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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001638,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002066,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003914,UBERON:0003920,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005129
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002588
|accession_numbers=CAGE;DRX008510;DRR009382;DRZ000807;DRZ002192;DRZ012157;DRZ013542
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000177
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.12!129.36!HAND2;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.97!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.31!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.63!186.43!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.42!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.49!43.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.41!46.18!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!1.41!24.81!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.39!23.38!HOXC9;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.65!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.10!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!90.49!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.38!PITX1;;chr7:35293685..35293718,-!p1@TBX20!1.25!16.78!TBX20;;chr4:111544219..111544240,-!p1@PITX2!1.25!16.64!PITX2;;chr12:54378923..54378966,+!p1@HOXC10!1.24!16.49!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!1.21!15.35!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.21!15.06!PITX2;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.20!HOXB6;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.37!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.64!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.14!12.91!HOXD11;;chr5:137804484..137804498,+!p2@EGR1!1.13!50.34!EGR1;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.50!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.12!19.07!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.91!FOXF1;;chr7:27224842..27224872,-!p1@HOXA11!1.11!11.90!HOXA11;;chr6:134210243..134210257,+!p1@TCF21!1.11!11.76!TCF21;;chr4:174451350..174451363,-!p3@HAND2!1.09!11.33!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.08!23.23!C11orf9;;chr12:66218443..66218461,+!p8@HMGA2!1.05!13.19!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.34!GATA6;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.61!PITX1;;chr19:46801639..46801699,+!p1@HIF3A!1.01!9.18!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!1.00!8.89!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.75!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.98!14.63!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.23!OSR1;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.29!NR2F1;;chr2:5832508..5832524,+!p1@SOX11!0.95!7.89!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!0.93!7.46!HOXA11;;chr6:34204672..34204692,+!p1@HMGA1!0.92!856.17!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.92!229.60!HMGA1;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.17!HOXC8;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.17!KDM5D;;chr12:54402790..54402805,+!p2@HOXC8!0.90!7.03!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.90!7.03!HOXC5;;chr12:66218469..66218477,+!p16@HMGA2!0.90!7.03!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.66!GATA6;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.17!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.45!HMGA2;;chr12:54384370..54384382,+!p5@HOXC6!0.84!5.88!HOXC6;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.07!TBX2;;chr11:65686732..65686756,+!p2@DRAP1!0.82!25.10!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.82!6.45!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.45!HOXA3;;chr5:137801160..137801176,+!p1@EGR1!0.80!578.38!EGR1;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.04!TBX3;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.57!SNAI2;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.31!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.80!5.31!HOXA10;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.31!HOXC6;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.19!HOXB2;;chr12:66218923..66218934,+!p14@HMGA2!0.79!5.16!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.31!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.78!5.74!RORB;;chr17:46675558..46675577,-!p2@HOXB6!0.78!5.02!HOXB6;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.02!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.06!IFI16;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.28!SNAI2;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.19!RUNX2;;chr6:155635583..155635644,-!p1@TFB1M!0.75!65.83!TFB1M;;chr19:45971246..45971265,+!p1@FOSB!0.74!93.93!FOSB;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr2:176969179..176969226,+!p2@HOXD11!0.74!4.45!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.03!DRAP1;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.30!HMGA2;;chr4:111544254..111544270,-!p3@PITX2!0.71!4.16!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.02!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.23!NFE2L3;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.45!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.69!4.30!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!51.63!MLLT11;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.07!TOX2;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.74!MECOM;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr15:42749722..42749739,-!p2@ZFP106!0.67!7.17!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.73!FOXL1;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.73!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002588;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.ctss.bed.gz
|id=FF:11541-120B2
|id=FF:11541-120B2
|is_a=EFO:0002091;;FF:0000002;;FF:0000177;;FF:0000210
|is_a=EFO:0002091;;FF:0000177
|is_obsolete=
|library_id=CNhs12597
|library_id_phase_based=2:CNhs12597
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11541
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11541
|name=Smooth Muscle Cells - Umbilical Vein, donor1
|name=Smooth Muscle Cells - Umbilical Vein, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12597,LSID912,release011,COMPLETED
|profile_hcage=CNhs12597,LSID912,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_box=120
|rna_catalog_number=SC8025
|rna_catalog_number=SC8025
Line 56: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 92:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.53828002570372e-267!GO:0043226;organelle;1.01712047855319e-214!GO:0043229;intracellular organelle;1.96467074010521e-214!GO:0043231;intracellular membrane-bound organelle;5.02754641736418e-211!GO:0043227;membrane-bound organelle;1.23439061508745e-210!GO:0005737;cytoplasm;4.7861279543269e-196!GO:0044422;organelle part;2.12456649504739e-162!GO:0044446;intracellular organelle part;6.43280395299155e-161!GO:0044444;cytoplasmic part;1.51870274814527e-137!GO:0032991;macromolecular complex;5.50698623088902e-113!GO:0030529;ribonucleoprotein complex;4.37407718288919e-98!GO:0044237;cellular metabolic process;1.3365780932242e-95!GO:0044238;primary metabolic process;2.82042920150192e-95!GO:0005634;nucleus;2.11195017847742e-89!GO:0043170;macromolecule metabolic process;3.14917355193397e-89!GO:0044428;nuclear part;5.19510317317306e-83!GO:0043233;organelle lumen;2.5617778198522e-81!GO:0031974;membrane-enclosed lumen;2.5617778198522e-81!GO:0005515;protein binding;3.49231770594594e-78!GO:0003723;RNA binding;1.79277973062943e-77!GO:0005739;mitochondrion;6.16698528836374e-70!GO:0005840;ribosome;2.17411711405891e-58!GO:0043234;protein complex;1.1551917026068e-56!GO:0016043;cellular component organization and biogenesis;8.09565073912665e-55!GO:0006412;translation;3.77558632610168e-54!GO:0006396;RNA processing;4.74270903735026e-54!GO:0003735;structural constituent of ribosome;2.01115026126443e-51!GO:0043283;biopolymer metabolic process;3.5084041071415e-50!GO:0031090;organelle membrane;3.84160663956949e-50!GO:0019538;protein metabolic process;6.99032460140475e-49!GO:0031981;nuclear lumen;1.23544345438326e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.59971354135124e-47!GO:0010467;gene expression;5.64049698398648e-47!GO:0015031;protein transport;8.80448481119032e-47!GO:0033036;macromolecule localization;2.02122945149308e-46!GO:0044429;mitochondrial part;4.84323242277876e-46!GO:0009058;biosynthetic process;2.51558802366598e-44!GO:0044260;cellular macromolecule metabolic process;9.88418837879228e-44!GO:0033279;ribosomal subunit;1.0183028588704e-43!GO:0044267;cellular protein metabolic process;2.82442198801459e-43!GO:0043228;non-membrane-bound organelle;3.66849043909626e-43!GO:0043232;intracellular non-membrane-bound organelle;3.66849043909626e-43!GO:0045184;establishment of protein localization;6.78243564744939e-43!GO:0031967;organelle envelope;8.57021132297034e-43!GO:0008104;protein localization;1.06365511839162e-42!GO:0031975;envelope;2.23010026382137e-42!GO:0016071;mRNA metabolic process;2.58488466774307e-42!GO:0009059;macromolecule biosynthetic process;1.28561466910637e-41!GO:0005829;cytosol;8.33304904385575e-41!GO:0044249;cellular biosynthetic process;1.96757265197982e-40!GO:0006996;organelle organization and biogenesis;1.02005316440404e-39!GO:0008380;RNA splicing;1.72371756805918e-39!GO:0065003;macromolecular complex assembly;6.02125918579814e-38!GO:0006397;mRNA processing;1.44713723909448e-37!GO:0006259;DNA metabolic process;1.96567412770719e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.84844537642702e-36!GO:0046907;intracellular transport;8.28048351480475e-36!GO:0022607;cellular component assembly;5.77923596492783e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.37497854527305e-32!GO:0007049;cell cycle;8.19008859739515e-32!GO:0006886;intracellular protein transport;1.24066579831371e-30!GO:0005654;nucleoplasm;3.35190232278389e-30!GO:0005681;spliceosome;3.55155164269529e-29!GO:0005740;mitochondrial envelope;5.14349351612402e-29!GO:0003676;nucleic acid binding;6.95847253548772e-29!GO:0031966;mitochondrial membrane;5.04651863562467e-27!GO:0019866;organelle inner membrane;1.45172158923053e-26!GO:0044445;cytosolic part;6.28613148732687e-26!GO:0005743;mitochondrial inner membrane;1.37732087078662e-24!GO:0000278;mitotic cell cycle;1.98886096037427e-24!GO:0044451;nucleoplasm part;2.94878801580634e-24!GO:0000166;nucleotide binding;4.84238171953509e-24!GO:0022402;cell cycle process;6.01359296495754e-24!GO:0051649;establishment of cellular localization;1.53054086671973e-23!GO:0006457;protein folding;1.53054086671973e-23!GO:0016462;pyrophosphatase activity;1.98087844671409e-23!GO:0051641;cellular localization;2.05095572046971e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.29340584992563e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.73505474391584e-23!GO:0015935;small ribosomal subunit;1.1648088699155e-22!GO:0017111;nucleoside-triphosphatase activity;1.63615609670936e-22!GO:0006119;oxidative phosphorylation;1.73389667096679e-22!GO:0015934;large ribosomal subunit;4.40588239818921e-22!GO:0012505;endomembrane system;7.3359745654566e-22!GO:0022618;protein-RNA complex assembly;1.80777614237299e-21!GO:0005694;chromosome;3.10567166201782e-21!GO:0006974;response to DNA damage stimulus;3.76336490658075e-21!GO:0044455;mitochondrial membrane part;6.17996372590853e-21!GO:0031980;mitochondrial lumen;1.44658681149817e-20!GO:0005759;mitochondrial matrix;1.44658681149817e-20!GO:0016070;RNA metabolic process;4.12042218131203e-20!GO:0048770;pigment granule;1.90956461228543e-19!GO:0042470;melanosome;1.90956461228543e-19!GO:0044427;chromosomal part;2.83244279902115e-19!GO:0005783;endoplasmic reticulum;3.14588124133407e-19!GO:0005730;nucleolus;4.92468995657895e-19!GO:0000087;M phase of mitotic cell cycle;5.0297139828186e-19!GO:0022403;cell cycle phase;7.13463243200921e-19!GO:0007067;mitosis;1.32782762096971e-18!GO:0008135;translation factor activity, nucleic acid binding;4.17605796328853e-18!GO:0051301;cell division;5.26666355108287e-18!GO:0006281;DNA repair;1.29974774125571e-17!GO:0005746;mitochondrial respiratory chain;3.34403406277486e-17!GO:0051276;chromosome organization and biogenesis;6.11503882154079e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.62503070668865e-17!GO:0000502;proteasome complex (sensu Eukaryota);8.86886519992011e-17!GO:0032553;ribonucleotide binding;9.32812539835892e-17!GO:0032555;purine ribonucleotide binding;9.32812539835892e-17!GO:0016874;ligase activity;1.15458830612201e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.43239269946106e-16!GO:0017076;purine nucleotide binding;3.20542151223037e-16!GO:0044432;endoplasmic reticulum part;3.48720972849774e-16!GO:0005761;mitochondrial ribosome;3.72655691859034e-16!GO:0000313;organellar ribosome;3.72655691859034e-16!GO:0006512;ubiquitin cycle;5.79029826110683e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03121892789349e-15!GO:0000279;M phase;1.04164985511185e-15!GO:0044265;cellular macromolecule catabolic process;1.06484989843466e-15!GO:0008134;transcription factor binding;1.35834548181955e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.41045590112532e-15!GO:0042254;ribosome biogenesis and assembly;1.71606578299724e-15!GO:0019941;modification-dependent protein catabolic process;1.89086604754288e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.89086604754288e-15!GO:0009719;response to endogenous stimulus;2.35337347170764e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.35498765803139e-15!GO:0043285;biopolymer catabolic process;2.43111451058839e-15!GO:0005794;Golgi apparatus;2.43332249783996e-15!GO:0051186;cofactor metabolic process;2.44573481955871e-15!GO:0044257;cellular protein catabolic process;3.02916738741639e-15!GO:0006605;protein targeting;5.59688195587326e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.7525452166978e-15!GO:0003954;NADH dehydrogenase activity;5.7525452166978e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.7525452166978e-15!GO:0051082;unfolded protein binding;7.39650149623591e-15!GO:0003743;translation initiation factor activity;1.00102280040145e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.00102280040145e-14!GO:0000375;RNA splicing, via transesterification reactions;1.00102280040145e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.00102280040145e-14!GO:0005635;nuclear envelope;2.03969610005453e-14!GO:0048193;Golgi vesicle transport;2.16541574741974e-14!GO:0006413;translational initiation;3.52624527068076e-14!GO:0009057;macromolecule catabolic process;5.32171690419556e-14!GO:0006260;DNA replication;5.95044751813267e-14!GO:0044248;cellular catabolic process;1.16238677059248e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.16238677059248e-13!GO:0042773;ATP synthesis coupled electron transport;1.16238677059248e-13!GO:0031965;nuclear membrane;1.20401036581863e-13!GO:0005524;ATP binding;1.23047816919231e-13!GO:0044453;nuclear membrane part;1.50339054005466e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.50852478284474e-13!GO:0030163;protein catabolic process;1.50852478284474e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.76748483443258e-13!GO:0045271;respiratory chain complex I;2.76748483443258e-13!GO:0005747;mitochondrial respiratory chain complex I;2.76748483443258e-13!GO:0032559;adenyl ribonucleotide binding;3.29404667758663e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.66189805464379e-13!GO:0006323;DNA packaging;5.73672719841858e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.63150144338537e-13!GO:0030554;adenyl nucleotide binding;1.45384064689235e-12!GO:0065004;protein-DNA complex assembly;1.61092871036981e-12!GO:0016604;nuclear body;2.20142105760747e-12!GO:0000074;regulation of progression through cell cycle;3.2882379671858e-12!GO:0016192;vesicle-mediated transport;3.88176991443318e-12!GO:0006732;coenzyme metabolic process;3.9493621819574e-12!GO:0051726;regulation of cell cycle;4.69383073853111e-12!GO:0005793;ER-Golgi intermediate compartment;8.89376607364346e-12!GO:0006333;chromatin assembly or disassembly;1.57477817396745e-11!GO:0043412;biopolymer modification;1.58520922143898e-11!GO:0006446;regulation of translational initiation;2.01378267795834e-11!GO:0000785;chromatin;2.21348612620316e-11!GO:0042623;ATPase activity, coupled;2.30636751829206e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.328741764843e-11!GO:0009259;ribonucleotide metabolic process;2.74120397820453e-11!GO:0016887;ATPase activity;3.61489276996493e-11!GO:0005643;nuclear pore;5.52919221191402e-11!GO:0006163;purine nucleotide metabolic process;5.94418077172842e-11!GO:0004386;helicase activity;6.32376617810901e-11!GO:0005789;endoplasmic reticulum membrane;8.14823788914348e-11!GO:0015630;microtubule cytoskeleton;1.20175887339945e-10!GO:0006913;nucleocytoplasmic transport;1.30051421147702e-10!GO:0009150;purine ribonucleotide metabolic process;2.67008285984556e-10!GO:0006399;tRNA metabolic process;2.70250359160737e-10!GO:0051169;nuclear transport;3.34118040361013e-10!GO:0006164;purine nucleotide biosynthetic process;3.37291805883856e-10!GO:0009055;electron carrier activity;3.45600440111601e-10!GO:0065002;intracellular protein transport across a membrane;3.4737515916941e-10!GO:0006364;rRNA processing;3.59350086592376e-10!GO:0008565;protein transporter activity;4.04739173538057e-10!GO:0016607;nuclear speck;4.16070890032298e-10!GO:0009260;ribonucleotide biosynthetic process;4.5344422202725e-10!GO:0006464;protein modification process;4.95249268309507e-10!GO:0008026;ATP-dependent helicase activity;6.48433844901278e-10!GO:0006334;nucleosome assembly;7.58638092434987e-10!GO:0003712;transcription cofactor activity;7.94219606505389e-10!GO:0016072;rRNA metabolic process;9.32323172649904e-10!GO:0050657;nucleic acid transport;9.82426073305547e-10!GO:0051236;establishment of RNA localization;9.82426073305547e-10!GO:0050658;RNA transport;9.82426073305547e-10!GO:0006403;RNA localization;1.23168958082933e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.27403034262795e-09!GO:0009060;aerobic respiration;1.41970743677522e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.43949727609198e-09!GO:0048523;negative regulation of cellular process;2.32336078848213e-09!GO:0003924;GTPase activity;2.51901343132037e-09!GO:0006461;protein complex assembly;2.51901343132037e-09!GO:0006366;transcription from RNA polymerase II promoter;2.95342867228306e-09!GO:0012501;programmed cell death;3.34128394191184e-09!GO:0046930;pore complex;3.62728705445033e-09!GO:0050794;regulation of cellular process;3.80561989192209e-09!GO:0009141;nucleoside triphosphate metabolic process;4.19099424989862e-09!GO:0031497;chromatin assembly;4.58199209048319e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.68612680888774e-09!GO:0008639;small protein conjugating enzyme activity;5.07847045881991e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.24216978619534e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.29067776191954e-09!GO:0045333;cellular respiration;6.61522967067604e-09!GO:0006915;apoptosis;8.27650057482357e-09!GO:0004842;ubiquitin-protein ligase activity;9.0062269271415e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.18590099691321e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.18590099691321e-09!GO:0030532;small nuclear ribonucleoprotein complex;9.68645082682577e-09!GO:0043687;post-translational protein modification;1.4626228682301e-08!GO:0019787;small conjugating protein ligase activity;1.59612261544188e-08!GO:0043566;structure-specific DNA binding;1.61920090964966e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.6800532051554e-08!GO:0003697;single-stranded DNA binding;1.80233392299533e-08!GO:0017038;protein import;1.95713375957893e-08!GO:0005819;spindle;1.98100439384466e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.20242609244138e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.21758894939797e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.21758894939797e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.21758894939797e-08!GO:0043038;amino acid activation;2.93543696286465e-08!GO:0006418;tRNA aminoacylation for protein translation;2.93543696286465e-08!GO:0043039;tRNA aminoacylation;2.93543696286465e-08!GO:0015986;ATP synthesis coupled proton transport;3.16490668814784e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.16490668814784e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.43923028405458e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.43923028405458e-08!GO:0006099;tricarboxylic acid cycle;4.20564957300925e-08!GO:0046356;acetyl-CoA catabolic process;4.20564957300925e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.61343201979507e-08!GO:0008219;cell death;5.05838079479104e-08!GO:0016265;death;5.05838079479104e-08!GO:0051028;mRNA transport;5.85928486962441e-08!GO:0005788;endoplasmic reticulum lumen;6.43851749970524e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.85681720966279e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.85681720966279e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.33192419890027e-08!GO:0046034;ATP metabolic process;7.96389189667085e-08!GO:0009056;catabolic process;1.0453924428217e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.16273162230648e-07!GO:0006084;acetyl-CoA metabolic process;1.20015084561715e-07!GO:0019829;cation-transporting ATPase activity;1.38814780527954e-07!GO:0030120;vesicle coat;1.53439098392429e-07!GO:0030662;coated vesicle membrane;1.53439098392429e-07!GO:0016859;cis-trans isomerase activity;1.61531943631635e-07!GO:0009109;coenzyme catabolic process;1.62065505680296e-07!GO:0048519;negative regulation of biological process;1.87307895807607e-07!GO:0016853;isomerase activity;1.94156490314872e-07!GO:0051188;cofactor biosynthetic process;1.94156490314872e-07!GO:0051187;cofactor catabolic process;1.96380390556585e-07!GO:0005813;centrosome;2.09478215147917e-07!GO:0048475;coated membrane;2.20743296165822e-07!GO:0030117;membrane coat;2.20743296165822e-07!GO:0005667;transcription factor complex;2.55915629984426e-07!GO:0016881;acid-amino acid ligase activity;2.62033103565229e-07!GO:0009117;nucleotide metabolic process;2.97352317235216e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.2777887293728e-07!GO:0051246;regulation of protein metabolic process;4.46994122982124e-07!GO:0000775;chromosome, pericentric region;4.66221667861777e-07!GO:0007005;mitochondrion organization and biogenesis;4.88685291210178e-07!GO:0051329;interphase of mitotic cell cycle;5.01560828737586e-07!GO:0005815;microtubule organizing center;5.21459258470591e-07!GO:0006754;ATP biosynthetic process;5.41716892426653e-07!GO:0006753;nucleoside phosphate metabolic process;5.41716892426653e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.44235753586317e-07!GO:0000245;spliceosome assembly;8.49929217407137e-07!GO:0016568;chromatin modification;8.88314884292285e-07!GO:0005768;endosome;9.03320686828465e-07!GO:0044431;Golgi apparatus part;1.00259877178844e-06!GO:0032446;protein modification by small protein conjugation;1.09558146852428e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.2107632363623e-06!GO:0007051;spindle organization and biogenesis;1.30529691721771e-06!GO:0016779;nucleotidyltransferase activity;1.31258407934439e-06!GO:0045259;proton-transporting ATP synthase complex;1.31258407934439e-06!GO:0016740;transferase activity;1.54897932593872e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.98803541406468e-06!GO:0016567;protein ubiquitination;2.02635453089812e-06!GO:0051325;interphase;2.10405424114125e-06!GO:0006613;cotranslational protein targeting to membrane;2.28365133122575e-06!GO:0043623;cellular protein complex assembly;2.29717215313446e-06!GO:0005525;GTP binding;2.33376243461852e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.35094578544613e-06!GO:0031324;negative regulation of cellular metabolic process;2.79905494739386e-06!GO:0050789;regulation of biological process;3.17324616677622e-06!GO:0006261;DNA-dependent DNA replication;3.58258628204939e-06!GO:0000075;cell cycle checkpoint;4.23014839719373e-06!GO:0043069;negative regulation of programmed cell death;4.23014839719373e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.39840105425882e-06!GO:0016787;hydrolase activity;4.4601656713816e-06!GO:0031988;membrane-bound vesicle;4.4601656713816e-06!GO:0006752;group transfer coenzyme metabolic process;4.9339045197263e-06!GO:0016563;transcription activator activity;5.0683361055446e-06!GO:0043067;regulation of programmed cell death;5.21664189381207e-06!GO:0000151;ubiquitin ligase complex;5.32901923284441e-06!GO:0051170;nuclear import;5.94424891259165e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.98710358940243e-06!GO:0009108;coenzyme biosynthetic process;6.55012593290903e-06!GO:0006916;anti-apoptosis;6.67388576413785e-06!GO:0003724;RNA helicase activity;6.97199324221221e-06!GO:0042981;regulation of apoptosis;7.44938252880693e-06!GO:0005762;mitochondrial large ribosomal subunit;7.90173708166084e-06!GO:0000315;organellar large ribosomal subunit;7.90173708166084e-06!GO:0043066;negative regulation of apoptosis;8.73454925606525e-06!GO:0016491;oxidoreductase activity;9.81328941700322e-06!GO:0000786;nucleosome;9.91497883123262e-06!GO:0031252;leading edge;1.07632865739078e-05!GO:0005657;replication fork;1.1088982601993e-05!GO:0005770;late endosome;1.11602178507191e-05!GO:0006606;protein import into nucleus;1.33398748105231e-05!GO:0007010;cytoskeleton organization and biogenesis;1.44625876970235e-05!GO:0004298;threonine endopeptidase activity;1.48519266716415e-05!GO:0008654;phospholipid biosynthetic process;1.55364417426832e-05!GO:0005798;Golgi-associated vesicle;1.59765672841724e-05!GO:0045786;negative regulation of progression through cell cycle;1.6806661366472e-05!GO:0003713;transcription coactivator activity;1.79860689038138e-05!GO:0032561;guanyl ribonucleotide binding;1.79976274488848e-05!GO:0019001;guanyl nucleotide binding;1.79976274488848e-05!GO:0009892;negative regulation of metabolic process;1.90047682413937e-05!GO:0003899;DNA-directed RNA polymerase activity;2.10772282325019e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.24788269709353e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.39159052750568e-05!GO:0043021;ribonucleoprotein binding;2.53811375722286e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.53811375722286e-05!GO:0031982;vesicle;2.6361239626345e-05!GO:0000139;Golgi membrane;2.79340107239012e-05!GO:0031410;cytoplasmic vesicle;2.95193967015863e-05!GO:0008094;DNA-dependent ATPase activity;2.97280445587591e-05!GO:0045454;cell redox homeostasis;3.42129351767072e-05!GO:0030867;rough endoplasmic reticulum membrane;3.76040634990488e-05!GO:0000314;organellar small ribosomal subunit;3.85984461743875e-05!GO:0005763;mitochondrial small ribosomal subunit;3.85984461743875e-05!GO:0019843;rRNA binding;3.88292663469118e-05!GO:0016564;transcription repressor activity;3.89057960565248e-05!GO:0016363;nuclear matrix;3.95663294901003e-05!GO:0019222;regulation of metabolic process;4.46434020361277e-05!GO:0044440;endosomal part;4.95262371307852e-05!GO:0010008;endosome membrane;4.95262371307852e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.23232799585553e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.80228291478347e-05!GO:0003714;transcription corepressor activity;6.60082802069745e-05!GO:0016126;sterol biosynthetic process;7.02566966134702e-05!GO:0006612;protein targeting to membrane;7.28418166696798e-05!GO:0051427;hormone receptor binding;7.38219936757561e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.60738761117101e-05!GO:0006302;double-strand break repair;9.29246146315619e-05!GO:0000776;kinetochore;9.72525224650607e-05!GO:0051789;response to protein stimulus;0.00010041896075972!GO:0006986;response to unfolded protein;0.00010041896075972!GO:0006793;phosphorus metabolic process;0.000101386606144882!GO:0006796;phosphate metabolic process;0.000101386606144882!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000102073873276111!GO:0005769;early endosome;0.000105259834871972!GO:0003690;double-stranded DNA binding;0.000107198513073381!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000123185018295833!GO:0016310;phosphorylation;0.00015142172506581!GO:0035257;nuclear hormone receptor binding;0.0001546861816527!GO:0031968;organelle outer membrane;0.000155631904922184!GO:0030133;transport vesicle;0.00017798172532056!GO:0005048;signal sequence binding;0.000179171950852713!GO:0008186;RNA-dependent ATPase activity;0.00019129250357926!GO:0016481;negative regulation of transcription;0.000194225165414448!GO:0006310;DNA recombination;0.000200683102376243!GO:0019867;outer membrane;0.000203430797981783!GO:0006091;generation of precursor metabolites and energy;0.000231014918798654!GO:0008361;regulation of cell size;0.000239785231979929!GO:0005885;Arp2/3 protein complex;0.000252355358868908!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000284060053985749!GO:0033116;ER-Golgi intermediate compartment membrane;0.000285108412961808!GO:0005791;rough endoplasmic reticulum;0.000288959347203542!GO:0030036;actin cytoskeleton organization and biogenesis;0.000308512637819546!GO:0042802;identical protein binding;0.000342720411183111!GO:0051168;nuclear export;0.000347387252002967!GO:0016049;cell growth;0.000357967051519461!GO:0006626;protein targeting to mitochondrion;0.000357967051519461!GO:0008250;oligosaccharyl transferase complex;0.000357967051519461!GO:0009165;nucleotide biosynthetic process;0.000358427078665968!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000368989589372151!GO:0030663;COPI coated vesicle membrane;0.000384621294903123!GO:0030126;COPI vesicle coat;0.000384621294903123!GO:0043681;protein import into mitochondrion;0.000414900555766623!GO:0003729;mRNA binding;0.000430091199460103!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000441115850449578!GO:0007093;mitotic cell cycle checkpoint;0.0004442550818736!GO:0007088;regulation of mitosis;0.000450206607525151!GO:0007052;mitotic spindle organization and biogenesis;0.000450206607525151!GO:0005874;microtubule;0.000460170818993552!GO:0031072;heat shock protein binding;0.000461814719031689!GO:0019899;enzyme binding;0.000461814719031689!GO:0004004;ATP-dependent RNA helicase activity;0.000507732724824796!GO:0004576;oligosaccharyl transferase activity;0.000509556884857492!GO:0003682;chromatin binding;0.000510905770859153!GO:0003684;damaged DNA binding;0.000533156712262823!GO:0044452;nucleolar part;0.000546997085217101!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000568923923895898!GO:0051252;regulation of RNA metabolic process;0.000582677108999421!GO:0006695;cholesterol biosynthetic process;0.000584747326408599!GO:0006383;transcription from RNA polymerase III promoter;0.000616340979346772!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00061691127921499!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000631230817967484!GO:0005905;coated pit;0.000635689423737689!GO:0051052;regulation of DNA metabolic process;0.000654140623851205!GO:0006891;intra-Golgi vesicle-mediated transport;0.000674159486357751!GO:0007059;chromosome segregation;0.000675413291127669!GO:0001558;regulation of cell growth;0.000677867381813228!GO:0018196;peptidyl-asparagine modification;0.0006970843536361!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0006970843536361!GO:0046474;glycerophospholipid biosynthetic process;0.000723031877278064!GO:0048500;signal recognition particle;0.000745052757144774!GO:0000059;protein import into nucleus, docking;0.000751096930283261!GO:0051920;peroxiredoxin activity;0.00077941833872011!GO:0005741;mitochondrial outer membrane;0.000780737142668162!GO:0006414;translational elongation;0.000894864449709144!GO:0005773;vacuole;0.000950119404256247!GO:0030137;COPI-coated vesicle;0.00097013969896849!GO:0000082;G1/S transition of mitotic cell cycle;0.000986714588119892!GO:0003678;DNA helicase activity;0.00105495623461639!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00115769869947272!GO:0008047;enzyme activator activity;0.00119300571159251!GO:0008180;signalosome;0.00126271084856925!GO:0007050;cell cycle arrest;0.00126305070945882!GO:0006352;transcription initiation;0.00130733132703561!GO:0008312;7S RNA binding;0.00133194352960365!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00134156617425121!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00134156617425121!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00134156617425121!GO:0051087;chaperone binding;0.00138634739305857!GO:0008033;tRNA processing;0.00140894102564643!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00144223609802463!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00156868358419437!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00156973699492865!GO:0048471;perinuclear region of cytoplasm;0.00168458028857334!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00175767959535058!GO:0045047;protein targeting to ER;0.00175767959535058!GO:0015631;tubulin binding;0.00181781745124356!GO:0030029;actin filament-based process;0.00193574032067238!GO:0005684;U2-dependent spliceosome;0.001964031145433!GO:0016251;general RNA polymerase II transcription factor activity;0.00209875271502147!GO:0006839;mitochondrial transport;0.00209875271502147!GO:0006402;mRNA catabolic process;0.00211520457647273!GO:0043488;regulation of mRNA stability;0.00220801069114577!GO:0043487;regulation of RNA stability;0.00220801069114577!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00222670129576467!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00230661422658426!GO:0030027;lamellipodium;0.0023827798621037!GO:0005876;spindle microtubule;0.00238718535067974!GO:0008168;methyltransferase activity;0.00238972524630144!GO:0030176;integral to endoplasmic reticulum membrane;0.00238972524630144!GO:0016741;transferase activity, transferring one-carbon groups;0.00239538627718124!GO:0065009;regulation of a molecular function;0.0024716570475369!GO:0030880;RNA polymerase complex;0.0024716570475369!GO:0043284;biopolymer biosynthetic process;0.00255159929253659!GO:0048522;positive regulation of cellular process;0.00255159929253659!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00267009241102878!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00267009241102878!GO:0007006;mitochondrial membrane organization and biogenesis;0.00285077178307222!GO:0000323;lytic vacuole;0.00285081781852762!GO:0005764;lysosome;0.00285081781852762!GO:0030521;androgen receptor signaling pathway;0.00291563852236571!GO:0030134;ER to Golgi transport vesicle;0.00312887693907102!GO:0008610;lipid biosynthetic process;0.00333784357453795!GO:0035258;steroid hormone receptor binding;0.00333784357453795!GO:0009112;nucleobase metabolic process;0.00336473692149262!GO:0003711;transcription elongation regulator activity;0.00336473692149262!GO:0065007;biological regulation;0.00339965666662878!GO:0046489;phosphoinositide biosynthetic process;0.00340679532557512!GO:0031323;regulation of cellular metabolic process;0.0034797863290255!GO:0000910;cytokinesis;0.00354254310743821!GO:0046467;membrane lipid biosynthetic process;0.00392683875171137!GO:0051287;NAD binding;0.00428139022949119!GO:0007017;microtubule-based process;0.00430202368070302!GO:0007243;protein kinase cascade;0.00443735429723783!GO:0006401;RNA catabolic process;0.00455435180315177!GO:0031124;mRNA 3'-end processing;0.0045828885213689!GO:0030658;transport vesicle membrane;0.00461584704286774!GO:0030127;COPII vesicle coat;0.00461584704286774!GO:0012507;ER to Golgi transport vesicle membrane;0.00461584704286774!GO:0046483;heterocycle metabolic process;0.00474749319881853!GO:0045045;secretory pathway;0.00480115037737867!GO:0006950;response to stress;0.00480115037737867!GO:0005096;GTPase activator activity;0.00481320168600323!GO:0030659;cytoplasmic vesicle membrane;0.00502991525718486!GO:0008139;nuclear localization sequence binding;0.00504162116631997!GO:0004527;exonuclease activity;0.00516267409416161!GO:0006289;nucleotide-excision repair;0.00519541716772714!GO:0008092;cytoskeletal protein binding;0.00539250410406151!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00539250410406151!GO:0000428;DNA-directed RNA polymerase complex;0.00539250410406151!GO:0048487;beta-tubulin binding;0.00576657487020987!GO:0015992;proton transport;0.00581898105976885!GO:0006275;regulation of DNA replication;0.00587418088309335!GO:0000049;tRNA binding;0.0059289576619825!GO:0032984;macromolecular complex disassembly;0.00605406002985933!GO:0017166;vinculin binding;0.00611730845280887!GO:0005637;nuclear inner membrane;0.00620277006369136!GO:0008022;protein C-terminus binding;0.00630672124171604!GO:0000922;spindle pole;0.0064825311446802!GO:0001726;ruffle;0.00655429552703143!GO:0016272;prefoldin complex;0.00655429552703143!GO:0005869;dynactin complex;0.0067078684332225!GO:0030118;clathrin coat;0.006727381814684!GO:0006818;hydrogen transport;0.006727381814684!GO:0006220;pyrimidine nucleotide metabolic process;0.006727381814684!GO:0000339;RNA cap binding;0.00680522008459909!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0068658748131552!GO:0015002;heme-copper terminal oxidase activity;0.0068658748131552!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0068658748131552!GO:0004129;cytochrome-c oxidase activity;0.0068658748131552!GO:0045892;negative regulation of transcription, DNA-dependent;0.00688363289627874!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.007194232519019!GO:0015399;primary active transmembrane transporter activity;0.007194232519019!GO:0044262;cellular carbohydrate metabolic process;0.00762378981416763!GO:0006350;transcription;0.00764664588585995!GO:0006595;polyamine metabolic process;0.00767819854823796!GO:0043022;ribosome binding;0.00819864283457559!GO:0003746;translation elongation factor activity;0.008198839492653!GO:0006520;amino acid metabolic process;0.00865334926817583!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00867085359242102!GO:0043624;cellular protein complex disassembly;0.00867085359242102!GO:0032508;DNA duplex unwinding;0.00867085359242102!GO:0032392;DNA geometric change;0.00867085359242102!GO:0051128;regulation of cellular component organization and biogenesis;0.00894630219976024!GO:0005669;transcription factor TFIID complex;0.00922247238296515!GO:0005862;muscle thin filament tropomyosin;0.00925184676856812!GO:0033673;negative regulation of kinase activity;0.00930847977838571!GO:0006469;negative regulation of protein kinase activity;0.00930847977838571!GO:0004003;ATP-dependent DNA helicase activity;0.00938032342100341!GO:0007021;tubulin folding;0.00939955570786728!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00984570380159737!GO:0005832;chaperonin-containing T-complex;0.00985859440996406!GO:0009116;nucleoside metabolic process;0.0100499489287463!GO:0030660;Golgi-associated vesicle membrane;0.0100849504381222!GO:0030132;clathrin coat of coated pit;0.0107317109801312!GO:0051539;4 iron, 4 sulfur cluster binding;0.0107317109801312!GO:0044433;cytoplasmic vesicle part;0.0108114361650568!GO:0006144;purine base metabolic process;0.0113399732486626!GO:0031901;early endosome membrane;0.0113475481239826!GO:0050662;coenzyme binding;0.0116010477515952!GO:0016197;endosome transport;0.0116097644255201!GO:0043241;protein complex disassembly;0.0118623859086963!GO:0006405;RNA export from nucleus;0.0118650745400649!GO:0006268;DNA unwinding during replication;0.0118983980233737!GO:0031902;late endosome membrane;0.0119108648068936!GO:0004177;aminopeptidase activity;0.0119192570651322!GO:0016408;C-acyltransferase activity;0.0121386908144883!GO:0031123;RNA 3'-end processing;0.012406339839163!GO:0051348;negative regulation of transferase activity;0.0124227234373007!GO:0019752;carboxylic acid metabolic process;0.0127552682578572!GO:0032200;telomere organization and biogenesis;0.0128903976624783!GO:0000723;telomere maintenance;0.0128903976624783!GO:0031970;organelle envelope lumen;0.0128922187668651!GO:0006082;organic acid metabolic process;0.0131394709609262!GO:0007264;small GTPase mediated signal transduction;0.0131446198212053!GO:0043596;nuclear replication fork;0.0134004044993373!GO:0003702;RNA polymerase II transcription factor activity;0.0135404357436994!GO:0000209;protein polyubiquitination;0.0139667405562892!GO:0016584;nucleosome positioning;0.0140163982422794!GO:0006740;NADPH regeneration;0.0140163982422794!GO:0006098;pentose-phosphate shunt;0.0140163982422794!GO:0006611;protein export from nucleus;0.0144025958015821!GO:0004518;nuclease activity;0.0147356182837311!GO:0000228;nuclear chromosome;0.0147699992894188!GO:0006509;membrane protein ectodomain proteolysis;0.0148043188870568!GO:0033619;membrane protein proteolysis;0.0148043188870568!GO:0006338;chromatin remodeling;0.0148686826463358!GO:0050681;androgen receptor binding;0.0149888408568353!GO:0005758;mitochondrial intermembrane space;0.01563126452986!GO:0022890;inorganic cation transmembrane transporter activity;0.0159747968459365!GO:0006378;mRNA polyadenylation;0.0162093216570549!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0163966647129774!GO:0009303;rRNA transcription;0.017016277832653!GO:0004674;protein serine/threonine kinase activity;0.0175372476382461!GO:0006497;protein amino acid lipidation;0.0177789799412006!GO:0031625;ubiquitin protein ligase binding;0.0181550515529164!GO:0030496;midbody;0.0189439851060746!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0189439851060746!GO:0012506;vesicle membrane;0.0193584521870822!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0194642932890132!GO:0006376;mRNA splice site selection;0.019484935011399!GO:0000389;nuclear mRNA 3'-splice site recognition;0.019484935011399!GO:0000178;exosome (RNase complex);0.0197539353239328!GO:0030119;AP-type membrane coat adaptor complex;0.0197639156475793!GO:0016407;acetyltransferase activity;0.020441610445562!GO:0030518;steroid hormone receptor signaling pathway;0.020457682783876!GO:0015036;disulfide oxidoreductase activity;0.0210713459827379!GO:0008632;apoptotic program;0.0210765347032049!GO:0042770;DNA damage response, signal transduction;0.0212243037436842!GO:0006284;base-excision repair;0.0216941734789098!GO:0009967;positive regulation of signal transduction;0.0217252349512149!GO:0031577;spindle checkpoint;0.0217252349512149!GO:0030145;manganese ion binding;0.0219048101850696!GO:0007034;vacuolar transport;0.0221928910162926!GO:0006541;glutamine metabolic process;0.0222550671322226!GO:0040008;regulation of growth;0.0223289321751156!GO:0043130;ubiquitin binding;0.0223397779582094!GO:0032182;small conjugating protein binding;0.0223397779582094!GO:0008097;5S rRNA binding;0.0223999153112162!GO:0030032;lamellipodium biogenesis;0.0224712866859566!GO:0045893;positive regulation of transcription, DNA-dependent;0.0227903285379601!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228134878742825!GO:0000096;sulfur amino acid metabolic process;0.0230697228798825!GO:0051540;metal cluster binding;0.0231633347433839!GO:0051536;iron-sulfur cluster binding;0.0231633347433839!GO:0000792;heterochromatin;0.0232580022289523!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0232643524690588!GO:0010468;regulation of gene expression;0.023383440437467!GO:0042393;histone binding;0.0234428123408838!GO:0031529;ruffle organization and biogenesis;0.0236435341183532!GO:0000725;recombinational repair;0.0238024003026841!GO:0000724;double-strand break repair via homologous recombination;0.0238024003026841!GO:0040029;regulation of gene expression, epigenetic;0.0248997301480403!GO:0006354;RNA elongation;0.0248997301480403!GO:0007569;cell aging;0.0250141125273461!GO:0000726;non-recombinational repair;0.0251925452418461!GO:0007004;telomere maintenance via telomerase;0.0262107836983896!GO:0051101;regulation of DNA binding;0.0264733270399447!GO:0006650;glycerophospholipid metabolic process;0.0267713601432039!GO:0016044;membrane organization and biogenesis;0.0267768427695346!GO:0031570;DNA integrity checkpoint;0.0272371436717349!GO:0031371;ubiquitin conjugating enzyme complex;0.0273014076879457!GO:0022408;negative regulation of cell-cell adhesion;0.0275504928162656!GO:0000781;chromosome, telomeric region;0.0278552157236032!GO:0050790;regulation of catalytic activity;0.0278759036241725!GO:0022406;membrane docking;0.0279113113356694!GO:0048278;vesicle docking;0.0279113113356694!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0280022314513801!GO:0008538;proteasome activator activity;0.0284779989938478!GO:0003756;protein disulfide isomerase activity;0.0286351330050833!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0286351330050833!GO:0009451;RNA modification;0.0287808067245161!GO:0035267;NuA4 histone acetyltransferase complex;0.029145717629076!GO:0005801;cis-Golgi network;0.0295210215651071!GO:0008320;protein transmembrane transporter activity;0.0295439515667127!GO:0001952;regulation of cell-matrix adhesion;0.0297484015268164!GO:0006417;regulation of translation;0.0303395095627503!GO:0006506;GPI anchor biosynthetic process;0.0306713422949413!GO:0004448;isocitrate dehydrogenase activity;0.0307724591810021!GO:0047485;protein N-terminus binding;0.0309162711314499!GO:0000152;nuclear ubiquitin ligase complex;0.0310273788574375!GO:0006007;glucose catabolic process;0.0310873759987069!GO:0000086;G2/M transition of mitotic cell cycle;0.0311429089052208!GO:0006892;post-Golgi vesicle-mediated transport;0.0312706249783875!GO:0042158;lipoprotein biosynthetic process;0.0315182247744515!GO:0006778;porphyrin metabolic process;0.0317050100931928!GO:0033013;tetrapyrrole metabolic process;0.0317050100931928!GO:0051098;regulation of binding;0.0321586046590915!GO:0022884;macromolecule transmembrane transporter activity;0.032293377888007!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.032293377888007!GO:0045792;negative regulation of cell size;0.0322962347814081!GO:0032940;secretion by cell;0.0323178202702282!GO:0030508;thiol-disulfide exchange intermediate activity;0.0324210361032108!GO:0005784;translocon complex;0.0329263950590234!GO:0030131;clathrin adaptor complex;0.0331348797767504!GO:0005586;collagen type III;0.0331348797767504!GO:0032259;methylation;0.0333868364627887!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0335302952644716!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0340434420538037!GO:0009124;nucleoside monophosphate biosynthetic process;0.0355457163462044!GO:0009123;nucleoside monophosphate metabolic process;0.0355457163462044!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0355457163462044!GO:0008408;3'-5' exonuclease activity;0.0361103148822357!GO:0043414;biopolymer methylation;0.0363019624704167!GO:0007346;regulation of progression through mitotic cell cycle;0.0373683144129351!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0375868225759741!GO:0043189;H4/H2A histone acetyltransferase complex;0.0379509643288726!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0381896788430995!GO:0000070;mitotic sister chromatid segregation;0.038222359184148!GO:0000819;sister chromatid segregation;0.0382402274446686!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0384691294527914!GO:0022411;cellular component disassembly;0.0393027256933193!GO:0008243;plasminogen activator activity;0.0393336937645522!GO:0030308;negative regulation of cell growth;0.0393935568776084!GO:0006505;GPI anchor metabolic process;0.0394369635175359!GO:0033559;unsaturated fatty acid metabolic process;0.0395952682558985!GO:0006636;unsaturated fatty acid biosynthetic process;0.0395952682558985!GO:0004532;exoribonuclease activity;0.0397804443986288!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0397804443986288!GO:0022415;viral reproductive process;0.0399036088869166!GO:0003923;GPI-anchor transamidase activity;0.0399036088869166!GO:0016255;attachment of GPI anchor to protein;0.0399036088869166!GO:0042765;GPI-anchor transamidase complex;0.0399036088869166!GO:0006739;NADP metabolic process;0.0399098227017738!GO:0016125;sterol metabolic process;0.0399967806536705!GO:0006904;vesicle docking during exocytosis;0.0400035785208106!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0402395215131013!GO:0045941;positive regulation of transcription;0.0402676989087304!GO:0005092;GDP-dissociation inhibitor activity;0.0407360690839791!GO:0009119;ribonucleoside metabolic process;0.0410932995504279!GO:0043601;nuclear replisome;0.041458571244411!GO:0030894;replisome;0.041458571244411!GO:0030041;actin filament polymerization;0.0421911832661145!GO:0007040;lysosome organization and biogenesis;0.0424534493332446!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.042479664827762!GO:0046128;purine ribonucleoside metabolic process;0.0438811029535618!GO:0042278;purine nucleoside metabolic process;0.0438811029535618!GO:0045936;negative regulation of phosphate metabolic process;0.0439356613981936!GO:0030384;phosphoinositide metabolic process;0.0441648895186575!GO:0008299;isoprenoid biosynthetic process;0.0446840985666966!GO:0017134;fibroblast growth factor binding;0.0446840985666966!GO:0030833;regulation of actin filament polymerization;0.0446960295756567!GO:0006266;DNA ligation;0.0451599888370135!GO:0043433;negative regulation of transcription factor activity;0.0451673415466843!GO:0006400;tRNA modification;0.0454982642471479!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0459749535245787!GO:0033043;regulation of organelle organization and biogenesis;0.0459749535245787!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0461274655801747!GO:0031418;L-ascorbic acid binding;0.0461274655801747!GO:0030125;clathrin vesicle coat;0.0463173527584062!GO:0030665;clathrin coated vesicle membrane;0.0463173527584062!GO:0019206;nucleoside kinase activity;0.0463173527584062!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0463174405945764!GO:0007162;negative regulation of cell adhesion;0.0474105621988152!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0476880393408532!GO:0008234;cysteine-type peptidase activity;0.0477136012904781!GO:0005680;anaphase-promoting complex;0.0477661304913556!GO:0005938;cell cortex;0.0477761809891924!GO:0006779;porphyrin biosynthetic process;0.0483231049708962!GO:0033014;tetrapyrrole biosynthetic process;0.0483231049708962!GO:0043492;ATPase activity, coupled to movement of substances;0.0483654708687603!GO:0042026;protein refolding;0.0483654708687603!GO:0000077;DNA damage checkpoint;0.0483654708687603!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0489471679688944!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0490905554478056!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0490905554478056!GO:0030911;TPR domain binding;0.0491969290052976!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.049241188106198!GO:0007033;vacuole organization and biogenesis;0.049917429327699
|sample_id=11541
|sample_id=11541
|sample_note=
|sample_note=
Line 75: Line 100:
|sample_tissue=umbilical vein
|sample_tissue=umbilical vein
|top_motifs=HSF1,2:1.30860254873;EN1,2:1.2067720461;TAL1_TCF{3,4,12}:1.11826289956;NFY{A,B,C}:1.01059123511;NR3C1:0.985497296507;PBX1:0.96904795767;PAX8:0.900292627726;CDC5L:0.88600477005;HOX{A5,B5}:0.879854834419;TFDP1:0.87938027578;SRF:0.850969631454;GFI1:0.840203646827;E2F1..5:0.796821700217;MYB:0.776080184057;TEAD1:0.738864886524;GFI1B:0.734737722466;LHX3,4:0.719543962124;ATF6:0.718099930499;NKX3-1:0.612025133898;ZNF384:0.597107642408;FOXD3:0.590251446429;SOX17:0.5832303129;FOX{I1,J2}:0.563663612517;TBP:0.511663723437;DBP:0.49610621798;KLF4:0.486700206681;PPARG:0.480104779719;ELK1,4_GABP{A,B1}:0.474752412598;HOXA9_MEIS1:0.469724957735;POU1F1:0.466902783462;EVI1:0.463473067785;ADNP_IRX_SIX_ZHX:0.461128402434;LEF1_TCF7_TCF7L1,2:0.455489796524;IKZF1:0.436407938784;MAFB:0.421572405573;NR1H4:0.413385270177;NANOG:0.388147827616;NRF1:0.378016422853;NKX6-1,2:0.36678375231;MYBL2:0.352544595391;NFATC1..3:0.351814927245;GATA4:0.350646399144;TP53:0.34180034562;RXR{A,B,G}:0.339334589509;POU5F1:0.338874354995;ZNF143:0.32116858511;YY1:0.321021845435;XBP1:0.316266579227;GLI1..3:0.31470043903;POU3F1..4:0.312246267271;MZF1:0.307136614692;GZF1:0.30427585846;NR6A1:0.301438018811;PAX4:0.297964668168;GTF2A1,2:0.288125285246;NKX2-2,8:0.285676996419;AHR_ARNT_ARNT2:0.28279662821;TLX1..3_NFIC{dimer}:0.27540874655;TEF:0.266014047606;UFEwm:0.262105367517;TBX4,5:0.262013184317;STAT1,3:0.260471910208;HMGA1,2:0.252733228024;T:0.249192423581;ONECUT1,2:0.23188441188;PRDM1:0.200507789892;PAX5:0.197398814877;SOX2:0.196483129102;EBF1:0.192189691716;CDX1,2,4:0.187280588703;ELF1,2,4:0.166115559593;TFAP4:0.161405153339;POU2F1..3:0.15180174699;ZIC1..3:0.151281917129;HNF4A_NR2F1,2:0.142502130807;FOSL2:0.142311967862;BPTF:0.132773899902;ZNF148:0.131492949648;PAX1,9:0.127670947901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.106993836319;NFE2L2:0.103384986661;SPZ1:0.0974263310731;SOX{8,9,10}:0.097094569534;BACH2:0.0933027158646;PRRX1,2:0.0914480759754;HAND1,2:0.088326735238;GTF2I:0.082693059396;NKX2-3_NKX2-5:0.0795353035946;ZNF238:0.0781198462396;FOS_FOS{B,L1}_JUN{B,D}:0.0714015703853;ALX4:0.0661594501643;FOXQ1:0.0573928251649;HNF1A:0.0554216973763;NKX2-1,4:0.0459760877691;PITX1..3:0.0431420330444;PDX1:0.0357842953109;SOX5:0.0285546346928;NKX3-2:0.0264284717165;CRX:0.0253374082189;HOX{A4,D4}:0.0223955727776;RFX1:0.0207264720667;RUNX1..3:0.00308098482189;TLX2:-0.0108943539325;HLF:-0.0191908425291;PATZ1:-0.0270512099311;JUN:-0.0281226109184;DMAP1_NCOR{1,2}_SMARC:-0.0469789816973;NFE2:-0.0498526445673;MEF2{A,B,C,D}:-0.0593192134239;TOPORS:-0.0641979123516;MAZ:-0.0644150458454;ALX1:-0.0727821147747;SMAD1..7,9:-0.0801620651311;NFIX:-0.0879587269977;RREB1:-0.0905588473578;CREB1:-0.101066042393;ESR1:-0.110579994432;FOXP3:-0.1292977758;AIRE:-0.131134798716;CEBPA,B_DDIT3:-0.134198042767;GCM1,2:-0.13476089949;NFE2L1:-0.143634906157;OCT4_SOX2{dimer}:-0.152009912929;ZNF423:-0.166099860341;TFCP2:-0.166335815649;NHLH1,2:-0.174434127139;ZBTB6:-0.177075509185;ATF5_CREB3:-0.183563106056;POU6F1:-0.189406061437;HBP1_HMGB_SSRP1_UBTF:-0.191696282704;ARID5B:-0.196996411324;HIF1A:-0.201342279474;CUX2:-0.204409511908;ESRRA:-0.206570194348;FOXA2:-0.214293824224;NFKB1_REL_RELA:-0.228436371635;MTE{core}:-0.228534892006;SP1:-0.246716955291;FOXN1:-0.252853874077;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26042463268;FOXL1:-0.264133441254;ZFP161:-0.264846089598;ZBTB16:-0.284429047481;NANOG{mouse}:-0.291133183952;PAX2:-0.292071918633;IRF7:-0.293821283867;GATA6:-0.299939468012;NR5A1,2:-0.311973210385;AR:-0.316543069416;STAT2,4,6:-0.322399594891;HOX{A6,A7,B6,B7}:-0.324239667022;XCPE1{core}:-0.353688038929;SREBF1,2:-0.355780076868;RFX2..5_RFXANK_RFXAP:-0.359452395436;ATF4:-0.368290891568;PAX6:-0.368611767934;TFAP2{A,C}:-0.370133764338;NFIL3:-0.375351035668;SPI1:-0.383833338824;RXRA_VDR{dimer}:-0.384967632873;REST:-0.385374241075;MED-1{core}:-0.401012980509;HES1:-0.402231741428;PAX3,7:-0.402843811292;ETS1,2:-0.403465343288;FOXM1:-0.412275794998;MTF1:-0.41757186691;SPIB:-0.444904445497;TGIF1:-0.449582177406;ATF2:-0.454597500431;HIC1:-0.463202137067;IRF1,2:-0.469462831926;bHLH_family:-0.477424733954;FOXP1:-0.478394368057;MYFfamily:-0.494997129168;STAT5{A,B}:-0.56307375821;HMX1:-0.571285817223;FOXO1,3,4:-0.575001244773;SNAI1..3:-0.577011300177;BREu{core}:-0.590481568938;FOX{D1,D2}:-0.627193633399;FOX{F1,F2,J1}:-0.639251619154;RORA:-0.642873294547;TFAP2B:-0.670025298081;EGR1..3:-0.680436405254;IKZF2:-0.743722834938;LMO2:-0.770497231757;ZEB1:-0.771758407129;VSX1,2:-0.809384445502;EP300:-0.829234792496;RBPJ:-0.990244646403;MYOD1:-1.44005021045
|top_motifs=HSF1,2:1.30860254873;EN1,2:1.2067720461;TAL1_TCF{3,4,12}:1.11826289956;NFY{A,B,C}:1.01059123511;NR3C1:0.985497296507;PBX1:0.96904795767;PAX8:0.900292627726;CDC5L:0.88600477005;HOX{A5,B5}:0.879854834419;TFDP1:0.87938027578;SRF:0.850969631454;GFI1:0.840203646827;E2F1..5:0.796821700217;MYB:0.776080184057;TEAD1:0.738864886524;GFI1B:0.734737722466;LHX3,4:0.719543962124;ATF6:0.718099930499;NKX3-1:0.612025133898;ZNF384:0.597107642408;FOXD3:0.590251446429;SOX17:0.5832303129;FOX{I1,J2}:0.563663612517;TBP:0.511663723437;DBP:0.49610621798;KLF4:0.486700206681;PPARG:0.480104779719;ELK1,4_GABP{A,B1}:0.474752412598;HOXA9_MEIS1:0.469724957735;POU1F1:0.466902783462;EVI1:0.463473067785;ADNP_IRX_SIX_ZHX:0.461128402434;LEF1_TCF7_TCF7L1,2:0.455489796524;IKZF1:0.436407938784;MAFB:0.421572405573;NR1H4:0.413385270177;NANOG:0.388147827616;NRF1:0.378016422853;NKX6-1,2:0.36678375231;MYBL2:0.352544595391;NFATC1..3:0.351814927245;GATA4:0.350646399144;TP53:0.34180034562;RXR{A,B,G}:0.339334589509;POU5F1:0.338874354995;ZNF143:0.32116858511;YY1:0.321021845435;XBP1:0.316266579227;GLI1..3:0.31470043903;POU3F1..4:0.312246267271;MZF1:0.307136614692;GZF1:0.30427585846;NR6A1:0.301438018811;PAX4:0.297964668168;GTF2A1,2:0.288125285246;NKX2-2,8:0.285676996419;AHR_ARNT_ARNT2:0.28279662821;TLX1..3_NFIC{dimer}:0.27540874655;TEF:0.266014047606;UFEwm:0.262105367517;TBX4,5:0.262013184317;STAT1,3:0.260471910208;HMGA1,2:0.252733228024;T:0.249192423581;ONECUT1,2:0.23188441188;PRDM1:0.200507789892;PAX5:0.197398814877;SOX2:0.196483129102;EBF1:0.192189691716;CDX1,2,4:0.187280588703;ELF1,2,4:0.166115559593;TFAP4:0.161405153339;POU2F1..3:0.15180174699;ZIC1..3:0.151281917129;HNF4A_NR2F1,2:0.142502130807;FOSL2:0.142311967862;BPTF:0.132773899902;ZNF148:0.131492949648;PAX1,9:0.127670947901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.106993836319;NFE2L2:0.103384986661;SPZ1:0.0974263310731;SOX{8,9,10}:0.097094569534;BACH2:0.0933027158646;PRRX1,2:0.0914480759754;HAND1,2:0.088326735238;GTF2I:0.082693059396;NKX2-3_NKX2-5:0.0795353035946;ZNF238:0.0781198462396;FOS_FOS{B,L1}_JUN{B,D}:0.0714015703853;ALX4:0.0661594501643;FOXQ1:0.0573928251649;HNF1A:0.0554216973763;NKX2-1,4:0.0459760877691;PITX1..3:0.0431420330444;PDX1:0.0357842953109;SOX5:0.0285546346928;NKX3-2:0.0264284717165;CRX:0.0253374082189;HOX{A4,D4}:0.0223955727776;RFX1:0.0207264720667;RUNX1..3:0.00308098482189;TLX2:-0.0108943539325;HLF:-0.0191908425291;PATZ1:-0.0270512099311;JUN:-0.0281226109184;DMAP1_NCOR{1,2}_SMARC:-0.0469789816973;NFE2:-0.0498526445673;MEF2{A,B,C,D}:-0.0593192134239;TOPORS:-0.0641979123516;MAZ:-0.0644150458454;ALX1:-0.0727821147747;SMAD1..7,9:-0.0801620651311;NFIX:-0.0879587269977;RREB1:-0.0905588473578;CREB1:-0.101066042393;ESR1:-0.110579994432;FOXP3:-0.1292977758;AIRE:-0.131134798716;CEBPA,B_DDIT3:-0.134198042767;GCM1,2:-0.13476089949;NFE2L1:-0.143634906157;OCT4_SOX2{dimer}:-0.152009912929;ZNF423:-0.166099860341;TFCP2:-0.166335815649;NHLH1,2:-0.174434127139;ZBTB6:-0.177075509185;ATF5_CREB3:-0.183563106056;POU6F1:-0.189406061437;HBP1_HMGB_SSRP1_UBTF:-0.191696282704;ARID5B:-0.196996411324;HIF1A:-0.201342279474;CUX2:-0.204409511908;ESRRA:-0.206570194348;FOXA2:-0.214293824224;NFKB1_REL_RELA:-0.228436371635;MTE{core}:-0.228534892006;SP1:-0.246716955291;FOXN1:-0.252853874077;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26042463268;FOXL1:-0.264133441254;ZFP161:-0.264846089598;ZBTB16:-0.284429047481;NANOG{mouse}:-0.291133183952;PAX2:-0.292071918633;IRF7:-0.293821283867;GATA6:-0.299939468012;NR5A1,2:-0.311973210385;AR:-0.316543069416;STAT2,4,6:-0.322399594891;HOX{A6,A7,B6,B7}:-0.324239667022;XCPE1{core}:-0.353688038929;SREBF1,2:-0.355780076868;RFX2..5_RFXANK_RFXAP:-0.359452395436;ATF4:-0.368290891568;PAX6:-0.368611767934;TFAP2{A,C}:-0.370133764338;NFIL3:-0.375351035668;SPI1:-0.383833338824;RXRA_VDR{dimer}:-0.384967632873;REST:-0.385374241075;MED-1{core}:-0.401012980509;HES1:-0.402231741428;PAX3,7:-0.402843811292;ETS1,2:-0.403465343288;FOXM1:-0.412275794998;MTF1:-0.41757186691;SPIB:-0.444904445497;TGIF1:-0.449582177406;ATF2:-0.454597500431;HIC1:-0.463202137067;IRF1,2:-0.469462831926;bHLH_family:-0.477424733954;FOXP1:-0.478394368057;MYFfamily:-0.494997129168;STAT5{A,B}:-0.56307375821;HMX1:-0.571285817223;FOXO1,3,4:-0.575001244773;SNAI1..3:-0.577011300177;BREu{core}:-0.590481568938;FOX{D1,D2}:-0.627193633399;FOX{F1,F2,J1}:-0.639251619154;RORA:-0.642873294547;TFAP2B:-0.670025298081;EGR1..3:-0.680436405254;IKZF2:-0.743722834938;LMO2:-0.770497231757;ZEB1:-0.771758407129;VSX1,2:-0.809384445502;EP300:-0.829234792496;RBPJ:-0.990244646403;MYOD1:-1.44005021045
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11541-120B2;search_select_hide=table117:FF:11541-120B2
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Smooth Muscle Cells - Umbilical Vein, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12597
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical vein
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC8025
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005129
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12597 CAGE DRX008510 DRR009382
Accession ID Hg19

Library idBAMCTSS
CNhs12597 DRZ000807 DRZ002192
Accession ID Hg38

Library idBAMCTSS
CNhs12597 DRZ012157 DRZ013542
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.45
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.155
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0582
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0379
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.413
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0582
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.115
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0582
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.218
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00307
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.751
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0582
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0274
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.539
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.34
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.157
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.235
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0865
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.478
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.235
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.346
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12597

Jaspar motifP-value
MA0002.20.124
MA0003.10.538
MA0004.10.0604
MA0006.10.193
MA0007.10.608
MA0009.10.712
MA0014.10.91
MA0017.10.793
MA0018.20.441
MA0019.10.368
MA0024.14.71755e-5
MA0025.10.0271
MA0027.10.857
MA0028.11.73912e-5
MA0029.10.725
MA0030.10.0164
MA0031.10.0693
MA0035.20.598
MA0038.19.0413e-5
MA0039.20.667
MA0040.10.538
MA0041.10.795
MA0042.10.617
MA0043.10.276
MA0046.10.543
MA0047.20.192
MA0048.18.09788e-4
MA0050.11.80477e-7
MA0051.11.50741e-4
MA0052.10.645
MA0055.15.24848e-4
MA0057.10.721
MA0058.10.121
MA0059.10.526
MA0060.12.46707e-10
MA0061.10.339
MA0062.20.146
MA0065.20.603
MA0066.10.766
MA0067.10.0652
MA0068.10.719
MA0069.10.433
MA0070.10.149
MA0071.10.99
MA0072.10.415
MA0073.10.399
MA0074.10.589
MA0076.10.00898
MA0077.10.368
MA0078.10.92
MA0079.20.0654
MA0080.23.86558e-9
MA0081.10.0363
MA0083.10.00103
MA0084.10.087
MA0087.10.863
MA0088.10.00833
MA0090.19.21102e-4
MA0091.10.906
MA0092.10.466
MA0093.10.132
MA0099.20.233
MA0100.10.0113
MA0101.10.554
MA0102.20.331
MA0103.11.48048e-5
MA0104.20.816
MA0105.10.0563
MA0106.10.03
MA0107.10.102
MA0108.20.00889
MA0111.10.858
MA0112.20.346
MA0113.10.985
MA0114.10.732
MA0115.10.464
MA0116.10.458
MA0117.10.346
MA0119.10.366
MA0122.10.446
MA0124.10.0758
MA0125.10.494
MA0131.10.53
MA0135.10.0929
MA0136.10.00282
MA0137.20.854
MA0138.20.502
MA0139.10.81
MA0140.10.679
MA0141.10.203
MA0142.10.45
MA0143.10.516
MA0144.10.928
MA0145.10.349
MA0146.10.826
MA0147.10.929
MA0148.10.624
MA0149.10.828
MA0150.10.0575
MA0152.10.0322
MA0153.10.647
MA0154.10.576
MA0155.10.512
MA0156.10.155
MA0157.10.15
MA0159.10.042
MA0160.10.167
MA0162.10.021
MA0163.10.0029
MA0164.10.684
MA0258.10.0993
MA0259.10.961



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12597

Novel motifP-value
10.984
100.52
1000.597
1010.665
1020.0834
1030.997
1040.618
1050.748
1060.0045
1070.757
1080.41
1090.784
110.938
1100.223
1110.485
1120.0388
1130.189
1140.316
1150.342
1160.373
1170.49
1180.665
1190.152
120.468
1200.194
1210.641
1220.0443
1230.00107
1240.929
1250.756
1260.808
1270.936
1280.423
1290.228
130.126
1300.026
1310.511
1320.839
1330.646
1340.746
1350.404
1360.704
1370.0833
1380.0596
1391.57057e-4
140.315
1400.883
1410.2
1420.677
1430.773
1440.834
1450.709
1460.95
1470.34
1480.961
1490.761
150.353
1500.824
1510.529
1520.513
1530.538
1540.904
1550.0386
1560.333
1570.125
1580.218
1590.369
160.536
1600.886
1610.483
1620.626
1630.448
1640.562
1650.81
1660.0548
1670.915
1680.529
1690.693
170.982
180.487
190.418
20.478
200.943
210.295
220.974
230.0651
240.564
250.252
260.342
270.56
280.779
290.628
30.616
300.543
310.641
320.064
330.141
340.611
350.75
360.478
370.284
380.327
390.977
40.629
400.487
410.0426
420.905
430.303
440.816
450.346
460.839
470.956
480.9
490.285
50.396
500.553
510.747
520.165
530.169
540.507
550.914
560.987
570.98
580.106
590.422
60.863
600.011
610.377
620.0308
630.929
640.592
650.183
660.0232
670.701
680.823
690.723
70.399
702.72358e-5
710.723
720.787
730.839
740.556
750.598
760.174
770.763
780.981
790.59
80.926
800.536
810.265
820.0447
830.289
840.267
850.0286
860.407
870.519
880.779
890.192
90.971
900.8
910.234
920.195
930.9
940.618
950.314
960.359
970.845
980.0106
990.0204



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12597


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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