FF:11621-122B1: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	Smooth Muscle Cells - Umbilical Vein, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12569
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical vein
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	6757
catalog number	SC8025
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004772

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12569		CAGE		DRX008511		DRR009383

Accession ID Hg19

Library id		BAM		CTSS
CNhs12569		DRZ000808		DRZ002193

Accession ID Hg38

Library id		BAM		CTSS
CNhs12569		DRZ012158		DRZ013543

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.199
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.153
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.208
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.201
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.079
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.197
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.508
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0407
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.252
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.134
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.185
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.174
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.287
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.012
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.699
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.112
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.669
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.273
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0919
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0407
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.112
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.434
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0407
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.885
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.472
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.513
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12569

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.846
MA0003.1	MA0003.1	0.227
MA0004.1	MA0004.1	0.149
MA0006.1	MA0006.1	0.068
MA0007.1	MA0007.1	0.227
MA0009.1	MA0009.1	0.359
MA0014.1	MA0014.1	0.74
MA0017.1	MA0017.1	0.414
MA0018.2	MA0018.2	6.37147e-5
MA0019.1	MA0019.1	0.265
MA0024.1	MA0024.1	5.57411e-6
MA0025.1	MA0025.1	0.0247
MA0027.1	MA0027.1	0.919
MA0028.1	MA0028.1	0.798
MA0029.1	MA0029.1	0.434
MA0030.1	MA0030.1	0.0135
MA0031.1	MA0031.1	0.0502
MA0035.2	MA0035.2	0.192
MA0038.1	MA0038.1	0.235
MA0039.2	MA0039.2	0.993
MA0040.1	MA0040.1	0.593
MA0041.1	MA0041.1	0.65
MA0042.1	MA0042.1	0.621
MA0043.1	MA0043.1	0.0573
MA0046.1	MA0046.1	0.594
MA0047.2	MA0047.2	0.24
MA0048.1	MA0048.1	0.0946
MA0050.1	MA0050.1	1.62217e-7
MA0051.1	MA0051.1	0.00816
MA0052.1	MA0052.1	0.0581
MA0055.1	MA0055.1	0.112
MA0057.1	MA0057.1	0.851
MA0058.1	MA0058.1	0.065
MA0059.1	MA0059.1	0.56
MA0060.1	MA0060.1	0.615
MA0061.1	MA0061.1	0.831
MA0062.2	MA0062.2	2.3094e-4
MA0065.2	MA0065.2	0.3
MA0066.1	MA0066.1	0.317
MA0067.1	MA0067.1	1.65124e-4
MA0068.1	MA0068.1	0.894
MA0069.1	MA0069.1	0.63
MA0070.1	MA0070.1	0.344
MA0071.1	MA0071.1	0.167
MA0072.1	MA0072.1	0.875
MA0073.1	MA0073.1	0.412
MA0074.1	MA0074.1	0.839
MA0076.1	MA0076.1	0.0606
MA0077.1	MA0077.1	0.79
MA0078.1	MA0078.1	0.588
MA0079.2	MA0079.2	0.686
MA0080.2	MA0080.2	7.0633e-9
MA0081.1	MA0081.1	0.00972
MA0083.1	MA0083.1	0.00325
MA0084.1	MA0084.1	0.18
MA0087.1	MA0087.1	0.546
MA0088.1	MA0088.1	0.251
MA0090.1	MA0090.1	4.26545e-5
MA0091.1	MA0091.1	0.0435
MA0092.1	MA0092.1	0.0668
MA0093.1	MA0093.1	0.146
MA0099.2	MA0099.2	0.794
MA0100.1	MA0100.1	0.855
MA0101.1	MA0101.1	0.654
MA0102.2	MA0102.2	0.407
MA0103.1	MA0103.1	0.0699
MA0104.2	MA0104.2	0.39
MA0105.1	MA0105.1	0.257
MA0106.1	MA0106.1	0.0186
MA0107.1	MA0107.1	0.735
MA0108.2	MA0108.2	0.0208
MA0111.1	MA0111.1	0.732
MA0112.2	MA0112.2	0.0168
MA0113.1	MA0113.1	0.0362
MA0114.1	MA0114.1	0.215
MA0115.1	MA0115.1	0.152
MA0116.1	MA0116.1	0.484
MA0117.1	MA0117.1	0.853
MA0119.1	MA0119.1	0.117
MA0122.1	MA0122.1	0.658
MA0124.1	MA0124.1	0.372
MA0125.1	MA0125.1	0.984
MA0131.1	MA0131.1	0.342
MA0135.1	MA0135.1	0.193
MA0136.1	MA0136.1	4.72439e-8
MA0137.2	MA0137.2	0.266
MA0138.2	MA0138.2	0.744
MA0139.1	MA0139.1	0.946
MA0140.1	MA0140.1	0.134
MA0141.1	MA0141.1	0.642
MA0142.1	MA0142.1	0.601
MA0143.1	MA0143.1	0.613
MA0144.1	MA0144.1	0.634
MA0145.1	MA0145.1	0.184
MA0146.1	MA0146.1	0.401
MA0147.1	MA0147.1	0.446
MA0148.1	MA0148.1	0.946
MA0149.1	MA0149.1	0.764
MA0150.1	MA0150.1	0.137
MA0152.1	MA0152.1	0.115
MA0153.1	MA0153.1	0.554
MA0154.1	MA0154.1	0.284
MA0155.1	MA0155.1	0.546
MA0156.1	MA0156.1	4.64455e-5
MA0157.1	MA0157.1	0.194
MA0159.1	MA0159.1	0.913
MA0160.1	MA0160.1	0.599
MA0162.1	MA0162.1	0.0404
MA0163.1	MA0163.1	0.00655
MA0164.1	MA0164.1	0.845
MA0258.1	MA0258.1	0.73
MA0259.1	MA0259.1	0.284

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12569

Novel motif	Logo	P-value
1	1	0.281
10	10	0.602
100	100	0.367
101	101	0.833
102	102	0.115
103	103	0.304
104	104	0.376
105	105	0.409
106	106	0.0901
107	107	0.00883
108	108	0.372
109	109	0.152
11	11	0.287
110	110	0.201
111	111	0.976
112	112	0.38
113	113	0.964
114	114	0.478
115	115	0.979
116	116	0.0357
117	117	0.975
118	118	0.358
119	119	0.983
12	12	0.555
120	120	0.425
121	121	0.963
122	122	0.424
123	123	0.00815
124	124	0.913
125	125	0.335
126	126	0.774
127	127	0.265
128	128	0.183
129	129	0.863
13	13	0.794
130	130	0.302
131	131	0.874
132	132	0.513
133	133	0.267
134	134	0.263
135	135	0.821
136	136	0.931
137	137	0.00769
138	138	0.712
139	139	0.798
14	14	0.414
140	140	0.368
141	141	0.622
142	142	0.691
143	143	0.126
144	144	0.274
145	145	0.59
146	146	0.124
147	147	0.113
148	148	0.906
149	149	0.0508
15	15	0.663
150	150	0.339
151	151	0.462
152	152	0.021
153	153	0.567
154	154	0.715
155	155	0.0655
156	156	0.636
157	157	0.326
158	158	0.0946
159	159	0.61
16	16	0.0409
160	160	0.136
161	161	0.776
162	162	0.648
163	163	0.453
164	164	0.252
165	165	0.231
166	166	0.0615
167	167	0.689
168	168	0.491
169	169	0.0904
17	17	0.182
18	18	0.0683
19	19	0.0448
2	2	0.381
20	20	0.743
21	21	0.309
22	22	0.204
23	23	0.653
24	24	0.502
25	25	0.222
26	26	0.513
27	27	0.516
28	28	0.383
29	29	0.926
3	3	0.443
30	30	0.342
31	31	0.197
32	32	2.66187e-8
33	33	0.281
34	34	0.581
35	35	0.748
36	36	0.638
37	37	0.0295
38	38	0.736
39	39	0.325
4	4	0.724
40	40	0.105
41	41	0.366
42	42	0.916
43	43	0.345
44	44	0.707
45	45	0.476
46	46	0.336
47	47	0.851
48	48	0.351
49	49	0.3
5	5	0.575
50	50	0.404
51	51	0.29
52	52	0.664
53	53	0.472
54	54	0.517
55	55	0.377
56	56	0.694
57	57	0.548
58	58	0.171
59	59	0.206
6	6	0.813
60	60	0.988
61	61	0.324
62	62	0.292
63	63	0.197
64	64	0.669
65	65	0.625
66	66	0.381
67	67	0.637
68	68	0.83
69	69	0.964
7	7	0.82
70	70	0.587
71	71	0.541
72	72	0.694
73	73	0.0332
74	74	0.792
75	75	0.931
76	76	0.564
77	77	0.103
78	78	0.759
79	79	0.0254
8	8	0.0705
80	80	0.283
81	81	0.734
82	82	0.972
83	83	0.288
84	84	0.311
85	85	0.14
86	86	0.821
87	87	0.203
88	88	0.369
89	89	0.185
9	9	0.71
90	90	0.625
91	91	0.479
92	92	0.15
93	93	0.8
94	94	0.131
95	95	0.0809
96	96	0.913
97	97	0.708
98	98	0.445
99	99	5.89335e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12569

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000177 human smooth muscle cell of umbilical vein sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0001638,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0002036,UBERON:0002385,UBERON:0001981,UBERON:0003920,UBERON:0002049,UBERON:0000486,UBERON:0007500,UBERON:0003104,UBERON:0000914,UBERON:0005256,UBERON:0006598,UBERON:0007798,UBERON:0001015,UBERON:0002532,UBERON:0002066,UBERON:0002329,UBERON:0002204,UBERON:0004535,UBERON:0000383,UBERON:0004537,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0004582,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0003082,UBERON:0004872,UBERON:0006965,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00004772
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000359,CL:0000222,CL:0002588,CL:0000355,CL:0000514
+|accession_numbers=CAGE;DRX008511;DRR009383;DRZ000808;DRZ002193;DRZ012158;DRZ013543
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000177
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.91!80.66!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.75!54.72!HOXC5;;chr4:111544219..111544240,-!p1@PITX2!1.50!30.95!PITX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.49!29.87!SEBOX;;chr7:35293685..35293718,-!p1@TBX20!1.48!29.08!TBX20;;chr12:54402745..54402788,+!p1@HOXC8!1.47!28.79!HOXC8;;chr4:111558135..111558198,-!p2@PITX2!1.44!26.82!PITX2;;chr11:61520075..61520136,+!p1@C11orf9!1.37!46.57!C11orf9;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!108.86!CREB3L1;;chr7:27224795..27224840,-!p2@HOXA11!1.32!19.75!HOXA11;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.45!HIF3A;;chr2:176969228..176969260,+!p1@HOXD11!1.26!17.39!HOXD11;;chr7:19157248..19157268,-!p1@TWIST1!1.25!46.18!TWIST1;;chr7:27224842..27224872,-!p1@HOXA11!1.25!16.60!HOXA11;;chr4:174450089..174450153,-!p2@HAND2!1.20!15.03!HAND2;;chr12:54378923..54378966,+!p1@HOXC10!1.15!13.07!HOXC10;;chr18:19749386..19749404,+!p2@GATA6!1.14!18.18!GATA6;;chr5:134369905..134369972,-!p1@PITX1!1.11!18.37!PITX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.10!19.85!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.08!12.77!BNC1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.81!HOXC9;;chr12:66218598..66218645,+!p2@HMGA2!1.05!47.75!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.03!26.23!HMGA2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.03!9.82!SEBOX;;chr7:26191809..26191890,+!p1@NFE2L3!1.00!45.00!NFE2L3;;chr5:92918919..92918942,+!p1@NR2F1!1.00!40.97!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.99!28.39!GATA6;;chr12:54402790..54402805,+!p2@HOXC8!0.99!8.74!HOXC8;;chr12:66218836..66218888,+!p1@HMGA2!0.97!79.19!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.51!FOXF1;;chr9:77112244..77112262,+!p1@RORB!0.96!9.14!RORB;;chr4:174451350..174451363,-!p3@HAND2!0.96!8.15!HAND2;;chr16:86600426..86600441,+!p1@FOXC2!0.95!19.94!FOXC2;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.88!PITX1;;chr6:134210243..134210257,+!p1@TCF21!0.90!6.88!TCF21;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.78!HOXC5;;chr14:62162285..62162296,+!p3@HIF1A!0.87!34.88!HIF1A;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.39!KDM5D;;chr8:49833948..49833973,-!p2@SNAI2!0.86!41.95!SNAI2;;chr7:27239703..27239715,-!p1@HOXA13!0.85!6.09!HOXA13;;chr14:62162258..62162269,+!p2@HIF1A!0.84!61.01!HIF1A;;chr12:54402729..54402743,+!p3@HOXC8!0.84!5.99!HOXC8;;chr11:113930425..113930471,+!p1@ZBTB16!0.83!8.65!ZBTB16;;chr12:54379029..54379057,+!p2@HOXC10!0.83!5.80!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.70!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.60!HOXB6;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.22!ZFP106;;chr8:49833978..49833996,-!p1@SNAI2!0.78!112.00!SNAI2;;chr5:92919100..92919135,+!p3@NR2F1!0.78!6.19!NR2F1;;chr7:27213893..27213954,-!p1@HOXA10!0.78!5.01!HOXA10;;chr4:111544254..111544270,-!p3@PITX2!0.78!5.01!PITX2;;chr12:54380404..54380433,+!p3@HOXC10!0.77!4.91!HOXC10;;chr8:48650715..48650735,-!p1@CEBPD!0.76!669.57!CEBPD;;chr7:27205106..27205134,-!p2@HOXA9!0.76!4.81!HOXA9;;chr2:176969179..176969226,+!p2@HOXD11!0.76!4.81!HOXD11;;chr4:111558118..111558133,-!p5@PITX2!0.76!4.81!PITX2;;chr2:19558373..19558392,-!p1@OSR1!0.75!13.75!OSR1;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.89!MLLT11;;chr1:170633348..170633399,+!p2@PRRX1!0.71!5.89!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.03!HOXD8;;chr7:27196267..27196311,-!p1@HOXA7!0.70!4.03!HOXA7;;chr2:5832508..5832524,+!p1@SOX11!0.67!3.64!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.64!ZFY;;chr5:92918894..92918912,+!p2@NR2F1!0.66!13.36!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!0.66!12.48!TBX2;;chr12:66218212..66218244,+!p5@HMGA2!0.66!5.50!HMGA2;;chr5:92918956..92918969,+!p4@NR2F1!0.66!4.03!NR2F1;;chr12:54380036..54380091,+!p4@HOXC10!0.65!3.44!HOXC10;;chr15:57511609..57511651,+!p2@TCF12!0.64!6.09!TCF12;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.42!ARID5B;;chr9:35732647..35732678,+!p2@CREB3!0.63!21.03!CREB3;;chr21:30671690..30671762,+!p2@BACH1!0.63!12.87!BACH1;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.24!TWIST1;;chr7:27192185..27192209,-!p1@HOXA3!0.63!3.24!HOXA3;;chr14:62162224..62162254,+!p1@HIF1A!0.62!558.25!HIF1A;;chr19:46800289..46800327,+!p2@HIF3A!0.62!3.14!HIF3A;;chr1:158979872..158979898,+!p3@IFI16!0.61!11.00!IFI16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.61!3.34!GLIS1;;chr5:92918768..92918783,+!p8@NR2F1!0.61!3.05!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.60!16.01!FOXD1;;chr3:168864315..168864339,-!p2@MECOM!0.60!5.31!MECOM;;chr17:46132044..46132080,+!p4@NFE2L1!0.60!2.95!NFE2L1;;chr17:46703687..46703740,-!p1@HOXB9!0.60!2.95!HOXB9;;chr5:72744445..72744466,-!p2@FOXD1!0.59!5.31!FOXD1;;chr11:12696071..12696086,+!p3@TEAD1!0.59!4.03!TEAD1;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.85!MAFK;;chr7:27239740..27239759,-!p2@HOXA13!0.59!2.85!HOXA13;;chr6:108882109..108882173,+!p2@FOXO3!0.58!18.27!FOXO3;;chr16:8962202..8962222,-!p3@CARHSP1!0.58!5.60!CARHSP1;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.32!HOXB7;;chr17:59477275..59477286,+!p3@TBX2!0.58!3.93!TBX2;;chr17:357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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002588;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11621-122B1
-|is_a=EFO:0002091;;FF:0000002;;FF:0000177;;FF:0000210
+|is_a=EFO:0002091;;FF:0000177
+|is_obsolete=
+|library_id=CNhs12569
+|library_id_phase_based=2:CNhs12569
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11621
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11621
 |name=Smooth Muscle Cells - Umbilical Vein, donor2
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12569,LSID917,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=122
 |rna_catalog_number=SC8025
@@ Line 57: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.36780993400393e-232!GO:0005737;cytoplasm;5.77860512174952e-205!GO:0043226;organelle;4.58600185276997e-182!GO:0043229;intracellular organelle;1.10068607854964e-181!GO:0043231;intracellular membrane-bound organelle;2.96504338288332e-180!GO:0043227;membrane-bound organelle;5.34963038597809e-180!GO:0044444;cytoplasmic part;3.45253153576691e-155!GO:0044422;organelle part;2.50520258134408e-137!GO:0044446;intracellular organelle part;9.76094454789792e-136!GO:0032991;macromolecular complex;7.05275909981374e-93!GO:0044238;primary metabolic process;1.63311699721048e-87!GO:0030529;ribonucleoprotein complex;1.63311699721048e-87!GO:0044237;cellular metabolic process;1.48563765007946e-86!GO:0043170;macromolecule metabolic process;1.21545675035515e-77!GO:0005515;protein binding;1.52251429165066e-72!GO:0005739;mitochondrion;3.64391185134807e-72!GO:0043233;organelle lumen;7.03250348548735e-71!GO:0031974;membrane-enclosed lumen;7.03250348548735e-71!GO:0003723;RNA binding;8.82810732921573e-65!GO:0044428;nuclear part;3.42470565310747e-62!GO:0031090;organelle membrane;3.37235100313328e-58!GO:0005634;nucleus;1.10991392408113e-56!GO:0005840;ribosome;1.12069978601532e-56!GO:0019538;protein metabolic process;2.97257670862219e-54!GO:0006412;translation;9.25638021784238e-54!GO:0009058;biosynthetic process;1.90625559389275e-51!GO:0003735;structural constituent of ribosome;4.7287860879846e-50!GO:0044260;cellular macromolecule metabolic process;4.71515259330661e-49!GO:0044429;mitochondrial part;1.12621515862056e-48!GO:0044267;cellular protein metabolic process;3.36973324295041e-48!GO:0015031;protein transport;3.49897027509188e-46!GO:0016043;cellular component organization and biogenesis;8.69579154361735e-46!GO:0033036;macromolecule localization;1.03087546909984e-45!GO:0043234;protein complex;2.61031815590589e-45!GO:0009059;macromolecule biosynthetic process;4.05916553102284e-45!GO:0044249;cellular biosynthetic process;3.89534677841129e-44!GO:0006396;RNA processing;1.05165590020565e-43!GO:0045184;establishment of protein localization;4.08003568850157e-43!GO:0008104;protein localization;5.08424761474752e-43!GO:0033279;ribosomal subunit;5.52798230581532e-43!GO:0031967;organelle envelope;7.93119248081331e-42!GO:0031975;envelope;2.06913825112841e-41!GO:0005829;cytosol;7.36374871720868e-41!GO:0031981;nuclear lumen;4.39948825503244e-38!GO:0043283;biopolymer metabolic process;7.2566639716953e-38!GO:0010467;gene expression;1.5285624005146e-36!GO:0016071;mRNA metabolic process;7.9930233121469e-34!GO:0046907;intracellular transport;1.52242897444172e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.12299154424593e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.16759500154575e-32!GO:0065003;macromolecular complex assembly;2.00194828622447e-31!GO:0005740;mitochondrial envelope;2.0400582208069e-31!GO:0008380;RNA splicing;4.25881533291209e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.39732000086948e-30!GO:0031966;mitochondrial membrane;1.17620623136371e-29!GO:0006397;mRNA processing;2.16346174752416e-29!GO:0006886;intracellular protein transport;3.86781670475197e-29!GO:0019866;organelle inner membrane;2.078437152411e-28!GO:0022607;cellular component assembly;2.57027537905851e-28!GO:0006996;organelle organization and biogenesis;4.68965402391365e-27!GO:0005743;mitochondrial inner membrane;8.49942564477338e-27!GO:0044445;cytosolic part;3.45304676232404e-26!GO:0043228;non-membrane-bound organelle;1.09947257949505e-25!GO:0043232;intracellular non-membrane-bound organelle;1.09947257949505e-25!GO:0012505;endomembrane system;2.49320345033079e-25!GO:0005783;endoplasmic reticulum;3.52724253237482e-25!GO:0006457;protein folding;1.92184612364162e-24!GO:0005654;nucleoplasm;4.76928249897185e-23!GO:0006119;oxidative phosphorylation;1.34508017451553e-22!GO:0005681;spliceosome;1.73807931018591e-22!GO:0015935;small ribosomal subunit;3.49093825317492e-22!GO:0015934;large ribosomal subunit;8.60781632166797e-22!GO:0044455;mitochondrial membrane part;1.01087271077208e-21!GO:0031980;mitochondrial lumen;3.63765394611665e-21!GO:0005759;mitochondrial matrix;3.63765394611665e-21!GO:0051649;establishment of cellular localization;4.36726073449761e-21!GO:0051641;cellular localization;4.84433274250905e-21!GO:0044432;endoplasmic reticulum part;2.34781908374638e-20!GO:0048770;pigment granule;2.60592214132278e-20!GO:0042470;melanosome;2.60592214132278e-20!GO:0022618;protein-RNA complex assembly;3.24794433449489e-20!GO:0016462;pyrophosphatase activity;6.9355264621959e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.68838178237631e-20!GO:0005794;Golgi apparatus;1.19265824825707e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.25794913378874e-19!GO:0044451;nucleoplasm part;9.4719130446496e-19!GO:0017111;nucleoside-triphosphatase activity;9.60736582379641e-19!GO:0000166;nucleotide binding;1.0200076894164e-18!GO:0005746;mitochondrial respiratory chain;1.55014914798847e-17!GO:0016874;ligase activity;1.80999142064527e-17!GO:0008135;translation factor activity, nucleic acid binding;1.80999142064527e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.88852360787847e-17!GO:0003676;nucleic acid binding;5.34901101164278e-17!GO:0006259;DNA metabolic process;5.3751769762082e-17!GO:0051186;cofactor metabolic process;1.53503494698641e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.90176042141543e-16!GO:0006512;ubiquitin cycle;1.92045180010786e-16!GO:0044265;cellular macromolecule catabolic process;2.78288662690048e-16!GO:0005730;nucleolus;3.07944511209695e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.42118984469156e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.35902853204991e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.49301637543426e-16!GO:0019941;modification-dependent protein catabolic process;1.31754185658913e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.31754185658913e-15!GO:0044257;cellular protein catabolic process;1.68399759066029e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.11171458145864e-15!GO:0044248;cellular catabolic process;3.04100688465572e-15!GO:0051082;unfolded protein binding;3.48317854474179e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.06601828772993e-15!GO:0003954;NADH dehydrogenase activity;4.06601828772993e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.06601828772993e-15!GO:0005761;mitochondrial ribosome;4.92286481509199e-15!GO:0000313;organellar ribosome;4.92286481509199e-15!GO:0043285;biopolymer catabolic process;6.62141436850789e-15!GO:0048193;Golgi vesicle transport;6.89532616925399e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.27611661592127e-14!GO:0009057;macromolecule catabolic process;3.56236747684502e-14!GO:0016192;vesicle-mediated transport;5.3638467431469e-14!GO:0003743;translation initiation factor activity;6.2343729726287e-14!GO:0006413;translational initiation;7.56879551817279e-14!GO:0043412;biopolymer modification;7.56879551817279e-14!GO:0008134;transcription factor binding;1.02650716839898e-13!GO:0005789;endoplasmic reticulum membrane;1.04879897536506e-13!GO:0032553;ribonucleotide binding;1.11976434380486e-13!GO:0032555;purine ribonucleotide binding;1.11976434380486e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.43675720921724e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.54754608384282e-13!GO:0042773;ATP synthesis coupled electron transport;1.54754608384282e-13!GO:0006605;protein targeting;1.8071380614726e-13!GO:0016070;RNA metabolic process;2.42525449156775e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.42525449156775e-13!GO:0045271;respiratory chain complex I;2.42525449156775e-13!GO:0005747;mitochondrial respiratory chain complex I;2.42525449156775e-13!GO:0030163;protein catabolic process;2.45759978994021e-13!GO:0017076;purine nucleotide binding;2.95031063008898e-13!GO:0006732;coenzyme metabolic process;3.4182648319933e-13!GO:0042254;ribosome biogenesis and assembly;5.18995186181855e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.96270622585184e-13!GO:0007049;cell cycle;8.22182153485902e-13!GO:0005793;ER-Golgi intermediate compartment;1.04259777429074e-12!GO:0006464;protein modification process;1.91676193259623e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.55580383142771e-11!GO:0000375;RNA splicing, via transesterification reactions;1.55580383142771e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.55580383142771e-11!GO:0005635;nuclear envelope;2.75341785134708e-11!GO:0006446;regulation of translational initiation;4.07905585406412e-11!GO:0009055;electron carrier activity;5.84000511662352e-11!GO:0031965;nuclear membrane;8.38103181371188e-11!GO:0009259;ribonucleotide metabolic process;9.12232189410944e-11!GO:0006163;purine nucleotide metabolic process;1.26515878191496e-10!GO:0003924;GTPase activity;3.20280778657354e-10!GO:0012501;programmed cell death;3.5770036651756e-10!GO:0009150;purine ribonucleotide metabolic process;3.64897527336664e-10!GO:0008565;protein transporter activity;3.97529806069705e-10!GO:0006164;purine nucleotide biosynthetic process;6.16628942592955e-10!GO:0006915;apoptosis;8.74852349687366e-10!GO:0044453;nuclear membrane part;8.8226955093683e-10!GO:0006974;response to DNA damage stimulus;8.92405006555187e-10!GO:0006399;tRNA metabolic process;9.17408808970378e-10!GO:0005524;ATP binding;9.89789271379983e-10!GO:0043687;post-translational protein modification;1.08773492177264e-09!GO:0009260;ribonucleotide biosynthetic process;1.1605015582214e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.20900040732809e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.68650801585361e-09!GO:0044431;Golgi apparatus part;1.78032688963977e-09!GO:0016604;nuclear body;1.78992657653609e-09!GO:0032559;adenyl ribonucleotide binding;1.81558996134938e-09!GO:0005788;endoplasmic reticulum lumen;1.87829460251506e-09!GO:0009060;aerobic respiration;3.29055975426658e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.29055975426658e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.59947723602431e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.11539299324538e-09!GO:0008219;cell death;5.40097736184248e-09!GO:0016265;death;5.40097736184248e-09!GO:0022402;cell cycle process;5.53375794347076e-09!GO:0030554;adenyl nucleotide binding;5.54312403471571e-09!GO:0009056;catabolic process;6.62163789040409e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.19817220119831e-09!GO:0009144;purine nucleoside triphosphate metabolic process;8.19817220119831e-09!GO:0009141;nucleoside triphosphate metabolic process;9.47492609250167e-09!GO:0006461;protein complex assembly;9.58043236702588e-09!GO:0000278;mitotic cell cycle;1.04638087344941e-08!GO:0003712;transcription cofactor activity;1.223982070195e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.31310057266177e-08!GO:0008639;small protein conjugating enzyme activity;1.43619046450482e-08!GO:0005768;endosome;1.65425311083186e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.69733053047127e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.69733053047127e-08!GO:0045333;cellular respiration;1.71034143733711e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.89742431408335e-08!GO:0019787;small conjugating protein ligase activity;1.89742431408335e-08!GO:0042623;ATPase activity, coupled;2.10903097596082e-08!GO:0015986;ATP synthesis coupled proton transport;2.10903097596082e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.10903097596082e-08!GO:0006913;nucleocytoplasmic transport;2.1843947899794e-08!GO:0006364;rRNA processing;2.18586887355673e-08!GO:0030120;vesicle coat;2.50571504863521e-08!GO:0030662;coated vesicle membrane;2.50571504863521e-08!GO:0004842;ubiquitin-protein ligase activity;2.52009507611608e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.72275886080541e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.72275886080541e-08!GO:0051246;regulation of protein metabolic process;2.95774566726303e-08!GO:0016853;isomerase activity;3.47459671476509e-08!GO:0016887;ATPase activity;3.78535553145755e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.98894898306604e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.98894898306604e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.98894898306604e-08!GO:0016072;rRNA metabolic process;3.99543883575888e-08!GO:0051169;nuclear transport;4.0639629478268e-08!GO:0048523;negative regulation of cellular process;4.14626927914237e-08!GO:0043038;amino acid activation;4.66919165289888e-08!GO:0006418;tRNA aminoacylation for protein translation;4.66919165289888e-08!GO:0043039;tRNA aminoacylation;4.66919165289888e-08!GO:0065002;intracellular protein transport across a membrane;4.95586092202453e-08!GO:0051188;cofactor biosynthetic process;6.35647781024634e-08!GO:0048475;coated membrane;6.36034989909295e-08!GO:0030117;membrane coat;6.36034989909295e-08!GO:0006281;DNA repair;6.59822419587066e-08!GO:0019829;cation-transporting ATPase activity;8.02128641103138e-08!GO:0006099;tricarboxylic acid cycle;8.08424612928804e-08!GO:0046356;acetyl-CoA catabolic process;8.08424612928804e-08!GO:0031988;membrane-bound vesicle;9.18693372671057e-08!GO:0016023;cytoplasmic membrane-bound vesicle;9.52146101502963e-08!GO:0007005;mitochondrion organization and biogenesis;1.14313562281411e-07!GO:0046034;ATP metabolic process;1.23525324093001e-07!GO:0016607;nuclear speck;1.39173996546105e-07!GO:0051187;cofactor catabolic process;1.41253376214643e-07!GO:0016740;transferase activity;1.41253376214643e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.47791849605456e-07!GO:0005643;nuclear pore;1.59712537905757e-07!GO:0009109;coenzyme catabolic process;1.60422327771286e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.7976657618744e-07!GO:0017038;protein import;1.87879121768172e-07!GO:0005525;GTP binding;2.01848555225266e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.12992729519254e-07!GO:0000139;Golgi membrane;2.12992729519254e-07!GO:0009117;nucleotide metabolic process;2.19360428649549e-07!GO:0006084;acetyl-CoA metabolic process;2.21546633970205e-07!GO:0016881;acid-amino acid ligase activity;2.27613884290551e-07!GO:0008026;ATP-dependent helicase activity;2.52574465507491e-07!GO:0065004;protein-DNA complex assembly;2.59800450270876e-07!GO:0016491;oxidoreductase activity;2.81684491465063e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.3081448541048e-07!GO:0016859;cis-trans isomerase activity;3.68455244892468e-07!GO:0006754;ATP biosynthetic process;3.70527958481966e-07!GO:0006753;nucleoside phosphate metabolic process;3.70527958481966e-07!GO:0006323;DNA packaging;4.27024916310876e-07!GO:0051276;chromosome organization and biogenesis;4.40651617333067e-07!GO:0031982;vesicle;4.64428359449767e-07!GO:0009719;response to endogenous stimulus;5.6437811949877e-07!GO:0031410;cytoplasmic vesicle;5.76946214810631e-07!GO:0005798;Golgi-associated vesicle;6.85412961352553e-07!GO:0008654;phospholipid biosynthetic process;7.59175323605081e-07!GO:0004386;helicase activity;8.08072713298323e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.56414238504745e-07!GO:0006366;transcription from RNA polymerase II promoter;8.82616968554861e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.0790420671575e-06!GO:0048519;negative regulation of biological process;1.42050115513361e-06!GO:0045259;proton-transporting ATP synthase complex;1.79446281981113e-06!GO:0043067;regulation of programmed cell death;1.98457046507253e-06!GO:0046930;pore complex;1.98457046507253e-06!GO:0032561;guanyl ribonucleotide binding;2.13270776705037e-06!GO:0019001;guanyl nucleotide binding;2.13270776705037e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.21833028016385e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.21833028016385e-06!GO:0042981;regulation of apoptosis;2.52488433811712e-06!GO:0006752;group transfer coenzyme metabolic process;2.73079349522748e-06!GO:0000074;regulation of progression through cell cycle;2.94640129076733e-06!GO:0050794;regulation of cellular process;3.11130578519312e-06!GO:0050657;nucleic acid transport;3.27761247514952e-06!GO:0051236;establishment of RNA localization;3.27761247514952e-06!GO:0050658;RNA transport;3.27761247514952e-06!GO:0045454;cell redox homeostasis;3.74471732070747e-06!GO:0051726;regulation of cell cycle;3.78938064672556e-06!GO:0006403;RNA localization;3.88476448214672e-06!GO:0009108;coenzyme biosynthetic process;4.2231394336744e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.44181307885267e-06!GO:0032446;protein modification by small protein conjugation;4.5985444747841e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.61757808933576e-06!GO:0006333;chromatin assembly or disassembly;5.35826988186556e-06!GO:0043069;negative regulation of programmed cell death;5.62473592830329e-06!GO:0005694;chromosome;5.72945719883594e-06!GO:0006613;cotranslational protein targeting to membrane;5.91449744429001e-06!GO:0006916;anti-apoptosis;6.39279259186379e-06!GO:0016567;protein ubiquitination;6.97556540794518e-06!GO:0030133;transport vesicle;7.39821280053165e-06!GO:0005770;late endosome;9.63371316990158e-06!GO:0016787;hydrolase activity;9.92777014964449e-06!GO:0043066;negative regulation of apoptosis;1.03130103233909e-05!GO:0005667;transcription factor complex;1.11549477170605e-05!GO:0044440;endosomal part;1.1485465391316e-05!GO:0010008;endosome membrane;1.1485465391316e-05!GO:0043566;structure-specific DNA binding;1.17548397888848e-05!GO:0022403;cell cycle phase;1.23484859410491e-05!GO:0003697;single-stranded DNA binding;1.27323683930158e-05!GO:0000245;spliceosome assembly;1.29070299232403e-05!GO:0004298;threonine endopeptidase activity;1.39800669933504e-05!GO:0005762;mitochondrial large ribosomal subunit;1.39800669933504e-05!GO:0000315;organellar large ribosomal subunit;1.39800669933504e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.41727166038369e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.72976632110284e-05!GO:0043623;cellular protein complex assembly;1.73148646618636e-05!GO:0003714;transcription corepressor activity;1.81840307670223e-05!GO:0051301;cell division;2.01705652726409e-05!GO:0031252;leading edge;2.09579533488559e-05!GO:0000151;ubiquitin ligase complex;2.47011384647156e-05!GO:0051789;response to protein stimulus;2.69939364180539e-05!GO:0006986;response to unfolded protein;2.69939364180539e-05!GO:0005905;coated pit;2.72886736309785e-05!GO:0006091;generation of precursor metabolites and energy;3.06494649888687e-05!GO:0005773;vacuole;3.07041767626833e-05!GO:0016126;sterol biosynthetic process;3.27078887759098e-05!GO:0006793;phosphorus metabolic process;3.39549270438712e-05!GO:0006796;phosphate metabolic process;3.39549270438712e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.39879384790968e-05!GO:0000087;M phase of mitotic cell cycle;3.42465846928213e-05!GO:0006260;DNA replication;3.54129000645349e-05!GO:0030867;rough endoplasmic reticulum membrane;3.74601049153083e-05!GO:0044427;chromosomal part;3.9933256081672e-05!GO:0031324;negative regulation of cellular metabolic process;4.28215165878329e-05!GO:0007067;mitosis;4.6767252821316e-05!GO:0019843;rRNA binding;4.98675292302627e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.00121524287487e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.26868778339053e-05!GO:0000785;chromatin;5.3125319164404e-05!GO:0006334;nucleosome assembly;5.38817862738417e-05!GO:0016310;phosphorylation;5.51095775644001e-05!GO:0031968;organelle outer membrane;6.0017942849467e-05!GO:0043021;ribonucleoprotein binding;6.00312839940583e-05!GO:0005769;early endosome;6.0489359366699e-05!GO:0016564;transcription repressor activity;6.14485078989477e-05!GO:0016779;nucleotidyltransferase activity;6.78301068305319e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.0824426265191e-05!GO:0019867;outer membrane;7.43534971126744e-05!GO:0003724;RNA helicase activity;7.91772313359144e-05!GO:0051028;mRNA transport;8.3948737784391e-05!GO:0015630;microtubule cytoskeleton;9.75902859640186e-05!GO:0051170;nuclear import;0.000102823289221037!GO:0008610;lipid biosynthetic process;0.000115545707060478!GO:0005791;rough endoplasmic reticulum;0.000115727005540067!GO:0000314;organellar small ribosomal subunit;0.000115727005540067!GO:0005763;mitochondrial small ribosomal subunit;0.000115727005540067!GO:0044262;cellular carbohydrate metabolic process;0.000116692471660152!GO:0051329;interphase of mitotic cell cycle;0.000122805294917851!GO:0050789;regulation of biological process;0.000128780820294164!GO:0031497;chromatin assembly;0.000129559425669007!GO:0030036;actin cytoskeleton organization and biogenesis;0.000130216129804354!GO:0016563;transcription activator activity;0.000139138480503994!GO:0046474;glycerophospholipid biosynthetic process;0.000147559427284763!GO:0008361;regulation of cell size;0.000151982836190703!GO:0006606;protein import into nucleus;0.000151982836190703!GO:0006612;protein targeting to membrane;0.00018042212802315!GO:0009892;negative regulation of metabolic process;0.000199402052532415!GO:0045786;negative regulation of progression through cell cycle;0.000208486908347963!GO:0005885;Arp2/3 protein complex;0.000234138703840113!GO:0003713;transcription coactivator activity;0.000238141606741181!GO:0016568;chromatin modification;0.000239072472700376!GO:0046467;membrane lipid biosynthetic process;0.000262266913765164!GO:0000323;lytic vacuole;0.000263217592925305!GO:0005764;lysosome;0.000263217592925305!GO:0003899;DNA-directed RNA polymerase activity;0.000272707112274332!GO:0016049;cell growth;0.000273046610651422!GO:0008250;oligosaccharyl transferase complex;0.00027313994890692!GO:0030663;COPI coated vesicle membrane;0.000284198152853564!GO:0030126;COPI vesicle coat;0.000284198152853564!GO:0005048;signal sequence binding;0.000297930585906737!GO:0019899;enzyme binding;0.000299515110921193!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000300429381660631!GO:0006695;cholesterol biosynthetic process;0.000303160261912261!GO:0004576;oligosaccharyl transferase activity;0.000303160261912261!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000328230240107741!GO:0005741;mitochondrial outer membrane;0.000336373370329678!GO:0031072;heat shock protein binding;0.000339590703551824!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000342592398546375!GO:0009165;nucleotide biosynthetic process;0.000375619786877087!GO:0051325;interphase;0.000402067128852292!GO:0005813;centrosome;0.000418104791504824!GO:0030176;integral to endoplasmic reticulum membrane;0.000454927684545573!GO:0043681;protein import into mitochondrion;0.000504726828012606!GO:0018196;peptidyl-asparagine modification;0.000526628271636305!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000526628271636305!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000540520365837749!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000543179972294784!GO:0030137;COPI-coated vesicle;0.000571136631036587!GO:0006520;amino acid metabolic process;0.000584021998069206!GO:0006082;organic acid metabolic process;0.000606454428264269!GO:0043284;biopolymer biosynthetic process;0.000648062562686346!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000663673266490887!GO:0006626;protein targeting to mitochondrion;0.000691622307472946!GO:0019752;carboxylic acid metabolic process;0.000697087560657269!GO:0051920;peroxiredoxin activity;0.000745713502152017!GO:0051427;hormone receptor binding;0.000760377251500489!GO:0001558;regulation of cell growth;0.000793584280673457!GO:0030029;actin filament-based process;0.000803743246113763!GO:0048471;perinuclear region of cytoplasm;0.000818748526364195!GO:0006414;translational elongation;0.000866666680860951!GO:0007264;small GTPase mediated signal transduction;0.000878455528391914!GO:0042802;identical protein binding;0.000923468570605678!GO:0005815;microtubule organizing center;0.000923836043752072!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000926755020913608!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00102592987328359!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0010323156225791!GO:0030659;cytoplasmic vesicle membrane;0.00103255399141074!GO:0008186;RNA-dependent ATPase activity;0.00105676755896548!GO:0046489;phosphoinositide biosynthetic process;0.00108522452452551!GO:0007010;cytoskeleton organization and biogenesis;0.00111892245278644!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00118519714555814!GO:0015399;primary active transmembrane transporter activity;0.00118519714555814!GO:0016044;membrane organization and biogenesis;0.00120023009106752!GO:0006839;mitochondrial transport;0.00135164540005033!GO:0035257;nuclear hormone receptor binding;0.00141542953185446!GO:0048500;signal recognition particle;0.0014180743519979!GO:0006891;intra-Golgi vesicle-mediated transport;0.00143595172602541!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00146216067819795!GO:0007243;protein kinase cascade;0.00146967668548465!GO:0030658;transport vesicle membrane;0.00153012094047832!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00155862306320103!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00155862306320103!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00155862306320103!GO:0051252;regulation of RNA metabolic process;0.00160477430047143!GO:0006383;transcription from RNA polymerase III promoter;0.00181917791980243!GO:0008092;cytoskeletal protein binding;0.00190474467300079!GO:0016481;negative regulation of transcription;0.00194403327047762!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00194403327047762!GO:0046483;heterocycle metabolic process;0.00200873441330592!GO:0051087;chaperone binding;0.00201410176564551!GO:0016363;nuclear matrix;0.00201677921969168!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00204878460747215!GO:0007050;cell cycle arrest;0.00207034642753379!GO:0007006;mitochondrial membrane organization and biogenesis;0.00215561655345493!GO:0000279;M phase;0.00231484319842715!GO:0030134;ER to Golgi transport vesicle;0.00233086417651849!GO:0008033;tRNA processing;0.0023723971206554!GO:0000049;tRNA binding;0.00237947742192293!GO:0030118;clathrin coat;0.00246825697688279!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00252218733854939!GO:0008180;signalosome;0.00253950320639741!GO:0004004;ATP-dependent RNA helicase activity;0.00255477504211494!GO:0044452;nucleolar part;0.00258553456295622!GO:0044433;cytoplasmic vesicle part;0.0026301396245011!GO:0003729;mRNA binding;0.0026301396245011!GO:0043488;regulation of mRNA stability;0.00267267680449155!GO:0043487;regulation of RNA stability;0.00267267680449155!GO:0051168;nuclear export;0.0027845801316593!GO:0006740;NADPH regeneration;0.0029430436662401!GO:0006098;pentose-phosphate shunt;0.0029430436662401!GO:0008047;enzyme activator activity;0.00298508149779431!GO:0019222;regulation of metabolic process;0.00302540396719602!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0031088875329626!GO:0045047;protein targeting to ER;0.0031088875329626!GO:0030132;clathrin coat of coated pit;0.0031357978835655!GO:0006650;glycerophospholipid metabolic process;0.00330848582224896!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00331956726197387!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00331956726197387!GO:0008312;7S RNA binding;0.00340091526367532!GO:0030660;Golgi-associated vesicle membrane;0.00350408807173282!GO:0012506;vesicle membrane;0.00372602976460318!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00391790504304393!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00393642618376494!GO:0015992;proton transport;0.00398252950868055!GO:0030127;COPII vesicle coat;0.00398968480044289!GO:0012507;ER to Golgi transport vesicle membrane;0.00398968480044289!GO:0000059;protein import into nucleus, docking;0.00402667183067381!GO:0003746;translation elongation factor activity;0.00420510630110798!GO:0008652;amino acid biosynthetic process;0.0042324113180574!GO:0006818;hydrogen transport;0.00429617340026342!GO:0009112;nucleobase metabolic process;0.00429617340026342!GO:0048522;positive regulation of cellular process;0.00446436660382989!GO:0051287;NAD binding;0.00468143468472609!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00482585743064454!GO:0015002;heme-copper terminal oxidase activity;0.00482585743064454!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00482585743064454!GO:0004129;cytochrome-c oxidase activity;0.00482585743064454!GO:0006352;transcription initiation;0.00497949933179917!GO:0030880;RNA polymerase complex;0.00518533082613565!GO:0016408;C-acyltransferase activity;0.00518533082613565!GO:0004177;aminopeptidase activity;0.00520274548478813!GO:0003690;double-stranded DNA binding;0.0052447363133514!GO:0030145;manganese ion binding;0.00532992028658509!GO:0003711;transcription elongation regulator activity;0.00549855312368113!GO:0065009;regulation of a molecular function;0.00550334955106905!GO:0000082;G1/S transition of mitotic cell cycle;0.0055443023298459!GO:0031901;early endosome membrane;0.0056265569386677!GO:0048487;beta-tubulin binding;0.00568670777138612!GO:0006509;membrane protein ectodomain proteolysis;0.00571779073029797!GO:0033619;membrane protein proteolysis;0.00571779073029797!GO:0051128;regulation of cellular component organization and biogenesis;0.00579601582073315!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00681722328433871!GO:0015631;tubulin binding;0.00714357676136389!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00727840823204622!GO:0006402;mRNA catabolic process;0.00733157204056782!GO:0005869;dynactin complex;0.00735986661792341!GO:0045045;secretory pathway;0.00748229850632838!GO:0006807;nitrogen compound metabolic process;0.00754347327578118!GO:0003756;protein disulfide isomerase activity;0.007596963704145!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.007596963704145!GO:0008139;nuclear localization sequence binding;0.00762815811752392!GO:0008632;apoptotic program;0.00787403998388481!GO:0016272;prefoldin complex;0.00808030276540693!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00814840370596965!GO:0006497;protein amino acid lipidation;0.0083324089478577!GO:0022890;inorganic cation transmembrane transporter activity;0.00843644982696048!GO:0006595;polyamine metabolic process;0.00854630426918909!GO:0016197;endosome transport;0.0085713547308897!GO:0031301;integral to organelle membrane;0.00858630180133871!GO:0030521;androgen receptor signaling pathway;0.00891938862100848!GO:0030027;lamellipodium;0.00894964753484236!GO:0030384;phosphoinositide metabolic process;0.00902698634177741!GO:0043022;ribosome binding;0.00905713313045781!GO:0005862;muscle thin filament tropomyosin;0.00961798475402889!GO:0006519;amino acid and derivative metabolic process;0.00973999497039217!GO:0001726;ruffle;0.0100327669283193!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0103491744520768!GO:0005684;U2-dependent spliceosome;0.0105909097326646!GO:0017166;vinculin binding;0.0106454933228021!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0106454933228021!GO:0000428;DNA-directed RNA polymerase complex;0.0106454933228021!GO:0033673;negative regulation of kinase activity;0.0106454933228021!GO:0006469;negative regulation of protein kinase activity;0.0106454933228021!GO:0000786;nucleosome;0.0106819632758674!GO:0003684;damaged DNA binding;0.0107245097566022!GO:0007021;tubulin folding;0.0108511920896039!GO:0051539;4 iron, 4 sulfur cluster binding;0.0109456206964591!GO:0051101;regulation of DNA binding;0.0110311652785279!GO:0006739;NADP metabolic process;0.0111978104591221!GO:0000339;RNA cap binding;0.0111978104591221!GO:0031902;late endosome membrane;0.0113890803498682!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0113890803498682!GO:0030119;AP-type membrane coat adaptor complex;0.0114741926878355!GO:0009308;amine metabolic process;0.0114841528641465!GO:0031418;L-ascorbic acid binding;0.012033903060869!GO:0009116;nucleoside metabolic process;0.0122342220504028!GO:0006401;RNA catabolic process;0.0125152059454735!GO:0000096;sulfur amino acid metabolic process;0.0125958194044897!GO:0051098;regulation of binding;0.0127615604986521!GO:0040008;regulation of growth;0.0130453256640258!GO:0031543;peptidyl-proline dioxygenase activity;0.0131029795763169!GO:0016860;intramolecular oxidoreductase activity;0.0131057047516348!GO:0050662;coenzyme binding;0.0131615356786319!GO:0043492;ATPase activity, coupled to movement of substances;0.0133224301129841!GO:0006778;porphyrin metabolic process;0.01340810976666!GO:0033013;tetrapyrrole metabolic process;0.01340810976666!GO:0006007;glucose catabolic process;0.0139551989573828!GO:0051348;negative regulation of transferase activity;0.0139858518569312!GO:0005832;chaperonin-containing T-complex;0.0140222026759092!GO:0006506;GPI anchor biosynthetic process;0.0141272103580515!GO:0019798;procollagen-proline dioxygenase activity;0.0144633183305851!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0144633183305851!GO:0016125;sterol metabolic process;0.0146433934068089!GO:0016251;general RNA polymerase II transcription factor activity;0.0149336873750307!GO:0006643;membrane lipid metabolic process;0.0150140446713682!GO:0033559;unsaturated fatty acid metabolic process;0.0152664418743964!GO:0006636;unsaturated fatty acid biosynthetic process;0.0152664418743964!GO:0042158;lipoprotein biosynthetic process;0.01537006396021!GO:0048468;cell development;0.01537006396021!GO:0007040;lysosome organization and biogenesis;0.015456823215397!GO:0006354;RNA elongation;0.0157374757051051!GO:0005637;nuclear inner membrane;0.0158850688579866!GO:0030041;actin filament polymerization;0.0161386593660128!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0161993580016907!GO:0035258;steroid hormone receptor binding;0.0164501034259849!GO:0006144;purine base metabolic process;0.0164501034259849!GO:0000209;protein polyubiquitination;0.016530086967299!GO:0005586;collagen type III;0.0167444604631467!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0169370338753468!GO:0045892;negative regulation of transcription, DNA-dependent;0.0173468590114441!GO:0006417;regulation of translation;0.0173629374654761!GO:0031625;ubiquitin protein ligase binding;0.0174418634971146!GO:0005819;spindle;0.0182350590805206!GO:0007034;vacuolar transport;0.0184695629172163!GO:0030125;clathrin vesicle coat;0.0186187575314437!GO:0030665;clathrin coated vesicle membrane;0.0186187575314437!GO:0005096;GTPase activator activity;0.0186187575314437!GO:0016407;acetyltransferase activity;0.0187172864633657!GO:0031529;ruffle organization and biogenesis;0.0189929447245316!GO:0008637;apoptotic mitochondrial changes;0.0190733864670551!GO:0045936;negative regulation of phosphate metabolic process;0.0190733864670551!GO:0006289;nucleotide-excision repair;0.0191836944701922!GO:0006505;GPI anchor metabolic process;0.020122273306585!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202749575999798!GO:0030131;clathrin adaptor complex;0.0203257998367875!GO:0030833;regulation of actin filament polymerization;0.0204922468695451!GO:0009967;positive regulation of signal transduction;0.0212123591041528!GO:0032984;macromolecular complex disassembly;0.0212710094393262!GO:0006892;post-Golgi vesicle-mediated transport;0.0214490632130261!GO:0005801;cis-Golgi network;0.0219917122849529!GO:0005975;carbohydrate metabolic process;0.0222296722288423!GO:0008168;methyltransferase activity;0.0227965290511004!GO:0006611;protein export from nucleus;0.0227965290511004!GO:0015036;disulfide oxidoreductase activity;0.022827421691009!GO:0022884;macromolecule transmembrane transporter activity;0.0231153275749493!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0231153275749493!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0243654771209833!GO:0033043;regulation of organelle organization and biogenesis;0.0243654771209833!GO:0006302;double-strand break repair;0.0243654771209833!GO:0006779;porphyrin biosynthetic process;0.0243773353821502!GO:0033014;tetrapyrrole biosynthetic process;0.0243773353821502!GO:0031124;mRNA 3'-end processing;0.0244889183379876!GO:0030032;lamellipodium biogenesis;0.0248867753643104!GO:0065007;biological regulation;0.0252142095333476!GO:0031970;organelle envelope lumen;0.0252231533324097!GO:0006066;alcohol metabolic process;0.0254158239486705!GO:0008320;protein transmembrane transporter activity;0.0257395249717908!GO:0051540;metal cluster binding;0.0258281018731197!GO:0051536;iron-sulfur cluster binding;0.0258281018731197!GO:0008097;5S rRNA binding;0.0260621635031956!GO:0045792;negative regulation of cell size;0.0262191069412065!GO:0022408;negative regulation of cell-cell adhesion;0.0262822391560883!GO:0006979;response to oxidative stress;0.0268844612096612!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0268844612096612!GO:0008154;actin polymerization and/or depolymerization;0.0268844612096612!GO:0016741;transferase activity, transferring one-carbon groups;0.0272518855566141!GO:0008286;insulin receptor signaling pathway;0.0273208018465651!GO:0006644;phospholipid metabolic process;0.0274434616658691!GO:0001872;zymosan binding;0.0279449813988637!GO:0001878;response to yeast;0.0279449813988637!GO:0032940;secretion by cell;0.0281861246759814!GO:0005774;vacuolar membrane;0.0282576629283634!GO:0008538;proteasome activator activity;0.0283403731863433!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0284701326817889!GO:0048037;cofactor binding;0.029147347115661!GO:0031371;ubiquitin conjugating enzyme complex;0.0291898340901!GO:0042168;heme metabolic process;0.0299443803566633!GO:0003923;GPI-anchor transamidase activity;0.0300453039858233!GO:0016255;attachment of GPI anchor to protein;0.0300453039858233!GO:0042765;GPI-anchor transamidase complex;0.0300453039858233!GO:0001952;regulation of cell-matrix adhesion;0.0303966948551849!GO:0030308;negative regulation of cell growth;0.0310081604791844!GO:0043624;cellular protein complex disassembly;0.0311879527593326!GO:0032906;transforming growth factor-beta2 production;0.0312861159551425!GO:0032909;regulation of transforming growth factor-beta2 production;0.0312861159551425!GO:0035035;histone acetyltransferase binding;0.0314723163383121!GO:0007033;vacuole organization and biogenesis;0.0316190418631828!GO:0009303;rRNA transcription;0.0322274903933911!GO:0005938;cell cortex;0.0324075948599464!GO:0006518;peptide metabolic process;0.0341187673805986!GO:0003678;DNA helicase activity;0.0343096850723216!GO:0050681;androgen receptor binding;0.0343434890583809!GO:0006897;endocytosis;0.0345899309909931!GO:0010324;membrane invagination;0.0345899309909931!GO:0008022;protein C-terminus binding;0.0346685748250911!GO:0007030;Golgi organization and biogenesis;0.0347060835282422!GO:0019318;hexose metabolic process;0.0351086002292601!GO:0005099;Ras GTPase activator activity;0.0351436916773753!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0354762872746608!GO:0030508;thiol-disulfide exchange intermediate activity;0.035971463639174!GO:0000075;cell cycle checkpoint;0.0364130380165583!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0364130380165583!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0364130380165583!GO:0050811;GABA receptor binding;0.0366007328600432!GO:0032507;maintenance of cellular protein localization;0.0367682302305516!GO:0005669;transcription factor TFIID complex;0.0369668413099761!GO:0006984;ER-nuclear signaling pathway;0.0371733124273502!GO:0043241;protein complex disassembly;0.0375506561152959!GO:0030433;ER-associated protein catabolic process;0.0379373372350032!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0379373372350032!GO:0006790;sulfur metabolic process;0.0379673676091731!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0380404889080245!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0381526194976968!GO:0004674;protein serine/threonine kinase activity;0.0382462220624543!GO:0006261;DNA-dependent DNA replication;0.0386001383228048!GO:0042326;negative regulation of phosphorylation;0.0391734170446048!GO:0003682;chromatin binding;0.0392776513982518!GO:0006378;mRNA polyadenylation;0.0396976336793738!GO:0006458;'de novo' protein folding;0.0398157350872958!GO:0051084;'de novo' posttranslational protein folding;0.0398157350872958!GO:0016584;nucleosome positioning;0.0401462224474812!GO:0005758;mitochondrial intermembrane space;0.0402167258966575!GO:0006220;pyrimidine nucleotide metabolic process;0.0402746281093096!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0410473952616754!GO:0009119;ribonucleoside metabolic process;0.041339752588176!GO:0009225;nucleotide-sugar metabolic process;0.0417179630459566!GO:0051235;maintenance of localization;0.0421409972335035!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0423719899891397!GO:0005996;monosaccharide metabolic process;0.0426587941078663!GO:0009451;RNA modification;0.0429604877034951!GO:0030911;TPR domain binding;0.0433862970920676!GO:0004448;isocitrate dehydrogenase activity;0.0442066427994343!GO:0046426;negative regulation of JAK-STAT cascade;0.0442852668295113!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0447029287059784!GO:0006405;RNA export from nucleus;0.0447495197742918!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0456527710231223!GO:0016453;C-acetyltransferase activity;0.0458409144672369!GO:0008234;cysteine-type peptidase activity;0.0458761901358414!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0461433133863286!GO:0010257;NADH dehydrogenase complex assembly;0.0461433133863286!GO:0033108;mitochondrial respiratory chain complex assembly;0.0461433133863286!GO:0031272;regulation of pseudopodium formation;0.0465041793565706!GO:0031269;pseudopodium formation;0.0465041793565706!GO:0031344;regulation of cell projection organization and biogenesis;0.0465041793565706!GO:0031268;pseudopodium organization and biogenesis;0.0465041793565706!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0465041793565706!GO:0031274;positive regulation of pseudopodium formation;0.0465041793565706!GO:0005784;translocon complex;0.0465951196667637!GO:0051059;NF-kappaB binding;0.0469766196588541!GO:0006541;glutamine metabolic process;0.0471119923726674!GO:0001953;negative regulation of cell-matrix adhesion;0.0475466807630931!GO:0022406;membrane docking;0.0475466807630931!GO:0048278;vesicle docking;0.0475466807630931!GO:0008299;isoprenoid biosynthetic process;0.0478645745421899!GO:0043433;negative regulation of transcription factor activity;0.0496460717162165
 |sample_id=11621
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=umbilical vein
 |top_motifs=TAL1_TCF{3,4,12}:1.67960899586;HOX{A5,B5}:1.60620695494;EN1,2:1.4178825783;GLI1..3:1.38047365048;HMGA1,2:1.31847257906;NKX3-1:1.20183592819;NR3C1:1.18262791888;HSF1,2:1.16924136282;MAFB:1.08006856362;NR6A1:1.05316249264;TFAP4:0.914880954835;SRF:0.887994962427;ZNF148:0.86711862175;RXR{A,B,G}:0.865156925604;TEAD1:0.848152025458;ATF6:0.844072667303;ADNP_IRX_SIX_ZHX:0.818670090105;GTF2A1,2:0.776980371728;PAX4:0.755063803413;ZNF238:0.750703394696;LHX3,4:0.746559073201;GZF1:0.683910621529;TP53:0.663967270483;TBX4,5:0.659845437659;SOX17:0.62712257607;NKX2-2,8:0.610869338295;HOX{A6,A7,B6,B7}:0.596332225672;PAX8:0.574833738595;PPARG:0.487614862731;HAND1,2:0.472689193407;AIRE:0.455832347833;MAZ:0.417449766109;DBP:0.412645116307;GFI1B:0.41006493765;HLF:0.370017177153;TBP:0.369756954141;CEBPA,B_DDIT3:0.36681223902;FOXD3:0.362716679435;UFEwm:0.347323305472;EVI1:0.34404000059;ZNF384:0.338115936855;PAX5:0.317179344417;NFATC1..3:0.316041273337;ESR1:0.306032588683;SOX5:0.301276640569;SMAD1..7,9:0.3012107037;CDX1,2,4:0.277248325146;POU5F1:0.275599786841;TLX1..3_NFIC{dimer}:0.273782185458;MYBL2:0.271194211714;NR5A1,2:0.260135625188;NFIX:0.251602319193;GTF2I:0.251168326322;EBF1:0.249843043736;XBP1:0.22881515558;IKZF1:0.227933086045;HIF1A:0.224887332438;RXRA_VDR{dimer}:0.207488465415;NKX2-1,4:0.192842046027;KLF4:0.17038265905;NFE2L2:0.168641550491;PDX1:0.168524619506;CDC5L:0.165862631648;NFE2L1:0.157826812128;ONECUT1,2:0.157177814641;ZBTB6:0.156322679939;PRRX1,2:0.153601904444;TEF:0.148347193065;HNF1A:0.147903596249;FOXA2:0.127795049545;ZNF423:0.127094422082;HES1:0.120125327923;TFDP1:0.119549758965;SP1:0.117916434101;NANOG{mouse}:0.116513328137;CRX:0.112882601366;ESRRA:0.111790781929;FOX{I1,J2}:0.109831302382;LEF1_TCF7_TCF7L1,2:0.0984186322058;FOXL1:0.094950155122;MTE{core}:0.0894176303764;T:0.0890428897196;PATZ1:0.0517009196583;PRDM1:0.0453269899529;TFCP2:0.0406884583648;ARID5B:0.0404250451508;ALX4:0.0134071939329;HNF4A_NR2F1,2:0.00321620358431;FOSL2:-0.00177497004559;TOPORS:-0.00538527165544;FOXP3:-0.00706440236448;ZIC1..3:-0.0146702082223;XCPE1{core}:-0.0310773145851;ZNF143:-0.034666858602;MZF1:-0.0376452554114;ALX1:-0.0406063412121;NANOG:-0.0427562901574;bHLH_family:-0.0452525852028;ELK1,4_GABP{A,B1}:-0.0482765121768;TFAP2{A,C}:-0.0554308703063;REST:-0.0577120560968;YY1:-0.060611857195;NFY{A,B,C}:-0.0634520689887;FOS_FOS{B,L1}_JUN{B,D}:-0.0674665921944;BACH2:-0.072011288692;MEF2{A,B,C,D}:-0.0751144381982;AHR_ARNT_ARNT2:-0.0797539472629;NFE2:-0.0885667324377;FOX{F1,F2,J1}:-0.0995021464292;PAX6:-0.106588589011;SPZ1:-0.109640663769;TLX2:-0.110394099921;RUNX1..3:-0.113070774334;NKX3-2:-0.12311488955;HIC1:-0.133184858752;GATA6:-0.137610468288;TFAP2B:-0.141548000977;HOX{A4,D4}:-0.14526810903;POU1F1:-0.145428730682;HOXA9_MEIS1:-0.153995627799;NKX2-3_NKX2-5:-0.160505883669;RFX1:-0.161851458306;ATF2:-0.169295539252;AR:-0.179064729101;PBX1:-0.17967234864;STAT1,3:-0.193680635067;JUN:-0.195547497715;SOX2:-0.196184132104;NFKB1_REL_RELA:-0.199549593064;OCT4_SOX2{dimer}:-0.202049333153;GCM1,2:-0.202624042476;CUX2:-0.203163350398;DMAP1_NCOR{1,2}_SMARC:-0.218906970422;MYB:-0.22222628813;NR1H4:-0.231243661157;GATA4:-0.269922471953;ELF1,2,4:-0.272107175591;NRF1:-0.272477498236;STAT2,4,6:-0.290991919603;GFI1:-0.318338619273;NFIL3:-0.330637638896;RREB1:-0.334115981215;NHLH1,2:-0.337000598237;PITX1..3:-0.359080198759;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36790783012;EGR1..3:-0.36790836637;MYFfamily:-0.374543030699;POU2F1..3:-0.386171282852;POU6F1:-0.393844967795;SNAI1..3:-0.396755159616;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403854941477;STAT5{A,B}:-0.413650567437;FOXM1:-0.422780507858;ZFP161:-0.440659737321;RORA:-0.448683873597;ZBTB16:-0.449887418338;IRF7:-0.469209257718;FOXN1:-0.478373327747;IRF1,2:-0.483698785254;ETS1,2:-0.493944206315;HMX1:-0.500828675555;PAX2:-0.504166370627;SPI1:-0.516810151822;SOX{8,9,10}:-0.518075941434;VSX1,2:-0.52462234895;MED-1{core}:-0.528549537896;ATF4:-0.533845259182;POU3F1..4:-0.546104949863;LMO2:-0.575976051494;TGIF1:-0.580523356255;SPIB:-0.580796997574;PAX1,9:-0.596015431261;SREBF1,2:-0.596600532219;ATF5_CREB3:-0.61919650071;E2F1..5:-0.622227764405;MTF1:-0.627405026352;FOXQ1:-0.673451551115;BPTF:-0.678550969467;FOX{D1,D2}:-0.69158809377;ZEB1:-0.709489882317;BREu{core}:-0.734165203574;NKX6-1,2:-0.745619115063;HBP1_HMGB_SSRP1_UBTF:-0.806150873798;RFX2..5_RFXANK_RFXAP:-0.815552288916;PAX3,7:-0.816169106734;FOXP1:-0.831847477302;FOXO1,3,4:-0.853728788576;EP300:-0.86087931339;CREB1:-0.897856776713;MYOD1:-0.964282494609;IKZF2:-0.996121360951;RBPJ:-1.07251496507
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11621-122B1;search_select_hide=table117:FF:11621-122B1
 }}

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FF:11621-122B1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:12, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0