FF:11864-125B1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005955 | ||
|accession_numbers=CAGE;DRX008147;DRR009019;DRZ000444;DRZ001829 | |accession_numbers=CAGE;DRX008147;DRR009019;DRZ000444;DRZ001829;DRZ011794;DRZ013179 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.42!2604.47!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.85!700.63!SPI1;;chr12:72056800..72056834,+!p1@THAP2!2.57!489.43!THAP2;;chr7:115670804..115670825,-!p1@TFEC!2.56!366.08!TFEC;;chr2:70142232..70142251,+!p1@MXD1!2.53!1802.22!MXD1;;chr12:54778471..54778528,-!p1@ZNF385A!2.46!284.35!ZNF385A;;chr3:101546827..101546847,+!p2@NFKBIZ!2.35!311.29!NFKBIZ;;chr14:35872453..35872485,-!p2@NFKBIA!2.33!506.87!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!2.31!357.20!NR4A3;;chr9:102584262..102584276,+!p1@NR4A3!2.29!414.44!NR4A3;;chr10:35484053..35484076,+!p1@CREM!2.27!444.13!CREM;;chr11:47400062..47400077,-!p2@SPI1!2.18!149.68!SPI1;;chr11:47399947..47399961,-!p3@SPI1!2.17!148.14!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.17!148.14!IRF8;;chr14:35873947..35873965,-!p1@NFKBIA!2.14!7966.75!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!2.14!6627.02!NFKBIZ;;chr20:39317868..39317884,-!p1@MAFB!2.13!1497.67!MAFB;;chr19:45971246..45971265,+!p1@FOSB!2.09!2107.39!FOSB;;chr12:72056749..72056767,+!p6@THAP2!2.01!110.80!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!1.98!469.84!NR4A2;;chr12:72056773..72056796,+!p3@THAP2!1.97!119.68!THAP2;;chr10:64018918..64018936,+!p2@ZNF365!1.96!89.38!ZNF365;;chr10:64576105..64576133,-!p1@EGR2!1.95!174.47!EGR2;;chr12:52445218..52445237,+!p1@NR4A1!1.93!988.65!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.91!1581.84!NFKB1;;chr11:47399996..47400014,-!p4@SPI1!1.90!78.66!SPI1;;chr9:102584128..102584144,+!p3@NR4A3!1.88!140.19!NR4A3;;chr19:36391434..36391450,-!p1@NFKBID!1.87!138.96!NFKBID;;chr2:192015701..192015743,-!p1@STAT4!1.87!99.17!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.86!71.32!SPI1;;chr2:70167296..70167306,+!p3@MXD1!1.85!104.68!MXD1;;chr4:83822199..83822239,+!p2@THAP9!1.85!82.34!THAP9;;chr8:22550982..22550999,-!p1@EGR3!1.84!184.87!EGR3;;chr9:102584241..102584261,+!p4@NR4A3!1.81!96.42!NR4A3;;chr16:31885093..31885165,+!p1@ZNF267!1.80!883.66!ZNF267;;chr19:50432132..50432217,+!p2@ATF5!1.79!71.93!ATF5;;chrX:153305787..153305807,-!p3@MECP2!1.79!60.91!MECP2;;chr10:104155480..104155534,+!p2@NFKB2!1.77!354.45!NFKB2;;chr2:145275162..145275202,-!p2@ZEB2!1.76!319.86!ZEB2;;chr1:25256756..25256774,-!p1@RUNX3!1.76!103.76!RUNX3;;chr10:51572408..51572454,+!p3@NCOA4!1.75!309.45!NCOA4;;chr6:106534192..106534224,+!p1@PRDM1!1.74!146.92!PRDM1;;chr14:35872494..35872511,-!p5@NFKBIA!1.74!70.09!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.73!665.43!ZEB2;;chr10:31288398..31288455,-!p2@ZNF438!1.72!60.30!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.72!51.12!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.71!1283.72!ATF3;;chr22:38597987..38598021,+!p2@MAFF!1.71!289.86!MAFF;;chr1:37940170..37940190,+!p1@ZC3H12A!1.70!565.95!ZC3H12A;;chr11:615942..615957,-!p1@IRF7!1.70!443.82!IRF7;;chr6:126240442..126240459,+!p4@NCOA7!1.70!62.44!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!1.69!119.07!NCOA7;;chr14:35872926..35872951,-!p4@NFKBIA!1.69!67.34!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.68!303.94!REL;;chr8:123793988..123794016,+!p1@ZHX2!1.68!81.42!ZHX2;;chr10:104155659..104155676,+!p4@NFKB2!1.68!58.16!NFKB2;;chr21:34442439..34442455,+!p1@OLIG1!1.67!45.91!OLIG1;;chr10:51572339..51572376,+!p4@NCOA4!1.65!95.19!NCOA4;;chr2:70165961..70165981,+!p8@MXD1!1.65!43.77!MXD1;;chr12:54778351..54778378,-!p6@ZNF385A!1.64!42.85!ZNF385A;;chr14:35872414..35872425,-!p7@NFKBIA!1.63!46.52!NFKBIA;;chr10:31288370..31288393,-!p3@ZNF438!1.63!41.93!ZNF438;;chr10:35484090..35484104,+!p6@CREM!1.63!41.32!CREM;;chr20:48599506..48599526,+!p1@SNAI1!1.62!252.21!SNAI1;;chr7:106809470..106809481,+!p2@HBP1!1.62!56.63!HBP1;;chr3:39195037..39195069,-!p2@CSRNP1!1.61!238.44!CSRNP1;;chr14:35872542..35872553,-!p10@NFKBIA!1.61!39.48!NFKBIA;;chr10:104154246..104154347,+!p3@NFKB2!1.60!227.73!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.60!95.80!NFKBIA;;chr4:106066712..106066728,+!p8@TET2!1.60!38.87!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.91!PLAGL1;;chr9:102584278..102584285,+!p5@NR4A3!1.58!37.34!NR4A3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.04!ZBED1;;chr21:36260295..36260310,-!p3@RUNX1!1.57!57.54!RUNX1;;chr6:126240463..126240489,+!p6@NCOA7!1.57!40.10!NCOA7;;chr4:106066776..106066791,+!p9@TET2!1.57!35.81!TET2;;chr6:12012170..12012245,+!p1@HIVEP1!1.56!169.57!HIVEP1;;chr2:145271342..145271377,-!p5@ZEB2!1.56!35.51!ZEB2;;chrX:129244454..129244488,-!p1@ELF4!1.55!237.22!ELF4;;chr2:97202480..97202499,+!p1@ARID5A!1.54!322.61!ARID5A;;chr9:129567282..129567353,+!p1@ZBTB43!1.52!402.50!ZBTB43;;chr6:44233252..44233296,-!p1@NFKBIE!1.52!303.02!NFKBIE;;chr18:3449330..3449344,+!p10@TGIF1!1.52!41.93!TGIF1;;chr19:54058073..54058088,+!p1@ZNF331!1.52!31.83!ZNF331;;chr19:45252008..45252024,+!p2@BCL3!1.50!97.33!BCL3;;chr2:70314240..70314256,+!p4@PCBP1!1.50!61.83!PCBP1;;chr2:70166156..70166179,+!p4@MXD1!1.50!30.30!MXD1;;chr13:41593425..41593480,-!p1@ELF1!1.49!184.26!ELF1;;chr5:137804484..137804498,+!p2@EGR1!1.49!115.70!EGR1;;chr19:47616992..47617011,-!p4@ZC3H4!1.49!62.14!ZC3H4;;chr11:47399920..47399931,-!p7@SPI1!1.49!30.00!SPI1;;chr3:150126101..150126118,+!p6@TSC22D2!1.48!46.52!TSC22D2;;chr21:40177845..40177863,+!p1@ETS2!1.47!1590.11!ETS2;;chr4:106068026..106068084,+!p1@TET2!1.47!245.79!TET2;;chrX:153305962..153305995,-!p5@MECP2!1.47!28.77!MECP2;;chr1:38325227..38325246,-!p2@MTF1!1.46!37.95!MTF1;;chr4:103423079..103423112,+!p4@NFKB1!1.46!28.16!NFKB1;;chr11:47400045..47400060,-!p6@SPI1!1.46!28.16!SPI1;;chr2:191885737..191885750,-!p4@STAT1!1.46!27.85!STAT1;;chr6:15246200..15246214,+!p2@JARID2!1.45!74.07!JARID2;;chr21:30673091..30673135,+!p7@BACH1!1.45!27.24!BACH1;;chr10:35416142..35416169,+!p3@CREM!1.44!68.56!CREM;;chr11:65430554..65430579,-!p3@RELA!1.44!65.81!RELA;;chr1:221052776..221052799,+!p1@HLX!1.44!47.44!HLX;;chr4:106066730..106066754,+!p6@TET2!1.44!26.63!TET2;;chr2:231090471..231090504,+!p2@SP140!1.44!26.32!SP140;;chr2:70166258..70166288,+!p5@MXD1!1.44!26.32!MXD1;;chr7:50344289..50344323,+!p1@IKZF1!1.44!26.32!IKZF1;;chr6:12011943..12012015,+!p2@HIVEP1!1.43!80.81!HIVEP1;;chr6:391743..391759,+!p1@IRF4!1.43!25.71!IRF4;;chr2:68615063..68615089,+!p4@PLEK!1.42!25.40!PLEK;;chr10:3827371..3827386,-!p2@KLF6!1.41!199.26!KLF6;;chr2:70166988..70167021,+!p7@MXD1!1.41!24.79!MXD1;;chr21:30671690..30671762,+!p2@BACH1!1.40!79.28!BACH1;;chr2:28618532..28618610,+!p4@FOSL2!1.40!40.40!FOSL2;;chr3:101575889..101575903,+!p3@NFKBIZ!1.39!23.57!NFKBIZ;;chr4:83822246..83822277,+!p5@THAP9!1.39!23.57!THAP9;;chr6:106534230..106534254,+!p2@PRDM1!1.38!56.32!PRDM1;;chr18:3448455..3448480,+!p5@TGIF1!1.38!41.63!TGIF1;;chr2:231090433..231090469,+!p1@SP140!1.38!23.26!SP140;;chr21:30671235..30671253,+!p1@BACH1!1.37!275.78!BACH1;;chr18:77155922..77155939,+!p1@NFATC1!1.37!60.91!NFATC1;;chr18:3449720..3449749,+!p2@TGIF1!1.37!46.52!TGIF1;;chr2:145277882..145277967,-!p3@ZEB2!1.37!37.95!ZEB2;;chr9:94173455..94173468,-!p4@NFIL3!1.37!22.34!NFIL3;;chr10:104155455..104155479,+!p1@NFKB2!1.36!308.53!NFKB2;;chr12:48298765..48298783,-!p2@VDR!1.36!45.30!VDR;;chr4:83821967..83821998,+!p3@THAP9!1.35!26.32!THAP9;;chr2:73520667..73520683,-!p1@EGR4!1.35!21.43!EGR4;;chr21:30672433..30672464,+!p6@BACH1!1.35!21.43!BACH1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.70!ETV6;;chr21:40177892..40177903,+!p2@ETS2!1.34!81.11!ETS2;;chr10:35484804..35484902,+!p2@CREM!1.34!77.44!CREM;;chr12:96588368..96588394,+!p3@ELK3!1.34!54.79!ELK3;;chr6:12012249..12012266,+!p5@HIVEP1!1.34!36.12!HIVEP1;;chr2:231084639..231084654,-!p2@SP110!1.34!34.59!SP110;;chr12:72056897..72056908,+!p12@THAP2!1.34!21.12!THAP2;;chr2:28615716..28615733,+!p1@FOSL2!1.33!928.35!FOSL2;;chr2:70142189..70142223,+!p2@MXD1!1.32!139.57!MXD1;;chr2:192015677..192015691,-!p3@STAT4!1.32!19.90!STAT4;;chr12:72056706..72056717,+!p10@THAP2!1.32!19.90!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.31!22.34!RARA;;chr4:83822294..83822306,+!p8@THAP9!1.31!19.28!THAP9;;chr3:170075436..170075520,+!p1@SKIL!1.30!399.75!SKIL;;chr7:128577972..128578047,+!p1@IRF5!1.30!29.38!IRF5;;chr19:54041669..54041697,+!p2@ZNF331!1.30!18.98!ZNF331;;chr7:115670792..115670797,-!p2@TFEC!1.29!18.67!TFEC;;chrX:129244430..129244442,-!p5@ELF4!1.29!18.67!ELF4;;chrX:153305741..153305753,-!p4@MECP2!1.29!18.37!MECP2;;chr14:75745523..75745537,+!p1@FOS!1.28!2090.55!FOS;;chr11:615570..615721,-!p2@IRF7!1.28!35.20!IRF7;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.06!LRRFIP1;;chr18:3449618..3449634,+!p13@TGIF1!1.26!21.12!TGIF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.25!88.46!LRRFIP1;;chr19:45250948..45250998,+!p3@BCL3!1.25!41.63!BCL3;;chr18:3449586..3449617,+!p8@TGIF1!1.25!26.63!TGIF1;;chr3:39195139..39195150,-!p3@CSRNP1!1.25!21.43!CSRNP1;;chr12:96588219..96588263,+!p2@ELK3!1.24!115.70!ELK3;;chr4:81104895..81104920,+!p2@PRDM8!1.24!24.49!PRDM8;;chr3:39195075..39195088,-!p1@CSRNP1!1.23!98.56!CSRNP1;;chr5:142782823..142782854,-!p3@NR3C1!1.23!22.96!NR3C1;;chr9:110252035..110252057,-!p1@KLF4!1.22!242.11!KLF4;;chr7:17338266..17338282,+!p1@AHR!1.22!165.29!AHR;;chr2:157199008..157199023,-!p3@NR4A2!1.22!32.44!NR4A2;;chr10:3827389..3827408,-!p1@KLF6!1.21!1148.12!KLF6;;chr1:158979872..158979898,+!p3@IFI16!1.21!46.22!IFI16;;chr9:3525727..3525828,-!p2@RFX3!1.21!38.26!RFX3;;chr19:19496539..19496576,+!p8@GATAD2A!1.21!26.63!GATAD2A;;chr2:61108808..61108821,+!p3@REL!1.21!19.28!REL;;chr20:48807351..48807384,+!p1@CEBPB!1.20!1481.14!CEBPB;;chr1:157108130..157108173,-!p1@ETV3!1.20!105.29!ETV3;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.69!CREB1;;chr1:161736038..161736056,+!p4@ATF6!1.20!34.59!ATF6;;chr8:116681123..116681143,-!p4@TRPS1!1.20!28.77!TRPS1;;chr18:3449527..3449582,+!p6@TGIF1!1.20!28.47!TGIF1;;chr17:40440225..40440268,+!p3@STAT5A!1.20!18.98!STAT5A;;chr11:65430535..65430549,-!p4@RELA!1.20!17.45!RELA;;chr17:38497715..38497734,+!p8@RARA!1.20!15.00!RARA;;chr8:53373491..53373506,-!p4@ST18!1.20!15.00!ST18;;chr12:72056684..72056693,+!p13@THAP2!1.20!14.69!THAP2;;chr2:70166499..70166536,+!p6@MXD1!1.20!14.69!MXD1;;chr19:12902289..12902307,+!p1@JUNB!1.19!3252.14!JUNB;;chr9:117150254..117150271,-!p1@AKNA!1.19!39.79!AKNA;;chr8:72755203..72755239,-!p10@MSC!1.18!14.08!MSC;;chr2:145277589..145277612,-!p12@Z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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.42!2604.47!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.85!700.63!SPI1;;chr12:72056800..72056834,+!p1@THAP2!2.57!489.43!THAP2;;chr7:115670804..115670825,-!p1@TFEC!2.56!366.08!TFEC;;chr2:70142232..70142251,+!p1@MXD1!2.53!1802.22!MXD1;;chr12:54778471..54778528,-!p1@ZNF385A!2.46!284.35!ZNF385A;;chr3:101546827..101546847,+!p2@NFKBIZ!2.35!311.29!NFKBIZ;;chr14:35872453..35872485,-!p2@NFKBIA!2.33!506.87!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!2.31!357.20!NR4A3;;chr9:102584262..102584276,+!p1@NR4A3!2.29!414.44!NR4A3;;chr10:35484053..35484076,+!p1@CREM!2.27!444.13!CREM;;chr11:47400062..47400077,-!p2@SPI1!2.18!149.68!SPI1;;chr11:47399947..47399961,-!p3@SPI1!2.17!148.14!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.17!148.14!IRF8;;chr14:35873947..35873965,-!p1@NFKBIA!2.14!7966.75!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!2.14!6627.02!NFKBIZ;;chr20:39317868..39317884,-!p1@MAFB!2.13!1497.67!MAFB;;chr19:45971246..45971265,+!p1@FOSB!2.09!2107.39!FOSB;;chr12:72056749..72056767,+!p6@THAP2!2.01!110.80!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!1.98!469.84!NR4A2;;chr12:72056773..72056796,+!p3@THAP2!1.97!119.68!THAP2;;chr10:64018918..64018936,+!p2@ZNF365!1.96!89.38!ZNF365;;chr10:64576105..64576133,-!p1@EGR2!1.95!174.47!EGR2;;chr12:52445218..52445237,+!p1@NR4A1!1.93!988.65!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.91!1581.84!NFKB1;;chr11:47399996..47400014,-!p4@SPI1!1.90!78.66!SPI1;;chr9:102584128..102584144,+!p3@NR4A3!1.88!140.19!NR4A3;;chr19:36391434..36391450,-!p1@NFKBID!1.87!138.96!NFKBID;;chr2:192015701..192015743,-!p1@STAT4!1.87!99.17!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.86!71.32!SPI1;;chr2:70167296..70167306,+!p3@MXD1!1.85!104.68!MXD1;;chr4:83822199..83822239,+!p2@THAP9!1.85!82.34!THAP9;;chr8:22550982..22550999,-!p1@EGR3!1.84!184.87!EGR3;;chr9:102584241..102584261,+!p4@NR4A3!1.81!96.42!NR4A3;;chr16:31885093..31885165,+!p1@ZNF267!1.80!883.66!ZNF267;;chr19:50432132..50432217,+!p2@ATF5!1.79!71.93!ATF5;;chrX:153305787..153305807,-!p3@MECP2!1.79!60.91!MECP2;;chr10:104155480..104155534,+!p2@NFKB2!1.77!354.45!NFKB2;;chr2:145275162..145275202,-!p2@ZEB2!1.76!319.86!ZEB2;;chr1:25256756..25256774,-!p1@RUNX3!1.76!103.76!RUNX3;;chr10:51572408..51572454,+!p3@NCOA4!1.75!309.45!NCOA4;;chr6:106534192..106534224,+!p1@PRDM1!1.74!146.92!PRDM1;;chr14:35872494..35872511,-!p5@NFKBIA!1.74!70.09!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.73!665.43!ZEB2;;chr10:31288398..31288455,-!p2@ZNF438!1.72!60.30!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.72!51.12!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.71!1283.72!ATF3;;chr22:38597987..38598021,+!p2@MAFF!1.71!289.86!MAFF;;chr1:37940170..37940190,+!p1@ZC3H12A!1.70!565.95!ZC3H12A;;chr11:615942..615957,-!p1@IRF7!1.70!443.82!IRF7;;chr6:126240442..126240459,+!p4@NCOA7!1.70!62.44!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!1.69!119.07!NCOA7;;chr14:35872926..35872951,-!p4@NFKBIA!1.69!67.34!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.68!303.94!REL;;chr8:123793988..123794016,+!p1@ZHX2!1.68!81.42!ZHX2;;chr10:104155659..104155676,+!p4@NFKB2!1.68!58.16!NFKB2;;chr21:34442439..34442455,+!p1@OLIG1!1.67!45.91!OLIG1;;chr10:51572339..51572376,+!p4@NCOA4!1.65!95.19!NCOA4;;chr2:70165961..70165981,+!p8@MXD1!1.65!43.77!MXD1;;chr12:54778351..54778378,-!p6@ZNF385A!1.64!42.85!ZNF385A;;chr14:35872414..35872425,-!p7@NFKBIA!1.63!46.52!NFKBIA;;chr10:31288370..31288393,-!p3@ZNF438!1.63!41.93!ZNF438;;chr10:35484090..35484104,+!p6@CREM!1.63!41.32!CREM;;chr20:48599506..48599526,+!p1@SNAI1!1.62!252.21!SNAI1;;chr7:106809470..106809481,+!p2@HBP1!1.62!56.63!HBP1;;chr3:39195037..39195069,-!p2@CSRNP1!1.61!238.44!CSRNP1;;chr14:35872542..35872553,-!p10@NFKBIA!1.61!39.48!NFKBIA;;chr10:104154246..104154347,+!p3@NFKB2!1.60!227.73!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.60!95.80!NFKBIA;;chr4:106066712..106066728,+!p8@TET2!1.60!38.87!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.91!PLAGL1;;chr9:102584278..102584285,+!p5@NR4A3!1.58!37.34!NR4A3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.04!ZBED1;;chr21:36260295..36260310,-!p3@RUNX1!1.57!57.54!RUNX1;;chr6:126240463..126240489,+!p6@NCOA7!1.57!40.10!NCOA7;;chr4:106066776..106066791,+!p9@TET2!1.57!35.81!TET2;;chr6:12012170..12012245,+!p1@HIVEP1!1.56!169.57!HIVEP1;;chr2:145271342..145271377,-!p5@ZEB2!1.56!35.51!ZEB2;;chrX:129244454..129244488,-!p1@ELF4!1.55!237.22!ELF4;;chr2:97202480..97202499,+!p1@ARID5A!1.54!322.61!ARID5A;;chr9:129567282..129567353,+!p1@ZBTB43!1.52!402.50!ZBTB43;;chr6:44233252..44233296,-!p1@NFKBIE!1.52!303.02!NFKBIE;;chr18:3449330..3449344,+!p10@TGIF1!1.52!41.93!TGIF1;;chr19:54058073..54058088,+!p1@ZNF331!1.52!31.83!ZNF331;;chr19:45252008..45252024,+!p2@BCL3!1.50!97.33!BCL3;;chr2:70314240..70314256,+!p4@PCBP1!1.50!61.83!PCBP1;;chr2:70166156..70166179,+!p4@MXD1!1.50!30.30!MXD1;;chr13:41593425..41593480,-!p1@ELF1!1.49!184.26!ELF1;;chr5:137804484..137804498,+!p2@EGR1!1.49!115.70!EGR1;;chr19:47616992..47617011,-!p4@ZC3H4!1.49!62.14!ZC3H4;;chr11:47399920..47399931,-!p7@SPI1!1.49!30.00!SPI1;;chr3:150126101..150126118,+!p6@TSC22D2!1.48!46.52!TSC22D2;;chr21:40177845..40177863,+!p1@ETS2!1.47!1590.11!ETS2;;chr4:106068026..106068084,+!p1@TET2!1.47!245.79!TET2;;chrX:153305962..153305995,-!p5@MECP2!1.47!28.77!MECP2;;chr1:38325227..38325246,-!p2@MTF1!1.46!37.95!MTF1;;chr4:103423079..103423112,+!p4@NFKB1!1.46!28.16!NFKB1;;chr11:47400045..47400060,-!p6@SPI1!1.46!28.16!SPI1;;chr2:191885737..191885750,-!p4@STAT1!1.46!27.85!STAT1;;chr6:15246200..15246214,+!p2@JARID2!1.45!74.07!JARID2;;chr21:30673091..30673135,+!p7@BACH1!1.45!27.24!BACH1;;chr10:35416142..35416169,+!p3@CREM!1.44!68.56!CREM;;chr11:65430554..65430579,-!p3@RELA!1.44!65.81!RELA;;chr1:221052776..221052799,+!p1@HLX!1.44!47.44!HLX;;chr4:106066730..106066754,+!p6@TET2!1.44!26.63!TET2;;chr2:231090471..231090504,+!p2@SP140!1.44!26.32!SP140;;chr2:70166258..70166288,+!p5@MXD1!1.44!26.32!MXD1;;chr7:50344289..50344323,+!p1@IKZF1!1.44!26.32!IKZF1;;chr6:12011943..12012015,+!p2@HIVEP1!1.43!80.81!HIVEP1;;chr6:391743..391759,+!p1@IRF4!1.43!25.71!IRF4;;chr2:68615063..68615089,+!p4@PLEK!1.42!25.40!PLEK;;chr10:3827371..3827386,-!p2@KLF6!1.41!199.26!KLF6;;chr2:70166988..70167021,+!p7@MXD1!1.41!24.79!MXD1;;chr21:30671690..30671762,+!p2@BACH1!1.40!79.28!BACH1;;chr2:28618532..28618610,+!p4@FOSL2!1.40!40.40!FOSL2;;chr3:101575889..101575903,+!p3@NFKBIZ!1.39!23.57!NFKBIZ;;chr4:83822246..83822277,+!p5@THAP9!1.39!23.57!THAP9;;chr6:106534230..106534254,+!p2@PRDM1!1.38!56.32!PRDM1;;chr18:3448455..3448480,+!p5@TGIF1!1.38!41.63!TGIF1;;chr2:231090433..231090469,+!p1@SP140!1.38!23.26!SP140;;chr21:30671235..30671253,+!p1@BACH1!1.37!275.78!BACH1;;chr18:77155922..77155939,+!p1@NFATC1!1.37!60.91!NFATC1;;chr18:3449720..3449749,+!p2@TGIF1!1.37!46.52!TGIF1;;chr2:145277882..145277967,-!p3@ZEB2!1.37!37.95!ZEB2;;chr9:94173455..94173468,-!p4@NFIL3!1.37!22.34!NFIL3;;chr10:104155455..104155479,+!p1@NFKB2!1.36!308.53!NFKB2;;chr12:48298765..48298783,-!p2@VDR!1.36!45.30!VDR;;chr4:83821967..83821998,+!p3@THAP9!1.35!26.32!THAP9;;chr2:73520667..73520683,-!p1@EGR4!1.35!21.43!EGR4;;chr21:30672433..30672464,+!p6@BACH1!1.35!21.43!BACH1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.70!ETV6;;chr21:40177892..40177903,+!p2@ETS2!1.34!81.11!ETS2;;chr10:35484804..35484902,+!p2@CREM!1.34!77.44!CREM;;chr12:96588368..96588394,+!p3@ELK3!1.34!54.79!ELK3;;chr6:12012249..12012266,+!p5@HIVEP1!1.34!36.12!HIVEP1;;chr2:231084639..231084654,-!p2@SP110!1.34!34.59!SP110;;chr12:72056897..72056908,+!p12@THAP2!1.34!21.12!THAP2;;chr2:28615716..28615733,+!p1@FOSL2!1.33!928.35!FOSL2;;chr2:70142189..70142223,+!p2@MXD1!1.32!139.57!MXD1;;chr2:192015677..192015691,-!p3@STAT4!1.32!19.90!STAT4;;chr12:72056706..72056717,+!p10@THAP2!1.32!19.90!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.31!22.34!RARA;;chr4:83822294..83822306,+!p8@THAP9!1.31!19.28!THAP9;;chr3:170075436..170075520,+!p1@SKIL!1.30!399.75!SKIL;;chr7:128577972..128578047,+!p1@IRF5!1.30!29.38!IRF5;;chr19:54041669..54041697,+!p2@ZNF331!1.30!18.98!ZNF331;;chr7:115670792..115670797,-!p2@TFEC!1.29!18.67!TFEC;;chrX:129244430..129244442,-!p5@ELF4!1.29!18.67!ELF4;;chrX:153305741..153305753,-!p4@MECP2!1.29!18.37!MECP2;;chr14:75745523..75745537,+!p1@FOS!1.28!2090.55!FOS;;chr11:615570..615721,-!p2@IRF7!1.28!35.20!IRF7;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.06!LRRFIP1;;chr18:3449618..3449634,+!p13@TGIF1!1.26!21.12!TGIF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.25!88.46!LRRFIP1;;chr19:45250948..45250998,+!p3@BCL3!1.25!41.63!BCL3;;chr18:3449586..3449617,+!p8@TGIF1!1.25!26.63!TGIF1;;chr3:39195139..39195150,-!p3@CSRNP1!1.25!21.43!CSRNP1;;chr12:96588219..96588263,+!p2@ELK3!1.24!115.70!ELK3;;chr4:81104895..81104920,+!p2@PRDM8!1.24!24.49!PRDM8;;chr3:39195075..39195088,-!p1@CSRNP1!1.23!98.56!CSRNP1;;chr5:142782823..142782854,-!p3@NR3C1!1.23!22.96!NR3C1;;chr9:110252035..110252057,-!p1@KLF4!1.22!242.11!KLF4;;chr7:17338266..17338282,+!p1@AHR!1.22!165.29!AHR;;chr2:157199008..157199023,-!p3@NR4A2!1.22!32.44!NR4A2;;chr10:3827389..3827408,-!p1@KLF6!1.21!1148.12!KLF6;;chr1:158979872..158979898,+!p3@IFI16!1.21!46.22!IFI16;;chr9:3525727..3525828,-!p2@RFX3!1.21!38.26!RFX3;;chr19:19496539..19496576,+!p8@GATAD2A!1.21!26.63!GATAD2A;;chr2:61108808..61108821,+!p3@REL!1.21!19.28!REL;;chr20:48807351..48807384,+!p1@CEBPB!1.20!1481.14!CEBPB;;chr1:157108130..157108173,-!p1@ETV3!1.20!105.29!ETV3;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.69!CREB1;;chr1:161736038..161736056,+!p4@ATF6!1.20!34.59!ATF6;;chr8:116681123..116681143,-!p4@TRPS1!1.20!28.77!TRPS1;;chr18:3449527..3449582,+!p6@TGIF1!1.20!28.47!TGIF1;;chr17:40440225..40440268,+!p3@STAT5A!1.20!18.98!STAT5A;;chr11:65430535..65430549,-!p4@RELA!1.20!17.45!RELA;;chr17:38497715..38497734,+!p8@RARA!1.20!15.00!RARA;;chr8:53373491..53373506,-!p4@ST18!1.20!15.00!ST18;;chr12:72056684..72056693,+!p13@THAP2!1.20!14.69!THAP2;;chr2:70166499..70166536,+!p6@MXD1!1.20!14.69!MXD1;;chr19:12902289..12902307,+!p1@JUNB!1.19!3252.14!JUNB;;chr9:117150254..117150271,-!p1@AKNA!1.19!39.79!AKNA;;chr8:72755203..72755239,-!p10@MSC!1.18!14.08!MSC;;chr2:145277589..145277612,-!p12@Z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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0011106,FF:11864-125B1 | |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0011106,FF:11864-125B1 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11864-125B1 | |id=FF:11864-125B1 | ||
|is_a=EFO:0002091;;FF:0011106 | |is_a=EFO:0002091;;FF:0011106 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13469 | |library_id=CNhs13469 | ||
| | |library_id_phase_based=2:CNhs13469 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11864 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11864 | |||
|name=CD14+ monocytes - treated with Group A streptococci, donor1 | |name=CD14+ monocytes - treated with Group A streptococci, donor1 | ||
|namespace= | |namespace= | ||
Line 50: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13469,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13469,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 89: | Line 101: | ||
|top_motifs=FOS_FOS{B,L1}_JUN{B,D}:6.52662133855;BACH2:6.2801498846;FOSL2:6.25186733072;NFE2:5.99051151103;HLF:5.93374894033;CEBPA,B_DDIT3:5.50979281599;IRF7:5.27619717537;NFIL3:5.0132627994;IRF1,2:4.94432627653;NFE2L2:4.79347267943;NFKB1_REL_RELA:4.71834689462;PAX2:4.29615829633;FOXP3:4.0517634868;SPIB:4.0260214973;NANOG{mouse}:3.9502568968;PAX8:3.82774561065;NFATC1..3:3.59388884235;NFE2L1:3.53600885156;SPI1:3.5334890953;DMAP1_NCOR{1,2}_SMARC:3.45577303026;NR1H4:3.45059235448;ATF5_CREB3:3.3714282685;STAT5{A,B}:3.27917511649;ETS1,2:3.15123324542;ATF4:3.11746544653;JUN:2.88575817805;SREBF1,2:2.83168090553;RUNX1..3:2.70257374721;ATF6:2.69450705122;PAX3,7:2.59257421266;CDX1,2,4:2.51039214905;CREB1:2.46834450819;MAFB:2.44287525728;ATF2:2.24129141417;HSF1,2:2.18399664378;STAT2,4,6:2.0722643325;HOX{A5,B5}:1.94526297564;XBP1:1.89670057946;FOXN1:1.7875022786;FOXO1,3,4:1.74482820386;HMGA1,2:1.70097966908;RXRA_VDR{dimer}:1.62083572588;PAX1,9:1.51267036318;ALX4:1.34389304002;IKZF1:1.30455346732;ELF1,2,4:1.11468787333;PPARG:1.07840069648;PRDM1:1.02974640053;TGIF1:1.00477030726;EP300:0.973038432294;BPTF:0.916000097269;SRF:0.680611933737;HOXA9_MEIS1:0.641906588691;ZBTB16:0.474409992961;HIF1A:0.455618604524;DBP:0.435123514669;EN1,2:0.382223278994;NR3C1:0.373644763107;PAX4:0.217746292038;HMX1:0.12904419669;TBP:0.0917383472116;GLI1..3:0.0667232472703;PDX1:0.0537738718368;PITX1..3:-0.0668923162374;POU2F1..3:-0.0946850823243;OCT4_SOX2{dimer}:-0.122989797868;ESR1:-0.149630866513;IKZF2:-0.157987294561;NR6A1:-0.171540320764;RFX2..5_RFXANK_RFXAP:-0.260330442713;GATA4:-0.266318641736;SMAD1..7,9:-0.301941847876;FOXM1:-0.305961272662;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.331983134732;HBP1_HMGB_SSRP1_UBTF:-0.375587330125;TFCP2:-0.424675472497;RORA:-0.438650135528;MEF2{A,B,C,D}:-0.47740352187;TLX2:-0.484428548558;FOXL1:-0.498060295011;NANOG:-0.518444431804;MYB:-0.533165578976;EGR1..3:-0.613795548539;NKX3-1:-0.637911181122;POU5F1:-0.652341759208;SPZ1:-0.708225472035;FOXD3:-0.880040324539;T:-0.910418551831;SOX2:-0.917239450919;FOX{D1,D2}:-0.961553809778;AHR_ARNT_ARNT2:-0.969593272202;ESRRA:-0.983130073873;STAT1,3:-1.02471417624;POU3F1..4:-1.06719415153;RBPJ:-1.10708802698;TFAP4:-1.14136281199;HES1:-1.16746152966;RXR{A,B,G}:-1.17592686713;FOXP1:-1.18091586467;MZF1:-1.18119446065;VSX1,2:-1.23573201985;TAL1_TCF{3,4,12}:-1.36847252126;TEF:-1.38931748364;NFIX:-1.40952847436;ALX1:-1.43391287984;NKX2-2,8:-1.46257422523;MED-1{core}:-1.46444487815;POU6F1:-1.47400239327;ADNP_IRX_SIX_ZHX:-1.54392906137;NHLH1,2:-1.57302387966;HNF1A:-1.57336080321;ZNF384:-1.58442022945;ZBTB6:-1.59562768486;ZNF238:-1.59764409758;PRRX1,2:-1.6276950419;HNF4A_NR2F1,2:-1.64792138621;MYFfamily:-1.72827708788;AIRE:-1.72946390814;NKX2-1,4:-1.74164502659;E2F1..5:-1.78153404813;TEAD1:-1.78990294791;PAX6:-1.79309579178;CDC5L:-1.79853695774;HOX{A4,D4}:-1.80099542368;ARID5B:-1.86021690073;GTF2A1,2:-1.8676411418;REST:-1.89207296125;MTE{core}:-1.90500750907;GCM1,2:-1.92190486128;SOX5:-1.9756983215;ZFP161:-1.99002719148;BREu{core}:-2.00404691406;TBX4,5:-2.00794882869;GZF1:-2.0507162337;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.06662203889;FOX{F1,F2,J1}:-2.09234709084;TFDP1:-2.09326390302;PATZ1:-2.12398923223;GTF2I:-2.14304849364;CUX2:-2.14953705861;TFAP2B:-2.15539402526;NKX6-1,2:-2.15765434324;TP53:-2.17393786013;CRX:-2.18696088347;ZIC1..3:-2.21466236345;NKX3-2:-2.240529369;TLX1..3_NFIC{dimer}:-2.24622235755;SP1:-2.28065044298;MAZ:-2.28541295219;RFX1:-2.29028565869;GATA6:-2.297719856;SOX{8,9,10}:-2.30177341231;RREB1:-2.32157353899;MYBL2:-2.43487815952;NKX2-3_NKX2-5:-2.4712542432;UFEwm:-2.5011209282;MTF1:-2.50849597114;EVI1:-2.62968738466;ZEB1:-2.66896424958;XCPE1{core}:-2.67306598291;TFAP2{A,C}:-2.6739916399;HOX{A6,A7,B6,B7}:-2.68509102159;ONECUT1,2:-2.70956217146;HIC1:-2.73185236469;FOXA2:-2.73213323757;GFI1B:-2.74863150529;SNAI1..3:-2.81965497476;KLF4:-2.84871006313;ELK1,4_GABP{A,B1}:-2.87119500396;SOX17:-2.89240740981;ZNF148:-2.91427944869;EBF1:-2.93298345543;ZNF423:-2.95789165116;FOX{I1,J2}:-2.96715658829;POU1F1:-3.07982159448;NFY{A,B,C}:-3.16602216308;NR5A1,2:-3.3802136689;AR:-3.42336809976;PBX1:-3.43067611155;FOXQ1:-3.44736697841;PAX5:-3.49648223519;LMO2:-3.68714223227;GFI1:-3.75070072357;TOPORS:-3.81500786342;bHLH_family:-3.81899608495;NRF1:-3.87521318042;MYOD1:-3.88513415804;LEF1_TCF7_TCF7L1,2:-3.96518739265;YY1:-4.15129292152;LHX3,4:-4.27719995553;HAND1,2:-4.32310585094;ZNF143:-4.71551979531 | |top_motifs=FOS_FOS{B,L1}_JUN{B,D}:6.52662133855;BACH2:6.2801498846;FOSL2:6.25186733072;NFE2:5.99051151103;HLF:5.93374894033;CEBPA,B_DDIT3:5.50979281599;IRF7:5.27619717537;NFIL3:5.0132627994;IRF1,2:4.94432627653;NFE2L2:4.79347267943;NFKB1_REL_RELA:4.71834689462;PAX2:4.29615829633;FOXP3:4.0517634868;SPIB:4.0260214973;NANOG{mouse}:3.9502568968;PAX8:3.82774561065;NFATC1..3:3.59388884235;NFE2L1:3.53600885156;SPI1:3.5334890953;DMAP1_NCOR{1,2}_SMARC:3.45577303026;NR1H4:3.45059235448;ATF5_CREB3:3.3714282685;STAT5{A,B}:3.27917511649;ETS1,2:3.15123324542;ATF4:3.11746544653;JUN:2.88575817805;SREBF1,2:2.83168090553;RUNX1..3:2.70257374721;ATF6:2.69450705122;PAX3,7:2.59257421266;CDX1,2,4:2.51039214905;CREB1:2.46834450819;MAFB:2.44287525728;ATF2:2.24129141417;HSF1,2:2.18399664378;STAT2,4,6:2.0722643325;HOX{A5,B5}:1.94526297564;XBP1:1.89670057946;FOXN1:1.7875022786;FOXO1,3,4:1.74482820386;HMGA1,2:1.70097966908;RXRA_VDR{dimer}:1.62083572588;PAX1,9:1.51267036318;ALX4:1.34389304002;IKZF1:1.30455346732;ELF1,2,4:1.11468787333;PPARG:1.07840069648;PRDM1:1.02974640053;TGIF1:1.00477030726;EP300:0.973038432294;BPTF:0.916000097269;SRF:0.680611933737;HOXA9_MEIS1:0.641906588691;ZBTB16:0.474409992961;HIF1A:0.455618604524;DBP:0.435123514669;EN1,2:0.382223278994;NR3C1:0.373644763107;PAX4:0.217746292038;HMX1:0.12904419669;TBP:0.0917383472116;GLI1..3:0.0667232472703;PDX1:0.0537738718368;PITX1..3:-0.0668923162374;POU2F1..3:-0.0946850823243;OCT4_SOX2{dimer}:-0.122989797868;ESR1:-0.149630866513;IKZF2:-0.157987294561;NR6A1:-0.171540320764;RFX2..5_RFXANK_RFXAP:-0.260330442713;GATA4:-0.266318641736;SMAD1..7,9:-0.301941847876;FOXM1:-0.305961272662;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.331983134732;HBP1_HMGB_SSRP1_UBTF:-0.375587330125;TFCP2:-0.424675472497;RORA:-0.438650135528;MEF2{A,B,C,D}:-0.47740352187;TLX2:-0.484428548558;FOXL1:-0.498060295011;NANOG:-0.518444431804;MYB:-0.533165578976;EGR1..3:-0.613795548539;NKX3-1:-0.637911181122;POU5F1:-0.652341759208;SPZ1:-0.708225472035;FOXD3:-0.880040324539;T:-0.910418551831;SOX2:-0.917239450919;FOX{D1,D2}:-0.961553809778;AHR_ARNT_ARNT2:-0.969593272202;ESRRA:-0.983130073873;STAT1,3:-1.02471417624;POU3F1..4:-1.06719415153;RBPJ:-1.10708802698;TFAP4:-1.14136281199;HES1:-1.16746152966;RXR{A,B,G}:-1.17592686713;FOXP1:-1.18091586467;MZF1:-1.18119446065;VSX1,2:-1.23573201985;TAL1_TCF{3,4,12}:-1.36847252126;TEF:-1.38931748364;NFIX:-1.40952847436;ALX1:-1.43391287984;NKX2-2,8:-1.46257422523;MED-1{core}:-1.46444487815;POU6F1:-1.47400239327;ADNP_IRX_SIX_ZHX:-1.54392906137;NHLH1,2:-1.57302387966;HNF1A:-1.57336080321;ZNF384:-1.58442022945;ZBTB6:-1.59562768486;ZNF238:-1.59764409758;PRRX1,2:-1.6276950419;HNF4A_NR2F1,2:-1.64792138621;MYFfamily:-1.72827708788;AIRE:-1.72946390814;NKX2-1,4:-1.74164502659;E2F1..5:-1.78153404813;TEAD1:-1.78990294791;PAX6:-1.79309579178;CDC5L:-1.79853695774;HOX{A4,D4}:-1.80099542368;ARID5B:-1.86021690073;GTF2A1,2:-1.8676411418;REST:-1.89207296125;MTE{core}:-1.90500750907;GCM1,2:-1.92190486128;SOX5:-1.9756983215;ZFP161:-1.99002719148;BREu{core}:-2.00404691406;TBX4,5:-2.00794882869;GZF1:-2.0507162337;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.06662203889;FOX{F1,F2,J1}:-2.09234709084;TFDP1:-2.09326390302;PATZ1:-2.12398923223;GTF2I:-2.14304849364;CUX2:-2.14953705861;TFAP2B:-2.15539402526;NKX6-1,2:-2.15765434324;TP53:-2.17393786013;CRX:-2.18696088347;ZIC1..3:-2.21466236345;NKX3-2:-2.240529369;TLX1..3_NFIC{dimer}:-2.24622235755;SP1:-2.28065044298;MAZ:-2.28541295219;RFX1:-2.29028565869;GATA6:-2.297719856;SOX{8,9,10}:-2.30177341231;RREB1:-2.32157353899;MYBL2:-2.43487815952;NKX2-3_NKX2-5:-2.4712542432;UFEwm:-2.5011209282;MTF1:-2.50849597114;EVI1:-2.62968738466;ZEB1:-2.66896424958;XCPE1{core}:-2.67306598291;TFAP2{A,C}:-2.6739916399;HOX{A6,A7,B6,B7}:-2.68509102159;ONECUT1,2:-2.70956217146;HIC1:-2.73185236469;FOXA2:-2.73213323757;GFI1B:-2.74863150529;SNAI1..3:-2.81965497476;KLF4:-2.84871006313;ELK1,4_GABP{A,B1}:-2.87119500396;SOX17:-2.89240740981;ZNF148:-2.91427944869;EBF1:-2.93298345543;ZNF423:-2.95789165116;FOX{I1,J2}:-2.96715658829;POU1F1:-3.07982159448;NFY{A,B,C}:-3.16602216308;NR5A1,2:-3.3802136689;AR:-3.42336809976;PBX1:-3.43067611155;FOXQ1:-3.44736697841;PAX5:-3.49648223519;LMO2:-3.68714223227;GFI1:-3.75070072357;TOPORS:-3.81500786342;bHLH_family:-3.81899608495;NRF1:-3.87521318042;MYOD1:-3.88513415804;LEF1_TCF7_TCF7L1,2:-3.96518739265;YY1:-4.15129292152;LHX3,4:-4.27719995553;HAND1,2:-4.32310585094;ZNF143:-4.71551979531 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11864-125B1;search_select_hide=table117:FF:11864-125B1 | |||
}} | }} |
Latest revision as of 18:24, 4 June 2020
Name: | CD14+ monocytes - treated with Group A streptococci, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13469 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13469
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13469
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.094 |
10 | 10 | 0.0233 |
100 | 100 | 0.988 |
101 | 101 | 0.793 |
102 | 102 | 0.914 |
103 | 103 | 0.253 |
104 | 104 | 0.523 |
105 | 105 | 0.128 |
106 | 106 | 9.54512e-4 |
107 | 107 | 0.178 |
108 | 108 | 0.678 |
109 | 109 | 0.332 |
11 | 11 | 0.127 |
110 | 110 | 0.181 |
111 | 111 | 0.0625 |
112 | 112 | 0.296 |
113 | 113 | 0.473 |
114 | 114 | 0.0208 |
115 | 115 | 0.28 |
116 | 116 | 0.86 |
117 | 117 | 0.0709 |
118 | 118 | 0.176 |
119 | 119 | 0.143 |
12 | 12 | 0.356 |
120 | 120 | 0.77 |
121 | 121 | 0.618 |
122 | 122 | 0.709 |
123 | 123 | 0.304 |
124 | 124 | 0.503 |
125 | 125 | 0.199 |
126 | 126 | 0.255 |
127 | 127 | 0.513 |
128 | 128 | 0.0463 |
129 | 129 | 0.329 |
13 | 13 | 0.098 |
130 | 130 | 0.258 |
131 | 131 | 0.902 |
132 | 132 | 0.0933 |
133 | 133 | 0.496 |
134 | 134 | 0.436 |
135 | 135 | 0.928 |
136 | 136 | 0.879 |
137 | 137 | 0.0512 |
138 | 138 | 0.349 |
139 | 139 | 0.0611 |
14 | 14 | 0.534 |
140 | 140 | 0.49 |
141 | 141 | 0.277 |
142 | 142 | 0.031 |
143 | 143 | 0.0179 |
144 | 144 | 0.508 |
145 | 145 | 0.256 |
146 | 146 | 0.827 |
147 | 147 | 0.894 |
148 | 148 | 0.0138 |
149 | 149 | 0.858 |
15 | 15 | 0.146 |
150 | 150 | 0.375 |
151 | 151 | 0.397 |
152 | 152 | 0.327 |
153 | 153 | 0.549 |
154 | 154 | 0.694 |
155 | 155 | 0.889 |
156 | 156 | 0.947 |
157 | 157 | 0.521 |
158 | 158 | 0.0697 |
159 | 159 | 0.16 |
16 | 16 | 0.318 |
160 | 160 | 0.35 |
161 | 161 | 0.428 |
162 | 162 | 0.275 |
163 | 163 | 0.0981 |
164 | 164 | 0.0918 |
165 | 165 | 0.292 |
166 | 166 | 0.778 |
167 | 167 | 0.25 |
168 | 168 | 0.174 |
169 | 169 | 0.0125 |
17 | 17 | 0.22 |
18 | 18 | 0.0818 |
19 | 19 | 0.448 |
2 | 2 | 0.53 |
20 | 20 | 0.167 |
21 | 21 | 0.756 |
22 | 22 | 0.334 |
23 | 23 | 0.0322 |
24 | 24 | 0.482 |
25 | 25 | 0.531 |
26 | 26 | 0.0465 |
27 | 27 | 0.521 |
28 | 28 | 0.41 |
29 | 29 | 0.244 |
3 | 3 | 0.111 |
30 | 30 | 0.407 |
31 | 31 | 0.756 |
32 | 32 | 0.642 |
33 | 33 | 0.251 |
34 | 34 | 0.776 |
35 | 35 | 0.108 |
36 | 36 | 0.0526 |
37 | 37 | 0.0786 |
38 | 38 | 0.362 |
39 | 39 | 0.745 |
4 | 4 | 0.833 |
40 | 40 | 0.18 |
41 | 41 | 0.0252 |
42 | 42 | 0.332 |
43 | 43 | 0.0208 |
44 | 44 | 0.634 |
45 | 45 | 0.836 |
46 | 46 | 0.17 |
47 | 47 | 0.478 |
48 | 48 | 0.451 |
49 | 49 | 0.116 |
5 | 5 | 0.311 |
50 | 50 | 0.988 |
51 | 51 | 0.473 |
52 | 52 | 0.399 |
53 | 53 | 0.614 |
54 | 54 | 0.421 |
55 | 55 | 0.462 |
56 | 56 | 0.631 |
57 | 57 | 0.831 |
58 | 58 | 0.168 |
59 | 59 | 0.217 |
6 | 6 | 0.818 |
60 | 60 | 0.051 |
61 | 61 | 0.722 |
62 | 62 | 0.083 |
63 | 63 | 0.469 |
64 | 64 | 0.445 |
65 | 65 | 0.201 |
66 | 66 | 0.196 |
67 | 67 | 0.469 |
68 | 68 | 0.808 |
69 | 69 | 0.358 |
7 | 7 | 0.266 |
70 | 70 | 0.0523 |
71 | 71 | 0.0235 |
72 | 72 | 0.142 |
73 | 73 | 0.214 |
74 | 74 | 0.0318 |
75 | 75 | 0.129 |
76 | 76 | 0.148 |
77 | 77 | 0.502 |
78 | 78 | 0.0938 |
79 | 79 | 0.86 |
8 | 8 | 0.319 |
80 | 80 | 0.225 |
81 | 81 | 0.313 |
82 | 82 | 0.129 |
83 | 83 | 0.0306 |
84 | 84 | 0.0904 |
85 | 85 | 0.029 |
86 | 86 | 0.0825 |
87 | 87 | 0.537 |
88 | 88 | 0.803 |
89 | 89 | 0.213 |
9 | 9 | 0.323 |
90 | 90 | 0.102 |
91 | 91 | 0.392 |
92 | 92 | 0.278 |
93 | 93 | 0.527 |
94 | 94 | 0.0858 |
95 | 95 | 0.39 |
96 | 96 | 0.352 |
97 | 97 | 0.552 |
98 | 98 | 0.0996 |
99 | 99 | 0.0894 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13469
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011106 human CD14-positive monocytes - treated with Group A streptococci sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0011106 (human CD14-positive monocytes - treated with Group A streptococci sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)