FF:11603-120I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005065 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005065 | ||
|accession_numbers=CAGE;DRX008308;DRR009180;DRZ000605;DRZ001990;DRZ011955;DRZ013340 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037267;DRR041633;DRZ007275 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000078 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.64!4316.58!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.95!894.37!SEBOX;;chr19:4153613..4153652,+!p1@CREB3L3!2.69!491.41!CREB3L3;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.69!487.48!SEBOX;;chr7:73038839..73038862,-!p1@MLXIPL!2.28!187.72!MLXIPL;;chr19:50432453..50432468,+!p1@ATF5!2.15!7183.48!ATF5;;chr15:53082521..53082549,-!p1@ONECUT1!2.15!140.54!ONECUT1;;chr1:214161272..214161322,+!p1@PROX1!2.02!143.49!PROX1;;chr12:100867627..100867652,+!p1@NR1H4!2.00!99.27!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.96!90.42!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.93!83.54!HNF4A;;chr19:33793430..33793447,-!p1@CEBPA!1.91!322.37!CEBPA;;chr19:50435736..50435781,+!p3@ATF5!1.85!94.35!ATF5;;chr19:46367576..46367592,+!p1@FOXA3!1.82!64.87!FOXA3;;chr1:27240455..27240474,-!p1@NR0B2!1.77!57.99!NR0B2;;chr1:201979743..201979762,+!p1@ELF3!1.71!50.12!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.66!45.21!ELF3;;chr20:42984330..42984364,+!p2@HNF4A!1.66!45.21!HNF4A;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.31!FOXA1;;chr16:85932760..85932775,+!p1@IRF8!1.59!38.33!IRF8;;chr2:46524897..46524911,+!p2@EPAS1!1.54!90.42!EPAS1;;chr8:76319876..76319926,+!p1@HNF4G!1.54!33.42!HNF4G;;chr1:199996733..199996781,+!p1@NR5A2!1.46!27.52!NR5A2;;chr7:73038867..73038878,-!p2@MLXIPL!1.44!26.54!MLXIPL;;chr8:11561684..11561751,+!p1@GATA4!1.44!26.54!GATA4;;chr6:126240380..126240430,+!p2@NCOA7!1.43!65.85!NCOA7;;chr19:4153719..4153730,+!p2@CREB3L3!1.42!25.55!CREB3L3;;chr17:26694979..26695007,-!p4@SEBOX!1.42!25.55!SEBOX;;chr8:71316428..71316459,-!p2@NCOA2!1.41!41.28!NCOA2;;chr19:50435673..50435690,+!p8@ATF5!1.39!23.59!ATF5;;chr17:53344945..53344977,+!p2@HLF!1.37!22.61!HLF;;chr20:51589133..51589159,+!p2@TSHZ2!1.35!21.62!TSHZ2;;chr9:137217986..137218049,+!p3@RXRA!1.33!57.99!RXRA;;chr11:61520075..61520136,+!p1@C11orf9!1.32!41.28!C11orf9;;chr6:126240356..126240379,+!p7@NCOA7!1.29!22.61!NCOA7;;chr12:100897130..100897149,+!p3@NR1H4!1.29!18.67!NR1H4;;chr16:67198683..67198698,+!p2@HSF4!1.29!18.67!HSF4;;chr1:151804244..151804310,-!p1@RORC!1.29!18.67!RORC;;chr17:17726907..17726958,-!p2@SREBF1!1.28!108.11!SREBF1;;chrX:131547625..131547644,-!p4@MBNL3!1.27!17.69!MBNL3;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.69!KDM5D;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.73!SALL1;;chr1:199996702..199996732,+!p5@NR5A2!1.20!14.74!NR5A2;;chr20:22564895..22564910,-!p1@FOXA2!1.20!14.74!FOXA2;;chr8:71316403..71316427,-!p6@NCOA2!1.17!16.71!NCOA2;;chr17:53342311..53342400,+!p1@HLF!1.17!15.73!HLF;;chr19:50435704..50435718,+!p11@ATF5!1.17!13.76!ATF5;;chr6:91006518..91006570,-!p1@BACH2!1.14!29.48!BACH2;;chrY:2803415..2803468,+!p1@ZFY!1.14!12.78!ZFY;;chr10:94449703..94449718,+!p1@HHEX!1.12!47.18!HHEX;;chr17:17723626..17723663,-!p4@SREBF1!1.11!24.57!SREBF1;;chr22:29196492..29196503,-!p3@XBP1!1.11!18.67!XBP1;;chr2:68592406..68592424,+!p1@PLEK!1.11!11.79!PLEK;;chr11:47400078..47400106,-!p1@SPI1!1.11!11.79!SPI1;;chr17:26694940..26694949,-!p6@SEBOX!1.11!11.79!SEBOX;;chr1:214161358..214161377,+!p3@PROX1!1.11!11.79!PROX1;;chr11:47279504..47279563,+!p1@NR1H3!1.07!24.57!NR1H3;;chr3:126073018..126073036,-!p3@KLF15!1.07!10.81!KLF15;;chr3:147111198..147111225,+!p4@ZIC1!1.07!10.81!ZIC1;;chr19:50434005..50434020,+!p10@ATF5!1.07!10.81!ATF5;;chr1:119457098..119457116,-!p12@TBX15!1.07!10.81!TBX15;;chr18:55102598..55102623,+!p1@ONECUT2!1.07!10.81!ONECUT2;;chr22:46546494..46546525,+!p2@PPARA!1.06!20.64!PPARA;;chr7:113726357..113726443,+!p1@FOXP2!1.05!17.69!FOXP2;;chr22:29196433..29196445,-!p4@XBP1!1.03!10.81!XBP1;;chr15:53082178..53082190,-!p3@ONECUT1!1.03!9.83!ONECUT1;;chr1:161208013..161208038,-!p1@NR1I3!1.03!9.83!NR1I3;;chr1:214161328..214161348,+!p2@PROX1!1.03!9.83!PROX1;;chr22:29196547..29196563,-!p2@XBP1!1.02!352.83!XBP1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.01!11.79!L3MBTL4;;chr11:113930291..113930339,+!p2@ZBTB16!1.00!14.74!ZBTB16;;chr9:137218281..137218340,+!p1@RXRA!0.99!255.54!RXRA;;chrX:57619083..57619113,+!p1@ZXDB!0.99!8.85!ZXDB;;chr16:52581025..52581072,-!p1@TOX3!0.99!8.85!TOX3;;chr17:26694801..26694812,-!p5@SEBOX!0.99!8.85!SEBOX;;chr17:26694831..26694842,-!p8@SEBOX!0.99!8.85!SEBOX;;chr6:151977801..151977813,+!p8@ESR1!0.99!8.85!ESR1;;chr7:99621306..99621328,+!p5@ZKSCAN1!0.99!8.85!ZKSCAN1;;chr3:126076242..126076257,-!p1@KLF15!0.98!10.81!KLF15;;chr2:10091815..10091864,+!p1@GRHL1!0.96!10.81!GRHL1;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.67!PPARG;;chr16:88519743..88519754,+!p2@ZFPM1!0.95!8.85!ZFPM1;;chr17:26695013..26695024,-!p7@SEBOX!0.95!7.86!SEBOX;;chr17:53344980..53345011,+!p3@HLF!0.95!7.86!HLF;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.86!ZIC1;;chr14:38064590..38064606,-!p2@FOXA1!0.95!7.86!FOXA1;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.86!NCOA7;;chr6:391743..391759,+!p1@IRF4!0.95!7.86!IRF4;;chr7:73038865..73038866,-!p4@MLXIPL!0.95!7.86!MLXIPL;;chr1:200011711..200011752,+!p3@NR5A2!0.95!7.86!NR5A2;;chr21:40177845..40177863,+!p1@ETS2!0.94!468.81!ETS2;;chr2:46524878..46524891,+!p3@EPAS1!0.94!13.76!EPAS1;;chr1:61548225..61548299,+!p1@NFIA!0.92!100.25!NFIA;;chr17:40540484..40540537,-!p2@STAT3!0.92!72.73!STAT3;;chr17:41223072..41223083,-!p12@BRCA1!0.90!6.88!BRCA1;;chr19:33865223..33865254,+!p5@CEBPG!0.90!6.88!CEBPG;;chr19:35760698..35760738,+!p8@USF2!0.90!6.88!USF2;;chr1:200008734..200008765,+!p2@NR5A2!0.90!6.88!NR5A2;;chr20:43030002..43030028,+!p3@HNF4A!0.90!6.88!HNF4A;;chr3:126072967..126072981,-!p4@KLF15!0.90!6.88!KLF15;;chr9:22447422..22447483,+!p1@DMRTA1!0.90!6.88!DMRTA1;;chr10:45495709..45495725,+!p5@ZNF22!0.90!6.88!ZNF22;;chr12:121416340..121416360,+!p1@HNF1A!0.90!6.88!HNF1A;;chrX:66763856..66763896,+!p1@AR!0.88!9.83!AR;;chr15:60884706..60884743,-!p1@RORA!0.87!35.38!RORA;;chr3:126076264..126076305,-!p2@KLF15!0.86!8.85!KLF15;;chr6:126240442..126240459,+!p4@NCOA7!0.85!7.86!NCOA7;;chr1:209979467..209979494,-!p1@IRF6!0.85!6.88!IRF6;;chr20:22566089..22566097,-!p6@FOXA2!0.84!5.90!FOXA2;;chr7:114055245..114055258,+!p7@FOXP2!0.84!5.90!FOXP2;;chr7:73038889..73038905,-!p3@MLXIPL!0.84!5.90!MLXIPL;;chr7:97840743..97840786,+!p1@BHLHA15!0.84!5.90!BHLHA15;;chrX:131547596..131547609,-!p10@MBNL3!0.84!5.90!MBNL3;;chrX:131540410..131540438,-!p13@MBNL3!0.84!5.90!MBNL3;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.90!SALL1;;chr3:27763807..27763822,-!p1@EOMES!0.84!5.90!EOMES;;chr11:47400062..47400077,-!p2@SPI1!0.84!5.90!SPI1;;chr12:100867695..100867706,+!p6@NR1H4!0.84!5.90!NR1H4;;chr12:100867736..100867750,+!p4@NR1H4!0.84!5.90!NR1H4;;chr11:615942..615957,-!p1@IRF7!0.83!58.97!IRF7;;chr10:94449675..94449694,+!p2@HHEX!0.79!14.74!HHEX;;chr3:114819124..114819200,-!p3@ZBTB20!0.79!12.78!ZBTB20;;chr2:85981222..85981259,+!p2@ATOH8!0.79!8.85!ATOH8;;chr17:17723746..17723766,-!p5@SREBF1!0.79!8.85!SREBF1;;chr20:50159198..50159299,-!p1@NFATC2!0.79!7.86!NFATC2;;chr20:39317868..39317884,-!p1@MAFB!0.78!64.87!MAFB;;chr16:79634624..79634642,-!p1@MAF!0.78!21.62!MAF;;chr19:33865009..33865090,+!p3@CEBPG!0.78!6.88!CEBPG;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.88!TSHZ2;;chr2:46612334..46612349,+!p6@EPAS1!0.78!6.88!EPAS1;;chr3:12330560..12330579,+!p1@PPARG!0.78!5.90!PPARG;;chr19:56652621..56652641,+!p2@ZNF444!0.77!10.81!ZNF444;;chr18:42277095..42277130,+!p8@SETBP1!0.77!4.91!SETBP1;;chr18:55102628..55102646,+!p2@ONECUT2!0.77!4.91!ONECUT2;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.91!ATOH8;;chr3:147111505..147111529,+!p6@ZIC1!0.77!4.91!ZIC1;;chr3:24536332..24536358,-!p2@THRB!0.77!4.91!THRB;;chr10:114710098..114710130,+!p2@TCF7L2!0.76!39.31!TCF7L2;;chr2:10183651..10183713,+!p1@KLF11!0.76!38.33!KLF11;;chr13:41635029..41635044,-!p4@ELF1!0.76!10.81!ELF1;;chrX:107018969..107019024,-!p6@TSC22D3!0.76!6.88!TSC22D3;;chr11:113930425..113930471,+!p1@ZBTB16!0.75!6.88!ZBTB16;;chr15:60884747..60884774,-!p3@RORA!0.74!11.79!RORA;;chr12:24715376..24715432,-!p1@SOX5!0.74!5.90!SOX5;;chr10:51565239..51565263,+!p2@NCOA4!0.72!113.03!NCOA4;;chr19:46271505..46271575,-!p2@SIX5!0.72!11.79!SIX5;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.91!NCOA7;;chr17:17726892..17726903,-!p6@SREBF1!0.72!4.91!SREBF1;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.86!GATA6;;chr10:43134047..43134079,-!p3@ZNF33B!0.71!5.90!ZNF33B;;chr8:48650715..48650735,-!p1@CEBPD!0.70!589.70!CEBPD;;chr3:193853927..193853944,+!p1@HES1!0.70!149.39!HES1;;chr5:76383133..76383186,-!p2@ZBED3!0.70!8.85!ZBED3;;chr17:40540377..40540481,-!p1@STAT3!0.69!227.03!STAT3;;chr22:41777927..41777971,+!p1@TEF!0.69!37.35!TEF;;chr3:24536253..24536328,-!p1@THRB!0.69!7.86!THRB;;chr1:10754477..10754517,-!p1@CASZ1!0.69!6.88!CASZ1;;chr17:17723702..17723721,-!p7@SREBF1!0.69!4.91!SREBF1;;chr16:67198633..67198671,+!p1@HSF4!0.69!3.93!HSF4;;chr17:36105074..36105086,-!p2@HNF1B!0.69!3.93!HNF1B;;chr18:42260840..42260860,+!p2@SETBP1!0.69!3.93!SETBP1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.69!3.93!ZBTB7C;;chr22:46567171..46567203,+!p6@PPARA!0.69!3.93!PPARA;;chr3:12329464..12329472,+!p6@PPARG!0.69!3.93!PPARG;;chr3:187455529..187455544,-!p5@BCL6!0.69!3.93!BCL6;;chr3:187455680..187455700,-!p4@BCL6!0.69!3.93!BCL6;;chr4:149363494..149363543,-!p1@NR3C2!0.69!3.93!NR3C2;;chr7:115670804..115670825,-!p1@TFEC!0.69!3.93!TFEC;;chr19:50435645..50435653,+!p16@ATF5!0.69!3.93!ATF5;;chr1:199996831..199996843,+!p4@NR5A2!0.69!3.93!NR5A2;;chr1:214161619..214161629,+!p5@PROX1!0.69!3.93!PROX1;;chr20:51589107..51589120,+!p9@TSHZ2!0.69!3.93!TSHZ2;;chr20:51589792..51589811,+!p7@TSHZ2!0.69!3.93!TSHZ2;;chr10:45495946..45495976,+!p2@ZNF22!0.69!3.93!ZNF22;;chr11:113930401..113930422,+!p3@ZBTB16!0.69!3.93!ZBTB16;;chr11:16133391..16133439,-!p6@SOX6!0.69!3.93!SOX6;;chr12:100867777..100867788,+!p5@NR1H4!0.69!3.93!NR1H4;;chr12:24102576..24102623,-!p2@SOX5!0.69!3.93!SOX5;;chr2:27357446..27357475,-!p2@PREB!0.68!14.74!PREB;;chr8:145535378..145535420,+!p4@HSF1!0.68!4.91!HSF1;;chr19:33864600..33864732,+!p1@CEBPG!0.67!119.90!CEBPG;;chr4:146402997..146403020,+!p1@SMAD1!0.67!29.48!SMAD1;;chr10:98592751..98592765,+!p5@LCOR!0.67!4.91!LCOR;;chr17:38498402..38498445,+!p3@RARA!0.66!14.74!RARA;;chrX:66763815..66763854,+!p2@AR!0.66!4.91!AR;;chr12:12764917..12764931,+!p4@CREBL2!0.66!4.91!CREBL2;;chr2:1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| |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.64!4316.58!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.95!894.37!SEBOX;;chr19:4153613..4153652,+!p1@CREB3L3!2.69!491.41!CREB3L3;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.69!487.48!SEBOX;;chr7:73038839..73038862,-!p1@MLXIPL!2.28!187.72!MLXIPL;;chr19:50432453..50432468,+!p1@ATF5!2.15!7183.48!ATF5;;chr15:53082521..53082549,-!p1@ONECUT1!2.15!140.54!ONECUT1;;chr1:214161272..214161322,+!p1@PROX1!2.02!143.49!PROX1;;chr12:100867627..100867652,+!p1@NR1H4!2.00!99.27!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.96!90.42!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.93!83.54!HNF4A;;chr19:33793430..33793447,-!p1@CEBPA!1.91!322.37!CEBPA;;chr19:50435736..50435781,+!p3@ATF5!1.85!94.35!ATF5;;chr19:46367576..46367592,+!p1@FOXA3!1.82!64.87!FOXA3;;chr1:27240455..27240474,-!p1@NR0B2!1.77!57.99!NR0B2;;chr1:201979743..201979762,+!p1@ELF3!1.71!50.12!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.66!45.21!ELF3;;chr20:42984330..42984364,+!p2@HNF4A!1.66!45.21!HNF4A;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.31!FOXA1;;chr16:85932760..85932775,+!p1@IRF8!1.59!38.33!IRF8;;chr2:46524897..46524911,+!p2@EPAS1!1.54!90.42!EPAS1;;chr8:76319876..76319926,+!p1@HNF4G!1.54!33.42!HNF4G;;chr1:199996733..199996781,+!p1@NR5A2!1.46!27.52!NR5A2;;chr7:73038867..73038878,-!p2@MLXIPL!1.44!26.54!MLXIPL;;chr8:11561684..11561751,+!p1@GATA4!1.44!26.54!GATA4;;chr6:126240380..126240430,+!p2@NCOA7!1.43!65.85!NCOA7;;chr19:4153719..4153730,+!p2@CREB3L3!1.42!25.55!CREB3L3;;chr17:26694979..26695007,-!p4@SEBOX!1.42!25.55!SEBOX;;chr8:71316428..71316459,-!p2@NCOA2!1.41!41.28!NCOA2;;chr19:50435673..50435690,+!p8@ATF5!1.39!23.59!ATF5;;chr17:53344945..53344977,+!p2@HLF!1.37!22.61!HLF;;chr20:51589133..51589159,+!p2@TSHZ2!1.35!21.62!TSHZ2;;chr9:137217986..137218049,+!p3@RXRA!1.33!57.99!RXRA;;chr11:61520075..61520136,+!p1@C11orf9!1.32!41.28!C11orf9;;chr6:126240356..126240379,+!p7@NCOA7!1.29!22.61!NCOA7;;chr12:100897130..100897149,+!p3@NR1H4!1.29!18.67!NR1H4;;chr16:67198683..67198698,+!p2@HSF4!1.29!18.67!HSF4;;chr1:151804244..151804310,-!p1@RORC!1.29!18.67!RORC;;chr17:17726907..17726958,-!p2@SREBF1!1.28!108.11!SREBF1;;chrX:131547625..131547644,-!p4@MBNL3!1.27!17.69!MBNL3;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.69!KDM5D;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.73!SALL1;;chr1:199996702..199996732,+!p5@NR5A2!1.20!14.74!NR5A2;;chr20:22564895..22564910,-!p1@FOXA2!1.20!14.74!FOXA2;;chr8:71316403..71316427,-!p6@NCOA2!1.17!16.71!NCOA2;;chr17:53342311..53342400,+!p1@HLF!1.17!15.73!HLF;;chr19:50435704..50435718,+!p11@ATF5!1.17!13.76!ATF5;;chr6:91006518..91006570,-!p1@BACH2!1.14!29.48!BACH2;;chrY:2803415..2803468,+!p1@ZFY!1.14!12.78!ZFY;;chr10:94449703..94449718,+!p1@HHEX!1.12!47.18!HHEX;;chr17:17723626..17723663,-!p4@SREBF1!1.11!24.57!SREBF1;;chr22:29196492..29196503,-!p3@XBP1!1.11!18.67!XBP1;;chr2:68592406..68592424,+!p1@PLEK!1.11!11.79!PLEK;;chr11:47400078..47400106,-!p1@SPI1!1.11!11.79!SPI1;;chr17:26694940..26694949,-!p6@SEBOX!1.11!11.79!SEBOX;;chr1:214161358..214161377,+!p3@PROX1!1.11!11.79!PROX1;;chr11:47279504..47279563,+!p1@NR1H3!1.07!24.57!NR1H3;;chr3:126073018..126073036,-!p3@KLF15!1.07!10.81!KLF15;;chr3:147111198..147111225,+!p4@ZIC1!1.07!10.81!ZIC1;;chr19:50434005..50434020,+!p10@ATF5!1.07!10.81!ATF5;;chr1:119457098..119457116,-!p12@TBX15!1.07!10.81!TBX15;;chr18:55102598..55102623,+!p1@ONECUT2!1.07!10.81!ONECUT2;;chr22:46546494..46546525,+!p2@PPARA!1.06!20.64!PPARA;;chr7:113726357..113726443,+!p1@FOXP2!1.05!17.69!FOXP2;;chr22:29196433..29196445,-!p4@XBP1!1.03!10.81!XBP1;;chr15:53082178..53082190,-!p3@ONECUT1!1.03!9.83!ONECUT1;;chr1:161208013..161208038,-!p1@NR1I3!1.03!9.83!NR1I3;;chr1:214161328..214161348,+!p2@PROX1!1.03!9.83!PROX1;;chr22:29196547..29196563,-!p2@XBP1!1.02!352.83!XBP1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.01!11.79!L3MBTL4;;chr11:113930291..113930339,+!p2@ZBTB16!1.00!14.74!ZBTB16;;chr9:137218281..137218340,+!p1@RXRA!0.99!255.54!RXRA;;chrX:57619083..57619113,+!p1@ZXDB!0.99!8.85!ZXDB;;chr16:52581025..52581072,-!p1@TOX3!0.99!8.85!TOX3;;chr17:26694801..26694812,-!p5@SEBOX!0.99!8.85!SEBOX;;chr17:26694831..26694842,-!p8@SEBOX!0.99!8.85!SEBOX;;chr6:151977801..151977813,+!p8@ESR1!0.99!8.85!ESR1;;chr7:99621306..99621328,+!p5@ZKSCAN1!0.99!8.85!ZKSCAN1;;chr3:126076242..126076257,-!p1@KLF15!0.98!10.81!KLF15;;chr2:10091815..10091864,+!p1@GRHL1!0.96!10.81!GRHL1;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.67!PPARG;;chr16:88519743..88519754,+!p2@ZFPM1!0.95!8.85!ZFPM1;;chr17:26695013..26695024,-!p7@SEBOX!0.95!7.86!SEBOX;;chr17:53344980..53345011,+!p3@HLF!0.95!7.86!HLF;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.86!ZIC1;;chr14:38064590..38064606,-!p2@FOXA1!0.95!7.86!FOXA1;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.86!NCOA7;;chr6:391743..391759,+!p1@IRF4!0.95!7.86!IRF4;;chr7:73038865..73038866,-!p4@MLXIPL!0.95!7.86!MLXIPL;;chr1:200011711..200011752,+!p3@NR5A2!0.95!7.86!NR5A2;;chr21:40177845..40177863,+!p1@ETS2!0.94!468.81!ETS2;;chr2:46524878..46524891,+!p3@EPAS1!0.94!13.76!EPAS1;;chr1:61548225..61548299,+!p1@NFIA!0.92!100.25!NFIA;;chr17:40540484..40540537,-!p2@STAT3!0.92!72.73!STAT3;;chr17:41223072..41223083,-!p12@BRCA1!0.90!6.88!BRCA1;;chr19:33865223..33865254,+!p5@CEBPG!0.90!6.88!CEBPG;;chr19:35760698..35760738,+!p8@USF2!0.90!6.88!USF2;;chr1:200008734..200008765,+!p2@NR5A2!0.90!6.88!NR5A2;;chr20:43030002..43030028,+!p3@HNF4A!0.90!6.88!HNF4A;;chr3:126072967..126072981,-!p4@KLF15!0.90!6.88!KLF15;;chr9:22447422..22447483,+!p1@DMRTA1!0.90!6.88!DMRTA1;;chr10:45495709..45495725,+!p5@ZNF22!0.90!6.88!ZNF22;;chr12:121416340..121416360,+!p1@HNF1A!0.90!6.88!HNF1A;;chrX:66763856..66763896,+!p1@AR!0.88!9.83!AR;;chr15:60884706..60884743,-!p1@RORA!0.87!35.38!RORA;;chr3:126076264..126076305,-!p2@KLF15!0.86!8.85!KLF15;;chr6:126240442..126240459,+!p4@NCOA7!0.85!7.86!NCOA7;;chr1:209979467..209979494,-!p1@IRF6!0.85!6.88!IRF6;;chr20:22566089..22566097,-!p6@FOXA2!0.84!5.90!FOXA2;;chr7:114055245..114055258,+!p7@FOXP2!0.84!5.90!FOXP2;;chr7:73038889..73038905,-!p3@MLXIPL!0.84!5.90!MLXIPL;;chr7:97840743..97840786,+!p1@BHLHA15!0.84!5.90!BHLHA15;;chrX:131547596..131547609,-!p10@MBNL3!0.84!5.90!MBNL3;;chrX:131540410..131540438,-!p13@MBNL3!0.84!5.90!MBNL3;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.90!SALL1;;chr3:27763807..27763822,-!p1@EOMES!0.84!5.90!EOMES;;chr11:47400062..47400077,-!p2@SPI1!0.84!5.90!SPI1;;chr12:100867695..100867706,+!p6@NR1H4!0.84!5.90!NR1H4;;chr12:100867736..100867750,+!p4@NR1H4!0.84!5.90!NR1H4;;chr11:615942..615957,-!p1@IRF7!0.83!58.97!IRF7;;chr10:94449675..94449694,+!p2@HHEX!0.79!14.74!HHEX;;chr3:114819124..114819200,-!p3@ZBTB20!0.79!12.78!ZBTB20;;chr2:85981222..85981259,+!p2@ATOH8!0.79!8.85!ATOH8;;chr17:17723746..17723766,-!p5@SREBF1!0.79!8.85!SREBF1;;chr20:50159198..50159299,-!p1@NFATC2!0.79!7.86!NFATC2;;chr20:39317868..39317884,-!p1@MAFB!0.78!64.87!MAFB;;chr16:79634624..79634642,-!p1@MAF!0.78!21.62!MAF;;chr19:33865009..33865090,+!p3@CEBPG!0.78!6.88!CEBPG;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.88!TSHZ2;;chr2:46612334..46612349,+!p6@EPAS1!0.78!6.88!EPAS1;;chr3:12330560..12330579,+!p1@PPARG!0.78!5.90!PPARG;;chr19:56652621..56652641,+!p2@ZNF444!0.77!10.81!ZNF444;;chr18:42277095..42277130,+!p8@SETBP1!0.77!4.91!SETBP1;;chr18:55102628..55102646,+!p2@ONECUT2!0.77!4.91!ONECUT2;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.91!ATOH8;;chr3:147111505..147111529,+!p6@ZIC1!0.77!4.91!ZIC1;;chr3:24536332..24536358,-!p2@THRB!0.77!4.91!THRB;;chr10:114710098..114710130,+!p2@TCF7L2!0.76!39.31!TCF7L2;;chr2:10183651..10183713,+!p1@KLF11!0.76!38.33!KLF11;;chr13:41635029..41635044,-!p4@ELF1!0.76!10.81!ELF1;;chrX:107018969..107019024,-!p6@TSC22D3!0.76!6.88!TSC22D3;;chr11:113930425..113930471,+!p1@ZBTB16!0.75!6.88!ZBTB16;;chr15:60884747..60884774,-!p3@RORA!0.74!11.79!RORA;;chr12:24715376..24715432,-!p1@SOX5!0.74!5.90!SOX5;;chr10:51565239..51565263,+!p2@NCOA4!0.72!113.03!NCOA4;;chr19:46271505..46271575,-!p2@SIX5!0.72!11.79!SIX5;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.91!NCOA7;;chr17:17726892..17726903,-!p6@SREBF1!0.72!4.91!SREBF1;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.86!GATA6;;chr10:43134047..43134079,-!p3@ZNF33B!0.71!5.90!ZNF33B;;chr8:48650715..48650735,-!p1@CEBPD!0.70!589.70!CEBPD;;chr3:193853927..193853944,+!p1@HES1!0.70!149.39!HES1;;chr5:76383133..76383186,-!p2@ZBED3!0.70!8.85!ZBED3;;chr17:40540377..40540481,-!p1@STAT3!0.69!227.03!STAT3;;chr22:41777927..41777971,+!p1@TEF!0.69!37.35!TEF;;chr3:24536253..24536328,-!p1@THRB!0.69!7.86!THRB;;chr1:10754477..10754517,-!p1@CASZ1!0.69!6.88!CASZ1;;chr17:17723702..17723721,-!p7@SREBF1!0.69!4.91!SREBF1;;chr16:67198633..67198671,+!p1@HSF4!0.69!3.93!HSF4;;chr17:36105074..36105086,-!p2@HNF1B!0.69!3.93!HNF1B;;chr18:42260840..42260860,+!p2@SETBP1!0.69!3.93!SETBP1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.69!3.93!ZBTB7C;;chr22:46567171..46567203,+!p6@PPARA!0.69!3.93!PPARA;;chr3:12329464..12329472,+!p6@PPARG!0.69!3.93!PPARG;;chr3:187455529..187455544,-!p5@BCL6!0.69!3.93!BCL6;;chr3:187455680..187455700,-!p4@BCL6!0.69!3.93!BCL6;;chr4:149363494..149363543,-!p1@NR3C2!0.69!3.93!NR3C2;;chr7:115670804..115670825,-!p1@TFEC!0.69!3.93!TFEC;;chr19:50435645..50435653,+!p16@ATF5!0.69!3.93!ATF5;;chr1:199996831..199996843,+!p4@NR5A2!0.69!3.93!NR5A2;;chr1:214161619..214161629,+!p5@PROX1!0.69!3.93!PROX1;;chr20:51589107..51589120,+!p9@TSHZ2!0.69!3.93!TSHZ2;;chr20:51589792..51589811,+!p7@TSHZ2!0.69!3.93!TSHZ2;;chr10:45495946..45495976,+!p2@ZNF22!0.69!3.93!ZNF22;;chr11:113930401..113930422,+!p3@ZBTB16!0.69!3.93!ZBTB16;;chr11:16133391..16133439,-!p6@SOX6!0.69!3.93!SOX6;;chr12:100867777..100867788,+!p5@NR1H4!0.69!3.93!NR1H4;;chr12:24102576..24102623,-!p2@SOX5!0.69!3.93!SOX5;;chr2:27357446..27357475,-!p2@PREB!0.68!14.74!PREB;;chr8:145535378..145535420,+!p4@HSF1!0.68!4.91!HSF1;;chr19:33864600..33864732,+!p1@CEBPG!0.67!119.90!CEBPG;;chr4:146402997..146403020,+!p1@SMAD1!0.67!29.48!SMAD1;;chr10:98592751..98592765,+!p5@LCOR!0.67!4.91!LCOR;;chr17:38498402..38498445,+!p3@RARA!0.66!14.74!RARA;;chrX:66763815..66763854,+!p2@AR!0.66!4.91!AR;;chr12:12764917..12764931,+!p4@CREBL2!0.66!4.91!CREBL2;;chr2:1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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11603-120I1 | |id=FF:11603-120I1 | ||
|is_a=EFO:0002091;;FF:0000078 | |is_a=EFO:0002091;;FF:0000078 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12349 | |||
|library_id_phase_based=2:CNhs12349 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11603 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.AGTTCC.11603 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11603 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.AGTTCC.11603 | |||
|name=Hepatocyte, donor2 | |name=Hepatocyte, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12349,LSID913,release011,COMPLETED | |profile_hcage=CNhs12349,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.148642435742889,0,0,0,0,0.61157328326986,0,0.473350926076494,0.591839008883905,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318797534041053,0,0,0,0,0,-0.0979578962680575,0,0,0.56000561512646,0,0,0,0,0,0,0,0,0,0,0,0,0.24004593971211,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.0256788916576327,0,-0.0969923612426051,0,0,0.374776917176384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920500629745296,0,0,0,-0.0394153936976398,0.024862869498872,0,0,0,0,-0.0980353512377064,0.473208919555965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0522688418204285,0,0,0,0.457486167140933,0.815201515478037,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC5205 | |rna_catalog_number=SC5205 | ||
| Line 58: | Line 82: | ||
|rna_tube_id=120I1 | |rna_tube_id=120I1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10066.AGTTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=HNF1A:6.65549531596;HNF4A_NR2F1,2:5.8252131274;FOXA2:4.98107583832;NR6A1:4.43411433712;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.06915884956;STAT2,4,6:3.49887799375;CUX2:2.80770407046;FOX{F1,F2,J1}:2.77450416568;AR:2.55679763246;BPTF:2.37043993093;NKX2-1,4:2.36913389136;ARID5B:2.20015929911;EVI1:1.99054941932;NFE2L1:1.94766619209;MTF1:1.9163991095;FOXQ1:1.78116914507;ALX4:1.73044193195;POU6F1:1.6756523842;CEBPA,B_DDIT3:1.62946010527;NR1H4:1.57160284591;FOXD3:1.55349547374;FOXM1:1.42719327397;TAL1_TCF{3,4,12}:1.38301299308;PPARG:1.3214122391;ADNP_IRX_SIX_ZHX:1.28907404876;GATA6:1.26163595698;MYOD1:1.23682801526;GLI1..3:1.18127140454;DBP:1.13107356936;FOX{D1,D2}:1.12431648238;T:1.04218508986;NFIL3:0.964172117782;RXRA_VDR{dimer}:0.879085319748;IRF7:0.844193707636;SNAI1..3:0.835051057386;LMO2:0.831349438617;HLF:0.791784430382;ZEB1:0.790712820737;FOXP3:0.745310251749;TEF:0.710863102282;TFCP2:0.671884402127;PAX1,9:0.662520809282;ONECUT1,2:0.653959178452;TBP:0.640287419455;NKX3-2:0.606954620972;bHLH_family:0.55749102145;FOX{I1,J2}:0.532387301399;PAX3,7:0.492909830439;NR5A1,2:0.459063704902;HIF1A:0.4362110993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.422784419439;CRX:0.414536172052;TLX2:0.395671907438;RXR{A,B,G}:0.388074384783;HMGA1,2:0.385020285099;RBPJ:0.371147341839;HOX{A4,D4}:0.344557490183;PAX4:0.296443551795;NFIX:0.288032929524;MAFB:0.286435444336;UFEwm:0.28085317854;ZBTB16:0.280274268046;PAX6:0.261451193819;PDX1:0.130457852331;FOXL1:0.108596530556;IKZF2:0.0982240383436;FOXP1:0.0632286397476;HAND1,2:0.0409322060421;NKX2-2,8:0.0286983026687;MYFfamily:-0.0675971099326;RORA:-0.0711830508907;MTE{core}:-0.0863993777856;EP300:-0.111612710643;ALX1:-0.144937034047;MED-1{core}:-0.169944113954;HES1:-0.172875349282;SMAD1..7,9:-0.176357536458;NHLH1,2:-0.195232368352;SP1:-0.217747570357;CDX1,2,4:-0.22669293263;PBX1:-0.226844388431;HIC1:-0.235199361539;YY1:-0.247795338284;TLX1..3_NFIC{dimer}:-0.247915935134;REST:-0.260325278086;MAZ:-0.273380184125;IRF1,2:-0.300126467055;SPI1:-0.301066168917;VSX1,2:-0.318020665596;NFKB1_REL_RELA:-0.327433695767;STAT1,3:-0.334395045134;TGIF1:-0.364744534321;ATF6:-0.378193712776;SREBF1,2:-0.402813870757;SPIB:-0.425806096436;NFE2:-0.446006143499;ZNF143:-0.446696623329;PAX2:-0.470674327406;ELF1,2,4:-0.498654738134;EN1,2:-0.49884658606;HOX{A5,B5}:-0.522293891042;STAT5{A,B}:-0.546378855108;RUNX1..3:-0.557304863478;ETS1,2:-0.568962054957;ZNF423:-0.574390361244;FOXN1:-0.597473892476;AIRE:-0.599334708501;MEF2{A,B,C,D}:-0.601389325833;DMAP1_NCOR{1,2}_SMARC:-0.602983045857;EBF1:-0.632298767855;HOXA9_MEIS1:-0.635090651589;GTF2A1,2:-0.638738950202;TFAP4:-0.667494156167;GCM1,2:-0.706217846602;SOX{8,9,10}:-0.71056046552;ATF5_CREB3:-0.714489504404;ZFP161:-0.71487313878;TP53:-0.726729419758;PITX1..3:-0.745555708466;TEAD1:-0.750287631556;POU2F1..3:-0.762100230793;GTF2I:-0.768774196924;EGR1..3:-0.783190602749;RREB1:-0.790275066201;LHX3,4:-0.797554392169;FOS_FOS{B,L1}_JUN{B,D}:-0.809207030445;PATZ1:-0.81047696821;TFAP2B:-0.821259576134;BACH2:-0.826868455091;ZNF238:-0.836260237543;OCT4_SOX2{dimer}:-0.850590631607;PRDM1:-0.861142570426;BREu{core}:-0.863486706824;KLF4:-0.875776340762;TOPORS:-0.88553355275;NFE2L2:-0.896751293167;SOX5:-0.92334682833;POU5F1:-0.92894654221;ZNF148:-0.943594342133;POU3F1..4:-0.945861153116;PAX5:-0.957441851565;FOSL2:-0.957889020903;NFY{A,B,C}:-0.980852368787;ESR1:-0.992168219952;TFAP2{A,C}:-0.995177280221;ATF2:-1.00151870904;NFATC1..3:-1.00428612554;MYBL2:-1.00791810141;ESRRA:-1.01240312871;GFI1B:-1.02191251905;GFI1:-1.02629357181;HMX1:-1.04252605078;LEF1_TCF7_TCF7L1,2:-1.05420612686;AHR_ARNT_ARNT2:-1.05673893204;TBX4,5:-1.06116839425;ELK1,4_GABP{A,B1}:-1.09455307427;ZBTB6:-1.14666550357;GZF1:-1.17041838293;NR3C1:-1.17474575855;PRRX1,2:-1.20116986782;SPZ1:-1.21628413378;SRF:-1.21773027025;TFDP1:-1.3086258572;CDC5L:-1.33480686145;E2F1..5:-1.33800357631;IKZF1:-1.35793441118;GATA4:-1.3682301698;POU1F1:-1.38955795321;ATF4:-1.39420279749;RFX1:-1.3957727093;NRF1:-1.39866370415;JUN:-1.4143409126;FOXO1,3,4:-1.42485180086;CREB1:-1.4277968685;SOX17:-1.43732530083;MYB:-1.44333820843;XCPE1{core}:-1.44636086224;HBP1_HMGB_SSRP1_UBTF:-1.54096540199;NKX6-1,2:-1.56615881915;RFX2..5_RFXANK_RFXAP:-1.57394093522;NANOG{mouse}:-1.59001671872;ZIC1..3:-1.60032594321;NKX2-3_NKX2-5:-1.60825442786;MZF1:-1.6990672721;HSF1,2:-1.7610812492;NKX3-1:-1.84837146953;SOX2:-1.8648003746;ZNF384:-1.87171673586;HOX{A6,A7,B6,B7}:-1.94567448692;NANOG:-1.95433601362;XBP1:-2.00779966803;PAX8:-2.53869878951 | |top_motifs=HNF1A:6.65549531596;HNF4A_NR2F1,2:5.8252131274;FOXA2:4.98107583832;NR6A1:4.43411433712;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.06915884956;STAT2,4,6:3.49887799375;CUX2:2.80770407046;FOX{F1,F2,J1}:2.77450416568;AR:2.55679763246;BPTF:2.37043993093;NKX2-1,4:2.36913389136;ARID5B:2.20015929911;EVI1:1.99054941932;NFE2L1:1.94766619209;MTF1:1.9163991095;FOXQ1:1.78116914507;ALX4:1.73044193195;POU6F1:1.6756523842;CEBPA,B_DDIT3:1.62946010527;NR1H4:1.57160284591;FOXD3:1.55349547374;FOXM1:1.42719327397;TAL1_TCF{3,4,12}:1.38301299308;PPARG:1.3214122391;ADNP_IRX_SIX_ZHX:1.28907404876;GATA6:1.26163595698;MYOD1:1.23682801526;GLI1..3:1.18127140454;DBP:1.13107356936;FOX{D1,D2}:1.12431648238;T:1.04218508986;NFIL3:0.964172117782;RXRA_VDR{dimer}:0.879085319748;IRF7:0.844193707636;SNAI1..3:0.835051057386;LMO2:0.831349438617;HLF:0.791784430382;ZEB1:0.790712820737;FOXP3:0.745310251749;TEF:0.710863102282;TFCP2:0.671884402127;PAX1,9:0.662520809282;ONECUT1,2:0.653959178452;TBP:0.640287419455;NKX3-2:0.606954620972;bHLH_family:0.55749102145;FOX{I1,J2}:0.532387301399;PAX3,7:0.492909830439;NR5A1,2:0.459063704902;HIF1A:0.4362110993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.422784419439;CRX:0.414536172052;TLX2:0.395671907438;RXR{A,B,G}:0.388074384783;HMGA1,2:0.385020285099;RBPJ:0.371147341839;HOX{A4,D4}:0.344557490183;PAX4:0.296443551795;NFIX:0.288032929524;MAFB:0.286435444336;UFEwm:0.28085317854;ZBTB16:0.280274268046;PAX6:0.261451193819;PDX1:0.130457852331;FOXL1:0.108596530556;IKZF2:0.0982240383436;FOXP1:0.0632286397476;HAND1,2:0.0409322060421;NKX2-2,8:0.0286983026687;MYFfamily:-0.0675971099326;RORA:-0.0711830508907;MTE{core}:-0.0863993777856;EP300:-0.111612710643;ALX1:-0.144937034047;MED-1{core}:-0.169944113954;HES1:-0.172875349282;SMAD1..7,9:-0.176357536458;NHLH1,2:-0.195232368352;SP1:-0.217747570357;CDX1,2,4:-0.22669293263;PBX1:-0.226844388431;HIC1:-0.235199361539;YY1:-0.247795338284;TLX1..3_NFIC{dimer}:-0.247915935134;REST:-0.260325278086;MAZ:-0.273380184125;IRF1,2:-0.300126467055;SPI1:-0.301066168917;VSX1,2:-0.318020665596;NFKB1_REL_RELA:-0.327433695767;STAT1,3:-0.334395045134;TGIF1:-0.364744534321;ATF6:-0.378193712776;SREBF1,2:-0.402813870757;SPIB:-0.425806096436;NFE2:-0.446006143499;ZNF143:-0.446696623329;PAX2:-0.470674327406;ELF1,2,4:-0.498654738134;EN1,2:-0.49884658606;HOX{A5,B5}:-0.522293891042;STAT5{A,B}:-0.546378855108;RUNX1..3:-0.557304863478;ETS1,2:-0.568962054957;ZNF423:-0.574390361244;FOXN1:-0.597473892476;AIRE:-0.599334708501;MEF2{A,B,C,D}:-0.601389325833;DMAP1_NCOR{1,2}_SMARC:-0.602983045857;EBF1:-0.632298767855;HOXA9_MEIS1:-0.635090651589;GTF2A1,2:-0.638738950202;TFAP4:-0.667494156167;GCM1,2:-0.706217846602;SOX{8,9,10}:-0.71056046552;ATF5_CREB3:-0.714489504404;ZFP161:-0.71487313878;TP53:-0.726729419758;PITX1..3:-0.745555708466;TEAD1:-0.750287631556;POU2F1..3:-0.762100230793;GTF2I:-0.768774196924;EGR1..3:-0.783190602749;RREB1:-0.790275066201;LHX3,4:-0.797554392169;FOS_FOS{B,L1}_JUN{B,D}:-0.809207030445;PATZ1:-0.81047696821;TFAP2B:-0.821259576134;BACH2:-0.826868455091;ZNF238:-0.836260237543;OCT4_SOX2{dimer}:-0.850590631607;PRDM1:-0.861142570426;BREu{core}:-0.863486706824;KLF4:-0.875776340762;TOPORS:-0.88553355275;NFE2L2:-0.896751293167;SOX5:-0.92334682833;POU5F1:-0.92894654221;ZNF148:-0.943594342133;POU3F1..4:-0.945861153116;PAX5:-0.957441851565;FOSL2:-0.957889020903;NFY{A,B,C}:-0.980852368787;ESR1:-0.992168219952;TFAP2{A,C}:-0.995177280221;ATF2:-1.00151870904;NFATC1..3:-1.00428612554;MYBL2:-1.00791810141;ESRRA:-1.01240312871;GFI1B:-1.02191251905;GFI1:-1.02629357181;HMX1:-1.04252605078;LEF1_TCF7_TCF7L1,2:-1.05420612686;AHR_ARNT_ARNT2:-1.05673893204;TBX4,5:-1.06116839425;ELK1,4_GABP{A,B1}:-1.09455307427;ZBTB6:-1.14666550357;GZF1:-1.17041838293;NR3C1:-1.17474575855;PRRX1,2:-1.20116986782;SPZ1:-1.21628413378;SRF:-1.21773027025;TFDP1:-1.3086258572;CDC5L:-1.33480686145;E2F1..5:-1.33800357631;IKZF1:-1.35793441118;GATA4:-1.3682301698;POU1F1:-1.38955795321;ATF4:-1.39420279749;RFX1:-1.3957727093;NRF1:-1.39866370415;JUN:-1.4143409126;FOXO1,3,4:-1.42485180086;CREB1:-1.4277968685;SOX17:-1.43732530083;MYB:-1.44333820843;XCPE1{core}:-1.44636086224;HBP1_HMGB_SSRP1_UBTF:-1.54096540199;NKX6-1,2:-1.56615881915;RFX2..5_RFXANK_RFXAP:-1.57394093522;NANOG{mouse}:-1.59001671872;ZIC1..3:-1.60032594321;NKX2-3_NKX2-5:-1.60825442786;MZF1:-1.6990672721;HSF1,2:-1.7610812492;NKX3-1:-1.84837146953;SOX2:-1.8648003746;ZNF384:-1.87171673586;HOX{A6,A7,B6,B7}:-1.94567448692;NANOG:-1.95433601362;XBP1:-2.00779966803;PAX8:-2.53869878951 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11603-120I1;search_select_hide=table117:FF:11603-120I1 | |||
}} | }} | ||
Latest revision as of 18:11, 4 June 2020
| Name: | Hepatocyte, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12349 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12349
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12349
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0426 |
| 10 | 10 | 0.204 |
| 100 | 100 | 0.228 |
| 101 | 101 | 0.998 |
| 102 | 102 | 0.265 |
| 103 | 103 | 0.147 |
| 104 | 104 | 0.77 |
| 105 | 105 | 0.377 |
| 106 | 106 | 0.00558 |
| 107 | 107 | 0.0172 |
| 108 | 108 | 0.392 |
| 109 | 109 | 0.185 |
| 11 | 11 | 0.167 |
| 110 | 110 | 0.237 |
| 111 | 111 | 0.179 |
| 112 | 112 | 0.0119 |
| 113 | 113 | 0.229 |
| 114 | 114 | 0.023 |
| 115 | 115 | 0.726 |
| 116 | 116 | 0.237 |
| 117 | 117 | 0.36 |
| 118 | 118 | 0.375 |
| 119 | 119 | 0.0182 |
| 12 | 12 | 0.503 |
| 120 | 120 | 0.96 |
| 121 | 121 | 0.159 |
| 122 | 122 | 0.527 |
| 123 | 123 | 0.764 |
| 124 | 124 | 0.0444 |
| 125 | 125 | 0.298 |
| 126 | 126 | 0.218 |
| 127 | 127 | 0.72 |
| 128 | 128 | 0.0493 |
| 129 | 129 | 0.202 |
| 13 | 13 | 0.106 |
| 130 | 130 | 0.0686 |
| 131 | 131 | 0.857 |
| 132 | 132 | 0.447 |
| 133 | 133 | 0.688 |
| 134 | 134 | 0.737 |
| 135 | 135 | 0.393 |
| 136 | 136 | 0.748 |
| 137 | 137 | 0.765 |
| 138 | 138 | 0.201 |
| 139 | 139 | 0.316 |
| 14 | 14 | 0.8 |
| 140 | 140 | 0.221 |
| 141 | 141 | 0.0697 |
| 142 | 142 | 0.202 |
| 143 | 143 | 0.359 |
| 144 | 144 | 0.749 |
| 145 | 145 | 0.129 |
| 146 | 146 | 0.161 |
| 147 | 147 | 0.655 |
| 148 | 148 | 0.0244 |
| 149 | 149 | 0.0612 |
| 15 | 15 | 0.0987 |
| 150 | 150 | 0.479 |
| 151 | 151 | 0.204 |
| 152 | 152 | 0.258 |
| 153 | 153 | 0.818 |
| 154 | 154 | 0.537 |
| 155 | 155 | 0.0602 |
| 156 | 156 | 0.942 |
| 157 | 157 | 0.892 |
| 158 | 158 | 0.883 |
| 159 | 159 | 0.43 |
| 16 | 16 | 0.256 |
| 160 | 160 | 0.208 |
| 161 | 161 | 0.627 |
| 162 | 162 | 0.41 |
| 163 | 163 | 0.72 |
| 164 | 164 | 0.244 |
| 165 | 165 | 0.0301 |
| 166 | 166 | 0.808 |
| 167 | 167 | 0.111 |
| 168 | 168 | 0.742 |
| 169 | 169 | 4.91825e-4 |
| 17 | 17 | 0.232 |
| 18 | 18 | 0.243 |
| 19 | 19 | 0.0732 |
| 2 | 2 | 0.529 |
| 20 | 20 | 0.998 |
| 21 | 21 | 0.627 |
| 22 | 22 | 0.132 |
| 23 | 23 | 0.109 |
| 24 | 24 | 0.873 |
| 25 | 25 | 0.948 |
| 26 | 26 | 0.0285 |
| 27 | 27 | 0.42 |
| 28 | 28 | 0.866 |
| 29 | 29 | 0.42 |
| 3 | 3 | 0.219 |
| 30 | 30 | 0.948 |
| 31 | 31 | 0.352 |
| 32 | 32 | 0.399 |
| 33 | 33 | 0.346 |
| 34 | 34 | 0.568 |
| 35 | 35 | 0.0824 |
| 36 | 36 | 0.0536 |
| 37 | 37 | 0.216 |
| 38 | 38 | 0.277 |
| 39 | 39 | 0.329 |
| 4 | 4 | 0.301 |
| 40 | 40 | 0.0712 |
| 41 | 41 | 0.34 |
| 42 | 42 | 0.541 |
| 43 | 43 | 0.123 |
| 44 | 44 | 1.71914e-5 |
| 45 | 45 | 0.474 |
| 46 | 46 | 0.0997 |
| 47 | 47 | 0.332 |
| 48 | 48 | 0.262 |
| 49 | 49 | 0.123 |
| 5 | 5 | 0.225 |
| 50 | 50 | 0.458 |
| 51 | 51 | 0.618 |
| 52 | 52 | 0.105 |
| 53 | 53 | 0.963 |
| 54 | 54 | 0.377 |
| 55 | 55 | 0.706 |
| 56 | 56 | 0.621 |
| 57 | 57 | 0.486 |
| 58 | 58 | 0.339 |
| 59 | 59 | 0.0898 |
| 6 | 6 | 0.789 |
| 60 | 60 | 0.0368 |
| 61 | 61 | 0.412 |
| 62 | 62 | 0.177 |
| 63 | 63 | 0.111 |
| 64 | 64 | 0.432 |
| 65 | 65 | 0.0964 |
| 66 | 66 | 0.463 |
| 67 | 67 | 0.237 |
| 68 | 68 | 0.644 |
| 69 | 69 | 0.533 |
| 7 | 7 | 0.113 |
| 70 | 70 | 0.0767 |
| 71 | 71 | 0.0665 |
| 72 | 72 | 0.595 |
| 73 | 73 | 0.164 |
| 74 | 74 | 0.819 |
| 75 | 75 | 0.133 |
| 76 | 76 | 0.943 |
| 77 | 77 | 0.0536 |
| 78 | 78 | 0.0707 |
| 79 | 79 | 0.336 |
| 8 | 8 | 0.0478 |
| 80 | 80 | 0.673 |
| 81 | 81 | 0.256 |
| 82 | 82 | 0.166 |
| 83 | 83 | 0.608 |
| 84 | 84 | 0.301 |
| 85 | 85 | 0.0203 |
| 86 | 86 | 0.272 |
| 87 | 87 | 0.924 |
| 88 | 88 | 0.509 |
| 89 | 89 | 0.0869 |
| 9 | 9 | 0.964 |
| 90 | 90 | 0.0628 |
| 91 | 91 | 0.184 |
| 92 | 92 | 0.103 |
| 93 | 93 | 0.417 |
| 94 | 94 | 0.841 |
| 95 | 95 | 0.616 |
| 96 | 96 | 0.189 |
| 97 | 97 | 0.57 |
| 98 | 98 | 0.403 |
| 99 | 99 | 0.0548 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12349
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000078 human hepatocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
