423:0.423280950605;TFCP2:0.420911078922;NR5A1,2:0.416916832293;SRF:0.41470343856;CDC5L:0.412256665988;NR1H4:0.40597934365;XCPE1{core}:0.399168891631;RXRA_VDR{dimer}:0.386698279063;ZNF143:0.370471020499;HOX{A6,A7,B6,B7}:0.353386875375;TP53:0.349085170671;NKX2-3_NKX2-5:0.337574018173;TEAD1:0.333258217027;ZBTB6:0.330929944517;HBP1_HMGB_SSRP1_UBTF:0.309196296996;RREB1:0.307198751687;TAL1_TCF{3,4,12}:0.300713944981;FOXD3:0.283192386739;TLX1..3_NFIC{dimer}:0.280204649194;PAX5:0.279659260813;NR6A1:0.278329625909;CRX:0.273247302875;NFE2L2:0.271771579658;FOXL1:0.265509566534;MYB:0.259346103085;SOX{8,9,10}:0.248744074811;ESRRA:0.220123514711;HAND1,2:0.217964181596;PPARG:0.206270252735;TBP:0.199499840218;SPZ1:0.197704913473;TOPORS:0.197559490485;BACH2:0.170633623871;HNF4A_NR2F1,2:0.166240537269;NKX2-2,8:0.16492628406;ADNP_IRX_SIX_ZHX:0.161748333122;PRRX1,2:0.154858505201;TFDP1:0.150189412197;RUNX1..3:0.133124107997;ELK1,4_GABP{A,B1}:0.127622749724;POU6F1:0.12756836439;NANOG:0.126618753887;POU3F1..4:0.10804417916;YY1:0.0978594554374;HNF1A:0.0919324423848;HIC1:0.0767387165639;ONECUT1,2:0.0625855662439;FOSL2:0.0467821915744;GTF2I:0.0465524494969;UFEwm:0.0317172591623;FOS_FOS{B,L1}_JUN{B,D}:0.0223707294604;NRF1:0.00489335727312;STAT2,4,6:0.000916297210086;SP1:-0.0035105811441;TFAP2{A,C}:-0.00508615577844;NFE2:-0.0114922466967;RFX1:-0.0124985822702;MZF1:-0.0231671606792;HLF:-0.0325037497519;AIRE:-0.0458074353173;ZNF384:-0.0553232333979;FOXA2:-0.0780484948715;PRDM1:-0.100870266154;AR:-0.112168536692;TBX4,5:-0.117621647839;AHR_ARNT_ARNT2:-0.120457393272;bHLH_family:-0.126412307306;MAFB:-0.130485308031;JUN:-0.131310606314;NFATC1..3:-0.133772279904;REST:-0.141873949084;MTF1:-0.143689103904;MEF2{A,B,C,D}:-0.143985015877;NHLH1,2:-0.144575311017;PAX3,7:-0.154533991311;POU5F1:-0.155957678729;ALX4:-0.165561352058;PATZ1:-0.183775467796;HOX{A4,D4}:-0.193414723245;NANOG{mouse}:-0.21588413632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.233158613188;GATA6:-0.23926524461;HSF1,2:-0.241088205639;CEBPA,B_DDIT3:-0.245537771212;DMAP1_NCOR{1,2}_SMARC:-0.247951013806;MTE{core}:-0.248047980705;MYBL2:-0.24839423211;HOXA9_MEIS1:-0.25444224005;RORA:-0.265396658539;NFIX:-0.285789895283;GATA4:-0.285956940464;FOXM1:-0.30961173635;TFAP2B:-0.31146918055;NKX6-1,2:-0.313708584622;BREu{core}:-0.313895719222;NFKB1_REL_RELA:-0.316958706681;POU1F1:-0.344198838664;OCT4_SOX2{dimer}:-0.344831336824;FOX{I1,J2}:-0.34896679774;PAX1,9:-0.355045091576;MAZ:-0.35711637916;EVI1:-0.358863477432;FOXQ1:-0.371496957117;ETS1,2:-0.372638915556;SOX5:-0.379604454459;ARID5B:-0.393440815067;SOX2:-0.393557739442;T:-0.403474227284;NKX3-2:-0.414474226806;RFX2..5_RFXANK_RFXAP:-0.436193084824;NFIL3:-0.442004230472;CUX2:-0.446586631008;XBP1:-0.456118419;ELF1,2,4:-0.461399895837;DBP:-0.472041111923;SPIB:-0.494535510561;TEF:-0.507947982891;STAT1,3:-0.525126840795;SNAI1..3:-0.559287692971;MED-1{core}:-0.561195788757;SPI1:-0.570686135811;EGR1..3:-0.575725902608;TGIF1:-0.590879789142;LMO2:-0.596420857037;PITX1..3:-0.62507181434;VSX1,2:-0.647454459842;MYFfamily:-0.647780246884;CREB1:-0.661425656773;SMAD1..7,9:-0.705031773465;HMX1:-0.754364390618;FOXP3:-0.754983387583;ZFP161:-0.757100960011;EP300:-0.763530732109;ATF5_CREB3:-0.770276377355;HMGA1,2:-0.773500374322;IKZF2:-0.78942486685;GCM1,2:-0.801633499062;IRF1,2:-0.80790969477;CDX1,2,4:-0.817874564622;FOXP1:-0.824694924454;ATF4:-0.834399418017;IRF7:-0.83800417458;MYOD1:-0.839778582183;NKX2-1,4:-0.859281673917;NKX3-1:-0.863052475066;ZEB1:-0.892423307893;PAX4:-0.903037360362;FOX{F1,F2,J1}:-0.904249243955;SREBF1,2:-0.916320584875;HIF1A:-0.919500453369;ALX1:-0.925193890735;PAX2:-0.959868223151;FOXO1,3,4:-0.962821836618;RBPJ:-0.984472541604;BPTF:-1.01345198082;PAX6:-1.10499138356;FOX{D1,D2}:-1.15300839932;ATF2:-1.16736391184;ZBTB16:-1.19615038696;FOXN1:-1.43543367687;TLX2:-1.58817015611 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11536-120A6;search_select_hide=table117:FF:11536-120A6 | |||
}} | }} | ||
Latest revision as of 18:07, 4 June 2020
| Name: | Mesenchymal Stem Cells - bone marrow, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11344 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11344
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11344
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.506 |
| 10 | 10 | 0.802 |
| 100 | 100 | 0.381 |
| 101 | 101 | 0.664 |
| 102 | 102 | 0.609 |
| 103 | 103 | 0.414 |
| 104 | 104 | 0.393 |
| 105 | 105 | 0.205 |
| 106 | 106 | 0.794 |
| 107 | 107 | 0.0908 |
| 108 | 108 | 0.915 |
| 109 | 109 | 0.0123 |
| 11 | 11 | 0.0251 |
| 110 | 110 | 0.0571 |
| 111 | 111 | 0.602 |
| 112 | 112 | 0.653 |
| 113 | 113 | 0.661 |
| 114 | 114 | 0.767 |
| 115 | 115 | 0.395 |
| 116 | 116 | 0.0321 |
| 117 | 117 | 0.37 |
| 118 | 118 | 0.771 |
| 119 | 119 | 0.815 |
| 12 | 12 | 0.598 |
| 120 | 120 | 0.188 |
| 121 | 121 | 0.327 |
| 122 | 122 | 0.636 |
| 123 | 123 | 0.00605 |
| 124 | 124 | 0.624 |
| 125 | 125 | 0.894 |
| 126 | 126 | 0.585 |
| 127 | 127 | 0.638 |
| 128 | 128 | 0.794 |
| 129 | 129 | 0.856 |
| 13 | 13 | 0.205 |
| 130 | 130 | 0.0074 |
| 131 | 131 | 0.367 |
| 132 | 132 | 0.26 |
| 133 | 133 | 0.403 |
| 134 | 134 | 0.0532 |
| 135 | 135 | 0.917 |
| 136 | 136 | 0.986 |
| 137 | 137 | 0.0594 |
| 138 | 138 | 0.175 |
| 139 | 139 | 0.231 |
| 14 | 14 | 0.926 |
| 140 | 140 | 0.677 |
| 141 | 141 | 0.426 |
| 142 | 142 | 0.203 |
| 143 | 143 | 0.273 |
| 144 | 144 | 0.756 |
| 145 | 145 | 0.446 |
| 146 | 146 | 0.0249 |
| 147 | 147 | 0.281 |
| 148 | 148 | 0.734 |
| 149 | 149 | 0.435 |
| 15 | 15 | 0.913 |
| 150 | 150 | 0.302 |
| 151 | 151 | 0.637 |
| 152 | 152 | 0.314 |
| 153 | 153 | 0.178 |
| 154 | 154 | 0.14 |
| 155 | 155 | 0.65 |
| 156 | 156 | 0.585 |
| 157 | 157 | 0.747 |
| 158 | 158 | 0.132 |
| 159 | 159 | 0.493 |
| 16 | 16 | 0.314 |
| 160 | 160 | 0.0178 |
| 161 | 161 | 0.278 |
| 162 | 162 | 0.444 |
| 163 | 163 | 0.319 |
| 164 | 164 | 0.807 |
| 165 | 165 | 0.645 |
| 166 | 166 | 0.826 |
| 167 | 167 | 0.417 |
| 168 | 168 | 0.737 |
| 169 | 169 | 0.0745 |
| 17 | 17 | 0.459 |
| 18 | 18 | 0.241 |
| 19 | 19 | 0.0353 |
| 2 | 2 | 0.661 |
| 20 | 20 | 0.755 |
| 21 | 21 | 0.337 |
| 22 | 22 | 0.0778 |
| 23 | 23 | 0.92 |
| 24 | 24 | 0.659 |
| 25 | 25 | 0.921 |
| 26 | 26 | 0.0439 |
| 27 | 27 | 0.481 |
| 28 | 28 | 0.0981 |
| 29 | 29 | 0.552 |
| 3 | 3 | 0.353 |
| 30 | 30 | 0.159 |
| 31 | 31 | 0.471 |
| 32 | 32 | 0.00475 |
| 33 | 33 | 0.194 |
| 34 | 34 | 0.264 |
| 35 | 35 | 0.633 |
| 36 | 36 | 0.291 |
| 37 | 37 | 0.147 |
| 38 | 38 | 0.422 |
| 39 | 39 | 0.339 |
| 4 | 4 | 0.402 |
| 40 | 40 | 0.0278 |
| 41 | 41 | 0.544 |
| 42 | 42 | 0.556 |
| 43 | 43 | 0.35 |
| 44 | 44 | 0.357 |
| 45 | 45 | 0.473 |
| 46 | 46 | 0.0817 |
| 47 | 47 | 0.0756 |
| 48 | 48 | 0.0786 |
| 49 | 49 | 0.191 |
| 5 | 5 | 0.896 |
| 50 | 50 | 0.149 |
| 51 | 51 | 0.466 |
| 52 | 52 | 0.786 |
| 53 | 53 | 0.431 |
| 54 | 54 | 0.645 |
| 55 | 55 | 0.806 |
| 56 | 56 | 0.195 |
| 57 | 57 | 0.336 |
| 58 | 58 | 0.327 |
| 59 | 59 | 0.0287 |
| 6 | 6 | 0.625 |
| 60 | 60 | 0.66 |
| 61 | 61 | 0.503 |
| 62 | 62 | 0.421 |
| 63 | 63 | 0.113 |
| 64 | 64 | 0.117 |
| 65 | 65 | 0.0932 |
| 66 | 66 | 0.023 |
| 67 | 67 | 0.823 |
| 68 | 68 | 0.0762 |
| 69 | 69 | 0.0998 |
| 7 | 7 | 0.587 |
| 70 | 70 | 0.438 |
| 71 | 71 | 0.0634 |
| 72 | 72 | 0.625 |
| 73 | 73 | 0.0761 |
| 74 | 74 | 0.864 |
| 75 | 75 | 0.438 |
| 76 | 76 | 0.207 |
| 77 | 77 | 0.0719 |
| 78 | 78 | 0.965 |
| 79 | 79 | 0.858 |
| 8 | 8 | 0.0322 |
| 80 | 80 | 0.726 |
| 81 | 81 | 0.973 |
| 82 | 82 | 0.908 |
| 83 | 83 | 0.56 |
| 84 | 84 | 0.499 |
| 85 | 85 | 0.424 |
| 86 | 86 | 0.703 |
| 87 | 87 | 0.133 |
| 88 | 88 | 0.284 |
| 89 | 89 | 0.0649 |
| 9 | 9 | 0.416 |
| 90 | 90 | 0.126 |
| 91 | 91 | 0.173 |
| 92 | 92 | 0.685 |
| 93 | 93 | 0.61 |
| 94 | 94 | 0.486 |
| 95 | 95 | 0.113 |
| 96 | 96 | 0.556 |
| 97 | 97 | 0.771 |
| 98 | 98 | 0.658 |
| 99 | 99 | 2.84549e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11344
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000097 human mesenchymal stem cell of bone marrow sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
