FF:11724-123D5: Difference between revisions

Latest revision as of 18:16, 4 June 2020

Name:	Mouse Neurons - cortical, donor1
Species:	Mouse (Mus musculus)
Library ID:	CNhs12025
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cortex
dev stage	NA
sex	NA
age	NA
cell type	neuron
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	RNAMNC2
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005346

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12025		CAGE		DRX008831		DRR009703

Accession ID Mm9

Library id		BAM		CTSS
CNhs12025		DRZ001128		DRZ002513

Accession ID Mm10

Library id		BAM		CTSS
CNhs12025		DRZ012478		DRZ013863

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12025

0	0
1	0.189
10	0
100	0.767
1000	-0.0157
1001	-0.0631
1002	0.46
1003	0.537
1004	0.0428
1005	-0.282
1006	0.0527
1007	0.0592
1008	0
1009	-0.2
101	-0.0748
1010	0
1011	0.0739
1012	0.0428
1013	-0.184
1014	0.118
1015	0.426
1016	0.249
1017	0
1018	0
1019	0
102	0
1020	0.389
1021	0.118
1022	-0.124
1023	0
1024	-0.14
1025	0
1026	0
1027	0.568
1028	0
1029	-0.101
103	-0.0719
1030	0
1031	-0.477
1032	-0.177
1033	-0.0236
1034	0
1035	0
1036	-0.12
1037	0
1038	0.186
1039	-0.231
104	0
1040	-0.173
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12025

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00258
MA0003.1	MA0003.1	0.0931
MA0004.1	MA0004.1	0.835
MA0006.1	MA0006.1	0.132
MA0007.1	MA0007.1	0.348
MA0009.1	MA0009.1	0.683
MA0014.1	MA0014.1	0.402
MA0017.1	MA0017.1	1.17954e-5
MA0018.2	MA0018.2	0.053
MA0019.1	MA0019.1	0.347
MA0024.1	MA0024.1	0.0552
MA0025.1	MA0025.1	0.214
MA0027.1	MA0027.1	0.754
MA0028.1	MA0028.1	0.915
MA0029.1	MA0029.1	0.419
MA0030.1	MA0030.1	0.417
MA0031.1	MA0031.1	0.0713
MA0035.2	MA0035.2	0.0417
MA0038.1	MA0038.1	0.106
MA0039.2	MA0039.2	0.0152
MA0040.1	MA0040.1	0.581
MA0041.1	MA0041.1	0.314
MA0042.1	MA0042.1	0.996
MA0043.1	MA0043.1	0.0356
MA0046.1	MA0046.1	1.4892e-14
MA0047.2	MA0047.2	2.86339e-4
MA0048.1	MA0048.1	0.882
MA0050.1	MA0050.1	1.1127e-8
MA0051.1	MA0051.1	0.00103
MA0052.1	MA0052.1	5.49273e-5
MA0055.1	MA0055.1	0.664
MA0057.1	MA0057.1	0.0799
MA0058.1	MA0058.1	0.692
MA0059.1	MA0059.1	0.685
MA0060.1	MA0060.1	1.67427e-6
MA0061.1	MA0061.1	0.0734
MA0062.2	MA0062.2	0.639
MA0065.2	MA0065.2	1.54522e-5
MA0066.1	MA0066.1	0.2
MA0067.1	MA0067.1	0.782
MA0068.1	MA0068.1	0.212
MA0069.1	MA0069.1	0.0436
MA0070.1	MA0070.1	0.449
MA0071.1	MA0071.1	0.208
MA0072.1	MA0072.1	0.111
MA0073.1	MA0073.1	0.703
MA0074.1	MA0074.1	0.302
MA0076.1	MA0076.1	0.33
MA0077.1	MA0077.1	0.00362
MA0078.1	MA0078.1	0.00675
MA0079.2	MA0079.2	0.936
MA0080.2	MA0080.2	2.16772e-11
MA0081.1	MA0081.1	0.489
MA0083.1	MA0083.1	6.59244e-6
MA0084.1	MA0084.1	0.657
MA0087.1	MA0087.1	0.673
MA0088.1	MA0088.1	0.306
MA0090.1	MA0090.1	0.0195
MA0091.1	MA0091.1	0.404
MA0092.1	MA0092.1	0.318
MA0093.1	MA0093.1	0.829
MA0099.2	MA0099.2	1.11985e-5
MA0100.1	MA0100.1	0.641
MA0101.1	MA0101.1	0.247
MA0102.2	MA0102.2	0.963
MA0103.1	MA0103.1	0.0481
MA0104.2	MA0104.2	0.528
MA0105.1	MA0105.1	0.0431
MA0106.1	MA0106.1	0.22
MA0107.1	MA0107.1	0.133
MA0108.2	MA0108.2	8.82552e-5
MA0111.1	MA0111.1	0.742
MA0112.2	MA0112.2	1.40191e-4
MA0113.1	MA0113.1	0.483
MA0114.1	MA0114.1	9.61006e-5
MA0115.1	MA0115.1	0.0169
MA0116.1	MA0116.1	0.0675
MA0117.1	MA0117.1	0.871
MA0119.1	MA0119.1	0.175
MA0122.1	MA0122.1	0.814
MA0124.1	MA0124.1	0.995
MA0125.1	MA0125.1	0.404
MA0131.1	MA0131.1	0.554
MA0135.1	MA0135.1	0.717
MA0136.1	MA0136.1	2.35308e-8
MA0137.2	MA0137.2	0.0789
MA0138.2	MA0138.2	0.743
MA0139.1	MA0139.1	0.134
MA0140.1	MA0140.1	0.00444
MA0141.1	MA0141.1	0.00651
MA0142.1	MA0142.1	0.0079
MA0143.1	MA0143.1	0.00177
MA0144.1	MA0144.1	0.0577
MA0145.1	MA0145.1	0.0194
MA0146.1	MA0146.1	0.0867
MA0147.1	MA0147.1	0.584
MA0148.1	MA0148.1	1.37487e-6
MA0149.1	MA0149.1	0.0558
MA0150.1	MA0150.1	0.0388
MA0152.1	MA0152.1	0.42
MA0153.1	MA0153.1	2.73981e-12
MA0154.1	MA0154.1	0.0154
MA0155.1	MA0155.1	0.591
MA0156.1	MA0156.1	4.86293e-5
MA0157.1	MA0157.1	0.0136
MA0159.1	MA0159.1	0.00227
MA0160.1	MA0160.1	0.057
MA0162.1	MA0162.1	0.337
MA0163.1	MA0163.1	0.00336
MA0164.1	MA0164.1	0.92
MA0258.1	MA0258.1	0.00595
MA0259.1	MA0259.1	0.476

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12025

Novel motif	Logo	P-value
1	1	0.207
10	10	0.202
100	100	0.981
101	101	0.704
102	102	0.703
103	103	0.119
104	104	0.896
105	105	0.433
106	106	0.00943
107	107	0.0511
108	108	0.644
109	109	0.00341
11	11	0.134
110	110	0.176
111	111	0.0423
112	112	0.00557
113	113	0.907
114	114	0.236
115	115	0.11
116	116	0.463
117	117	0.164
118	118	0.647
119	119	0.104
12	12	0.535
120	120	0.8
121	121	0.135
122	122	0.402
123	123	0.685
124	124	0.923
125	125	0.325
126	126	0.235
127	127	0.133
128	128	0.0227
129	129	0.172
13	13	1.27472e-4
130	130	0.738
131	131	0.436
132	132	0.705
133	133	0.526
134	134	0.531
135	135	0.184
136	136	0.109
137	137	0.294
138	138	0.782
139	139	0.234
14	14	0.581
140	140	0.508
141	141	0.0418
142	142	0.157
143	143	0.579
144	144	0.765
145	145	0.0852
146	146	0.34
147	147	0.992
148	148	0.78
149	149	0.0486
15	15	0.236
150	150	0.309
151	151	0.331
152	152	0.0359
153	153	0.945
154	154	0.978
155	155	0.574
156	156	0.00127
157	157	0.16
158	158	0.254
159	159	0.0954
160	160	0.327
161	161	0.242
162	162	0.989
163	163	0.0834
164	164	0.0263
165	165	0.00464
166	166	0.588
167	167	0.605
168	168	0.461
169	169	0.00575
17	17	0.0285
18	18	0.929
19	19	0.0442
2	2	0.42
20	20	0.807
21	21	0.542
22	22	0.0893
23	23	0.195
24	24	0.0299
25	25	0.553
26	26	0.00743
27	27	0.596
28	28	0.397
29	29	0.282
3	3	0.0838
30	30	0.405
31	31	0.768
32	32	0.258
33	33	0.235
34	34	0.488
35	35	0.666
36	36	0.562
37	37	0.00787
38	38	0.395
39	39	0.225
4	4	0.587
40	40	0.171
41	41	0.773
42	42	0.313
43	43	0.178
44	44	0.495
45	45	0.409
46	46	0.222
47	47	0.21
48	48	0.19
49	49	0.203
5	5	0.173
50	50	0.301
51	51	0.602
52	52	0.0714
53	53	0.44
54	54	0.532
55	55	0.472
56	56	0.279
57	57	0.932
58	58	0.197
59	59	0.0466
6	6	0.666
60	60	0.0137
61	61	0.352
62	62	0.108
63	63	0.142
64	64	0.874
65	65	0.279
66	66	0.728
67	67	0.734
68	68	0.725
69	69	0.256
7	7	0.0413
70	70	0.0175
71	71	0.0426
72	72	0.292
73	73	0.016
74	74	0.427
75	75	0.128
76	76	0.871
77	77	0.126
78	78	0.0644
79	79	0.899
8	8	0.277
80	80	0.891
81	81	0.28
82	82	0.0622
83	83	0.0447
84	84	0.695
85	85	0.0292
86	86	0.295
87	87	0.203
88	88	0.63
89	89	0.156
9	9	0.335
90	90	0.387
91	91	0.371
92	92	0.091
93	93	0.0577
94	94	0.643
95	95	0.0479
96	96	0.238
97	97	0.832
98	98	0.516
99	99	0.194

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12025

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000204 cortical mouse neuron sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000117 (CNS neuron (sensu Vertebrata))
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0002609 (neuron of cerebral cortex)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000203 (mouse neuron samples)
0000204 (cortical mouse neuron sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000337 (neuroblast (sensu Vertebrata))
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000073,UBERON:0000125,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001890,UBERON:0001891,UBERON:0001893,UBERON:0002020,UBERON:0002038,UBERON:0002050,UBERON:0002298,UBERON:0002308,UBERON:0002346,UBERON:0002420,UBERON:0002532,UBERON:0002616,UBERON:0002780,UBERON:0002791,UBERON:0002950,UBERON:0003056,UBERON:0003075,UBERON:0003080,UBERON:0003528,UBERON:0004121,UBERON:0005068,UBERON:0005291,UBERON:0005423,UBERON:0005743,UBERON:0006331,UBERON:0006598,UBERON:0007135,UBERON:0007284
+|DRA_sample_Accession=CAGE@SAMD00005346
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000031,CL:0000034,CL:0000047,CL:0000048,CL:0000055,CL:0000117,CL:0000133,CL:0000144,CL:0000211,CL:0000220,CL:0000221,CL:0000255,CL:0000337,CL:0000393,CL:0000404,CL:0000540,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371,CL:0002614
+|accession_numbers=CAGE;DRX008831;DRR009703;DRZ001128;DRZ002513;DRZ012478;DRZ013863
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002609
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000203,FF:0000204
 |comment=Previously: Mouse Neurons - substantia nigra, donor1
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:55631042..55631102,-!p1@Neurod6!2.79!622.14!Neurod6;;chr11:98190918..98190951,-!p1@Neurod2!2.45!280.17!Neurod2;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!2.38!301.22!Pou3f3;;chr1:179374784..179374800,+!p2@Zfp238!2.36!268.35!Zfp238;;chr3:127336052..127336058,+!p1@Neurog2!2.30!200.54!Neurog2;;chr2:61642631..61642684,+!p1@Tbr1!2.21!159.47!Tbr1;;chr9:118387300..118387317,+!p1@Eomes!2.13!134.90!Eomes;;chr12:28027561..28027591,-!p1@Sox11!2.10!776.53!Sox11;;chr2:38206580..38206600,+!p2@Lhx2!2.01!124.95!Lhx2;;chr2:146047829..146047847,+!p1@Insm1!1.87!128.89!Insm1;;chr2:38206744..38206766,+!p1@Lhx2!1.82!77.77!Lhx2;;chr12:30213247..30213333,+!p1@Myt1l!1.82!65.22!Myt1l;;chr8:87297280..87297326,-!p2@Nfix!1.81!144.02!Nfix;;chrX:58146612..58146615,-!p1@Sox3!1.78!59.83!Sox3;;chrX:90531838..90531861,+!p1@Arx!1.72!63.35!Arx;;chr15:76352832..76352900,-!p1@Scrt1!1.70!48.63!Scrt1;;chr1:57028125..57028149,-!p2@Satb2!1.66!44.38!Satb2;;chr2:79296783..79296801,-!p1@Neurod1!1.65!43.65!Neurod1;;chr2:61642743..61642758,+!p2@Tbr1!1.64!43.03!Tbr1;;chr5:98609885..98609900,+!p1@Prdm8!1.62!40.96!Prdm8;;chr1:179374820..179374831,+!p3@Zfp238!1.61!39.82!Zfp238;;chr3:95032091..95032183,-!p1@Mllt11!1.59!307.96!Mllt11;;chr12:50483639..50483654,+!p1@Foxg1!1.59!38.26!Foxg1;;chr8:12395603..12395621,+!p1@Sox1!1.58!36.81!Sox1;;chr3:17954233..17954249,+!p1@Bhlhe22!1.56!35.57!Bhlhe22;;chr6:85137520..85137563,+!p1@Emx1!1.56!35.25!Emx1;;chr13:56353536..56353542,-!p1@Neurog1!1.55!34.22!Neurog1;;chr6:144157924..144157955,-!p2@Sox5!1.54!41.37!Sox5;;chr7:30088977..30089002,+!p2@Dpf1!1.51!43.13!Dpf1;;chr7:116154364..116154444,+!p1@Tub!1.50!51.64!Tub;;chr14:13178361..13178386,-!p2@Fezf2!1.50!30.80!Fezf2;;chr2:61642558..61642595,+!p3@Tbr1!1.49!29.97!Tbr1;;chr1:173987720..173987729,-!p1@Nhlh1!1.48!29.24!Nhlh1;;chr8:87297330..87297365,-!p5@Nfix!1.47!28.72!Nfix;;chr14:13178147..13178185,-!p1@Fezf2!1.47!28.51!Fezf2;;chr6:144152648..144152680,-!p5@Sox5!1.46!27.89!Sox5;;chr11:21901608..21901634,-!p1@Otx1!1.46!27.89!Otx1;;chr12:109242266..109242295,-!p1@Bcl11b!1.44!214.84!Bcl11b;;chr4:124334894..124334899,+!p1@Pou3f1!1.44!34.32!Pou3f1;;chr4:154335024..154335039,+!p1@Hes5!1.43!31.00!Hes5;;chr4:22415443..22415506,-!p1@Pou3f2!1.43!26.03!Pou3f2;;chr5:24104751..24104773,-!p5@Smarcd3!1.43!25.92!Smarcd3;;chr7:30092993..30093076,+!p1@Dpf1!1.42!43.34!Dpf1;;chr4:82145196..82145229,-!p7@Nfib!1.41!24.47!Nfib;;chr19:59533221..59533271,+!p1@Emx2!1.40!29.55!Emx2;;chr1:179374862..179374873,+!p6@Zfp238!1.39!23.74!Zfp238;;chr2:172375081..172375105,+!p1@Tfap2c!1.39!23.43!Tfap2c;;chr13:29045321..29045337,-!p2@Sox4!1.36!29.34!Sox4;;chr19:7342725..7342784,+!p1@Rcor2!1.35!86.17!Rcor2;;chr4:109650609..109650653,+!p1@Dmrta2!1.34!21.05!Dmrta2;;chr2:71384802..71384815,-!p1@Dlx2!1.33!24.99!Dlx2;;chr12:50483663..50483678,+!p3@Foxg1!1.33!20.22!Foxg1;;chr10:42303385..42303401,-!p1@Nr2e1!1.33!20.22!Nr2e1;;chr1:57028157..57028173,-!p3@Satb2!1.32!19.80!Satb2;;chr1:57029281..57029326,-!p1@Satb2!1.31!30.28!Satb2;;chr9:118387969..118387984,+!p2@Eomes!1.31!19.39!Eomes;;chr11:23978111..23978134,+!p3@Bcl11a!1.29!38.05!Bcl11a;;chr1:179374764..179374776,+!p5@Zfp238!1.29!18.56!Zfp238;;chr4:119960301..119960359,-!p1@Foxo6!1.28!57.96!Foxo6;;chr4:54957886..54957907,+!p3@Zfp462!1.28!31.00!Zfp462;;chr14:13178323..13178347,-!p3@Fezf2!1.28!17.94!Fezf2;;chr18:69680960..69681007,+!p10@Tcf4!1.27!23.02!Tcf4;;chr11:23977742..23977794,+!p6@Bcl11a!1.27!21.88!Bcl11a;;chr2:151906844..151906873,+!p3@Scrt2!1.27!17.83!Scrt2;;chr2:151907546..151907561,+!p1@Scrt2!1.27!17.73!Scrt2;;chr3:101814061..101814094,+!p1@Nhlh2!1.27!17.42!Nhlh2;;chr17:48015839..48015915,-!p3@Foxp4!1.26!20.12!Foxp4;;chr11:98190955..98190968,-!p2@Neurod2!1.26!17.21!Neurod2;;chr5:24104540..24104584,-!p7@Smarcd3!1.26!17.11!Smarcd3;;chr3:34548909..34548927,+!p1@Sox2!1.25!28.00!Sox2;;chr12:50485973..50486015,+!p2@Foxg1!1.25!16.80!Foxg1;;chr4:22415290..22415307,-!p2@Pou3f2!1.25!16.59!Pou3f2;;chr6:55631251..55631265,-!p2@Neurod6!1.23!16.07!Neurod6;;chr12:30219426..30219506,+!p2@Myt1l!1.22!15.66!Myt1l;;chr7:25292160..25292213,+!p3@Zfp428!1.20!36.40!Zfp428;;chr2:38194778..38194798,+!p3@Lhx2!1.20!14.83!Lhx2;;chr1:57028606..57028625,-!p4@Satb2!1.20!14.72!Satb2;;chr12:54349410..54349461,+!p1@Npas3!1.19!17.52!Npas3;;chr19:7342786..7342803,+!p2@Rcor2!1.17!18.35!Rcor2;;chr6:144157968..144157989,-!p7@Sox5!1.17!13.89!Sox5;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!1.16!13.38!Pou3f3;;chr2:115891534..115891589,-!p1@Meis2!1.15!183.43!Meis2;;chr2:152223783..152223812,-!p4@Sox12!1.15!30.38!Sox12;;chr3:17954392..17954407,+!p2@Bhlhe22!1.15!13.06!Bhlhe22;;chr11:23980664..23980706,+!p2@Bcl11a!1.14!56.10!Bcl11a;;chr4:82145232..82145259,-!p9@Nfib!1.14!12.86!Nfib;;chr2:151907338..151907360,+!p2@Scrt2!1.13!12.44!Scrt2;;chr7:30089006..30089022,+!p3@Dpf1!1.13!12.34!Dpf1;;chr4:82151274..82151290,-!p3@Nfib!1.12!197.22!Nfib;;chr12:12948633..12948651,-!p1@Mycn!1.12!115.92!Mycn;;chr14:118636238..118636257,-!p2@Sox21!1.12!12.24!Sox21;;chr4:87678709..87678726,-!p4@Mllt3!1.11!36.81!Mllt3;;chr10:86956396..86956411,-!p1@Ascl1!1.10!18.15!Ascl1;;chr2:181501745..181501778,+!p1@Myt1!1.10!11.61!Myt1;;chr8:87297878..87297935,-!p3@Nfix!1.09!25.40!Nfix;;chr17:37140628..37140631,+!p2@Zfp57!1.09!22.50!Zfp57;;chr18:69753168..69753186,+!p12@Tcf4!1.09!15.35!Tcf4;;chr14:118636214..118636235,-!p1@Sox21!1.09!13.48!Sox21;;chr13:78339382..78339420,-!p3@Nr2f1!1.09!13.17!Nr2f1;;chr2:105515586..105515606,+!p4@Pax6!1.09!11.20!Pax6;;chr18:69753145..69753159,+!p14@Tcf4!1.08!15.03!Tcf4;;chr13:78338076..78338104,-!p4@Nr2f1!1.08!14.00!Nr2f1;;chr19:19185671..19185693,-!p1@Rorb!1.07!26.13!Rorb;;chr4:97248607..97248649,+!p15@Nfia!1.07!10.68!Nfia;;chr13:29045559..29045574,-!p1@Sox4!1.06!869.75!Sox4;;chr7:91558472..91558512,-!p2@Arnt2!1.06!15.03!Arnt2;;chr11:23978229..23978268,+!p8@Bcl11a!1.06!11.92!Bcl11a;;chr17:37139472..37139514,+!p1@Zfp57!1.05!69.16!Zfp57;;chr2:105509045..105509071,+!p1@Pax6!1.04!9.95!Pax6;;chr6:38204274..38204327,-!p3@D630045J12Rik!1.03!19.39!D630045J12Rik;;chr4:150503457..150503498,-!p3@Camta1!1.03!11.09!Camta1;;chr3:34549096..34549111,+!p3@Sox2!1.03!9.75!Sox2;;chr7:25292141..25292158,+!p2@Zfp428!1.02!33.70!Zfp428;;chr13:78339428..78339466,-!p2@Nr2f1!1.02!13.06!Nr2f1;;chr6:144157893..144157905,-!p14@Sox5!1.02!9.44!Sox5;;chr1:179372625..179372654,+!p4@Zfp238!1.01!14.52!Zfp238;;chr8:87298020..87298041,-!p9@Nfix!1.01!9.33!Nfix;;chr11:21901587..21901604,-!p2@Otx1!1.01!9.23!Otx1;;chr6:144157991..144158007,-!p9@Sox5!1.01!9.23!Sox5;;chrX:108009761..108009788,+!p1@Pou3f4!1.01!9.12!Pou3f4;;chr2:65683890..65683907,+!p1@Csrnp3!1.00!17.52!Csrnp3;;chr2:105515635..105515661,+!p5@Pax6!1.00!9.02!Pax6;;chr9:21420744..21420755,+!p3@Smarca4!0.99!25.82!Smarca4;;chr13:15555670..15555771,+!p2@Gli3!0.99!22.50!Gli3;;chr18:69681020..69681032,+!p23@Tcf4!0.99!8.81!Tcf4;;chr3:34549144..34549155,+!p5@Sox2!0.99!8.71!Sox2;;chr6:51382677..51382783,+!p1@Nfe2l3!0.97!22.09!Nfe2l3;;chr2:115890953..115890974,-!p6@Meis2!0.97!12.65!Meis2;;chr12:109242296..109242307,-!p3@Bcl11b!0.97!12.24!Bcl11b;;chr13:48356475..48356492,+!p1@Id4!0.96!180.21!Id4;;chr10:13685585..13685645,+!p2@Hivep2!0.96!29.14!Hivep2;;chr9:18278055..18278126,-!p1@Zfp558!0.96!23.95!Zfp558;;chr2:35960919..35960954,-!p1@Lhx6!0.96!15.45!Lhx6;;chr3:34548946..34548972,+!p2@Sox2!0.96!9.12!Sox2;;chr4:122673278..122673336,+!p1@Mycl1!0.95!25.72!Mycl1;;chr13:78339476..78339515,-!p1@Nr2f1!0.95!12.44!Nr2f1;;chr6:6832076..6832092,-!p1@Dlx5!0.95!9.33!Dlx5;;chr6:55631324..55631335,-!p3@Neurod6!0.95!7.88!Neurod6;;chr11:98603160..98603171,+!p3@Thra!0.94!37.22!Thra;;chr15:76352740..76352781,-!p5@Scrt1!0.94!7.78!Scrt1;;chr4:82151178..82151262,-!p1@Nfib!0.93!314.70!Nfib;;chr14:122874619..122874634,+!p1@Zic2!0.93!7.57!Zic2;;chr1:57028111..57028122,-!p9@Satb2!0.93!7.47!Satb2;;chr14:13178241..13178254,-!p4@Fezf2!0.92!7.36!Fezf2;;chr11:23978270..23978290,+!p9@Bcl11a!0.92!7.26!Bcl11a;;chr8:87238155..87238187,-!p13@Nfix!0.92!7.26!Nfix;;chr4:97444297..97444323,+!p2@Nfia!0.91!114.99!Nfia;;chr15:100430414..100430470,-!p1@Pou6f1!0.91!22.81!Pou6f1;;chr4:54957910..54957954,+!p2@Zfp462!0.91!22.09!Zfp462;;chr4:13670571..13670625,+!p1@Runx1t1!0.91!20.12!Runx1t1;;chr4:13670499..13670526,+!p2@Runx1t1!0.91!16.49!Runx1t1;;chr6:85137491..85137504,+!p3@Emx1!0.91!7.05!Emx1;;chr4:87678673..87678706,-!p6@Mllt3!0.90!15.76!Mllt3;;chr10:42303452..42303470,-!p2@Nr2e1!0.90!6.95!Nr2e1;;chr6:85137505..85137517,+!p2@Emx1!0.89!6.84!Emx1;;chr4:22415600..22415616,-!p3@Pou3f2!0.89!6.84!Pou3f2;;chr1:179372543..179372557,+!p9@Zfp238!0.89!6.74!Zfp238;;chr4:54960870..54960926,+!p1@Zfp462!0.88!25.20!Zfp462;;chr1:170361991..170362015,-!p6@Pbx1!0.88!15.45!Pbx1;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.88!12.75!D630045J12Rik;;chr4:150482563..150482655,-!p2@Camta1!0.87!24.06!Camta1;;chr9:106356278..106356292,+!p3@Pcbp4!0.87!11.41!Pcbp4;;chr5:122499831..122499891,-!p1@Cux2!0.87!10.16!Cux2;;chr13:78339134..78339185,-!p5@Nr2f1!0.87!7.98!Nr2f1;;chr12:28027256..28027282,-!p2@Sox11!0.87!6.43!Sox11;;chr17:35031460..35031518,+!p1@Zbtb12!0.86!33.08!Zbtb12;;chr4:48058129..48058179,+!p2@Nr4a3!0.86!12.34!Nr4a3;;chr2:73109983..73109996,+!p1@Sp9!0.86!6.33!Sp9;;chr10:82226649..82226694,-!p2@Nfyb!0.85!40.96!Nfyb;;chr11:23978078..23978096,+!p4@Bcl11a!0.85!19.39!Bcl11a;;chr5:24107676..24107722,-!p4@Smarcd3!0.85!8.50!Smarcd3;;chr11:23978291..23978323,+!p7@Bcl11a!0.85!6.12!Bcl11a;;chr2:71367142..71367167,+!p2@Dlx1!0.85!6.01!Dlx1;;chrX:66613481..66613562,+!p1@Aff2!0.84!26.96!Aff2;;chr18:69752912..69752928,+!p9@Tcf4!0.84!9.23!Tcf4;;chr1:38684383..38684394,-!p4@Aff3!0.84!8.19!Aff3;;chr4:82151653..82151706,-!p2@Nfib!0.83!174.51!Nfib;;chr3:51144477..51144506,-!p6@Elf2!0.83!9.12!Elf2;;chr12:30220074..30220102,+!p3@Myt1l!0.83!5.70!Myt1l;;chr7:25292331..25292421,+!p1@Zfp428!0.82!42.51!Zfp428;;chr15:75447105..75447159,+!p1@Zfp41!0.82!24.16!Zfp41;;chr2:152223881..152223933,-!p3@Sox12!0.82!20.01!Sox12;;chr7:135019147..135019187,-!p3@Zfp668!0.82!12.86!Zfp668;;chr2:127347067..127347093,-!p1@Kcnip3!0.82!9.64!Kcnip3;;ch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0.68!3.73!Foxg1;;chr4:32325688..32325777,+!p1@Bach2!0.67!37.02!Bach2;;chr2:115891521..115891532,-!p8@Meis2!0.67!5.60!Meis2;;chr19:59533429..59533470,+!p4@Emx2!0.67!3.63!Emx2;;chr4:13678514..13678539,+!p14@Runx1t1!0.67!3.63!Runx1t1;;chr15:76353005..76353021,-!p2@Scrt1!0.67!3.63!Scrt1;;chr2:115891454..115891471,-!p3@Meis2!0.66!12.13!Meis2;;chr4:54960387..54960415,+!p4@Zfp462!0.66!8.40!Zfp462;;chr6:47780508..47780583,-!p1@Zfp786!0.66!7.36!Zfp786;;chr4:32325955..32325971,+!p3@Bach2!0.66!4.87!Bach2;;chr7:11080671..11080750,-!p1@Zik1!0.65!27.89!Zik1;;chr18:69504157..69504184,+!p3@Tcf4!0.65!24.99!Tcf4;;chr19:19185697..19185711,-!p2@Rorb!0.65!4.56!Rorb;;chr12:109241852..109241873,-!p4@Bcl11b!0.65!4.25!Bcl11b;;chr2:181498020..181498040,+!p5@Myt1!0.65!3.42!Myt1;;chr1:179372666..179372678,+!p11@Zfp238!0.65!3.42!Zfp238;;chr2:65768174..65768247,+!p2@Csrnp3!0.65!3.42!Csrnp3;;chr7:38557887..38557910,-!p5@Zfp536!0.65!3.42!Zfp536;;chr12:30213392..30213414,+!p8@Myt1l!0.65!3.42!Myt1l;;chr8:112229478..112229536,+!p1@Zfp821!0.64!34.22!Zfp821;;chr11:98603119..98603130,+!p2@Thra!0.64!33.70!Thra;;chr1:170362242..170362256,-!p3@Pbx1!0.64!28.51!Pbx1;;chr2:44966659..44966675,-!p7@Zeb2!0.64!10.99!Zeb2;;chr10:82226613..82226641,-!p4@Nfyb!0.64!10.27!Nfyb;;chr11:3189683..3189744,+!p2@Patz1!0.64!7.67!Patz1;;chr2:56967334..56967366,-!p1@Nr4a2!0.64!7.57!Nr4a2;;chr4:13670441..13670463,+!p8@Runx1t1!0.64!4.15!Runx1t1;;chr10:127896295..127896304,+!p6@Smarcc2!0.64!4.04!Smarcc2;;chr14:13178294..13178303,-!p7@Fezf2!0.64!3.32!Fezf2;;chr8:12395629..12395644,+!p6@Sox1!0.64!3.32!Sox1;;chr2:151906968..151906988,+!p5@Scrt2!0.64!3.32!Scrt2;;chr6:144152701..144152714,-!p24@Sox5!0.64!3.32!Sox5;;chr1:170362040..170362113,-!p2@Pbx1!0.63!30.38!Pbx1;;chr2:115891409..115891425,-!p2@Meis2!0.63!10.89!Meis2;;chr1:170361730..170361769,-!p7@Pbx1!0.63!8.40!Pbx1;;chr17:35031524..35031539,+!p4@Zbtb12!0.63!4.46!Zbtb12;;chr1:140739014..140739032,-!p1@Lhx9!0.63!4.35!Lhx9;;chr16:91270004..91270023,+!p1@Olig1!0.63!3.84!Olig1;;chr4:135841976..135842029,+!p2@Zfp46!0.62!27.89!Zfp46;;chr4:126703093..126703158,+!p3@Sfpq!0.62!10.37!Sfpq;;chr4:87678743..87678767,-!p7@Mllt3!0.62!8.50!Mllt3;;chr13:29044875..29044928,-!p4@Sox4!0.62!4.56!Sox4;;chr2:152223734..152223756,-!p6@Sox12!0.62!3.94!Sox12;;chr14:13178608..13178630,-!p5@Fezf2!0.62!3.21!Fezf2;;chr7:17062114..17062141,-!p1@Npas1!0.62!3.21!Npas1;;chr11:23978022..23978076,+!p1@Bcl11a!0.61!79.74!Bcl11a;;chr18:69504195..69504213,+!p4@Tcf4!0.61!16.49!Tcf4;;chr8:87324171..87324182,-!p6@Nfix!0.61!5.81!Nfix;;chr8:12395670..12395682,+!p3@Sox1!0.61!3.11!Sox1;;chr5:122345353..122345358,-!p5@Cux2!0.61!3.11!Cux2;;chr3:127336115..127336130,+!p4@Neurog2!0.61!3.11!Neurog2;;chr13:78338032..78338049,-!p8@Nr2f1!0.61!3.11!Nr2f1;;chr1:93309740..93309811,-!p1@Hes6!0.60!71.96!Hes6;;chr6:14851440..14851497,+!p2@Foxp2!0.60!8.30!Foxp2;;chr10:13686815..13686846,+!p3@Hivep2!0.60!7.57!Hivep2;;chr5:122500142..122500167,-!p2@Cux2!0.60!7.26!Cux2;;chr14:76814784..76814803,+!p7@Tsc22d1!0.60!6.22!Tsc22d1;;chr10:13685657..13685677,+!p7@Hivep2!0.60!4.04!Hivep2;;chr13:29045174..29045188,-!p7@Sox4!0.60!3.73!Sox4;;chr12:50483778..50483789,+!p6@Foxg1!0.60!3.01!Foxg1;;chr12:28027310..28027322,-!p5@Sox11!0.60!3.01!Sox11;;chrX:108009734..108009752,+!p2@Pou3f4!0.60!3.01!Pou3f4;;chr7:52471143..52471186,+!p1@Tead2!0.59!37.74!Tead2;;chr2:44968721..44968734,-!p6@Zeb2!0.59!12.75!Zeb2;;chr4:154010918..154010931,-!p1@Prdm16!0.59!9.85!Prdm16;;chr18:65741935..65741964,+!p2@Zfp532!0.59!9.12!Zfp532;;chr10:127896265..127896276,+!p4@Smarcc2!0.59!5.60!Smarcc2;;chr7:25292118..25292129,+!p8@Zfp428!0.59!3.63!Zfp428;;chr10:129717274..129717298,-!p1@Neurod4!0.59!2.90!Neurod4;;chr13:78338057..78338069,-!p11@Nr2f1!0.59!2.90!Nr2f1;;chr11:50641183..50641244,-!p1@Zfp354c!0.58!26.65!Zfp354c;;chr15:75447162..75447217,+!p2@Zfp41!0.58!9.54!Zfp41;;chr14:65568567..65568588,-!p3@Hmbox1!0.58!4.67!Hmbox1;;chr4:82151126..82151133,-!p8@Nfib!0.58!3.84!Nfib;;chr7:25292223..25292234,+!p7@Zfp428!0.58!3.73!Zfp428;;chr11:23978353..23978379,+!p10@Bcl11a!0.58!3.53!Bcl11a;;chr18:69752864..69752875,+!p25@Tcf4!0.58!2.80!Tcf4;;chr13:44936077..44936096,+!p9@Jarid2!0.58!2.80!Jarid2;;chr1:170362273..170362317,-!p1@Pbx1!0.57!96.12!Pbx1;;chr7:16760707..16760787,+!p1@LOC100046899,p1@Meis3!0.57!37.74!Meis3;;chr6:92041399..92041417,+!p2@Nr2c2!0.57!10.89!Nr2c2;;chr12:3891753..3891801,+!p4@Dnmt3a!0.57!4.87!Dnmt3a;;chr13:44936126..44936164,+!p6@Jarid2!0.57!3.21!Jarid2;;chr1:120950149..120950160,-!p7@Gli2!0.57!3.01!Gli2;;chr13:78335687..78335701,-!p16@Nr2f1!0.57!2.70!Nr2f1;;chr3:17954496..17954515,+!p3@Bhlhe22!0.57!2.70!Bhlhe22;;chr2:71366660..71366702,+!p3@Dlx1!0.57!2.70!Dlx1;;chr12:109241897..109241915,-!p6@Bcl11b!0.57!2.70!Bcl11b;;chr2:152223441..152223465,-!p2@Sox12!0.56!13.06!Sox12;;chr7:37483021..37483078,+!p1@Tshz3!0.56!9.54!Tshz3;;chr3:94641455..94641486,+!p4@Pogz!0.56!8.19!Pogz;;chr4:128483731..128483757,-!p4@Zfp362!0.56!6.95!Zfp362;;chr4:126700576..126700598,+!p7@Sfpq!0.56!5.50!Sfpq;;chr2:65683842..65683856,+!p3@Csrnp3!0.5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+|ffid_belonging_in_development=CL:0000133,CL:0000337,CL:0000031,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:11724-123D5
-|is_a=EFO:0002091;;FF:0000002;;FF:0000103;;FF:0000204
+|is_a=EFO:0002091;;FF:0000204
+|is_obsolete=
+|library_id=CNhs12025
+|library_id_phase_based=2:CNhs12025
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11724
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11724
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm9.nobarcode.rdna.fa.gz
 |name=Mouse Neurons - cortical, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12025,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.0769340436171085,0,0,0,0.0428469550828748,0,-0.0341763248624827,0,0,0,0,-0.00249554172308415,0,0,0,0,0,0,0.117075530684408,0,0,0,0,0,0,0,0,0,0,0,0,0.134153895493424,-0.476579093650574,0,0,0,0,0,-0.0289377219282723,0.15068229631276,0.0830554630333198,-0.230932301070944,0.475389123404048,0.210087710822348,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,0.010854767423356,-0.267803702256511,-0.158091042771083,0.0311678345987045,0,0,0.13667273944311,0.0428469550828748,0.0428469550828748,0,0.0785503219393637,0.0566784672946287,0.14934288067383,-0.0359846397570327,0,0,0,0,0,0,0.0806079264115185,-0.0562210497579834,-0.009116048372359,0,0,0,0.210087710822348,0
 |rna_box=123
 |rna_catalog_number=custom
@@ Line 57: / Line 76: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=cortex
 |top_motifs=LHX3,4:3.83895722072;NKX6-1,2:2.66029276989;SOX2:2.4109368412;OCT4_SOX2{dimer}:2.34257055869;TFDP1:2.19601236743;LEF1_TCF7_TCF7L1,2:2.09819158589;POU5F1:2.05562419203;MZF1:2.05439621439;POU1F1:1.98937800062;BREu{core}:1.92109477371;EN1,2:1.79615149272;MED-1{core}:1.7952731859;HMGA1,2:1.79152197024;ZFP161:1.7684738208;FOXQ1:1.74582294317;ONECUT1,2:1.72863143422;ZNF384:1.72447772862;PRDM1:1.71994541754;UFEwm:1.69138002858;POU6F1:1.59438744763;SOX17:1.58514121308;NRF1:1.54687928762;SOX{8,9,10}:1.52795010344;POU3F1..4:1.51732056807;PAX4:1.50700804737;FOXD3:1.4897628461;AHR_ARNT_ARNT2:1.46846081994;CUX2:1.45450953286;MTE{core}:1.44202101842;ZNF143:1.39195866331;PRRX1,2:1.38786387666;PAX8:1.31487577178;CDC5L:1.31048662235;TFAP2B:1.29635478677;HOXA9_MEIS1:1.29337631557;PPARG:1.28374374365;VSX1,2:1.27913431837;NANOG{mouse}:1.21275998255;KLF4:1.1745480246;ZBTB6:1.16512428114;NANOG:1.15753267888;HOX{A5,B5}:1.15488944093;EGR1..3:1.15341419689;PATZ1:1.1048939505;POU2F1..3:1.0821905343;YY1:1.05714851878;ZBTB16:1.04376593439;NFY{A,B,C}:1.01360694067;TEF:0.987617606611;RREB1:0.969135299992;CDX1,2,4:0.965139162523;NKX2-3_NKX2-5:0.920216024111;ADNP_IRX_SIX_ZHX:0.90588462146;RBPJ:0.898945226826;NKX3-2:0.872078375374;HIC1:0.862912315869;SMAD1..7,9:0.859430091211;RORA:0.85897893891;DBP:0.771278665793;BPTF:0.740419870605;ZNF423:0.714016323117;RFX1:0.691876702349;GTF2I:0.677233450019;PITX1..3:0.664136467131;ELK1,4_GABP{A,B1}:0.640274312832;GFI1B:0.627275166084;NHLH1,2:0.61862735181;PAX6:0.615822322048;REST:0.587852833421;HOX{A4,D4}:0.558413234308;STAT1,3:0.491428984259;JUN:0.490867698199;EVI1:0.476935364323;GATA4:0.471385719503;CREB1:0.470516952216;MAZ:0.457978737223;ATF5_CREB3:0.441794548363;IKZF2:0.441175128087;NR3C1:0.410877098168;GTF2A1,2:0.368934787864;PAX5:0.360464783612;GCM1,2:0.360307286468;EP300:0.346418677488;NKX2-2,8:0.337549574028;E2F1..5:0.331808030099;HMX1:0.331089979597;NR5A1,2:0.314035442868;FOXP3:0.301157664491;ALX1:0.293167503897;SOX5:0.287206054262;ZIC1..3:0.280932757116;ATF2:0.27537675892;FOXL1:0.250612806121;CRX:0.211318464165;NFIX:0.202130344046;AIRE:0.200077312992;HAND1,2:0.188422490734;MYB:0.183228222842;RFX2..5_RFXANK_RFXAP:0.183075157721;GFI1:0.173832691118;HSF1,2:0.163035879943;T:0.152669422746;FOX{F1,F2,J1}:0.121467518702;ARID5B:0.0630736326967;GZF1:0.0627705758352;NFE2L1:0.0269461236603;STAT5{A,B}:0.0229724956571;LMO2:0.0124463800227;HBP1_HMGB_SSRP1_UBTF:-0.0478128007343;MYFfamily:-0.0546511239095;HIF1A:-0.0674825693806;FOXP1:-0.0704303579169;TGIF1:-0.0774085209036;NKX3-1:-0.0891651677626;ATF4:-0.128434643952;TLX1..3_NFIC{dimer}:-0.139543377553;MAFB:-0.146517317315;SP1:-0.159714374609;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.167091998675;FOX{I1,J2}:-0.208793620813;NKX2-1,4:-0.225474109917;bHLH_family:-0.229987607732;RXR{A,B,G}:-0.235933787003;NFIL3:-0.238679555051;FOXM1:-0.245359578275;PBX1:-0.260306119057;MTF1:-0.262883726005;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.263170162525;TFAP2{A,C}:-0.264726006655;NR1H4:-0.266149477644;NR6A1:-0.304926362386;HES1:-0.3726437887;TOPORS:-0.374558206038;SPIB:-0.409547339349;TAL1_TCF{3,4,12}:-0.424791077726;RUNX1..3:-0.483691778084;ALX4:-0.494934411072;TLX2:-0.504936548511;FOXN1:-0.54965033469;MEF2{A,B,C,D}:-0.569958341556;FOXO1,3,4:-0.590581456867;HLF:-0.597527348497;SPI1:-0.601452900102;ELF1,2,4:-0.620499145775;NFKB1_REL_RELA:-0.626019651151;GATA6:-0.626780017799;HNF4A_NR2F1,2:-0.63961817632;SPZ1:-0.669907473483;AR:-0.684356846867;FOXA2:-0.685547273444;HNF1A:-0.712390613601;CEBPA,B_DDIT3:-0.73732642033;XCPE1{core}:-0.738717797719;MYBL2:-0.738787707458;MYOD1:-0.741344954306;PAX2:-0.742060857693;PAX1,9:-0.752278266075;ZNF238:-0.785863854779;PDX1:-0.80920762877;SNAI1..3:-0.812604557422;TFAP4:-0.814052145945;ZEB1:-0.834660561931;IKZF1:-0.857806168908;TEAD1:-0.885268426573;NFATC1..3:-0.887304680815;GLI1..3:-0.908348976976;TP53:-0.915606838165;ESRRA:-0.932369881542;ESR1:-0.998263924246;DMAP1_NCOR{1,2}_SMARC:-1.00165855751;TBX4,5:-1.03224825946;TBP:-1.04186045497;NFE2:-1.04375642871;ETS1,2:-1.06073125461;SREBF1,2:-1.0719913945;NFE2L2:-1.07942867417;RXRA_VDR{dimer}:-1.11239662458;ZNF148:-1.11365969555;EBF1:-1.13804688783;BACH2:-1.18278049385;FOX{D1,D2}:-1.19424934614;FOS_FOS{B,L1}_JUN{B,D}:-1.21665533262;IRF1,2:-1.25513894887;TFCP2:-1.33990059653;FOSL2:-1.34782558746;STAT2,4,6:-1.3879193054;IRF7:-1.45334838515;ATF6:-1.47090111824;SRF:-1.67449890937
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11724-123D5;search_select_hide=table117:11724-123D5
 }}

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FF:11724-123D5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:16, 4 June 2020

CNhs12025

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0