FF:11788-124B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005516 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008165;DRR009037;DRZ000462;DRZ001847;DRZ011812;DRZ013197 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011111 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.70!497.50!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.56!363.05!PLEK;;chr12:54778471..54778528,-!p1@ZNF385A!2.25!176.13!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.15!140.64!IRF8;;chr14:75745523..75745537,+!p1@FOS!1.98!10441.96!FOS;;chr7:115670804..115670825,-!p1@TFEC!1.97!91.44!TFEC;;chr12:54694758..54694805,-!p1@NFE2!1.91!95.25!NFE2;;chr7:50344289..50344323,+!p1@IKZF1!1.89!76.83!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!1.87!73.13!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.68!47.40!OLIG1;;chr11:47399947..47399961,-!p3@SPI1!1.64!42.68!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.60!214.66!NCOA4;;chr11:47399996..47400014,-!p4@SPI1!1.55!34.15!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.51!402.59!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.47!142.77!NR4A2;;chr2:70142232..70142251,+!p1@MXD1!1.46!151.19!MXD1;;chr7:128577972..128578047,+!p1@IRF5!1.45!42.12!IRF5;;chr20:39317868..39317884,-!p1@MAFB!1.44!301.94!MAFB;;chr5:88178983..88179012,-!p1@MEF2C!1.44!196.58!MEF2C;;chr11:47400032..47400043,-!p5@SPI1!1.41!24.71!SPI1;;chr6:144385698..144385742,-!p2@PLAGL1!1.40!29.43!PLAGL1;;chr19:45971246..45971265,+!p1@FOSB!1.35!380.91!FOSB;;chr12:54694807..54694832,-!p3@NFE2!1.35!21.23!NFE2;;chr7:149470641..149470694,-!p1@ZNF467!1.34!93.01!ZNF467;;chr19:13213662..13213686,-!p1@LYL1!1.34!30.78!LYL1;;chr11:47400045..47400060,-!p6@SPI1!1.34!21.12!SPI1;;chr12:72056800..72056834,+!p1@THAP2!1.33!27.07!THAP2;;chr21:34442540..34442560,+!p2@OLIG1!1.33!20.56!OLIG1;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.66!KDM5D;;chr19:12902289..12902307,+!p1@JUNB!1.31!4260.06!JUNB;;chr14:75746722..75746777,+!p2@FOS!1.31!24.94!FOS;;chr9:110250697..110250738,-!p2@KLF4!1.31!22.80!KLF4;;chr2:28618532..28618610,+!p4@FOSL2!1.29!31.56!FOSL2;;chr7:50343634..50343717,+!p2@IKZF1!1.29!18.31!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.25!16.85!PLEK;;chr9:110252035..110252057,-!p1@KLF4!1.23!250.27!KLF4;;chr19:33793430..33793447,-!p1@CEBPA!1.23!67.28!CEBPA;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.03!POU2F2;;chr10:35416142..35416169,+!p3@CREM!1.22!41.00!CREM;;chr5:176735063..176735088,-!p2@MXD3!1.22!15.73!MXD3;;chr11:128563948..128564003,+!p1@FLI1!1.20!175.01!FLI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.20!14.94!ZNF385A;;chr9:102584262..102584276,+!p1@NR4A3!1.18!31.68!NR4A3;;chr4:106068026..106068084,+!p1@TET2!1.17!122.33!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.17!87.84!ELF1;;chr2:157198916..157198978,-!p2@NR4A2!1.17!47.74!NR4A2;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.40!CEBPB;;chr12:52445218..52445237,+!p1@NR4A1!1.15!162.65!NR4A1;;chr9:117150254..117150271,-!p1@AKNA!1.14!34.82!AKNA;;chr20:48807430..48807439,+!p8@CEBPB!1.14!19.43!CEBPB;;chr7:28725715..28725727,+!p3@CREB5!1.13!14.60!CREB5;;chr17:38497662..38497713,+!p4@RARA!1.13!14.38!RARA;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!75.71!CSRNP1;;chr21:36421535..36421610,-!p2@RUNX1!1.12!43.92!RUNX1;;chr2:208031943..208031978,-!p5@KLF7!1.12!16.29!KLF7;;chr16:88752889..88752921,-!p1@SNAI3!1.12!14.27!SNAI3;;chr19:54041669..54041697,+!p2@ZNF331!1.11!11.91!ZNF331;;chr8:48650715..48650735,-!p1@CEBPD!1.10!1478.92!CEBPD;;chr10:94449703..94449718,+!p1@HHEX!1.10!45.16!HHEX;;chr10:51572339..51572376,+!p4@NCOA4!1.10!26.06!NCOA4;;chr9:102584241..102584261,+!p4@NR4A3!1.09!17.52!NR4A3;;chr12:54694653..54694672,-!p2@NFE2!1.08!11.01!NFE2;;chr2:61108695..61108753,+!p1@REL!1.07!74.36!REL;;chr5:88179017..88179046,-!p2@MEF2C!1.07!43.81!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!1.07!41.34!TSC22D3;;chr2:145277882..145277967,-!p3@ZEB2!1.07!18.65!ZEB2;;chr6:44233252..44233296,-!p1@NFKBIE!1.06!103.57!NFKBIE;;chr7:28725740..28725778,+!p1@CREB5!1.06!95.25!CREB5;;chr17:38498594..38498661,+!p2@RARA!1.05!34.37!RARA;;chr1:40367530..40367597,-!p1@MYCL1!1.05!18.65!MYCL1;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.86!PRDM1;;chr14:35872962..35873025,-!p3@NFKBIA!1.02!24.38!NFKBIA;;chr14:75988771..75988826,+!p1@BATF!1.01!12.47!BATF;;chr12:72056773..72056796,+!p3@THAP2!1.01!12.02!THAP2;;chr19:45251395..45251432,+!p8@BCL3!1.01!9.21!BCL3;;chr14:35873947..35873965,-!p1@NFKBIA!1.00!584.90!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.00!16.96!RUNX3;;chr6:15246261..15246312,+!p1@JARID2!0.99!217.24!JARID2;;chr8:48650697..48650708,-!p2@CEBPD!0.98!67.17!CEBPD;;chr7:149470540..149470596,-!p2@ZNF467!0.98!11.23!ZNF467;;chr6:391743..391759,+!p1@IRF4!0.98!8.65!IRF4;;chr3:101568349..101568365,+!p1@NFKBIZ!0.97!444.15!NFKBIZ;;chr1:156470515..156470542,-!p2@MEF2D!0.97!44.48!MEF2D;;chr20:56195474..56195506,-!p1@ZBP1!0.97!8.42!ZBP1;;chr7:137620684..137620711,-!p4@CREB3L2!0.97!8.42!CREB3L2;;chr19:54058073..54058088,+!p1@ZNF331!0.97!8.31!ZNF331;;chr14:75746340..75746368,+!p3@FOS!0.97!8.31!FOS;;chr7:150974206..150974255,-!p1@SMARCD3!0.96!51.78!SMARCD3;;chr6:15246200..15246214,+!p2@JARID2!0.96!22.80!JARID2;;chr19:36391434..36391450,-!p1@NFKBID!0.95!15.84!NFKBID;;chr4:185395633..185395651,-!p2@IRF2!0.95!12.92!IRF2;;chr16:3313791..3313834,+!p2@ZNF263!0.94!17.41!ZNF263;;chr16:31885093..31885165,+!p1@ZNF267!0.93!118.39!ZNF267;;chr2:238600933..238600985,+!p3@LRRFIP1!0.93!42.24!LRRFIP1;;chr8:71316428..71316459,-!p2@NCOA2!0.93!13.03!NCOA2;;chr10:31288398..31288455,-!p2@ZNF438!0.93!8.87!ZNF438;;chr11:47399920..47399931,-!p7@SPI1!0.93!7.53!SPI1;;chrX:106960285..106960299,-!p1@TSC22D3!0.92!203.99!TSC22D3;;chr2:208031542..208031595,-!p2@KLF7!0.92!53.47!KLF7;;chrX:129244454..129244488,-!p1@ELF4!0.91!53.92!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!0.91!46.05!NFKB2;;chr2:145271342..145271377,-!p5@ZEB2!0.91!7.08!ZEB2;;chr2:28615716..28615733,+!p1@FOSL2!0.90!347.99!FOSL2;;chr5:131826457..131826514,-!p1@IRF1!0.90!284.08!IRF1;;chr11:615942..615957,-!p1@IRF7!0.90!69.08!IRF7;;chr19:45252008..45252024,+!p2@BCL3!0.90!24.04!BCL3;;chr5:88179195..88179224,-!p3@MEF2C!0.90!11.23!MEF2C;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.96!ZFY;;chr20:48807351..48807384,+!p1@CEBPB!0.89!725.87!CEBPB;;chr17:38498402..38498445,+!p3@RARA!0.89!25.61!RARA;;chr10:35484053..35484076,+!p1@CREM!0.89!17.52!CREM;;chr2:231090433..231090469,+!p1@SP140!0.89!6.74!SP140;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.35!KLF3;;chr19:45250948..45250998,+!p3@BCL3!0.88!17.41!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!0.88!6.63!IKZF1;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.56!IFI16;;chr6:106534230..106534254,+!p2@PRDM1!0.87!16.62!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!0.87!7.98!IRF2;;chr10:135044190..135044229,+!p3@UTF1!0.87!6.40!UTF1;;chr14:75747250..75747267,+!p5@FOS!0.87!6.40!FOS;;chr2:8822176..8822196,+!p1@ID2!0.86!937.38!ID2;;chr1:8484007..8484061,-!p13@RERE!0.86!8.20!RERE;;chr19:13213954..13214021,-!p4@LYL1!0.86!6.29!LYL1;;chr12:11802753..11802834,+!p2@ETV6!0.85!31.45!ETV6;;chr20:48807615..48807644,+!p6@CEBPB!0.85!10.56!CEBPB;;chr4:106066730..106066754,+!p6@TET2!0.85!6.07!TET2;;chr21:30671235..30671253,+!p1@BACH1!0.84!79.87!BACH1;;chr9:110250629..110250642,-!p7@KLF4!0.84!5.84!KLF4;;chr12:54694738..54694749,-!p5@NFE2!0.84!5.84!NFE2;;chr2:70142189..70142223,+!p2@MXD1!0.83!43.70!MXD1;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.77!KLF4;;chr14:64971288..64971316,-!p2@ZBTB25!0.82!18.42!ZBTB25;;chr12:72056749..72056767,+!p6@THAP2!0.82!6.29!THAP2;;chr19:16435625..16435682,+!p1@KLF2!0.81!189.61!KLF2;;chr20:48807875..48807982,+!p2@CEBPB!0.81!129.51!CEBPB;;chr2:97202480..97202499,+!p1@ARID5A!0.81!59.76!ARID5A;;chr3:187463179..187463201,-!p2@BCL6!0.81!24.38!BCL6;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.73!HHEX;;chr14:35872453..35872485,-!p2@NFKBIA!0.81!14.27!NFKBIA;;chr2:145282041..145282092,-!p8@ZEB2!0.81!8.54!ZEB2;;chr19:13213704..13213726,-!p3@LYL1!0.81!7.41!LYL1;;chr14:75747296..75747329,+!p4@FOS!0.81!5.50!FOS;;chr2:238600998..238601013,+!p5@LRRFIP1!0.81!5.50!LRRFIP1;;chr21:40177892..40177903,+!p2@ETS2!0.80!23.03!ETS2;;chr2:60780607..60780624,-!p2@BCL11A!0.80!17.41!BCL11A;;chr1:158979851..158979865,+!p5@IFI16!0.80!12.47!IFI16;;chr19:45972701..45972774,+!p2@FOSB!0.80!7.41!FOSB;;chr19:50432132..50432217,+!p2@ATF5!0.80!6.52!ATF5;;chr10:3827371..3827386,-!p2@KLF6!0.79!46.84!KLF6;;chr2:208394817..208394834,+!p3@CREB1!0.79!22.24!CREB1;;chr9:94186085..94186096,-!p3@NFIL3!0.79!8.99!NFIL3;;chr13:41593405..41593416,-!p9@ELF1!0.79!5.17!ELF1;;chr3:187463248..187463264,-!p1@BCL6!0.78!117.05!BCL6;;chr9:117160738..117160782,-!p2@AKNA!0.78!22.69!AKNA;;chr3:39195139..39195150,-!p3@CSRNP1!0.78!6.63!CSRNP1;;chr6:15246741..15246765,+!p9@JARID2!0.78!5.05!JARID2;;chr14:75746781..75746799,+!p6@FOS!0.78!5.05!FOS;;chr6:12011943..12012015,+!p2@HIVEP1!0.77!17.19!HIVEP1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.77!8.42!PCBP2;;chr5:142782823..142782854,-!p3@NR3C1!0.77!7.30!NR3C1;;chr10:35416125..35416138,+!p10@CREM!0.77!5.84!CREM;;chr10:35416223..35416234,+!p12@CREM!0.77!4.94!CREM;;chr6:15246799..15246810,+!p18@JARID2!0.77!4.83!JARID2;;chr21:30672433..30672464,+!p6@BACH1!0.77!4.83!BACH1;;chr10:104155480..104155534,+!p2@NFKB2!0.76!33.70!NFKB2;;chrX:106960221..106960236,-!p3@TSC22D3!0.76!14.04!TSC22D3;;chr18:3448455..3448480,+!p5@TGIF1!0.76!9.21!TGIF1;;chr14:62162258..62162269,+!p2@HIF1A!0.75!48.75!HIF1A;;chr9:110251836..110251887,-!p4@KLF4!0.75!6.29!KLF4;;chr19:10416315..10416333,-!p1@ZGLP1!0.75!4.61!ZGLP1;;chr2:231084659..231084721,-!p1@SP110!0.74!117.61!SP110;;chr9:94186101..94186122,-!p1@NFIL3!0.74!70.32!NFIL3;;chr3:39195037..39195069,-!p2@CSRNP1!0.74!30.67!CSRNP1;;chr2:60780753..60780800,-!p1@BCL11A!0.74!24.15!BCL11A;;chr8:48650982..48651023,-!p3@CEBPD!0.74!12.02!CEBPD;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.21!NR4A3;;chr2:185463247..185463263,+!p1@ZNF804A!0.74!8.42!ZNF804A;;chr18:3448422..3448439,+!p11@TGIF1!0.74!6.96!TGIF1;;chr19:53039233..53039247,+!p2@ZNF808!0.74!6.96!ZNF808;;chr17:38497715..38497734,+!p8@RARA!0.74!4.49!RARA;;chr12:53774567..53774658,+!p2@SP1!0.73!23.59!SP1;;chr14:65569101..65569119,-!p3@MAX!0.73!15.16!MAX;;chr1:221052733..221052749,+!p2@HLX!0.73!5.84!HLX;;chr13:41593392..41593403,-!p7@ELF1!0.73!4.38!ELF1;;chr2:174828545..174828644,-!p1@SP3!0.72!73.24!SP3;;chr21:30671690..30671762,+!p2@BACH1!0.72!16.06!BACH1;;chr3:187463220..187463232,-!p3@BCL6!0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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.70!497.50!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.56!363.05!PLEK;;chr12:54778471..54778528,-!p1@ZNF385A!2.25!176.13!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.15!140.64!IRF8;;chr14:75745523..75745537,+!p1@FOS!1.98!10441.96!FOS;;chr7:115670804..115670825,-!p1@TFEC!1.97!91.44!TFEC;;chr12:54694758..54694805,-!p1@NFE2!1.91!95.25!NFE2;;chr7:50344289..50344323,+!p1@IKZF1!1.89!76.83!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!1.87!73.13!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.68!47.40!OLIG1;;chr11:47399947..47399961,-!p3@SPI1!1.64!42.68!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.60!214.66!NCOA4;;chr11:47399996..47400014,-!p4@SPI1!1.55!34.15!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.51!402.59!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.47!142.77!NR4A2;;chr2:70142232..70142251,+!p1@MXD1!1.46!151.19!MXD1;;chr7:128577972..128578047,+!p1@IRF5!1.45!42.12!IRF5;;chr20:39317868..39317884,-!p1@MAFB!1.44!301.94!MAFB;;chr5:88178983..88179012,-!p1@MEF2C!1.44!196.58!MEF2C;;chr11:47400032..47400043,-!p5@SPI1!1.41!24.71!SPI1;;chr6:144385698..144385742,-!p2@PLAGL1!1.40!29.43!PLAGL1;;chr19:45971246..45971265,+!p1@FOSB!1.35!380.91!FOSB;;chr12:54694807..54694832,-!p3@NFE2!1.35!21.23!NFE2;;chr7:149470641..149470694,-!p1@ZNF467!1.34!93.01!ZNF467;;chr19:13213662..13213686,-!p1@LYL1!1.34!30.78!LYL1;;chr11:47400045..47400060,-!p6@SPI1!1.34!21.12!SPI1;;chr12:72056800..72056834,+!p1@THAP2!1.33!27.07!THAP2;;chr21:34442540..34442560,+!p2@OLIG1!1.33!20.56!OLIG1;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.66!KDM5D;;chr19:12902289..12902307,+!p1@JUNB!1.31!4260.06!JUNB;;chr14:75746722..75746777,+!p2@FOS!1.31!24.94!FOS;;chr9:110250697..110250738,-!p2@KLF4!1.31!22.80!KLF4;;chr2:28618532..28618610,+!p4@FOSL2!1.29!31.56!FOSL2;;chr7:50343634..50343717,+!p2@IKZF1!1.29!18.31!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.25!16.85!PLEK;;chr9:110252035..110252057,-!p1@KLF4!1.23!250.27!KLF4;;chr19:33793430..33793447,-!p1@CEBPA!1.23!67.28!CEBPA;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.03!POU2F2;;chr10:35416142..35416169,+!p3@CREM!1.22!41.00!CREM;;chr5:176735063..176735088,-!p2@MXD3!1.22!15.73!MXD3;;chr11:128563948..128564003,+!p1@FLI1!1.20!175.01!FLI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.20!14.94!ZNF385A;;chr9:102584262..102584276,+!p1@NR4A3!1.18!31.68!NR4A3;;chr4:106068026..106068084,+!p1@TET2!1.17!122.33!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.17!87.84!ELF1;;chr2:157198916..157198978,-!p2@NR4A2!1.17!47.74!NR4A2;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.40!CEBPB;;chr12:52445218..52445237,+!p1@NR4A1!1.15!162.65!NR4A1;;chr9:117150254..117150271,-!p1@AKNA!1.14!34.82!AKNA;;chr20:48807430..48807439,+!p8@CEBPB!1.14!19.43!CEBPB;;chr7:28725715..28725727,+!p3@CREB5!1.13!14.60!CREB5;;chr17:38497662..38497713,+!p4@RARA!1.13!14.38!RARA;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!75.71!CSRNP1;;chr21:36421535..36421610,-!p2@RUNX1!1.12!43.92!RUNX1;;chr2:208031943..208031978,-!p5@KLF7!1.12!16.29!KLF7;;chr16:88752889..88752921,-!p1@SNAI3!1.12!14.27!SNAI3;;chr19:54041669..54041697,+!p2@ZNF331!1.11!11.91!ZNF331;;chr8:48650715..48650735,-!p1@CEBPD!1.10!1478.92!CEBPD;;chr10:94449703..94449718,+!p1@HHEX!1.10!45.16!HHEX;;chr10:51572339..51572376,+!p4@NCOA4!1.10!26.06!NCOA4;;chr9:102584241..102584261,+!p4@NR4A3!1.09!17.52!NR4A3;;chr12:54694653..54694672,-!p2@NFE2!1.08!11.01!NFE2;;chr2:61108695..61108753,+!p1@REL!1.07!74.36!REL;;chr5:88179017..88179046,-!p2@MEF2C!1.07!43.81!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!1.07!41.34!TSC22D3;;chr2:145277882..145277967,-!p3@ZEB2!1.07!18.65!ZEB2;;chr6:44233252..44233296,-!p1@NFKBIE!1.06!103.57!NFKBIE;;chr7:28725740..28725778,+!p1@CREB5!1.06!95.25!CREB5;;chr17:38498594..38498661,+!p2@RARA!1.05!34.37!RARA;;chr1:40367530..40367597,-!p1@MYCL1!1.05!18.65!MYCL1;;chr6:106534192..106534224,+!p1@PRDM1!1.03!27.86!PRDM1;;chr14:35872962..35873025,-!p3@NFKBIA!1.02!24.38!NFKBIA;;chr14:75988771..75988826,+!p1@BATF!1.01!12.47!BATF;;chr12:72056773..72056796,+!p3@THAP2!1.01!12.02!THAP2;;chr19:45251395..45251432,+!p8@BCL3!1.01!9.21!BCL3;;chr14:35873947..35873965,-!p1@NFKBIA!1.00!584.90!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.00!16.96!RUNX3;;chr6:15246261..15246312,+!p1@JARID2!0.99!217.24!JARID2;;chr8:48650697..48650708,-!p2@CEBPD!0.98!67.17!CEBPD;;chr7:149470540..149470596,-!p2@ZNF467!0.98!11.23!ZNF467;;chr6:391743..391759,+!p1@IRF4!0.98!8.65!IRF4;;chr3:101568349..101568365,+!p1@NFKBIZ!0.97!444.15!NFKBIZ;;chr1:156470515..156470542,-!p2@MEF2D!0.97!44.48!MEF2D;;chr20:56195474..56195506,-!p1@ZBP1!0.97!8.42!ZBP1;;chr7:137620684..137620711,-!p4@CREB3L2!0.97!8.42!CREB3L2;;chr19:54058073..54058088,+!p1@ZNF331!0.97!8.31!ZNF331;;chr14:75746340..75746368,+!p3@FOS!0.97!8.31!FOS;;chr7:150974206..150974255,-!p1@SMARCD3!0.96!51.78!SMARCD3;;chr6:15246200..15246214,+!p2@JARID2!0.96!22.80!JARID2;;chr19:36391434..36391450,-!p1@NFKBID!0.95!15.84!NFKBID;;chr4:185395633..185395651,-!p2@IRF2!0.95!12.92!IRF2;;chr16:3313791..3313834,+!p2@ZNF263!0.94!17.41!ZNF263;;chr16:31885093..31885165,+!p1@ZNF267!0.93!118.39!ZNF267;;chr2:238600933..238600985,+!p3@LRRFIP1!0.93!42.24!LRRFIP1;;chr8:71316428..71316459,-!p2@NCOA2!0.93!13.03!NCOA2;;chr10:31288398..31288455,-!p2@ZNF438!0.93!8.87!ZNF438;;chr11:47399920..47399931,-!p7@SPI1!0.93!7.53!SPI1;;chrX:106960285..106960299,-!p1@TSC22D3!0.92!203.99!TSC22D3;;chr2:208031542..208031595,-!p2@KLF7!0.92!53.47!KLF7;;chrX:129244454..129244488,-!p1@ELF4!0.91!53.92!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!0.91!46.05!NFKB2;;chr2:145271342..145271377,-!p5@ZEB2!0.91!7.08!ZEB2;;chr2:28615716..28615733,+!p1@FOSL2!0.90!347.99!FOSL2;;chr5:131826457..131826514,-!p1@IRF1!0.90!284.08!IRF1;;chr11:615942..615957,-!p1@IRF7!0.90!69.08!IRF7;;chr19:45252008..45252024,+!p2@BCL3!0.90!24.04!BCL3;;chr5:88179195..88179224,-!p3@MEF2C!0.90!11.23!MEF2C;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.96!ZFY;;chr20:48807351..48807384,+!p1@CEBPB!0.89!725.87!CEBPB;;chr17:38498402..38498445,+!p3@RARA!0.89!25.61!RARA;;chr10:35484053..35484076,+!p1@CREM!0.89!17.52!CREM;;chr2:231090433..231090469,+!p1@SP140!0.89!6.74!SP140;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.35!KLF3;;chr19:45250948..45250998,+!p3@BCL3!0.88!17.41!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!0.88!6.63!IKZF1;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.56!IFI16;;chr6:106534230..106534254,+!p2@PRDM1!0.87!16.62!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!0.87!7.98!IRF2;;chr10:135044190..135044229,+!p3@UTF1!0.87!6.40!UTF1;;chr14:75747250..75747267,+!p5@FOS!0.87!6.40!FOS;;chr2:8822176..8822196,+!p1@ID2!0.86!937.38!ID2;;chr1:8484007..8484061,-!p13@RERE!0.86!8.20!RERE;;chr19:13213954..13214021,-!p4@LYL1!0.86!6.29!LYL1;;chr12:11802753..11802834,+!p2@ETV6!0.85!31.45!ETV6;;chr20:48807615..48807644,+!p6@CEBPB!0.85!10.56!CEBPB;;chr4:106066730..106066754,+!p6@TET2!0.85!6.07!TET2;;chr21:30671235..30671253,+!p1@BACH1!0.84!79.87!BACH1;;chr9:110250629..110250642,-!p7@KLF4!0.84!5.84!KLF4;;chr12:54694738..54694749,-!p5@NFE2!0.84!5.84!NFE2;;chr2:70142189..70142223,+!p2@MXD1!0.83!43.70!MXD1;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.77!KLF4;;chr14:64971288..64971316,-!p2@ZBTB25!0.82!18.42!ZBTB25;;chr12:72056749..72056767,+!p6@THAP2!0.82!6.29!THAP2;;chr19:16435625..16435682,+!p1@KLF2!0.81!189.61!KLF2;;chr20:48807875..48807982,+!p2@CEBPB!0.81!129.51!CEBPB;;chr2:97202480..97202499,+!p1@ARID5A!0.81!59.76!ARID5A;;chr3:187463179..187463201,-!p2@BCL6!0.81!24.38!BCL6;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.73!HHEX;;chr14:35872453..35872485,-!p2@NFKBIA!0.81!14.27!NFKBIA;;chr2:145282041..145282092,-!p8@ZEB2!0.81!8.54!ZEB2;;chr19:13213704..13213726,-!p3@LYL1!0.81!7.41!LYL1;;chr14:75747296..75747329,+!p4@FOS!0.81!5.50!FOS;;chr2:238600998..238601013,+!p5@LRRFIP1!0.81!5.50!LRRFIP1;;chr21:40177892..40177903,+!p2@ETS2!0.80!23.03!ETS2;;chr2:60780607..60780624,-!p2@BCL11A!0.80!17.41!BCL11A;;chr1:158979851..158979865,+!p5@IFI16!0.80!12.47!IFI16;;chr19:45972701..45972774,+!p2@FOSB!0.80!7.41!FOSB;;chr19:50432132..50432217,+!p2@ATF5!0.80!6.52!ATF5;;chr10:3827371..3827386,-!p2@KLF6!0.79!46.84!KLF6;;chr2:208394817..208394834,+!p3@CREB1!0.79!22.24!CREB1;;chr9:94186085..94186096,-!p3@NFIL3!0.79!8.99!NFIL3;;chr13:41593405..41593416,-!p9@ELF1!0.79!5.17!ELF1;;chr3:187463248..187463264,-!p1@BCL6!0.78!117.05!BCL6;;chr9:117160738..117160782,-!p2@AKNA!0.78!22.69!AKNA;;chr3:39195139..39195150,-!p3@CSRNP1!0.78!6.63!CSRNP1;;chr6:15246741..15246765,+!p9@JARID2!0.78!5.05!JARID2;;chr14:75746781..75746799,+!p6@FOS!0.78!5.05!FOS;;chr6:12011943..12012015,+!p2@HIVEP1!0.77!17.19!HIVEP1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.77!8.42!PCBP2;;chr5:142782823..142782854,-!p3@NR3C1!0.77!7.30!NR3C1;;chr10:35416125..35416138,+!p10@CREM!0.77!5.84!CREM;;chr10:35416223..35416234,+!p12@CREM!0.77!4.94!CREM;;chr6:15246799..15246810,+!p18@JARID2!0.77!4.83!JARID2;;chr21:30672433..30672464,+!p6@BACH1!0.77!4.83!BACH1;;chr10:104155480..104155534,+!p2@NFKB2!0.76!33.70!NFKB2;;chrX:106960221..106960236,-!p3@TSC22D3!0.76!14.04!TSC22D3;;chr18:3448455..3448480,+!p5@TGIF1!0.76!9.21!TGIF1;;chr14:62162258..62162269,+!p2@HIF1A!0.75!48.75!HIF1A;;chr9:110251836..110251887,-!p4@KLF4!0.75!6.29!KLF4;;chr19:10416315..10416333,-!p1@ZGLP1!0.75!4.61!ZGLP1;;chr2:231084659..231084721,-!p1@SP110!0.74!117.61!SP110;;chr9:94186101..94186122,-!p1@NFIL3!0.74!70.32!NFIL3;;chr3:39195037..39195069,-!p2@CSRNP1!0.74!30.67!CSRNP1;;chr2:60780753..60780800,-!p1@BCL11A!0.74!24.15!BCL11A;;chr8:48650982..48651023,-!p3@CEBPD!0.74!12.02!CEBPD;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.21!NR4A3;;chr2:185463247..185463263,+!p1@ZNF804A!0.74!8.42!ZNF804A;;chr18:3448422..3448439,+!p11@TGIF1!0.74!6.96!TGIF1;;chr19:53039233..53039247,+!p2@ZNF808!0.74!6.96!ZNF808;;chr17:38497715..38497734,+!p8@RARA!0.74!4.49!RARA;;chr12:53774567..53774658,+!p2@SP1!0.73!23.59!SP1;;chr14:65569101..65569119,-!p3@MAX!0.73!15.16!MAX;;chr1:221052733..221052749,+!p2@HLX!0.73!5.84!HLX;;chr13:41593392..41593403,-!p7@ELF1!0.73!4.38!ELF1;;chr2:174828545..174828644,-!p1@SP3!0.72!73.24!SP3;;chr21:30671690..30671762,+!p2@BACH1!0.72!16.06!BACH1;;chr3:187463220..187463232,-!p3@BCL6!0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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor1.CNhs13224.11788-124B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11788-124B6 | |id=FF:11788-124B6 | ||
|is_a=EFO:0002091;;FF:0011111 | |is_a=EFO:0002091;;FF:0011111 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13224 | |||
|library_id_phase_based=2:CNhs13224 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11788 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11788 | |||
|name=CD14+CD16- Monocytes, donor1 | |name=CD14+CD16- Monocytes, donor1 | ||
|namespace= | |namespace= | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13224,LSID1005,release012,COMPLETED | |profile_hcage=CNhs13224,LSID1005,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 79: | ||
|rna_weight_ug=2.8996 | |rna_weight_ug=2.8996 | ||
|sample_age=25 | |sample_age=25 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 101: | ||
|top_motifs=NFIL3:2.68422444297;SPIB:2.59691480335;SPI1:2.40845387962;CEBPA,B_DDIT3:2.32829965322;MAFB:2.28829319847;ETS1,2:2.18447159891;ATF5_CREB3:2.10386308795;PAX2:1.89878970228;RUNX1..3:1.83716487262;HIF1A:1.81829940877;NANOG{mouse}:1.75327691879;IRF1,2:1.74709548767;CREB1:1.6981258258;EP300:1.63787046123;DMAP1_NCOR{1,2}_SMARC:1.60235027352;FOXP3:1.57172316205;ATF4:1.55638987294;ELF1,2,4:1.55307455706;HLF:1.52166279593;IRF7:1.41162444678;SREBF1,2:1.39131322561;TLX2:1.32681185693;FOXN1:1.32417151968;ESRRA:1.29481440354;RXRA_VDR{dimer}:1.18931666475;NFE2L2:1.14233459531;HMX1:1.13693649816;TGIF1:1.13122280404;RFX2..5_RFXANK_RFXAP:1.080748349;NFKB1_REL_RELA:1.04764338582;FOSL2:0.913935578784;NFE2L1:0.882295541778;FOXO1,3,4:0.78767927867;JUN:0.761842099058;BACH2:0.681536813199;HMGA1,2:0.658611109941;NR6A1:0.603508812108;FOX{D1,D2}:0.582456079691;ATF2:0.579109837398;FOS_FOS{B,L1}_JUN{B,D}:0.573697820278;NFE2:0.558120098217;TAL1_TCF{3,4,12}:0.525574056934;GLI1..3:0.498473368289;HOXA9_MEIS1:0.466946738478;ATF6:0.448219152641;NR1H4:0.447742389225;HBP1_HMGB_SSRP1_UBTF:0.386389402101;STAT2,4,6:0.383349148307;FOXA2:0.294318239989;FOX{F1,F2,J1}:0.273913127715;BPTF:0.239278448403;NANOG:0.222177491131;NKX2-2,8:0.216164883868;NFIX:0.175123235207;FOX{I1,J2}:0.169486151971;PPARG:0.157353498099;ALX4:0.14541704259;ESR1:0.132293446999;OCT4_SOX2{dimer}:0.12325319367;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.113433934139;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0744616646474;CDX1,2,4:0.0636716133559;AHR_ARNT_ARNT2:0.00142435926047;MYB:-0.0044661733794;TFCP2:-0.0244517345522;TFAP4:-0.0464945726988;MEF2{A,B,C,D}:-0.0864242687243;ALX1:-0.0952385267232;XBP1:-0.103161268918;GATA4:-0.107859678699;PAX3,7:-0.144420510973;EN1,2:-0.151329146308;HNF4A_NR2F1,2:-0.170794894906;FOXP1:-0.192825492502;T:-0.216654375295;PITX1..3:-0.217507736818;HES1:-0.227914950575;RORA:-0.259796147197;STAT5{A,B}:-0.263408138174;FOXD3:-0.276225250335;ZNF148:-0.283665767354;STAT1,3:-0.350321861861;RXR{A,B,G}:-0.377276911921;FOXQ1:-0.378092980105;PAX8:-0.39034970469;GATA6:-0.390793150541;SOX2:-0.401244272572;VSX1,2:-0.416314047984;ZBTB16:-0.427191398499;EBF1:-0.439921177687;SRF:-0.443399670714;NR5A1,2:-0.446138623514;IKZF2:-0.453533162025;PAX5:-0.483833551135;ELK1,4_GABP{A,B1}:-0.491240160483;TFAP2{A,C}:-0.521158220716;MYFfamily:-0.522529487727;TOPORS:-0.523192831695;POU5F1:-0.530660236062;AIRE:-0.564373813204;PAX4:-0.572367757001;CUX2:-0.581312423462;NHLH1,2:-0.618377187788;MTF1:-0.627841591222;MYOD1:-0.633505346395;REST:-0.638938572897;CRX:-0.657598833957;PRRX1,2:-0.657631363645;NKX3-1:-0.663650937671;POU2F1..3:-0.668410590995;HNF1A:-0.670480683935;SP1:-0.672882807124;BREu{core}:-0.673967833748;PRDM1:-0.710584045141;SPZ1:-0.732170916085;RREB1:-0.752897848615;MZF1:-0.776799303285;GCM1,2:-0.777150399776;ZNF238:-0.786721152572;POU1F1:-0.809608659128;PATZ1:-0.819788012047;ZNF423:-0.828182951176;HOX{A5,B5}:-0.839255072289;NR3C1:-0.845727564232;FOXL1:-0.848304175816;RFX1:-0.852240887459;ZEB1:-0.854999227415;SMAD1..7,9:-0.871425612947;SOX{8,9,10}:-0.897376645237;NKX3-2:-0.918163071312;PAX1,9:-0.979815078752;YY1:-0.998913575977;SOX5:-0.999247044643;ARID5B:-0.999385582516;PBX1:-1.00126849138;NFATC1..3:-1.02034584681;ZFP161:-1.02267419969;MTE{core}:-1.02864299889;GZF1:-1.03539363415;MED-1{core}:-1.08439702657;PDX1:-1.09402656392;DBP:-1.10503950226;EGR1..3:-1.10646886662;NKX2-1,4:-1.11139801461;HSF1,2:-1.11994054352;AR:-1.12431853626;HOX{A6,A7,B6,B7}:-1.13409885799;NKX2-3_NKX2-5:-1.14840814992;NKX6-1,2:-1.15047537127;E2F1..5:-1.16104792779;KLF4:-1.16518715101;IKZF1:-1.20706656028;ADNP_IRX_SIX_ZHX:-1.21623002309;PAX6:-1.22341687914;TBX4,5:-1.24654466633;MAZ:-1.24802163015;GTF2I:-1.25245597572;ZIC1..3:-1.25612007534;TFAP2B:-1.26072310852;TBP:-1.26759571282;NFY{A,B,C}:-1.26913836371;HIC1:-1.27292237354;SNAI1..3:-1.27743070654;TLX1..3_NFIC{dimer}:-1.27762515181;TEF:-1.28874741489;ZBTB6:-1.29121715341;LMO2:-1.35142614672;NRF1:-1.35501389868;TP53:-1.37696836384;GTF2A1,2:-1.37857870673;LHX3,4:-1.38122566016;HAND1,2:-1.38391270624;RBPJ:-1.418483387;LEF1_TCF7_TCF7L1,2:-1.52278926838;TEAD1:-1.55778316139;EVI1:-1.59070076093;FOXM1:-1.59646727252;HOX{A4,D4}:-1.6003669906;GFI1B:-1.60196468777;UFEwm:-1.60374238644;ZNF143:-1.61236578486;XCPE1{core}:-1.63525959975;TFDP1:-1.71918479149;bHLH_family:-1.77095767329;MYBL2:-1.82105293811;ZNF384:-1.86947743137;GFI1:-1.89185267225;ONECUT1,2:-1.95612335079;CDC5L:-1.99792382966;SOX17:-2.03672259215;POU6F1:-2.13502984114;POU3F1..4:-2.45735864161 | |top_motifs=NFIL3:2.68422444297;SPIB:2.59691480335;SPI1:2.40845387962;CEBPA,B_DDIT3:2.32829965322;MAFB:2.28829319847;ETS1,2:2.18447159891;ATF5_CREB3:2.10386308795;PAX2:1.89878970228;RUNX1..3:1.83716487262;HIF1A:1.81829940877;NANOG{mouse}:1.75327691879;IRF1,2:1.74709548767;CREB1:1.6981258258;EP300:1.63787046123;DMAP1_NCOR{1,2}_SMARC:1.60235027352;FOXP3:1.57172316205;ATF4:1.55638987294;ELF1,2,4:1.55307455706;HLF:1.52166279593;IRF7:1.41162444678;SREBF1,2:1.39131322561;TLX2:1.32681185693;FOXN1:1.32417151968;ESRRA:1.29481440354;RXRA_VDR{dimer}:1.18931666475;NFE2L2:1.14233459531;HMX1:1.13693649816;TGIF1:1.13122280404;RFX2..5_RFXANK_RFXAP:1.080748349;NFKB1_REL_RELA:1.04764338582;FOSL2:0.913935578784;NFE2L1:0.882295541778;FOXO1,3,4:0.78767927867;JUN:0.761842099058;BACH2:0.681536813199;HMGA1,2:0.658611109941;NR6A1:0.603508812108;FOX{D1,D2}:0.582456079691;ATF2:0.579109837398;FOS_FOS{B,L1}_JUN{B,D}:0.573697820278;NFE2:0.558120098217;TAL1_TCF{3,4,12}:0.525574056934;GLI1..3:0.498473368289;HOXA9_MEIS1:0.466946738478;ATF6:0.448219152641;NR1H4:0.447742389225;HBP1_HMGB_SSRP1_UBTF:0.386389402101;STAT2,4,6:0.383349148307;FOXA2:0.294318239989;FOX{F1,F2,J1}:0.273913127715;BPTF:0.239278448403;NANOG:0.222177491131;NKX2-2,8:0.216164883868;NFIX:0.175123235207;FOX{I1,J2}:0.169486151971;PPARG:0.157353498099;ALX4:0.14541704259;ESR1:0.132293446999;OCT4_SOX2{dimer}:0.12325319367;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.113433934139;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0744616646474;CDX1,2,4:0.0636716133559;AHR_ARNT_ARNT2:0.00142435926047;MYB:-0.0044661733794;TFCP2:-0.0244517345522;TFAP4:-0.0464945726988;MEF2{A,B,C,D}:-0.0864242687243;ALX1:-0.0952385267232;XBP1:-0.103161268918;GATA4:-0.107859678699;PAX3,7:-0.144420510973;EN1,2:-0.151329146308;HNF4A_NR2F1,2:-0.170794894906;FOXP1:-0.192825492502;T:-0.216654375295;PITX1..3:-0.217507736818;HES1:-0.227914950575;RORA:-0.259796147197;STAT5{A,B}:-0.263408138174;FOXD3:-0.276225250335;ZNF148:-0.283665767354;STAT1,3:-0.350321861861;RXR{A,B,G}:-0.377276911921;FOXQ1:-0.378092980105;PAX8:-0.39034970469;GATA6:-0.390793150541;SOX2:-0.401244272572;VSX1,2:-0.416314047984;ZBTB16:-0.427191398499;EBF1:-0.439921177687;SRF:-0.443399670714;NR5A1,2:-0.446138623514;IKZF2:-0.453533162025;PAX5:-0.483833551135;ELK1,4_GABP{A,B1}:-0.491240160483;TFAP2{A,C}:-0.521158220716;MYFfamily:-0.522529487727;TOPORS:-0.523192831695;POU5F1:-0.530660236062;AIRE:-0.564373813204;PAX4:-0.572367757001;CUX2:-0.581312423462;NHLH1,2:-0.618377187788;MTF1:-0.627841591222;MYOD1:-0.633505346395;REST:-0.638938572897;CRX:-0.657598833957;PRRX1,2:-0.657631363645;NKX3-1:-0.663650937671;POU2F1..3:-0.668410590995;HNF1A:-0.670480683935;SP1:-0.672882807124;BREu{core}:-0.673967833748;PRDM1:-0.710584045141;SPZ1:-0.732170916085;RREB1:-0.752897848615;MZF1:-0.776799303285;GCM1,2:-0.777150399776;ZNF238:-0.786721152572;POU1F1:-0.809608659128;PATZ1:-0.819788012047;ZNF423:-0.828182951176;HOX{A5,B5}:-0.839255072289;NR3C1:-0.845727564232;FOXL1:-0.848304175816;RFX1:-0.852240887459;ZEB1:-0.854999227415;SMAD1..7,9:-0.871425612947;SOX{8,9,10}:-0.897376645237;NKX3-2:-0.918163071312;PAX1,9:-0.979815078752;YY1:-0.998913575977;SOX5:-0.999247044643;ARID5B:-0.999385582516;PBX1:-1.00126849138;NFATC1..3:-1.02034584681;ZFP161:-1.02267419969;MTE{core}:-1.02864299889;GZF1:-1.03539363415;MED-1{core}:-1.08439702657;PDX1:-1.09402656392;DBP:-1.10503950226;EGR1..3:-1.10646886662;NKX2-1,4:-1.11139801461;HSF1,2:-1.11994054352;AR:-1.12431853626;HOX{A6,A7,B6,B7}:-1.13409885799;NKX2-3_NKX2-5:-1.14840814992;NKX6-1,2:-1.15047537127;E2F1..5:-1.16104792779;KLF4:-1.16518715101;IKZF1:-1.20706656028;ADNP_IRX_SIX_ZHX:-1.21623002309;PAX6:-1.22341687914;TBX4,5:-1.24654466633;MAZ:-1.24802163015;GTF2I:-1.25245597572;ZIC1..3:-1.25612007534;TFAP2B:-1.26072310852;TBP:-1.26759571282;NFY{A,B,C}:-1.26913836371;HIC1:-1.27292237354;SNAI1..3:-1.27743070654;TLX1..3_NFIC{dimer}:-1.27762515181;TEF:-1.28874741489;ZBTB6:-1.29121715341;LMO2:-1.35142614672;NRF1:-1.35501389868;TP53:-1.37696836384;GTF2A1,2:-1.37857870673;LHX3,4:-1.38122566016;HAND1,2:-1.38391270624;RBPJ:-1.418483387;LEF1_TCF7_TCF7L1,2:-1.52278926838;TEAD1:-1.55778316139;EVI1:-1.59070076093;FOXM1:-1.59646727252;HOX{A4,D4}:-1.6003669906;GFI1B:-1.60196468777;UFEwm:-1.60374238644;ZNF143:-1.61236578486;XCPE1{core}:-1.63525959975;TFDP1:-1.71918479149;bHLH_family:-1.77095767329;MYBL2:-1.82105293811;ZNF384:-1.86947743137;GFI1:-1.89185267225;ONECUT1,2:-1.95612335079;CDC5L:-1.99792382966;SOX17:-2.03672259215;POU6F1:-2.13502984114;POU3F1..4:-2.45735864161 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11788-124B6;search_select_hide=table117:FF:11788-124B6 | |||
}} | }} | ||
Latest revision as of 18:20, 4 June 2020
| Name: | CD14+CD16- Monocytes, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13224 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13224
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13224
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.132 |
| 10 | 10 | 0.0179 |
| 100 | 100 | 0.943 |
| 101 | 101 | 0.516 |
| 102 | 102 | 0.614 |
| 103 | 103 | 0.284 |
| 104 | 104 | 0.674 |
| 105 | 105 | 0.157 |
| 106 | 106 | 0.00744 |
| 107 | 107 | 0.616 |
| 108 | 108 | 0.737 |
| 109 | 109 | 0.0695 |
| 11 | 11 | 0.153 |
| 110 | 110 | 0.305 |
| 111 | 111 | 0.0382 |
| 112 | 112 | 0.3 |
| 113 | 113 | 0.654 |
| 114 | 114 | 0.0138 |
| 115 | 115 | 0.14 |
| 116 | 116 | 0.856 |
| 117 | 117 | 0.028 |
| 118 | 118 | 0.0917 |
| 119 | 119 | 0.411 |
| 12 | 12 | 0.347 |
| 120 | 120 | 0.737 |
| 121 | 121 | 0.975 |
| 122 | 122 | 0.694 |
| 123 | 123 | 0.0388 |
| 124 | 124 | 0.875 |
| 125 | 125 | 0.215 |
| 126 | 126 | 0.176 |
| 127 | 127 | 0.256 |
| 128 | 128 | 0.0578 |
| 129 | 129 | 0.99 |
| 13 | 13 | 0.108 |
| 130 | 130 | 0.238 |
| 131 | 131 | 0.631 |
| 132 | 132 | 0.0263 |
| 133 | 133 | 0.676 |
| 134 | 134 | 0.568 |
| 135 | 135 | 0.137 |
| 136 | 136 | 0.801 |
| 137 | 137 | 1.19291e-4 |
| 138 | 138 | 0.121 |
| 139 | 139 | 0.0296 |
| 14 | 14 | 0.346 |
| 140 | 140 | 0.156 |
| 141 | 141 | 0.322 |
| 142 | 142 | 0.782 |
| 143 | 143 | 0.0398 |
| 144 | 144 | 0.724 |
| 145 | 145 | 0.798 |
| 146 | 146 | 0.691 |
| 147 | 147 | 0.347 |
| 148 | 148 | 0.0227 |
| 149 | 149 | 0.596 |
| 15 | 15 | 0.123 |
| 150 | 150 | 0.699 |
| 151 | 151 | 0.284 |
| 152 | 152 | 0.209 |
| 153 | 153 | 0.772 |
| 154 | 154 | 0.721 |
| 155 | 155 | 0.258 |
| 156 | 156 | 0.861 |
| 157 | 157 | 0.574 |
| 158 | 158 | 0.0422 |
| 159 | 159 | 0.888 |
| 16 | 16 | 0.426 |
| 160 | 160 | 0.519 |
| 161 | 161 | 0.531 |
| 162 | 162 | 0.258 |
| 163 | 163 | 0.99 |
| 164 | 164 | 0.0859 |
| 165 | 165 | 0.108 |
| 166 | 166 | 0.623 |
| 167 | 167 | 0.2 |
| 168 | 168 | 0.533 |
| 169 | 169 | 0.00821 |
| 17 | 17 | 0.292 |
| 18 | 18 | 0.141 |
| 19 | 19 | 0.25 |
| 2 | 2 | 0.984 |
| 20 | 20 | 0.534 |
| 21 | 21 | 0.639 |
| 22 | 22 | 0.201 |
| 23 | 23 | 0.147 |
| 24 | 24 | 0.204 |
| 25 | 25 | 0.186 |
| 26 | 26 | 0.025 |
| 27 | 27 | 0.577 |
| 28 | 28 | 0.572 |
| 29 | 29 | 0.0662 |
| 3 | 3 | 0.114 |
| 30 | 30 | 0.497 |
| 31 | 31 | 0.711 |
| 32 | 32 | 0.663 |
| 33 | 33 | 0.178 |
| 34 | 34 | 0.494 |
| 35 | 35 | 0.19 |
| 36 | 36 | 0.0593 |
| 37 | 37 | 0.0643 |
| 38 | 38 | 0.465 |
| 39 | 39 | 0.883 |
| 4 | 4 | 0.9 |
| 40 | 40 | 0.078 |
| 41 | 41 | 0.019 |
| 42 | 42 | 0.38 |
| 43 | 43 | 0.0903 |
| 44 | 44 | 0.988 |
| 45 | 45 | 0.88 |
| 46 | 46 | 0.217 |
| 47 | 47 | 0.516 |
| 48 | 48 | 0.409 |
| 49 | 49 | 0.127 |
| 5 | 5 | 0.12 |
| 50 | 50 | 0.944 |
| 51 | 51 | 0.334 |
| 52 | 52 | 0.42 |
| 53 | 53 | 0.277 |
| 54 | 54 | 0.402 |
| 55 | 55 | 0.572 |
| 56 | 56 | 0.775 |
| 57 | 57 | 0.798 |
| 58 | 58 | 0.093 |
| 59 | 59 | 0.174 |
| 6 | 6 | 0.795 |
| 60 | 60 | 0.0607 |
| 61 | 61 | 0.232 |
| 62 | 62 | 0.04 |
| 63 | 63 | 0.577 |
| 64 | 64 | 0.334 |
| 65 | 65 | 0.248 |
| 66 | 66 | 0.127 |
| 67 | 67 | 0.638 |
| 68 | 68 | 0.821 |
| 69 | 69 | 0.821 |
| 7 | 7 | 0.164 |
| 70 | 70 | 0.0355 |
| 71 | 71 | 0.0196 |
| 72 | 72 | 0.23 |
| 73 | 73 | 0.104 |
| 74 | 74 | 0.0807 |
| 75 | 75 | 0.064 |
| 76 | 76 | 0.199 |
| 77 | 77 | 0.549 |
| 78 | 78 | 0.143 |
| 79 | 79 | 0.133 |
| 8 | 8 | 0.533 |
| 80 | 80 | 0.293 |
| 81 | 81 | 0.275 |
| 82 | 82 | 0.114 |
| 83 | 83 | 0.701 |
| 84 | 84 | 0.689 |
| 85 | 85 | 0.0255 |
| 86 | 86 | 0.0702 |
| 87 | 87 | 0.339 |
| 88 | 88 | 0.551 |
| 89 | 89 | 0.365 |
| 9 | 9 | 0.297 |
| 90 | 90 | 0.0561 |
| 91 | 91 | 0.364 |
| 92 | 92 | 0.329 |
| 93 | 93 | 0.331 |
| 94 | 94 | 0.0307 |
| 95 | 95 | 0.089 |
| 96 | 96 | 0.509 |
| 97 | 97 | 0.936 |
| 98 | 98 | 0.14 |
| 99 | 99 | 0.0158 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13224
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011111 human CD14-positive CD16-negative Monocytes sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011111 (human CD14-positive CD16-negative Monocytes sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)
