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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004977
|DRA_sample_Accession=CAGE@SAMD00004977
|accession_numbers=CAGE;DRX008288;DRR009160;DRZ000585;DRZ001970
|accession_numbers=CAGE;DRX008288;DRR009160;DRZ000585;DRZ001970;DRZ011935;DRZ013320
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg38.nobarcode.ctss.bed.gz
|id=FF:11561-120D4
|id=FF:11561-120D4
|is_a=EFO:0002091;;FF:0000250
|is_a=EFO:0002091;;FF:0000250
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|library_id=CNhs11914
|library_id=CNhs11914
|library_id_phase_based=2:CNhs11914
|library_id_phase_based=2:CNhs11914
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11561
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11561
|name=Fibroblast - skin normal, donor2
|name=Fibroblast - skin normal, donor2
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 91: Line 101:
|top_motifs=GZF1:1.6185396237;HBP1_HMGB_SSRP1_UBTF:1.57553994505;XBP1:1.56002937443;ALX4:1.43281934621;HIF1A:1.41439384866;ZNF238:1.40356258798;ESR1:1.33774108124;HES1:1.29132962851;GCM1,2:1.25078969228;PAX1,9:1.25075452774;KLF4:1.23026255981;SRF:1.13106501939;PPARG:1.10957394869;HMX1:1.10553826731;UFEwm:1.09458044841;TFAP4:1.08288672155;NKX3-1:1.07953369706;EN1,2:1.07838752023;RXR{A,B,G}:1.07641916309;SMAD1..7,9:1.06784539207;MAFB:1.04425043014;HOX{A5,B5}:1.00400123687;TEAD1:1.00110250874;NR3C1:0.999207463955;GFI1B:0.99426382889;NKX3-2:0.970093693639;NANOG{mouse}:0.969958924815;GFI1:0.947707408308;NFIX:0.941709706581;NKX2-2,8:0.935619702443;HSF1,2:0.919098400815;EBF1:0.89721990979;TP53:0.889812718633;HMGA1,2:0.882350922959;NFE2L1:0.855160437508;RXRA_VDR{dimer}:0.815813046991;SOX17:0.796915108663;MZF1:0.787120406379;ZIC1..3:0.764412553781;GTF2I:0.724361178071;PRDM1:0.711159280806;GTF2A1,2:0.704841909373;MYBL2:0.700620116157;MAZ:0.692746987586;MYB:0.684621911892;EP300:0.658697624632;TLX1..3_NFIC{dimer}:0.623658241796;HAND1,2:0.619200921582;TAL1_TCF{3,4,12}:0.600605705107;IKZF1:0.596875434265;SPZ1:0.587367198565;MTE{core}:0.581664187151;PAX8:0.56567694152;EVI1:0.53299454628;STAT1,3:0.528035789737;ZBTB6:0.503283957686;ZNF148:0.478737894686;TFCP2:0.473371930388;NFATC1..3:0.472572490061;NR1H4:0.462618600816;TFAP2B:0.460608754081;ELK1,4_GABP{A,B1}:0.452754847939;GLI1..3:0.440549205116;ATF6:0.438992986022;YY1:0.435377896867;GATA4:0.419580098037;T:0.417760433088;TFDP1:0.416142597683;FOXL1:0.395200347171;HOX{A4,D4}:0.366657604092;XCPE1{core}:0.358079529351;LHX3,4:0.337295243993;TBP:0.322391507069;PATZ1:0.315288692123;TBX4,5:0.274044849326;HLF:0.25865125089;POU5F1:0.237852365726;NFE2L2:0.236257004527;ZNF143:0.232070934176;NR5A1,2:0.226253795708;LEF1_TCF7_TCF7L1,2:0.215613525344;PAX5:0.205445503169;E2F1..5:0.199769414199;MEF2{A,B,C,D}:0.197111014379;BACH2:0.192119942522;CEBPA,B_DDIT3:0.184867466239;POU3F1..4:0.183921638983;FOX{I1,J2}:0.167828262594;AHR_ARNT_ARNT2:0.151137556496;NRF1:0.149565107795;TFAP2{A,C}:0.146597025411;RREB1:0.141426986984;STAT2,4,6:0.110232617197;ZNF384:0.0795578546486;SOX5:0.0681078453208;MTF1:0.0473235146862;HOX{A6,A7,B6,B7}:0.0278141996716;TOPORS:0.0243060761048;TLX2:0.0212360258841;ZNF423:-0.00617170533067;CRX:-0.0158377884646;ARID5B:-0.0306401941938;FOS_FOS{B,L1}_JUN{B,D}:-0.0337321543535;FOSL2:-0.0400965680893;PRRX1,2:-0.0410910299501;NKX6-1,2:-0.0547510024879;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0810392412786;NHLH1,2:-0.105543944026;NFE2:-0.115006553804;NR6A1:-0.122322607847;TEF:-0.124422760868;NFY{A,B,C}:-0.129519459607;NKX2-3_NKX2-5:-0.132036687028;ELF1,2,4:-0.138173605731;CREB1:-0.139014696931;PDX1:-0.145853351247;MED-1{core}:-0.148425610542;FOXA2:-0.159740764229;SOX2:-0.164205835174;DMAP1_NCOR{1,2}_SMARC:-0.166067985954;DBP:-0.176961352702;CDC5L:-0.189104061675;EGR1..3:-0.190741951129;JUN:-0.205397191826;HNF1A:-0.22869689139;RUNX1..3:-0.250622835785;RFX1:-0.254660384981;MYFfamily:-0.254983836067;HIC1:-0.262717939774;ALX1:-0.275701708168;SPI1:-0.286035894939;TGIF1:-0.298587026715;REST:-0.301340562502;POU1F1:-0.304678524339;ESRRA:-0.336867720115;PAX3,7:-0.338834609226;FOXN1:-0.357324070565;AR:-0.357570654439;ATF5_CREB3:-0.3704951865;NFIL3:-0.382877695796;FOX{D1,D2}:-0.398438783384;FOXQ1:-0.398920805826;ETS1,2:-0.403655260949;PBX1:-0.404061258951;OCT4_SOX2{dimer}:-0.419653175085;PAX2:-0.433586419752;IRF1,2:-0.439831884577;FOXP3:-0.442291485031;PAX4:-0.449656845622;BPTF:-0.451312142366;POU6F1:-0.451432517029;NFKB1_REL_RELA:-0.46309387665;VSX1,2:-0.463750036222;HNF4A_NR2F1,2:-0.470330925729;SOX{8,9,10}:-0.485254528848;SP1:-0.488390803186;ATF4:-0.500106885691;FOXM1:-0.511019297149;NKX2-1,4:-0.523125892974;NANOG:-0.526729582386;FOXO1,3,4:-0.527312639203;SPIB:-0.540750930698;ZFP161:-0.556903548326;AIRE:-0.563884486376;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.57446344148;BREu{core}:-0.611862327264;SREBF1,2:-0.628966551003;PAX6:-0.643580085175;GATA6:-0.666574710017;PITX1..3:-0.671978598406;ADNP_IRX_SIX_ZHX:-0.673152639837;POU2F1..3:-0.686171251239;ONECUT1,2:-0.717039765611;CUX2:-0.722113536321;IRF7:-0.727868122444;FOXP1:-0.737155719241;FOXD3:-0.748562009164;ATF2:-0.807219691694;STAT5{A,B}:-0.808873921529;ZEB1:-0.809776109289;SNAI1..3:-0.838034663357;RBPJ:-0.909053426662;bHLH_family:-0.909884027654;IKZF2:-0.935168288759;ZBTB16:-0.955888201495;RFX2..5_RFXANK_RFXAP:-0.961938816436;CDX1,2,4:-1.07511426357;HOXA9_MEIS1:-1.08377961013;FOX{F1,F2,J1}:-1.12864018461;RORA:-1.15946108508;LMO2:-1.27660418376;MYOD1:-1.65231384015
|top_motifs=GZF1:1.6185396237;HBP1_HMGB_SSRP1_UBTF:1.57553994505;XBP1:1.56002937443;ALX4:1.43281934621;HIF1A:1.41439384866;ZNF238:1.40356258798;ESR1:1.33774108124;HES1:1.29132962851;GCM1,2:1.25078969228;PAX1,9:1.25075452774;KLF4:1.23026255981;SRF:1.13106501939;PPARG:1.10957394869;HMX1:1.10553826731;UFEwm:1.09458044841;TFAP4:1.08288672155;NKX3-1:1.07953369706;EN1,2:1.07838752023;RXR{A,B,G}:1.07641916309;SMAD1..7,9:1.06784539207;MAFB:1.04425043014;HOX{A5,B5}:1.00400123687;TEAD1:1.00110250874;NR3C1:0.999207463955;GFI1B:0.99426382889;NKX3-2:0.970093693639;NANOG{mouse}:0.969958924815;GFI1:0.947707408308;NFIX:0.941709706581;NKX2-2,8:0.935619702443;HSF1,2:0.919098400815;EBF1:0.89721990979;TP53:0.889812718633;HMGA1,2:0.882350922959;NFE2L1:0.855160437508;RXRA_VDR{dimer}:0.815813046991;SOX17:0.796915108663;MZF1:0.787120406379;ZIC1..3:0.764412553781;GTF2I:0.724361178071;PRDM1:0.711159280806;GTF2A1,2:0.704841909373;MYBL2:0.700620116157;MAZ:0.692746987586;MYB:0.684621911892;EP300:0.658697624632;TLX1..3_NFIC{dimer}:0.623658241796;HAND1,2:0.619200921582;TAL1_TCF{3,4,12}:0.600605705107;IKZF1:0.596875434265;SPZ1:0.587367198565;MTE{core}:0.581664187151;PAX8:0.56567694152;EVI1:0.53299454628;STAT1,3:0.528035789737;ZBTB6:0.503283957686;ZNF148:0.478737894686;TFCP2:0.473371930388;NFATC1..3:0.472572490061;NR1H4:0.462618600816;TFAP2B:0.460608754081;ELK1,4_GABP{A,B1}:0.452754847939;GLI1..3:0.440549205116;ATF6:0.438992986022;YY1:0.435377896867;GATA4:0.419580098037;T:0.417760433088;TFDP1:0.416142597683;FOXL1:0.395200347171;HOX{A4,D4}:0.366657604092;XCPE1{core}:0.358079529351;LHX3,4:0.337295243993;TBP:0.322391507069;PATZ1:0.315288692123;TBX4,5:0.274044849326;HLF:0.25865125089;POU5F1:0.237852365726;NFE2L2:0.236257004527;ZNF143:0.232070934176;NR5A1,2:0.226253795708;LEF1_TCF7_TCF7L1,2:0.215613525344;PAX5:0.205445503169;E2F1..5:0.199769414199;MEF2{A,B,C,D}:0.197111014379;BACH2:0.192119942522;CEBPA,B_DDIT3:0.184867466239;POU3F1..4:0.183921638983;FOX{I1,J2}:0.167828262594;AHR_ARNT_ARNT2:0.151137556496;NRF1:0.149565107795;TFAP2{A,C}:0.146597025411;RREB1:0.141426986984;STAT2,4,6:0.110232617197;ZNF384:0.0795578546486;SOX5:0.0681078453208;MTF1:0.0473235146862;HOX{A6,A7,B6,B7}:0.0278141996716;TOPORS:0.0243060761048;TLX2:0.0212360258841;ZNF423:-0.00617170533067;CRX:-0.0158377884646;ARID5B:-0.0306401941938;FOS_FOS{B,L1}_JUN{B,D}:-0.0337321543535;FOSL2:-0.0400965680893;PRRX1,2:-0.0410910299501;NKX6-1,2:-0.0547510024879;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0810392412786;NHLH1,2:-0.105543944026;NFE2:-0.115006553804;NR6A1:-0.122322607847;TEF:-0.124422760868;NFY{A,B,C}:-0.129519459607;NKX2-3_NKX2-5:-0.132036687028;ELF1,2,4:-0.138173605731;CREB1:-0.139014696931;PDX1:-0.145853351247;MED-1{core}:-0.148425610542;FOXA2:-0.159740764229;SOX2:-0.164205835174;DMAP1_NCOR{1,2}_SMARC:-0.166067985954;DBP:-0.176961352702;CDC5L:-0.189104061675;EGR1..3:-0.190741951129;JUN:-0.205397191826;HNF1A:-0.22869689139;RUNX1..3:-0.250622835785;RFX1:-0.254660384981;MYFfamily:-0.254983836067;HIC1:-0.262717939774;ALX1:-0.275701708168;SPI1:-0.286035894939;TGIF1:-0.298587026715;REST:-0.301340562502;POU1F1:-0.304678524339;ESRRA:-0.336867720115;PAX3,7:-0.338834609226;FOXN1:-0.357324070565;AR:-0.357570654439;ATF5_CREB3:-0.3704951865;NFIL3:-0.382877695796;FOX{D1,D2}:-0.398438783384;FOXQ1:-0.398920805826;ETS1,2:-0.403655260949;PBX1:-0.404061258951;OCT4_SOX2{dimer}:-0.419653175085;PAX2:-0.433586419752;IRF1,2:-0.439831884577;FOXP3:-0.442291485031;PAX4:-0.449656845622;BPTF:-0.451312142366;POU6F1:-0.451432517029;NFKB1_REL_RELA:-0.46309387665;VSX1,2:-0.463750036222;HNF4A_NR2F1,2:-0.470330925729;SOX{8,9,10}:-0.485254528848;SP1:-0.488390803186;ATF4:-0.500106885691;FOXM1:-0.511019297149;NKX2-1,4:-0.523125892974;NANOG:-0.526729582386;FOXO1,3,4:-0.527312639203;SPIB:-0.540750930698;ZFP161:-0.556903548326;AIRE:-0.563884486376;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.57446344148;BREu{core}:-0.611862327264;SREBF1,2:-0.628966551003;PAX6:-0.643580085175;GATA6:-0.666574710017;PITX1..3:-0.671978598406;ADNP_IRX_SIX_ZHX:-0.673152639837;POU2F1..3:-0.686171251239;ONECUT1,2:-0.717039765611;CUX2:-0.722113536321;IRF7:-0.727868122444;FOXP1:-0.737155719241;FOXD3:-0.748562009164;ATF2:-0.807219691694;STAT5{A,B}:-0.808873921529;ZEB1:-0.809776109289;SNAI1..3:-0.838034663357;RBPJ:-0.909053426662;bHLH_family:-0.909884027654;IKZF2:-0.935168288759;ZBTB16:-0.955888201495;RFX2..5_RFXANK_RFXAP:-0.961938816436;CDX1,2,4:-1.07511426357;HOXA9_MEIS1:-1.08377961013;FOX{F1,F2,J1}:-1.12864018461;RORA:-1.15946108508;LMO2:-1.27660418376;MYOD1:-1.65231384015
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11561-120D4;search_select_hide=table117:FF:11561-120D4
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Fibroblast - skin normal, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11914
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age3 year old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004977
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11914 CAGE DRX008288 DRR009160
Accession ID Hg19

Library idBAMCTSS
CNhs11914 DRZ000585 DRZ001970
Accession ID Hg38

Library idBAMCTSS
CNhs11914 DRZ011935 DRZ013320
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.123
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
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C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11914

Jaspar motifP-value
MA0002.20.241
MA0003.10.641
MA0004.10.00118
MA0006.10.0574
MA0007.10.756
MA0009.10.545
MA0014.10.195
MA0017.10.148
MA0018.20.00112
MA0019.10.389
MA0024.10.571
MA0025.10.0717
MA0027.10.805
MA0028.10.472
MA0029.10.419
MA0030.10.054
MA0031.10.0987
MA0035.20.0535
MA0038.10.702
MA0039.20.0592
MA0040.10.441
MA0041.10.661
MA0042.10.951
MA0043.10.00347
MA0046.10.618
MA0047.20.26
MA0048.10.0041
MA0050.14.90195e-5
MA0051.10.00656
MA0052.10.228
MA0055.10.0609
MA0057.10.348
MA0058.16.07594e-4
MA0059.10.209
MA0060.10.0982
MA0061.10.0584
MA0062.20.168
MA0065.20.116
MA0066.10.34
MA0067.10.0314
MA0068.10.61
MA0069.10.0139
MA0070.10.442
MA0071.10.746
MA0072.10.777
MA0073.10.942
MA0074.10.881
MA0076.10.391
MA0077.10.826
MA0078.10.899
MA0079.20.726
MA0080.22.36182e-7
MA0081.10.0218
MA0083.10.00308
MA0084.10.313
MA0087.10.971
MA0088.10.684
MA0090.16.42359e-4
MA0091.10.209
MA0092.10.223
MA0093.10.00621
MA0099.20.326
MA0100.10.6
MA0101.18.58832e-5
MA0102.20.0726
MA0103.13.59354e-6
MA0104.22.6611e-4
MA0105.10.464
MA0106.10.186
MA0107.12.08465e-4
MA0108.20.0211
MA0111.10.0623
MA0112.20.0971
MA0113.10.606
MA0114.10.0282
MA0115.10.273
MA0116.10.403
MA0117.10.913
MA0119.10.3
MA0122.10.739
MA0124.10.861
MA0125.10.746
MA0131.10.897
MA0135.10.638
MA0136.14.77179e-7
MA0137.20.838
MA0138.20.423
MA0139.10.608
MA0140.10.294
MA0141.10.474
MA0142.10.2
MA0143.10.737
MA0144.10.65
MA0145.10.103
MA0146.10.741
MA0147.10.00779
MA0148.10.226
MA0149.10.45
MA0150.10.0572
MA0152.10.0101
MA0153.10.449
MA0154.10.549
MA0155.10.619
MA0156.10.0192
MA0157.10.351
MA0159.10.81
MA0160.10.0295
MA0162.10.082
MA0163.10.0663
MA0164.10.753
MA0258.10.809
MA0259.10.29



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11914

Novel motifP-value
10.831
100.905
1000.242
1010.137
1020.232
1030.541
1040.706
1050.551
1060.847
1070.917
1080.736
1090.846
110.796
1100.49
1110.385
1120.945
1130.00275
1140.813
1150.59
1160.582
1170.668
1180.442
1190.343
120.646
1200.675
1210.604
1220.209
1235.25223e-6
1240.313
1250.912
1260.241
1270.519
1280.401
1290.455
130.814
1300.161
1310.521
1320.382
1330.552
1340.0723
1350.11
1360.119
1370.618
1380.382
1390.103
140.302
1400.0749
1410.0853
1420.393
1430.869
1440.788
1450.526
1460.861
1470.39
1480.0793
1490.00777
150.363
1500.219
1510.389
1520.0344
1530.247
1540.584
1550.00279
1560.881
1570.0975
1580.00795
1590.326
160.225
1600.681
1610.0901
1620.559
1630.877
1640.752
1650.112
1660.187
1670.148
1680.397
1690.126
170.999
180.107
190.0127
20.23
200.424
210.134
220.501
230.855
240.359
250.499
260.504
270.867
280.639
290.708
30.588
300.242
310.974
322.48119e-8
330.574
340.87
350.442
360.0624
370.105
380.345
390.316
40.991
400.0785
410.91
420.517
430.772
440.357
450.895
460.901
470.988
480.912
490.282
50.814
500.335
510.624
520.886
530.227
540.915
550.174
560.564
570.594
580.165
590.253
60.606
600.393
610.398
620.49
630.706
640.564
650.999
660.465
670.588
680.483
690.502
70.275
700.141
710.828
720.482
730.0545
740.532
750.949
760.161
770.011
780.127
790.0239
80.777
800.997
810.267
820.992
830.183
840.275
850.471
860.164
870.0533
880.59
890.107
90.593
900.441
910.761
920.759
930.278
940.715
950.564
960.828
970.61
980.181
990.0682



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11914


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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