FF:11697-123A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005083 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005083 | ||
|accession_numbers=CAGE;DRX008353;DRR009225;DRZ000650;DRZ002035;DRZ012000;DRZ013385 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037160;DRR041526;DRZ007168 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000097 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.82!173.17!TWIST1;;chr6:34204921..34204939,+!p3@HMGA1!1.72!1456.00!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.64!110.83!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.59!138.54!SIX1;;chr7:27205136..27205164,-!p1@HOXA9!1.50!30.37!HOXA9;;chr16:86600426..86600441,+!p1@FOXC2!1.44!63.94!FOXC2;;chr5:134369905..134369972,-!p1@PITX1!1.42!38.36!PITX1;;chr11:65686802..65686818,+!p6@DRAP1!1.38!39.16!DRAP1;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.38!HOXA11;;chr12:66218598..66218645,+!p2@HMGA2!1.36!97.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.37!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.32!179.30!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.91!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.91!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.92!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.17!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.28!55.68!TBX2;;chr12:54379029..54379057,+!p2@HOXC10!1.28!17.85!HOXC10;;chr1:170632285..170632309,+!p1@PRRX1!1.25!18.92!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.23!15.99!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!1.22!15.45!HOXA9;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.18!14.12!HOXA11;;chr11:65686732..65686756,+!p2@DRAP1!1.13!53.02!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1323.59!HMGA1;;chr7:96654133..96654150,-!p1@DLX5!1.11!11.99!DLX5;;chr11:65687362..65687436,+!p3@DRAP1!1.10!53.28!DRAP1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.38!HMGA2;;chr12:54380036..54380091,+!p4@HOXC10!1.10!11.72!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.08!10.92!HAND2;;chr20:30193083..30193098,+!p1@ID1!1.04!808.32!ID1;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.65!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.02!12.52!PRRX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.02!10.12!GLIS1;;chr11:65687222..65687240,+!p7@DRAP1!1.01!11.99!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.00!35.70!FOSL1;;chr7:27213893..27213954,-!p1@HOXA10!1.00!9.06!HOXA10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.12!RUNX2;;chr2:85981107..85981120,+!p3@ATOH8!0.99!8.79!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.98!12.26!IRX3;;chr6:134210243..134210257,+!p1@TCF21!0.98!8.53!TCF21;;chr19:47523058..47523114,+!p1@NPAS1!0.98!8.53!NPAS1;;chr11:65686952..65686975,+!p5@DRAP1!0.96!46.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.25!TWIST1;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.46!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.79!SIX1;;chr7:96654026..96654061,-!p2@DLX5!0.94!7.73!DLX5;;chr14:75988771..75988826,+!p1@BATF!0.93!10.12!BATF;;chr12:54393880..54393962,+!p1@HOXC9!0.93!7.46!HOXC9;;chr8:49833948..49833973,-!p2@SNAI2!0.92!49.02!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.91!12.52!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.91!9.32!IRX3;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.19!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.19!SIX2;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.19!HAND2;;chr12:53614115..53614154,-!p1@RARG!0.90!38.63!RARG;;chr16:54320158..54320200,-!p5@IRX3!0.90!10.12!IRX3;;chr12:54380404..54380433,+!p3@HOXC10!0.90!6.93!HOXC10;;chr2:172967242..172967265,-!p2@DLX2!0.90!6.93!DLX2;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.93!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.36!FOSL1;;chr8:49833978..49833996,-!p1@SNAI2!0.89!144.67!SNAI2;;chr1:170633262..170633285,+!p3@PRRX1!0.89!7.73!PRRX1;;chr6:31126291..31126399,+!p1@TCF19!0.88!66.07!TCF19;;chr7:27196217..27196246,-!p2@HOXA7!0.88!6.66!HOXA7;;chr2:176994408..176994492,+!p1@HOXD8!0.88!6.66!HOXD8;;chr5:321810..321877,+!p1@AHRR!0.87!21.31!AHRR;;chr17:59477275..59477286,+!p3@TBX2!0.87!8.79!TBX2;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.39!PRRX2;;chr2:172949484..172949522,+!p1@DLX1!0.87!6.39!DLX1;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.39!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.73!TBX18;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.93!PRRX1;;chr2:85980919..85980942,+!p4@ATOH8!0.86!6.66!ATOH8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.13!HOXC5;;chr11:65687158..65687216,+!p4@DRAP1!0.84!35.97!DRAP1;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218469..66218477,+!p16@HMGA2!0.84!5.86!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.86!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.84!5.86!HMGA2;;chr4:57522598..57522664,-!p3@HOPX!0.84!5.86!HOPX;;chr11:65687243..65687276,+!p8@DRAP1!0.83!7.99!DRAP1;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.46!HMGA2;;chr2:172967276..172967296,-!p3@DLX2!0.82!5.59!DLX2;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.99!OSR1;;chr16:54320646..54320672,-!p2@IRX3!0.81!8.53!IRX3;;chr19:38720294..38720348,-!p1@DPF1!0.81!6.93!DPF1;;chr19:46801639..46801699,+!p1@HIF3A!0.80!5.33!HIF3A;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.33!KDM5D;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.84!FOXM1;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.85!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.32!TWIST2;;chr15:96873984..96873999,+!p3@NR2F2!0.78!40.23!NR2F2;;chr6:34204973..34204990,+!p4@HMGA1!0.77!70.87!HMGA1;;chr1:23885981..23886002,-!p1@ID3!0.76!926.62!ID3;;chr5:176738887..176738934,-!p1@MXD3!0.76!34.90!MXD3;;chr2:169312600..169312606,+!p2@CERS6!0.76!7.73!CERS6;;chr4:299227..299272,-!p1@ZNF732!0.76!4.80!ZNF732;;chr16:86600458..86600461,+!p3@FOXC2!0.76!4.80!FOXC2;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.80!FOXC2;;chr12:54394309..54394336,+!p2@HOXC9!0.76!4.80!HOXC9;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.18!FOXD1;;chr17:41622765..41622821,-!p2@ETV4!0.74!7.19!ETV4;;chr11:46299186..46299195,+!p3@CREB3L1!0.74!5.06!CREB3L1;;chr11:65688877..65688891,+!p13@DRAP1!0.74!4.53!DRAP1;;chr2:85981073..85981091,+!p5@ATOH8!0.74!4.53!ATOH8;;chr8:77593474..77593612,+!p1@ZFHX4!0.72!19.98!ZFHX4;;chr16:54964740..54964789,+!p1@IRX5!0.72!6.39!IRX5;;chr2:102091566..102091581,-!p1@RFX8!0.72!4.26!RFX8;;chr12:115122318..115122331,-!p2@TBX3!0.72!4.26!TBX3;;chr2:172967621..172967637,-!p1@DLX2!0.71!12.26!DLX2;;chr16:54320675..54320715,-!p1@IRX3!0.71!9.59!IRX3;;chr2:85981222..85981259,+!p2@ATOH8!0.71!7.19!ATOH8;;chr12:66218152..66218174,+!p10@HMGA2!0.71!4.53!HMGA2;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.29!FOXM1;;chr5:92918919..92918942,+!p1@NR2F1!0.70!20.25!NR2F1;;chr7:27212501..27212513,-!p5@HOXA10!0.70!4.00!HOXA10;;chr12:54402745..54402788,+!p1@HOXC8!0.70!4.00!HOXC8;;chr15:96873921..96873946,+!p1@NR2F2!0.69!126.28!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.69!39.70!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.69!4.80!DRAP1;;chr19:13134457..13134462,+!p5@NFIX!0.68!7.19!NFIX;;chr11:65686855..65686946,+!p1@DRAP1!0.67!321.84!DRAP1;;chr17:41623692..41623715,-!p1@ETV4!0.67!17.85!ETV4;;chr17:41623009..41623053,-!p4@ETV4!0.67!6.39!ETV4;;chr2:85980951..85981004,+!p1@ATOH8!0.67!6.39!ATOH8;;chr9:77112244..77112262,+!p1@RORB!0.67!4.26!RORB;;chr2:85981008..85981025,+!p7@ATOH8!0.67!3.73!ATOH8;;chr4:109089095..109089144,-!p6@LEF1!0.67!3.73!LEF1;;chr17:59477403..59477414,+!p4@TBX2!0.67!3.73!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.73!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.65!3.46!HMGA2;;chr7:27183263..27183284,-!p2@HOXA5!0.65!3.46!HOXA5;;chr5:72744445..72744466,-!p2@FOXD1!0.64!6.13!FOXD1;;chr19:49865646..49865718,-!p1@TEAD2!0.63!33.04!TEAD2;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.26!PPARG;;chr20:32274179..32274213,-!p1@E2F1!0.62!25.04!E2F1;;chr5:158527104..158527135,-!p4@EBF1!0.62!3.20!EBF1;;chr20:42295713..42295738,+!p2@MYBL2!0.61!21.58!MYBL2;;chr12:7079780..7079791,-!p2@PHB2!0.61!18.92!PHB2;;chr2:113993052..113993097,-!p2@PAX8!0.61!7.73!PAX8;;chr15:96869255..96869291,+!p6@NR2F2!0.61!6.13!NR2F2;;chr7:137686763..137686784,-!p5@CREB3L2!0.61!5.86!CREB3L2;;chr2:71127699..71127744,+!p1@VAX2!0.60!6.93!VAX2;;chr20:50721803..50721857,-!p2@ZFP64!0.60!5.06!ZFP64;;chr11:63684602..63684664,-!p1@RCOR2!0.59!6.39!RCOR2;;chr15:96869114..96869160,+!p11@NR2F2!0.59!4.26!NR2F2;;chr4:57522166..57522260,-!p2@HOPX!0.59!3.46!HOPX;;chr2:172950227..172950249,+!p2@DLX1!0.59!2.93!DLX1;;chr2:214014959..214015006,-!p4@IKZF2!0.59!2.93!IKZF2;;chr4:57522674..57522699,-!p5@HOPX!0.59!2.93!HOPX;;chr11:65668011..65668020,-!p3@FOSL1!0.59!2.93!FOSL1;;chr12:54378984..54378996,+!p7@HOXC10!0.59!2.93!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.93!HOXC10;;chr1:170633058..170633084,+!p5@PRRX1!0.59!2.93!PRRX1;;chr20:42295745..42295765,+!p1@MYBL2!0.58!56.22!MYBL2;;chr15:96873861..96873872,+!p9@NR2F2!0.58!6.66!NR2F2;;chr7:27135591..27135658,-!p1@HOXA1!0.58!6.13!HOXA1;;chr5:72743793..72743855,-!p4@FOXD1!0.58!3.46!FOXD1;;chr3:52001448..52001478,-!p2@PCBP4!0.57!46.62!PCBP4;;chr19:1592714..1592762,-!p1@MBD3!0.57!25.04!MBD3;;chr20:39946361..39946379,-!p2@ZHX3!0.57!9.59!ZHX3;;chr19:45260775..45260838,+!p5@BCL3!0.57!3.73!BCL3;;chr19:23299814..23299844,+!p1@ZNF730!0.57!3.46!ZNF730;;chr15:67357924..67357952,+!p2@SMAD3!0.56!21.31!SMAD3;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.26!ETV4;;chr16:54319010..54319041,-!p8@IRX3!0.56!2.66!IRX3;;chr16:86601052..86601066,+!p4@FOXC2!0.56!2.66!FOXC2;;chrY:2803415..2803468,+!p1@ZFY!0.56!2.66!ZFY;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.66!CREB3L1;;chr1:25291475..25291511,-!p2@RUNX3!0.56!2.66!RUNX3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.55!35.43!TAX1BP3;;chr11:47279504..47279563,+!p1@NR1H3!0.55!6.66!NR1H3;;chr1:247171347..247171366,-!p2@ZNF695!0.55!5.33!ZNF695;;chr2:214015111..214015179,-!p1@IKZF2!0.54!5.06!IKZF2;;chr15:83953397..83953425,-!p1@BNC1!0.54!2.93!BNC1;;chr1:8938709..8938720,-!p3@ENO1!0.53!148.40!ENO1;;chr7:44143925..44143970,+!p1@AEBP1!0.53!69.00!AEBP1;;chr1:8934931..8934947,-!p4@ENO1!0.53!9.59!ENO1;;chr8:145669791..145669834,-!p1@TONSL!0.53!8.26!TONSL;;chr15:57511609..57511651,+!p2@TCF12!0.53!4.53!TCF12;;chr17:41623075..41623101,-!p9@ETV4!0.53!2.93!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.53!2.40!ETV4;;chr11:46299443..46299459,+!p4@CREB3L1!0.53!2.40!CREB3L1;;chr7:27196196..27196210,-!p5@HOXA7!0.53!2.40!HOXA7;;chr2:172967323..172967336,-!p4@DLX2!0.53!2.40!DLX2;;chr2:85981271..85981289,+!p9@ATOH8!0.53!2.40!ATOH8;;chr4: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| |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.82!173.17!TWIST1;;chr6:34204921..34204939,+!p3@HMGA1!1.72!1456.00!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.64!110.83!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.59!138.54!SIX1;;chr7:27205136..27205164,-!p1@HOXA9!1.50!30.37!HOXA9;;chr16:86600426..86600441,+!p1@FOXC2!1.44!63.94!FOXC2;;chr5:134369905..134369972,-!p1@PITX1!1.42!38.36!PITX1;;chr11:65686802..65686818,+!p6@DRAP1!1.38!39.16!DRAP1;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.38!HOXA11;;chr12:66218598..66218645,+!p2@HMGA2!1.36!97.51!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!30.37!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.32!179.30!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.91!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.91!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.92!HOXC5;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.17!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.28!55.68!TBX2;;chr12:54379029..54379057,+!p2@HOXC10!1.28!17.85!HOXC10;;chr1:170632285..170632309,+!p1@PRRX1!1.25!18.92!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.23!15.99!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!1.22!15.45!HOXA9;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!1.18!14.12!HOXA11;;chr11:65686732..65686756,+!p2@DRAP1!1.13!53.02!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1323.59!HMGA1;;chr7:96654133..96654150,-!p1@DLX5!1.11!11.99!DLX5;;chr11:65687362..65687436,+!p3@DRAP1!1.10!53.28!DRAP1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.38!HMGA2;;chr12:54380036..54380091,+!p4@HOXC10!1.10!11.72!HOXC10;;chr4:174451370..174451387,-!p1@HAND2!1.08!10.92!HAND2;;chr20:30193083..30193098,+!p1@ID1!1.04!808.32!ID1;;chr12:66218378..66218401,+!p6@HMGA2!1.02!14.65!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.02!12.52!PRRX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.02!10.12!GLIS1;;chr11:65687222..65687240,+!p7@DRAP1!1.01!11.99!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!1.00!35.70!FOSL1;;chr7:27213893..27213954,-!p1@HOXA10!1.00!9.06!HOXA10;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.12!RUNX2;;chr2:85981107..85981120,+!p3@ATOH8!0.99!8.79!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.98!12.26!IRX3;;chr6:134210243..134210257,+!p1@TCF21!0.98!8.53!TCF21;;chr19:47523058..47523114,+!p1@NPAS1!0.98!8.53!NPAS1;;chr11:65686952..65686975,+!p5@DRAP1!0.96!46.36!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.95!20.25!TWIST1;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.46!SATB2;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.79!SIX1;;chr7:96654026..96654061,-!p2@DLX5!0.94!7.73!DLX5;;chr14:75988771..75988826,+!p1@BATF!0.93!10.12!BATF;;chr12:54393880..54393962,+!p1@HOXC9!0.93!7.46!HOXC9;;chr8:49833948..49833973,-!p2@SNAI2!0.92!49.02!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.91!12.52!TBX2;;chr16:54320617..54320643,-!p3@IRX3!0.91!9.32!IRX3;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.19!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.19!SIX2;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.19!HAND2;;chr12:53614115..53614154,-!p1@RARG!0.90!38.63!RARG;;chr16:54320158..54320200,-!p5@IRX3!0.90!10.12!IRX3;;chr12:54380404..54380433,+!p3@HOXC10!0.90!6.93!HOXC10;;chr2:172967242..172967265,-!p2@DLX2!0.90!6.93!DLX2;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.93!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.36!FOSL1;;chr8:49833978..49833996,-!p1@SNAI2!0.89!144.67!SNAI2;;chr1:170633262..170633285,+!p3@PRRX1!0.89!7.73!PRRX1;;chr6:31126291..31126399,+!p1@TCF19!0.88!66.07!TCF19;;chr7:27196217..27196246,-!p2@HOXA7!0.88!6.66!HOXA7;;chr2:176994408..176994492,+!p1@HOXD8!0.88!6.66!HOXD8;;chr5:321810..321877,+!p1@AHRR!0.87!21.31!AHRR;;chr17:59477275..59477286,+!p3@TBX2!0.87!8.79!TBX2;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.39!PRRX2;;chr2:172949484..172949522,+!p1@DLX1!0.87!6.39!DLX1;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.39!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.73!TBX18;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.93!PRRX1;;chr2:85980919..85980942,+!p4@ATOH8!0.86!6.66!ATOH8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.13!HOXC5;;chr11:65687158..65687216,+!p4@DRAP1!0.84!35.97!DRAP1;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218469..66218477,+!p16@HMGA2!0.84!5.86!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.86!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.84!5.86!HMGA2;;chr4:57522598..57522664,-!p3@HOPX!0.84!5.86!HOPX;;chr11:65687243..65687276,+!p8@DRAP1!0.83!7.99!DRAP1;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.46!HMGA2;;chr2:172967276..172967296,-!p3@DLX2!0.82!5.59!DLX2;;chr2:19558373..19558392,-!p1@OSR1!0.81!15.99!OSR1;;chr16:54320646..54320672,-!p2@IRX3!0.81!8.53!IRX3;;chr19:38720294..38720348,-!p1@DPF1!0.81!6.93!DPF1;;chr19:46801639..46801699,+!p1@HIF3A!0.80!5.33!HIF3A;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.33!KDM5D;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.84!FOXM1;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.85!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.32!TWIST2;;chr1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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor3.CNhs12126.11697-123A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11697-123A5 | |id=FF:11697-123A5 | ||
|is_a=EFO:0002091;;FF:0000097 | |is_a=EFO:0002091;;FF:0000097 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12126 | |||
|library_id_phase_based=2:CNhs12126 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11697 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTTTCG.11697 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11697 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTTTCG.11697 | |||
|name=Mesenchymal Stem Cells - bone marrow, donor3 | |name=Mesenchymal Stem Cells - bone marrow, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED | |profile_hcage=CNhs12126,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number=SC7505 | |rna_catalog_number=SC7505 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=123A5 | |rna_tube_id=123A5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.GTTTCG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:3654 | |sample_cell_catalog=lot:3654 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449 | |top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11697-123A5;search_select_hide=table117:FF:11697-123A5 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Mesenchymal Stem Cells - bone marrow, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12126 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12126
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12126
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.76 |
| 10 | 10 | 0.883 |
| 100 | 100 | 0.558 |
| 101 | 101 | 0.0588 |
| 102 | 102 | 0.608 |
| 103 | 103 | 0.65 |
| 104 | 104 | 0.228 |
| 105 | 105 | 0.539 |
| 106 | 106 | 0.628 |
| 107 | 107 | 0.202 |
| 108 | 108 | 0.877 |
| 109 | 109 | 0.00678 |
| 11 | 11 | 0.0594 |
| 110 | 110 | 0.0421 |
| 111 | 111 | 0.761 |
| 112 | 112 | 0.782 |
| 113 | 113 | 0.448 |
| 114 | 114 | 0.964 |
| 115 | 115 | 0.298 |
| 116 | 116 | 0.0342 |
| 117 | 117 | 0.211 |
| 118 | 118 | 0.727 |
| 119 | 119 | 0.66 |
| 12 | 12 | 0.6 |
| 120 | 120 | 0.167 |
| 121 | 121 | 0.541 |
| 122 | 122 | 0.767 |
| 123 | 123 | 0.00202 |
| 124 | 124 | 0.251 |
| 125 | 125 | 0.586 |
| 126 | 126 | 0.649 |
| 127 | 127 | 0.453 |
| 128 | 128 | 0.929 |
| 129 | 129 | 0.535 |
| 13 | 13 | 0.587 |
| 130 | 130 | 0.0381 |
| 131 | 131 | 0.629 |
| 132 | 132 | 0.217 |
| 133 | 133 | 0.472 |
| 134 | 134 | 0.276 |
| 135 | 135 | 0.544 |
| 136 | 136 | 0.718 |
| 137 | 137 | 0.0126 |
| 138 | 138 | 0.0743 |
| 139 | 139 | 0.3 |
| 14 | 14 | 0.973 |
| 140 | 140 | 0.541 |
| 141 | 141 | 0.209 |
| 142 | 142 | 0.104 |
| 143 | 143 | 0.285 |
| 144 | 144 | 0.764 |
| 145 | 145 | 0.441 |
| 146 | 146 | 0.147 |
| 147 | 147 | 0.266 |
| 148 | 148 | 0.174 |
| 149 | 149 | 0.472 |
| 15 | 15 | 0.784 |
| 150 | 150 | 0.338 |
| 151 | 151 | 0.705 |
| 152 | 152 | 0.146 |
| 153 | 153 | 0.102 |
| 154 | 154 | 0.372 |
| 155 | 155 | 0.826 |
| 156 | 156 | 0.959 |
| 157 | 157 | 0.632 |
| 158 | 158 | 0.053 |
| 159 | 159 | 0.752 |
| 16 | 16 | 0.224 |
| 160 | 160 | 0.017 |
| 161 | 161 | 0.524 |
| 162 | 162 | 0.317 |
| 163 | 163 | 0.45 |
| 164 | 164 | 0.677 |
| 165 | 165 | 0.191 |
| 166 | 166 | 0.964 |
| 167 | 167 | 0.447 |
| 168 | 168 | 0.277 |
| 169 | 169 | 0.0773 |
| 17 | 17 | 0.336 |
| 18 | 18 | 0.551 |
| 19 | 19 | 0.0514 |
| 2 | 2 | 0.45 |
| 20 | 20 | 0.968 |
| 21 | 21 | 0.72 |
| 22 | 22 | 0.0797 |
| 23 | 23 | 0.876 |
| 24 | 24 | 0.451 |
| 25 | 25 | 0.846 |
| 26 | 26 | 0.0207 |
| 27 | 27 | 0.372 |
| 28 | 28 | 0.0445 |
| 29 | 29 | 0.353 |
| 3 | 3 | 0.48 |
| 30 | 30 | 0.349 |
| 31 | 31 | 0.564 |
| 32 | 32 | 3.92818e-6 |
| 33 | 33 | 0.42 |
| 34 | 34 | 0.303 |
| 35 | 35 | 0.524 |
| 36 | 36 | 0.777 |
| 37 | 37 | 0.158 |
| 38 | 38 | 0.457 |
| 39 | 39 | 0.624 |
| 4 | 4 | 0.581 |
| 40 | 40 | 0.0718 |
| 41 | 41 | 0.318 |
| 42 | 42 | 0.705 |
| 43 | 43 | 0.298 |
| 44 | 44 | 0.991 |
| 45 | 45 | 0.401 |
| 46 | 46 | 0.117 |
| 47 | 47 | 0.187 |
| 48 | 48 | 0.181 |
| 49 | 49 | 0.479 |
| 5 | 5 | 0.361 |
| 50 | 50 | 0.192 |
| 51 | 51 | 0.527 |
| 52 | 52 | 0.563 |
| 53 | 53 | 0.242 |
| 54 | 54 | 0.788 |
| 55 | 55 | 0.765 |
| 56 | 56 | 0.2 |
| 57 | 57 | 0.399 |
| 58 | 58 | 0.351 |
| 59 | 59 | 0.012 |
| 6 | 6 | 0.546 |
| 60 | 60 | 0.836 |
| 61 | 61 | 0.639 |
| 62 | 62 | 0.49 |
| 63 | 63 | 0.237 |
| 64 | 64 | 0.325 |
| 65 | 65 | 0.123 |
| 66 | 66 | 0.0515 |
| 67 | 67 | 0.757 |
| 68 | 68 | 0.0434 |
| 69 | 69 | 0.0475 |
| 7 | 7 | 0.922 |
| 70 | 70 | 0.766 |
| 71 | 71 | 0.165 |
| 72 | 72 | 0.491 |
| 73 | 73 | 0.0263 |
| 74 | 74 | 0.413 |
| 75 | 75 | 0.336 |
| 76 | 76 | 0.483 |
| 77 | 77 | 0.082 |
| 78 | 78 | 0.425 |
| 79 | 79 | 0.253 |
| 8 | 8 | 0.0292 |
| 80 | 80 | 0.461 |
| 81 | 81 | 0.918 |
| 82 | 82 | 0.774 |
| 83 | 83 | 0.394 |
| 84 | 84 | 0.499 |
| 85 | 85 | 0.473 |
| 86 | 86 | 0.909 |
| 87 | 87 | 0.0686 |
| 88 | 88 | 0.415 |
| 89 | 89 | 0.257 |
| 9 | 9 | 0.385 |
| 90 | 90 | 0.091 |
| 91 | 91 | 0.485 |
| 92 | 92 | 0.858 |
| 93 | 93 | 0.888 |
| 94 | 94 | 0.98 |
| 95 | 95 | 0.0457 |
| 96 | 96 | 0.979 |
| 97 | 97 | 0.691 |
| 98 | 98 | 0.391 |
| 99 | 99 | 3.35404e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12126
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000097 human mesenchymal stem cell of bone marrow sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
