FF:11863-125A9: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - mock treated, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13468
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-4
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004949

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13468		CAGE		DRX008132		DRR009004

Accession ID Hg19

Library id		BAM		CTSS
CNhs13468		DRZ000429		DRZ001814

Accession ID Hg38

Library id		BAM		CTSS
CNhs13468		DRZ011779		DRZ013164

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.111
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0576
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.39
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.493
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.111
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.059
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.237
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.157
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.805
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.157
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.157
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.111
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.363
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.345
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.666
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.199
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.199
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.138
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.111
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.027
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.305
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.791
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.199
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.938
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.439
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.412
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.85
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.322
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.157
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.443
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.482
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.111
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.237
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.687
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.487
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.111
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.968
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.372
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0657
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.79
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.059
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.199
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.477
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.059
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.795
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.059
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.237
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.059
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.111
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.289
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13468

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.94898e-7
MA0003.1	MA0003.1	0.307
MA0004.1	MA0004.1	0.595
MA0006.1	MA0006.1	0.714
MA0007.1	MA0007.1	0.819
MA0009.1	MA0009.1	0.34
MA0014.1	MA0014.1	0.953
MA0017.1	MA0017.1	0.0301
MA0018.2	MA0018.2	0.861
MA0019.1	MA0019.1	0.524
MA0024.1	MA0024.1	9.63139e-4
MA0025.1	MA0025.1	0.0938
MA0027.1	MA0027.1	0.908
MA0028.1	MA0028.1	0.482
MA0029.1	MA0029.1	0.511
MA0030.1	MA0030.1	0.706
MA0031.1	MA0031.1	0.905
MA0035.2	MA0035.2	0.405
MA0038.1	MA0038.1	0.00753
MA0039.2	MA0039.2	0.891
MA0040.1	MA0040.1	0.52
MA0041.1	MA0041.1	0.267
MA0042.1	MA0042.1	0.844
MA0043.1	MA0043.1	0.0298
MA0046.1	MA0046.1	0.034
MA0047.2	MA0047.2	0.683
MA0048.1	MA0048.1	0.913
MA0050.1	MA0050.1	1.80443e-4
MA0051.1	MA0051.1	0.1
MA0052.1	MA0052.1	0.682
MA0055.1	MA0055.1	0.518
MA0057.1	MA0057.1	0.754
MA0058.1	MA0058.1	0.395
MA0059.1	MA0059.1	0.666
MA0060.1	MA0060.1	1.30206e-12
MA0061.1	MA0061.1	0.00233
MA0062.2	MA0062.2	0.0853
MA0065.2	MA0065.2	0.024
MA0066.1	MA0066.1	0.0706
MA0067.1	MA0067.1	0.0035
MA0068.1	MA0068.1	0.231
MA0069.1	MA0069.1	0.69
MA0070.1	MA0070.1	0.0304
MA0071.1	MA0071.1	0.251
MA0072.1	MA0072.1	0.584
MA0073.1	MA0073.1	0.4
MA0074.1	MA0074.1	0.189
MA0076.1	MA0076.1	0.447
MA0077.1	MA0077.1	0.13
MA0078.1	MA0078.1	0.427
MA0079.2	MA0079.2	0.724
MA0080.2	MA0080.2	3.32684e-16
MA0081.1	MA0081.1	2.94943e-4
MA0083.1	MA0083.1	0.477
MA0084.1	MA0084.1	0.733
MA0087.1	MA0087.1	0.662
MA0088.1	MA0088.1	0.845
MA0090.1	MA0090.1	0.094
MA0091.1	MA0091.1	0.411
MA0092.1	MA0092.1	0.268
MA0093.1	MA0093.1	0.632
MA0099.2	MA0099.2	1.30783e-31
MA0100.1	MA0100.1	0.603
MA0101.1	MA0101.1	0.0553
MA0102.2	MA0102.2	2.23278e-6
MA0103.1	MA0103.1	0.817
MA0104.2	MA0104.2	0.742
MA0105.1	MA0105.1	6.04377e-6
MA0106.1	MA0106.1	0.765
MA0107.1	MA0107.1	0.0196
MA0108.2	MA0108.2	9.19071e-5
MA0111.1	MA0111.1	0.279
MA0112.2	MA0112.2	5.25176e-5
MA0113.1	MA0113.1	0.959
MA0114.1	MA0114.1	0.226
MA0115.1	MA0115.1	0.737
MA0116.1	MA0116.1	1.58646e-4
MA0117.1	MA0117.1	0.375
MA0119.1	MA0119.1	0.391
MA0122.1	MA0122.1	0.979
MA0124.1	MA0124.1	0.49
MA0125.1	MA0125.1	0.403
MA0131.1	MA0131.1	0.527
MA0135.1	MA0135.1	0.974
MA0136.1	MA0136.1	1.16391e-17
MA0137.2	MA0137.2	0.731
MA0138.2	MA0138.2	0.998
MA0139.1	MA0139.1	0.864
MA0140.1	MA0140.1	0.287
MA0141.1	MA0141.1	0.0813
MA0142.1	MA0142.1	0.774
MA0143.1	MA0143.1	0.562
MA0144.1	MA0144.1	0.385
MA0145.1	MA0145.1	0.202
MA0146.1	MA0146.1	0.0458
MA0147.1	MA0147.1	0.711
MA0148.1	MA0148.1	0.947
MA0149.1	MA0149.1	0.223
MA0150.1	MA0150.1	9.44132e-12
MA0152.1	MA0152.1	0.331
MA0153.1	MA0153.1	0.00165
MA0154.1	MA0154.1	0.0033
MA0155.1	MA0155.1	0.634
MA0156.1	MA0156.1	2.02556e-9
MA0157.1	MA0157.1	0.557
MA0159.1	MA0159.1	0.0265
MA0160.1	MA0160.1	0.0451
MA0162.1	MA0162.1	0.718
MA0163.1	MA0163.1	1.06814e-6
MA0164.1	MA0164.1	0.751
MA0258.1	MA0258.1	0.00153
MA0259.1	MA0259.1	0.4

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13468

Novel motif	Logo	P-value
1	1	0.109
10	10	0.0192
100	100	0.753
101	101	0.6
102	102	0.47
103	103	0.24
104	104	0.679
105	105	0.392
106	106	0.00132
107	107	0.147
108	108	0.899
109	109	0.173
11	11	0.128
110	110	0.299
111	111	0.0273
112	112	0.22
113	113	0.57
114	114	0.0125
115	115	0.381
116	116	0.629
117	117	0.0283
118	118	0.184
119	119	0.132
12	12	0.429
120	120	0.888
121	121	0.703
122	122	0.814
123	123	0.0154
124	124	0.599
125	125	0.395
126	126	0.281
127	127	0.233
128	128	0.0194
129	129	0.518
13	13	0.2
130	130	0.123
131	131	0.666
132	132	0.144
133	133	0.992
134	134	0.521
135	135	0.337
136	136	0.996
137	137	0.0047
138	138	0.139
139	139	0.0248
14	14	0.383
140	140	0.0913
141	141	0.436
142	142	0.901
143	143	0.0339
144	144	0.772
145	145	0.353
146	146	0.47
147	147	0.327
148	148	0.018
149	149	0.499
15	15	0.13
150	150	0.468
151	151	0.284
152	152	0.0856
153	153	0.309
154	154	0.468
155	155	0.283
156	156	0.791
157	157	0.37
158	158	0.114
159	159	0.932
16	16	0.312
160	160	0.45
161	161	0.686
162	162	0.576
163	163	0.531
164	164	0.0991
165	165	0.139
166	166	0.472
167	167	0.214
168	168	0.562
169	169	0.0075
17	17	0.167
18	18	0.184
19	19	0.196
2	2	0.862
20	20	0.391
21	21	0.204
22	22	0.185
23	23	0.0768
24	24	0.27
25	25	0.38
26	26	0.0232
27	27	0.748
28	28	0.465
29	29	0.246
3	3	0.0463
30	30	0.568
31	31	0.67
32	32	0.761
33	33	0.483
34	34	0.345
35	35	0.141
36	36	0.196
37	37	0.0699
38	38	0.316
39	39	0.661
4	4	0.923
40	40	0.184
41	41	0.0238
42	42	0.351
43	43	0.0481
44	44	0.691
45	45	0.713
46	46	0.0978
47	47	0.389
48	48	0.334
49	49	0.101
5	5	0.203
50	50	0.926
51	51	0.312
52	52	0.317
53	53	0.223
54	54	0.255
55	55	0.291
56	56	0.599
57	57	0.68
58	58	0.101
59	59	0.114
6	6	0.515
60	60	0.0443
61	61	0.391
62	62	0.0369
63	63	0.38
64	64	0.414
65	65	0.209
66	66	0.239
67	67	0.59
68	68	0.892
69	69	0.734
7	7	0.309
70	70	0.0107
71	71	0.0298
72	72	0.252
73	73	0.0806
74	74	0.0922
75	75	0.0598
76	76	0.259
77	77	0.319
78	78	0.0906
79	79	0.0398
8	8	0.258
80	80	0.328
81	81	0.324
82	82	0.0751
83	83	0.483
84	84	0.532
85	85	0.0122
86	86	0.0516
87	87	0.436
88	88	0.449
89	89	0.311
9	9	0.347
90	90	0.0538
91	91	0.316
92	92	0.158
93	93	0.429
94	94	0.0288
95	95	0.256
96	96	0.327
97	97	0.975
98	98	0.149
99	99	0.185

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13468

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011101 human CD14-positive monocytes - mock treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004949
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008132;DRR009004;DRZ000429;DRZ001814;DRZ011779;DRZ013164
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0011101
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.75!560.80!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.59!391.85!ZNF385A;;chr2:68592406..68592424,+!p1@PLEK!2.40!248.34!PLEK;;chr7:115670804..115670825,-!p1@TFEC!2.24!172.01!TFEC;;chr1:25256756..25256774,-!p1@RUNX3!2.02!188.73!RUNX3;;chr11:47399947..47399961,-!p3@SPI1!1.99!96.40!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.98!93.93!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.94!86.51!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!1.93!84.19!OLIG1;;chr11:47399996..47400014,-!p4@SPI1!1.82!65.14!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.78!666.51!MAFB;;chr12:54778351..54778378,-!p6@ZNF385A!1.77!58.30!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!1.75!296.76!MXD1;;chr11:47400032..47400043,-!p5@SPI1!1.75!54.67!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.68!592.06!ZEB2;;chr6:106534192..106534224,+!p1@PRDM1!1.64!116.46!PRDM1;;chr7:128577972..128578047,+!p1@IRF5!1.63!65.28!IRF5;;chr19:50432132..50432217,+!p2@ATF5!1.62!48.56!ATF5;;chr19:33793430..33793447,-!p1@CEBPA!1.59!152.67!CEBPA;;chr7:50344289..50344323,+!p1@IKZF1!1.53!33.01!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.67!LYL1;;chr12:54694758..54694805,-!p1@NFE2!1.50!36.64!NFE2;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.66!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!1.46!32.57!ZNF438;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.46!28.06!ZBED1;;chr6:106534230..106534254,+!p2@PRDM1!1.43!63.83!PRDM1;;chr10:51572408..51572454,+!p3@NCOA4!1.42!142.64!NCOA4;;chr9:117150254..117150271,-!p1@AKNA!1.42!66.88!AKNA;;chr6:144385698..144385742,-!p2@PLAGL1!1.40!29.37!PLAGL1;;chr10:51572339..51572376,+!p4@NCOA4!1.39!52.20!NCOA4;;chr21:36260295..36260310,-!p3@RUNX1!1.37!35.48!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.36!135.22!ELF1;;chr10:31288370..31288393,-!p3@ZNF438!1.34!20.94!ZNF438;;chr2:145275162..145275202,-!p2@ZEB2!1.33!116.90!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.31!64.56!BACH1;;chrX:129244454..129244488,-!p1@ELF4!1.29!130.42!ELF4;;chr2:145277882..145277967,-!p3@ZEB2!1.29!31.41!ZEB2;;chr19:42636586..42636607,-!p1@POU2F2!1.27!47.84!POU2F2;;chr12:48298765..48298783,-!p2@VDR!1.26!35.48!VDR;;chrX:129244430..129244442,-!p5@ELF4!1.26!17.30!ELF4;;chr12:48298785..48298828,-!p1@VDR!1.24!84.62!VDR;;chr10:35484053..35484076,+!p1@CREM!1.24!40.57!CREM;;chr6:1312325..1312340,+!p1@FOXQ1!1.24!26.90!FOXQ1;;chr21:30672433..30672464,+!p6@BACH1!1.24!16.58!BACH1;;chr1:25256439..25256476,-!p3@RUNX3!1.24!16.43!RUNX3;;chr19:13213954..13214021,-!p4@LYL1!1.24!16.28!LYL1;;chr16:31885093..31885165,+!p1@ZNF267!1.23!237.44!ZNF267;;chr12:96588279..96588299,+!p4@ELK3!1.23!75.32!ELK3;;chr11:47399920..47399931,-!p7@SPI1!1.22!15.70!SPI1;;chr17:38497662..38497713,+!p4@RARA!1.21!17.45!RARA;;chr18:3449720..3449749,+!p2@TGIF1!1.20!31.26!TGIF1;;chr21:30671235..30671253,+!p1@BACH1!1.18!176.80!BACH1;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!137.69!NFKBIE;;chr21:36421535..36421610,-!p2@RUNX1!1.18!49.58!RUNX1;;chr21:34442540..34442560,+!p2@OLIG1!1.18!14.25!OLIG1;;chr19:45971246..45971265,+!p1@FOSB!1.17!252.41!FOSB;;chr5:88178983..88179012,-!p1@MEF2C!1.16!103.81!MEF2C;;chr12:96588219..96588263,+!p2@ELK3!1.16!95.82!ELK3;;chr2:28618532..28618610,+!p4@FOSL2!1.16!22.97!FOSL2;;chr7:50343634..50343717,+!p2@IKZF1!1.16!13.52!IKZF1;;chr4:106068026..106068084,+!p1@TET2!1.15!116.75!TET2;;chr10:94449703..94449718,+!p1@HHEX!1.15!50.45!HHEX;;chr1:156470515..156470542,-!p2@MEF2D!1.14!67.03!MEF2D;;chr12:11802753..11802834,+!p2@ETV6!1.14!63.10!ETV6;;chr2:238600933..238600985,+!p3@LRRFIP1!1.12!66.16!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.61!ZNF385A;;chr12:72056749..72056767,+!p6@THAP2!1.12!13.67!THAP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.11!317.26!TSC22D3;;chr7:149470641..149470694,-!p1@ZNF467!1.11!54.09!ZNF467;;chr6:15246200..15246214,+!p2@JARID2!1.11!33.01!JARID2;;chr6:391743..391759,+!p1@IRF4!1.10!11.49!IRF4;;chr21:34398234..34398250,+!p1@OLIG2!1.10!11.49!OLIG2;;chr20:48599506..48599526,+!p1@SNAI1!1.09!72.84!SNAI1;;chr14:35872453..35872485,-!p2@NFKBIA!1.09!28.21!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.08!22.83!PCBP1;;chr12:72056773..72056796,+!p3@THAP2!1.08!14.54!THAP2;;chr12:54785054..54785072,-!p4@ZNF385A!1.08!12.65!ZNF385A;;chr12:124873852..124873881,-!p3@NCOR2!1.07!65.72!NCOR2;;chr1:156470494..156470505,-!p3@MEF2D!1.07!15.56!MEF2D;;chr12:96588368..96588394,+!p3@ELK3!1.06!28.35!ELK3;;chr19:45250948..45250998,+!p3@BCL3!1.06!27.04!BCL3;;chr19:45251395..45251432,+!p8@BCL3!1.05!10.32!BCL3;;chr2:238600998..238601013,+!p5@LRRFIP1!1.05!10.18!LRRFIP1;;chr8:116681123..116681143,-!p4@TRPS1!1.04!19.63!TRPS1;;chr12:54694807..54694832,-!p3@NFE2!1.04!9.89!NFE2;;chr15:90544532..90544563,+!p1@ZNF710!1.03!19.48!ZNF710;;chr19:19496539..19496576,+!p8@GATAD2A!1.03!17.16!GATAD2A;;chr4:185395633..185395651,-!p2@IRF2!1.03!15.85!IRF2;;chr7:137620684..137620711,-!p4@CREB3L2!1.03!9.60!CREB3L2;;chr15:31619013..31619095,+!p1@KLF13!1.02!224.06!KLF13;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!89.71!ZCCHC6;;chr9:137217986..137218049,+!p3@RXRA!1.02!27.77!RXRA;;chr11:128563948..128564003,+!p1@FLI1!1.01!112.97!FLI1;;chr2:70167296..70167306,+!p3@MXD1!1.01!14.25!MXD1;;chr18:3449618..3449634,+!p13@TGIF1!1.01!11.63!TGIF1;;chr2:68592394..68592405,+!p2@PLEK!1.01!9.16!PLEK;;chr20:48807351..48807384,+!p1@CEBPB!1.00!945.23!CEBPB;;chr11:615942..615957,-!p1@IRF7!1.00!86.08!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.00!17.88!NFKBID;;chr12:72056800..72056834,+!p1@THAP2!0.99!12.07!THAP2;;chr7:115670792..115670797,-!p2@TFEC!0.99!8.87!TFEC;;chr13:41593405..41593416,-!p9@ELF1!0.99!8.72!ELF1;;chr2:185463247..185463263,+!p1@ZNF804A!0.98!15.41!ZNF804A;;chr5:88179195..88179224,-!p3@MEF2C!0.98!13.81!MEF2C;;chr1:158979872..158979898,+!p3@IFI16!0.96!25.44!IFI16;;chr8:116681150..116681164,-!p5@TRPS1!0.96!16.28!TRPS1;;chr17:38474489..38474548,+!p1@RARA!0.95!257.65!RARA;;chr7:17338266..17338282,+!p1@AHR!0.95!88.69!AHR;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.58!EGR2;;chr6:15246261..15246312,+!p1@JARID2!0.94!193.38!JARID2;;chrX:106960180..106960197,-!p2@TSC22D3!0.94!30.53!TSC22D3;;chr17:38498402..38498445,+!p3@RARA!0.94!28.93!RARA;;chr19:45252008..45252024,+!p2@BCL3!0.94!26.17!BCL3;;chr9:3525727..3525828,-!p2@RFX3!0.94!20.36!RFX3;;chr7:99156393..99156433,+!p6@ZNF655!0.94!17.74!ZNF655;;chr6:15246217..15246228,+!p3@JARID2!0.94!13.81!JARID2;;chr2:28615716..28615733,+!p1@FOSL2!0.93!369.89!FOSL2;;chr2:97202480..97202499,+!p1@ARID5A!0.93!78.95!ARID5A;;chr2:61108695..61108753,+!p1@REL!0.93!53.94!REL;;chr19:6110474..6110551,-!p1@RFX2!0.93!47.25!RFX2;;chr8:71316428..71316459,-!p2@NCOA2!0.93!12.94!NCOA2;;chr12:54694653..54694672,-!p2@NFE2!0.93!7.56!NFE2;;chr10:31288329..31288353,-!p7@ZNF438!0.93!7.42!ZNF438;;chr13:41593392..41593403,-!p7@ELF1!0.93!7.42!ELF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.42!CREB3L2;;chr2:145277589..145277612,-!p12@ZEB2!0.93!7.42!ZEB2;;chr3:170075436..170075520,+!p1@SKIL!0.92!164.45!SKIL;;chr17:40440481..40440550,+!p1@STAT5A!0.92!55.11!STAT5A;;chr2:70142189..70142223,+!p2@MXD1!0.92!54.38!MXD1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.92!22.10!ZBTB7A;;chr18:3448455..3448480,+!p5@TGIF1!0.92!13.81!TGIF1;;chr20:48807615..48807644,+!p6@CEBPB!0.92!12.36!CEBPB;;chr12:11802690..11802704,+!p4@ETV6!0.92!10.76!ETV6;;chr2:231090433..231090469,+!p1@SP140!0.92!7.27!SP140;;chr7:28725740..28725778,+!p1@CREB5!0.91!66.45!CREB5;;chr18:3449586..3449617,+!p8@TGIF1!0.91!11.63!TGIF1;;chr19:50432104..50432126,+!p6@ATF5!0.91!7.12!ATF5;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.18!NR3C1;;chr9:88969287..88969297,-!p3@ZCCHC6!0.90!9.45!ZCCHC6;;chr10:135044190..135044229,+!p3@UTF1!0.90!6.98!UTF1;;chr14:35873947..35873965,-!p1@NFKBIA!0.89!448.70!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!0.89!92.47!ZBTB43;;chr1:157108130..157108173,-!p1@ETV3!0.89!51.33!ETV3;;chr19:19496624..19496660,+!p3@GATAD2A!0.89!31.99!GATAD2A;;chr16:3313791..3313834,+!p2@ZNF263!0.89!15.41!ZNF263;;chr8:116681194..116681214,-!p1@TRPS1!0.88!64.85!TRPS1;;chr10:104154246..104154347,+!p3@NFKB2!0.88!42.60!NFKB2;;chr1:158979851..158979865,+!p5@IFI16!0.88!14.98!IFI16;;chr2:231280954..231280965,+!p2@SP100!0.87!12.07!SP100;;chr1:8484007..8484061,-!p13@RERE!0.87!8.43!RERE;;chr9:110250697..110250738,-!p2@KLF4!0.87!7.56!KLF4;;chr4:103422499..103422632,+!p1@NFKB1!0.86!137.26!NFKB1;;chr5:172483347..172483407,+!p1@C5orf41!0.85!49.29!CREBRF;;chr14:74226747..74226779,-!p3@C14orf43!0.85!36.06!C14orf43;;chr17:38498594..38498661,+!p2@RARA!0.85!21.66!RARA;;chr17:79881332..79881348,-!p3@MAFG!0.85!9.16!MAFG;;chr9:88969339..88969422,-!p2@ZCCHC6!0.84!48.71!ZCCHC6;;chr7:150974206..150974255,-!p1@SMARCD3!0.84!39.69!SMARCD3;;chr18:74207147..74207183,-!p1@ZNF516!0.84!18.61!ZNF516;;chr9:110252035..110252057,-!p1@KLF4!0.83!98.29!KLF4;;chr14:65569101..65569119,-!p3@MAX!0.83!19.34!MAX;;chr20:48807456..48807475,+!p3@CEBPB!0.83!11.49!CEBPB;;chr15:31619871..31619884,+!p8@KLF13!0.83!9.89!KLF13;;chr2:238600789..238600925,+!p1@LRRFIP1!0.82!119.81!LRRFIP1;;chr10:94449675..94449694,+!p2@HHEX!0.82!15.85!HHEX;;chr18:3449527..3449582,+!p6@TGIF1!0.82!11.05!TGIF1;;chr1:44679370..44679422,+!p3@DMAP1!0.82!7.56!DMAP1;;chr4:185395590..185395627,-!p3@IRF2!0.82!7.12!IRF2;;chrX:153305787..153305807,-!p3@MECP2!0.82!5.67!MECP2;;chr8:53373491..53373506,-!p4@ST18!0.82!5.67!ST18;;chr14:35872962..35873025,-!p3@NFKBIA!0.81!14.54!NFKBIA;;chr6:15246741..15246765,+!p9@JARID2!0.81!5.53!JARID2;;chr10:104155480..104155534,+!p2@NFKB2!0.80!37.66!NFKB2;;chr9:137218341..137218361,+!p2@RXRA!0.80!23.55!RXRA;;chr5:321810..321877,+!p1@AHRR!0.80!17.88!AHRR;;chr2:145275228..145275241,-!p11@ZEB2!0.80!6.54!ZEB2;;chr2:208394817..208394834,+!p3@CREB1!0.79!22.39!CREB1;;chr17:79885537..79885554,-!p2@MAFG!0.79!10.32!MAFG;;chr2:74730430..74730451,-!p1@LBX2!0.79!8.72!LBX2;;chr2:70166258..70166288,+!p5@MXD1!0.79!5.23!MXD1;;chr1:25291620..25291635,-!p4@RUNX3!0.79!5.23!RUNX3;;chr21:36260325..36260341,-!p14@RUNX1!0.79!5.23!RUNX1;;chr19:45251943..45252006,+!p1@BCL3!0.78!143.65!BCL3;;chr10:104155455..104155479,+!p1@NFKB2!0.78!79.97!NFKB2;;chr6:41703296..41703367,-!p1@TFEB!0.78!27.33!TFEB;;chr7:17338324..17338341,+!p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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=FF:0000343,FF:0011101,FF:11863-125A9
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor1.CNhs13468.11863-125A9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11863-125A9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011101
+|is_a=EFO:0002091;;FF:0011101
+|is_obsolete=
+|library_id=CNhs13468
+|library_id_phase_based=2:CNhs13468
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11863
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11863
 |name=CD14+ monocytes - mock treated, donor1
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13468,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 57: / Line 79: @@
 |rna_weight_ug=4.48095
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 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=EP300:2.50671416967;SREBF1,2:2.48136491327;SPI1:2.45408784517;SPIB:2.39664108299;NFE2L2:2.15982073987;FOXD3:2.12517530572;ETS1,2:1.97546976068;NFE2:1.90005914148;DMAP1_NCOR{1,2}_SMARC:1.85449667384;NANOG{mouse}:1.84256636276;PAX2:1.83243528624;HMX1:1.79773256069;CEBPA,B_DDIT3:1.752360965;NR1H4:1.72607833713;ELF1,2,4:1.62461788426;BACH2:1.60772296528;FOS_FOS{B,L1}_JUN{B,D}:1.53408845124;FOXP3:1.53212543748;FOSL2:1.5271933535;FOXN1:1.48698777495;HLF:1.37501689349;RUNX1..3:1.33863382713;NFIL3:1.3210882402;NFE2L1:1.2207289177;IRF1,2:1.17005489482;TLX2:1.16652772664;PITX1..3:1.04277766025;TFCP2:1.03908707452;RXRA_VDR{dimer}:1.01887283764;FOXO1,3,4:1.00901867322;SPZ1:1.00254630869;ATF5_CREB3:0.92160070006;SMAD1..7,9:0.869370599322;BPTF:0.854203444392;ESR1:0.789000425095;IRF7:0.751792625137;PDX1:0.736487361994;TGIF1:0.732231207184;FOX{F1,F2,J1}:0.730020355782;NFKB1_REL_RELA:0.702265295767;HBP1_HMGB_SSRP1_UBTF:0.680888539964;GLI1..3:0.673262561298;HES1:0.664360043875;GATA4:0.658961349267;PPARG:0.607249418755;ATF4:0.581445019921;PAX4:0.574414416791;ZBTB16:0.529009196316;FOX{D1,D2}:0.525052012378;IKZF2:0.508087969584;MAFB:0.505611812448;NR6A1:0.503322810216;FOXP1:0.501427436493;HIF1A:0.474140723651;CREB1:0.469041615439;TOPORS:0.46507152616;HMGA1,2:0.424455162774;RFX2..5_RFXANK_RFXAP:0.375123802257;ESRRA:0.346217350821;NFIX:0.338359134275;PAX1,9:0.233405238109;ALX1:0.22010325853;CDX1,2,4:0.190836532095;RREB1:0.139470891133;RXR{A,B,G}:0.13639231174;EN1,2:0.0994595022178;PRDM1:0.0661536164981;ZNF148:0.0641415000808;STAT2,4,6:0.0515643009562;ATF6:0.0489905873825;NANOG:0.0286087440658;AIRE:0.0214251954338;ATF2:-0.00171099612849;NKX2-2,8:-0.00379778786962;NKX3-2:-0.0176729042971;MYB:-0.0357995342876;ALX4:-0.0403155623475;JUN:-0.0445440988617;NKX6-1,2:-0.100796162989;TFAP4:-0.113178793488;OCT4_SOX2{dimer}:-0.116088363421;AHR_ARNT_ARNT2:-0.163319660205;NKX3-1:-0.184585761157;ZBTB6:-0.18699062322;PATZ1:-0.203824384073;MYFfamily:-0.204590809917;MZF1:-0.268590065263;HNF4A_NR2F1,2:-0.277670601196;POU5F1:-0.279125169337;CUX2:-0.302033332196;TAL1_TCF{3,4,12}:-0.338607714229;DBP:-0.34895387442;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.380551727709;EBF1:-0.391259532569;REST:-0.426587422532;TFAP2{A,C}:-0.435934544498;FOXM1:-0.447070022857;XBP1:-0.460313066405;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.461798068301;HOX{A5,B5}:-0.471417489844;ZIC1..3:-0.518870960142;ZNF238:-0.530808412706;NHLH1,2:-0.573412899167;STAT5{A,B}:-0.583040706753;TBP:-0.585001228572;ARID5B:-0.586526650406;SRF:-0.587145064204;EVI1:-0.603417412746;EGR1..3:-0.606262131087;GATA6:-0.612403680497;MED-1{core}:-0.637000393906;PAX3,7:-0.645722885261;HNF1A:-0.656143812938;STAT1,3:-0.668301970366;UFEwm:-0.67924601845;FOXA2:-0.728816408003;POU1F1:-0.750540592072;GCM1,2:-0.756566132213;ELK1,4_GABP{A,B1}:-0.771660877694;VSX1,2:-0.777856409002;PRRX1,2:-0.794743523771;KLF4:-0.816724885313;LMO2:-0.824915033012;GTF2A1,2:-0.826204975086;MTE{core}:-0.841716724341;T:-0.844104848363;MYOD1:-0.862604106484;ZNF423:-0.863847922358;CRX:-0.864925181974;IKZF1:-0.867391844615;NFATC1..3:-0.872452656603;MEF2{A,B,C,D}:-0.880377155226;ZFP161:-0.891716875583;SP1:-0.907800360631;TFAP2B:-0.912428106271;MTF1:-0.912879886002;HSF1,2:-0.930354776638;SOX5:-0.944300634524;SOX2:-0.953046194836;GZF1:-0.990392576645;PAX5:-1.00789140823;TBX4,5:-1.01871765099;NR3C1:-1.04817303855;PAX8:-1.06085025586;TLX1..3_NFIC{dimer}:-1.06140296436;TEF:-1.06179344186;GTF2I:-1.06458782403;RFX1:-1.06896926693;POU2F1..3:-1.0707440064;TP53:-1.08033914846;POU6F1:-1.08589939456;ZEB1:-1.13558003705;YY1:-1.1414846294;FOX{I1,J2}:-1.14283508211;TFDP1:-1.15503682936;MAZ:-1.15894183218;AR:-1.17281798646;NKX2-3_NKX2-5:-1.23324737798;XCPE1{core}:-1.27570851581;ONECUT1,2:-1.28852761836;BREu{core}:-1.29051103388;HIC1:-1.30425985679;PAX6:-1.30675915096;MYBL2:-1.34317781;SNAI1..3:-1.34705273082;SOX{8,9,10}:-1.397117656;TEAD1:-1.40185947604;NR5A1,2:-1.43077440916;FOXL1:-1.43104143452;E2F1..5:-1.46577502912;ZNF384:-1.47753679867;HOX{A4,D4}:-1.50238312004;RBPJ:-1.50839407571;HAND1,2:-1.51383219132;RORA:-1.52908611207;HOX{A6,A7,B6,B7}:-1.53411854826;FOXQ1:-1.55919586904;HOXA9_MEIS1:-1.64357206776;NKX2-1,4:-1.64582094208;ADNP_IRX_SIX_ZHX:-1.76593990054;NRF1:-1.87786743805;LHX3,4:-1.90864095493;SOX17:-2.01079797026;GFI1B:-2.0438560617;ZNF143:-2.05401752178;NFY{A,B,C}:-2.11162579251;POU3F1..4:-2.1821588068;CDC5L:-2.21847190901;PBX1:-2.22285018429;bHLH_family:-2.23600220868;GFI1:-2.3163434069;LEF1_TCF7_TCF7L1,2:-2.38551759807
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11863-125A9;search_select_hide=table117:FF:11863-125A9
 }}

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FF:11863-125A9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0