FF:11869-125B6: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with B-glucan, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13474
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-10
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005846

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13474		CAGE		DRX008135		DRR009007

Accession ID Hg19

Library id		BAM		CTSS
CNhs13474		DRZ000432		DRZ001817

Accession ID Hg38

Library id		BAM		CTSS
CNhs13474		DRZ011782		DRZ013167

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.419
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0658
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.604
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.496
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0908
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0908
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.285
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.456
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.833
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.166
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.419
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.285
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.0908
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.402
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.392
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0875
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.695
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.285
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.335
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.395
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.23
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.25
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.538
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.813
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.335
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.898
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.462
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.536
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.936
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.285
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.441
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.674
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.23
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.353
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.74
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.74
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.285
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.835
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.285
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.166
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.663
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.23
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.411
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.23
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.848
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.23
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.23
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.166
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.23
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.23
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13474

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.23847e-8
MA0003.1	MA0003.1	0.366
MA0004.1	MA0004.1	0.323
MA0006.1	MA0006.1	0.946
MA0007.1	MA0007.1	0.689
MA0009.1	MA0009.1	0.224
MA0014.1	MA0014.1	1
MA0017.1	MA0017.1	0.0559
MA0018.2	MA0018.2	0.12
MA0019.1	MA0019.1	0.513
MA0024.1	MA0024.1	0.00154
MA0025.1	MA0025.1	0.00697
MA0027.1	MA0027.1	0.848
MA0028.1	MA0028.1	0.127
MA0029.1	MA0029.1	0.244
MA0030.1	MA0030.1	0.146
MA0031.1	MA0031.1	0.322
MA0035.2	MA0035.2	0.237
MA0038.1	MA0038.1	0.102
MA0039.2	MA0039.2	0.732
MA0040.1	MA0040.1	0.456
MA0041.1	MA0041.1	0.549
MA0042.1	MA0042.1	0.71
MA0043.1	MA0043.1	5.86409e-6
MA0046.1	MA0046.1	0.0102
MA0047.2	MA0047.2	0.604
MA0048.1	MA0048.1	0.792
MA0050.1	MA0050.1	3.39288e-5
MA0051.1	MA0051.1	0.045
MA0052.1	MA0052.1	0.0422
MA0055.1	MA0055.1	0.951
MA0057.1	MA0057.1	0.545
MA0058.1	MA0058.1	0.143
MA0059.1	MA0059.1	0.19
MA0060.1	MA0060.1	4.04544e-11
MA0061.1	MA0061.1	1.1148e-7
MA0062.2	MA0062.2	0.642
MA0065.2	MA0065.2	0.0101
MA0066.1	MA0066.1	0.0244
MA0067.1	MA0067.1	4.15791e-5
MA0068.1	MA0068.1	0.199
MA0069.1	MA0069.1	0.729
MA0070.1	MA0070.1	0.0207
MA0071.1	MA0071.1	0.304
MA0072.1	MA0072.1	0.903
MA0073.1	MA0073.1	0.416
MA0074.1	MA0074.1	0.112
MA0076.1	MA0076.1	0.103
MA0077.1	MA0077.1	0.19
MA0078.1	MA0078.1	0.436
MA0079.2	MA0079.2	0.298
MA0080.2	MA0080.2	2.66749e-14
MA0081.1	MA0081.1	2.38443e-4
MA0083.1	MA0083.1	0.77
MA0084.1	MA0084.1	0.753
MA0087.1	MA0087.1	0.966
MA0088.1	MA0088.1	0.54
MA0090.1	MA0090.1	0.224
MA0091.1	MA0091.1	0.537
MA0092.1	MA0092.1	0.287
MA0093.1	MA0093.1	0.361
MA0099.2	MA0099.2	4.73723e-41
MA0100.1	MA0100.1	0.646
MA0101.1	MA0101.1	1.23186e-7
MA0102.2	MA0102.2	1.67667e-8
MA0103.1	MA0103.1	0.365
MA0104.2	MA0104.2	0.584
MA0105.1	MA0105.1	7.57421e-11
MA0106.1	MA0106.1	0.79
MA0107.1	MA0107.1	3.0725e-9
MA0108.2	MA0108.2	0.0647
MA0111.1	MA0111.1	0.509
MA0112.2	MA0112.2	5.05272e-5
MA0113.1	MA0113.1	0.934
MA0114.1	MA0114.1	0.154
MA0115.1	MA0115.1	0.884
MA0116.1	MA0116.1	3.64894e-4
MA0117.1	MA0117.1	0.16
MA0119.1	MA0119.1	0.246
MA0122.1	MA0122.1	0.928
MA0124.1	MA0124.1	0.572
MA0125.1	MA0125.1	0.225
MA0131.1	MA0131.1	0.45
MA0135.1	MA0135.1	0.631
MA0136.1	MA0136.1	4.6437e-15
MA0137.2	MA0137.2	0.728
MA0138.2	MA0138.2	0.897
MA0139.1	MA0139.1	0.93
MA0140.1	MA0140.1	0.153
MA0141.1	MA0141.1	0.0887
MA0142.1	MA0142.1	0.699
MA0143.1	MA0143.1	0.825
MA0144.1	MA0144.1	0.158
MA0145.1	MA0145.1	0.258
MA0146.1	MA0146.1	0.118
MA0147.1	MA0147.1	0.679
MA0148.1	MA0148.1	0.574
MA0149.1	MA0149.1	0.18
MA0150.1	MA0150.1	2.0963e-18
MA0152.1	MA0152.1	0.787
MA0153.1	MA0153.1	0.001
MA0154.1	MA0154.1	0.00114
MA0155.1	MA0155.1	0.685
MA0156.1	MA0156.1	1.17605e-7
MA0157.1	MA0157.1	0.879
MA0159.1	MA0159.1	0.0194
MA0160.1	MA0160.1	0.0419
MA0162.1	MA0162.1	0.725
MA0163.1	MA0163.1	4.19248e-8
MA0164.1	MA0164.1	0.532
MA0258.1	MA0258.1	0.00386
MA0259.1	MA0259.1	0.674

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13474

Novel motif	Logo	P-value
1	1	0.118
10	10	0.0212
100	100	0.899
101	101	0.849
102	102	0.726
103	103	0.273
104	104	0.562
105	105	0.182
106	106	5.28675e-4
107	107	0.168
108	108	0.935
109	109	0.241
11	11	0.136
110	110	0.24
111	111	0.0283
112	112	0.305
113	113	0.517
114	114	0.0107
115	115	0.23
116	116	0.786
117	117	0.0415
118	118	0.179
119	119	0.123
12	12	0.311
120	120	0.948
121	121	0.623
122	122	0.7
123	123	0.0762
124	124	0.544
125	125	0.374
126	126	0.171
127	127	0.358
128	128	0.0241
129	129	0.447
13	13	0.154
130	130	0.16
131	131	0.76
132	132	0.0719
133	133	0.805
134	134	0.495
135	135	0.584
136	136	0.934
137	137	0.0121
138	138	0.269
139	139	0.0385
14	14	0.433
140	140	0.117
141	141	0.266
142	142	0.0907
143	143	0.0157
144	144	0.564
145	145	0.365
146	146	0.545
147	147	0.544
148	148	0.00776
149	149	0.651
15	15	0.169
150	150	0.463
151	151	0.333
152	152	0.157
153	153	0.514
154	154	0.635
155	155	0.619
156	156	0.528
157	157	0.368
158	158	0.038
159	159	0.473
16	16	0.319
160	160	0.373
161	161	0.521
162	162	0.412
163	163	0.14
164	164	0.073
165	165	0.196
166	166	0.614
167	167	0.219
168	168	0.263
169	169	0.00637
17	17	0.164
18	18	0.113
19	19	0.336
2	2	0.838
20	20	0.284
21	21	0.525
22	22	0.242
23	23	0.042
24	24	0.322
25	25	0.425
26	26	0.035
27	27	0.795
28	28	0.458
29	29	0.24
3	3	0.0916
30	30	0.49
31	31	0.714
32	32	0.933
33	33	0.334
34	34	0.547
35	35	0.116
36	36	0.124
37	37	0.0729
38	38	0.348
39	39	0.782
4	4	0.975
40	40	0.172
41	41	0.00682
42	42	0.378
43	43	0.0315
44	44	0.942
45	45	0.672
46	46	0.14
47	47	0.518
48	48	0.439
49	49	0.106
5	5	0.259
50	50	0.969
51	51	0.398
52	52	0.315
53	53	0.391
54	54	0.339
55	55	0.43
56	56	0.607
57	57	0.814
58	58	0.141
59	59	0.134
6	6	0.541
60	60	0.0447
61	61	0.636
62	62	0.0649
63	63	0.472
64	64	0.4
65	65	0.206
66	66	0.212
67	67	0.454
68	68	0.666
69	69	0.556
7	7	0.275
70	70	0.0219
71	71	0.0285
72	72	0.283
73	73	0.134
74	74	0.0798
75	75	0.0915
76	76	0.181
77	77	0.401
78	78	0.102
79	79	0.344
8	8	0.336
80	80	0.311
81	81	0.364
82	82	0.107
83	83	0.0518
84	84	0.233
85	85	0.0115
86	86	0.051
87	87	0.523
88	88	0.641
89	89	0.164
9	9	0.37
90	90	0.0615
91	91	0.313
92	92	0.219
93	93	0.579
94	94	0.0399
95	95	0.315
96	96	0.36
97	97	0.809
98	98	0.109
99	99	0.0996

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13474

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011102 human CD14-positive monocytes - treated with B-glucan sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000630 (beta-glucan treatment sample)
0011102 (human CD14-positive monocytes - treated with B-glucan sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005846
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008135;DRR009007;DRZ000432;DRZ001817;DRZ011782;DRZ013167
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000630,FF:0011102
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.08!1202.36!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.87!746.33!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.56!357.94!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.43!265.90!TFEC;;chr21:34442439..34442455,+!p1@OLIG1!2.40!249.16!OLIG1;;chr20:39317868..39317884,-!p1@MAFB!2.24!1930.79!MAFB;;chr10:64576105..64576133,-!p1@EGR2!2.19!305.41!EGR2;;chr11:47399947..47399961,-!p3@SPI1!2.18!150.85!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.09!122.26!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.04!107.85!IRF8;;chr2:70142232..70142251,+!p1@MXD1!1.99!510.88!MXD1;;chr6:106534192..106534224,+!p1@PRDM1!1.94!234.75!PRDM1;;chr11:47399996..47400014,-!p4@SPI1!1.92!82.51!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.88!74.61!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.83!833.26!ZEB2;;chr19:50432132..50432217,+!p2@ATF5!1.81!75.77!ATF5;;chr1:25256756..25256774,-!p1@RUNX3!1.80!112.50!RUNX3;;chr14:35872453..35872485,-!p2@NFKBIA!1.77!139.22!NFKBIA;;chr10:31288398..31288455,-!p2@ZNF438!1.72!60.20!ZNF438;;chr19:45971246..45971265,+!p1@FOSB!1.68!826.05!FOSB;;chr12:72056749..72056767,+!p6@THAP2!1.68!51.60!THAP2;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!47.18!ZNF385A;;chr10:35484053..35484076,+!p1@CREM!1.67!112.03!CREM;;chr10:51572408..51572454,+!p3@NCOA4!1.63!234.75!NCOA4;;chr12:72056800..72056834,+!p1@THAP2!1.63!55.55!THAP2;;chr6:106534230..106534254,+!p2@PRDM1!1.60!94.60!PRDM1;;chr14:35873947..35873965,-!p1@NFKBIA!1.59!2243.17!NFKBIA;;chr10:51572339..51572376,+!p4@NCOA4!1.59!82.51!NCOA4;;chr8:22550982..22550999,-!p1@EGR3!1.58!100.41!EGR3;;chr10:31288370..31288393,-!p3@ZNF438!1.58!36.96!ZNF438;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.56!IKZF1;;chr2:145275162..145275202,-!p2@ZEB2!1.55!194.54!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.55!173.86!NR4A2;;chr11:47400045..47400060,-!p6@SPI1!1.54!33.93!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.53!313.08!NFKBIE;;chr14:35872962..35873025,-!p3@NFKBIA!1.53!81.82!NFKBIA;;chr12:52445218..52445237,+!p1@NR4A1!1.52!382.58!NR4A1;;chr2:145277882..145277967,-!p3@ZEB2!1.52!55.09!ZEB2;;chr10:104155659..104155676,+!p4@NFKB2!1.52!39.51!NFKB2;;chr10:64018918..64018936,+!p2@ZNF365!1.52!31.84!ZNF365;;chr21:34442540..34442560,+!p2@OLIG1!1.50!30.68!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!1.49!434.64!ZNF267;;chr2:68592394..68592405,+!p2@PLEK!1.48!29.05!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.47!564.80!NFKB1;;chr10:104155480..104155534,+!p2@NFKB2!1.47!176.88!NFKB2;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.36!OLIG2;;chr1:212782094..212782109,+!p1@ATF3!1.46!721.23!ATF3;;chr10:104154246..104154347,+!p3@NFKB2!1.46!163.17!NFKB2;;chr19:36391434..36391450,-!p1@NFKBID!1.46!53.23!NFKBID;;chr12:72056773..72056796,+!p3@THAP2!1.46!36.03!THAP2;;chr2:61108695..61108753,+!p1@REL!1.45!179.90!REL;;chr9:102584262..102584276,+!p1@NR4A3!1.45!59.73!NR4A3;;chr7:128577972..128578047,+!p1@IRF5!1.45!41.84!IRF5;;chr6:144385698..144385742,-!p2@PLAGL1!1.45!32.77!PLAGL1;;chr19:45252008..45252024,+!p2@BCL3!1.44!84.84!BCL3;;chrX:129244454..129244488,-!p1@ELF4!1.40!169.67!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.40!148.29!ELF1;;chr1:38325227..38325246,-!p2@MTF1!1.38!30.91!MTF1;;chr11:47399920..47399931,-!p7@SPI1!1.38!23.24!SPI1;;chr19:42636586..42636607,-!p1@POU2F2!1.37!60.90!POU2F2;;chr9:102584159..102584174,+!p2@NR4A3!1.37!39.51!NR4A3;;chr2:70314240..70314256,+!p4@PCBP1!1.36!44.39!PCBP1;;chr9:102584128..102584144,+!p3@NR4A3!1.36!41.14!NR4A3;;chr3:12330560..12330579,+!p1@PPARG!1.36!24.87!PPARG;;chr11:65430554..65430579,-!p3@RELA!1.35!53.46!RELA;;chrX:153305787..153305807,-!p3@MECP2!1.33!20.22!MECP2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.31!231.73!ZC3H12A;;chr6:15246200..15246214,+!p2@JARID2!1.31!52.30!JARID2;;chr2:28618532..28618610,+!p4@FOSL2!1.31!33.00!FOSL2;;chr22:38597987..38598021,+!p2@MAFF!1.29!111.33!MAFF;;chr6:12012170..12012245,+!p1@HIVEP1!1.29!92.04!HIVEP1;;chr3:12329397..12329433,+!p2@PPARG!1.29!41.60!PPARG;;chr21:36260295..36260310,-!p3@RUNX1!1.29!29.52!RUNX1;;chr2:145277589..145277612,-!p12@ZEB2!1.29!18.59!ZEB2;;chr20:48599506..48599526,+!p1@SNAI1!1.28!113.19!SNAI1;;chr19:50432104..50432126,+!p6@ATF5!1.27!17.43!ATF5;;chr4:106068026..106068084,+!p1@TET2!1.26!152.47!TET2;;chr21:30671235..30671253,+!p1@BACH1!1.25!211.28!BACH1;;chr21:30671690..30671762,+!p2@BACH1!1.25!56.71!BACH1;;chr14:35872926..35872951,-!p4@NFKBIA!1.25!23.71!NFKBIA;;chr20:48807351..48807384,+!p1@CEBPB!1.24!1637.23!CEBPB;;chr12:48298765..48298783,-!p2@VDR!1.24!34.17!VDR;;chr2:70167296..70167306,+!p3@MXD1!1.23!24.17!MXD1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.22!21.85!NFKBIZ;;chr17:38497662..38497713,+!p4@RARA!1.22!18.13!RARA;;chr7:17338266..17338282,+!p1@AHR!1.21!162.24!AHR;;chr1:221052776..221052799,+!p1@HLX!1.21!27.43!HLX;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.11!BCL3;;chr4:103423079..103423112,+!p4@NFKB1!1.21!15.11!NFKB1;;chr2:28615716..28615733,+!p1@FOSL2!1.20!682.41!FOSL2;;chr10:104155455..104155479,+!p1@NFKB2!1.18!201.75!NFKB2;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.79!BCL3;;chr14:35872494..35872511,-!p5@NFKBIA!1.18!18.59!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!1.17!709.14!NFKBIZ;;chr9:129567282..129567353,+!p1@ZBTB43!1.17!179.90!ZBTB43;;chr2:238600933..238600985,+!p3@LRRFIP1!1.17!74.84!LRRFIP1;;chr7:17338324..17338341,+!p3@AHR!1.17!46.25!AHR;;chr8:123793988..123794016,+!p1@ZHX2!1.17!24.17!ZHX2;;chr6:106535598..106535637,+!p7@PRDM1!1.17!13.95!PRDM1;;chr8:53373491..53373506,-!p4@ST18!1.17!13.95!ST18;;chr2:97202480..97202499,+!p1@ARID5A!1.16!133.65!ARID5A;;chr12:11802753..11802834,+!p2@ETV6!1.16!65.31!ETV6;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.65!RUNX1;;chr6:12011943..12012015,+!p2@HIVEP1!1.16!42.77!HIVEP1;;chr18:3449720..3449749,+!p2@TGIF1!1.16!28.36!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.16!23.71!GATAD2A;;chrX:129244430..129244442,-!p5@ELF4!1.16!13.48!ELF4;;chr21:30672433..30672464,+!p6@BACH1!1.16!13.48!BACH1;;chr11:65430535..65430549,-!p4@RELA!1.15!15.34!RELA;;chr13:41593392..41593403,-!p7@ELF1!1.15!13.25!ELF1;;chr2:145271342..145271377,-!p5@ZEB2!1.15!13.02!ZEB2;;chr18:3449618..3449634,+!p13@TGIF1!1.14!16.04!TGIF1;;chr1:25256439..25256476,-!p3@RUNX3!1.14!12.78!RUNX3;;chr10:31288329..31288353,-!p7@ZNF438!1.14!12.78!ZNF438;;chr1:157108130..157108173,-!p1@ETV3!1.13!90.88!ETV3;;chr12:48298785..48298828,-!p1@VDR!1.13!66.24!VDR;;chr11:615942..615957,-!p1@IRF7!1.12!115.28!IRF7;;chr7:115670792..115670797,-!p2@TFEC!1.12!12.32!TFEC;;chr9:110252035..110252057,-!p1@KLF4!1.11!189.43!KLF4;;chr19:13213662..13213686,-!p1@LYL1!1.11!17.66!LYL1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.11!11.85!LRRFIP1;;chr19:45504688..45504782,+!p1@RELB!1.10!70.19!RELB;;chr1:156470515..156470542,-!p2@MEF2D!1.10!61.36!MEF2D;;chr20:48809000..48809053,+!p12@CEBPB!1.10!15.34!CEBPB;;chr6:391743..391759,+!p1@IRF4!1.10!11.62!IRF4;;chr6:15246261..15246312,+!p1@JARID2!1.09!275.89!JARID2;;chr3:170075436..170075520,+!p1@SKIL!1.09!243.59!SKIL;;chr5:88178983..88179012,-!p1@MEF2C!1.09!86.70!MEF2C;;chr12:96588279..96588299,+!p4@ELK3!1.09!53.92!ELK3;;chr18:3449586..3449617,+!p8@TGIF1!1.07!17.43!TGIF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.06!23.01!ZBTB25;;chr18:3449527..3449582,+!p6@TGIF1!1.06!20.22!TGIF1;;chr12:96588219..96588263,+!p2@ELK3!1.05!74.14!ELK3;;chr12:54785074..54785122,-!p2@ZNF385A!1.05!15.81!ZNF385A;;chr2:145275228..145275241,-!p11@ZEB2!1.05!12.32!ZEB2;;chr9:117150254..117150271,-!p1@AKNA!1.04!27.43!AKNA;;chr4:81104895..81104920,+!p2@PRDM8!1.04!14.88!PRDM8;;chr19:45254529..45254561,+!p10@BCL3!1.04!13.71!BCL3;;chr6:15246741..15246765,+!p9@JARID2!1.04!9.99!JARID2;;chr3:39195037..39195069,-!p2@CSRNP1!1.03!61.13!CSRNP1;;chr19:33793430..33793447,-!p1@CEBPA!1.03!41.14!CEBPA;;chr6:12012249..12012266,+!p5@HIVEP1!1.03!16.97!HIVEP1;;chr8:71316428..71316459,-!p2@NCOA2!1.03!16.50!NCOA2;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.92!ZNF385A;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!90.88!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!1.02!39.05!CREB1;;chr17:38474489..38474548,+!p1@RARA!1.01!298.90!RARA;;chr19:45251943..45252006,+!p1@BCL3!1.01!250.09!BCL3;;chr10:3827371..3827386,-!p2@KLF6!1.01!80.19!KLF6;;chr18:3448455..3448480,+!p5@TGIF1!1.01!17.43!TGIF1;;chr9:102584241..102584261,+!p4@NR4A3!1.01!14.64!NR4A3;;chr2:113999360..113999386,-!p4@PAX8!1.01!9.30!PAX8;;chr10:35484090..35484104,+!p6@CREM!1.01!9.30!CREM;;chr2:70142189..70142223,+!p2@MXD1!1.00!66.01!MXD1;;chr7:149470641..149470694,-!p1@ZNF467!1.00!41.84!ZNF467;;chr19:19496624..19496660,+!p3@GATAD2A!1.00!41.84!GATAD2A;;chr2:192015701..192015743,-!p1@STAT4!1.00!12.55!STAT4;;chr14:35872414..35872425,-!p7@NFKBIA!1.00!9.99!NFKBIA;;chr2:231090433..231090469,+!p1@SP140!1.00!9.06!SP140;;chr21:40177845..40177863,+!p1@ETS2!0.99!532.03!ETS2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.99!37.89!LRRFIP2;;chr4:185395633..185395651,-!p2@IRF2!0.99!14.18!IRF2;;chr2:61108771..61108789,+!p4@REL!0.99!13.48!REL;;chr3:39195139..39195150,-!p3@CSRNP1!0.99!11.16!CSRNP1;;chr19:47616992..47617011,-!p4@ZC3H4!0.98!18.83!ZC3H4;;chr20:48807456..48807475,+!p3@CEBPB!0.98!16.73!CEBPB;;chr2:61108808..61108821,+!p3@REL!0.98!10.92!REL;;chr14:35872542..35872553,-!p10@NFKBIA!0.98!8.60!NFKBIA;;chr6:20403916..20403965,+!p3@E2F3!0.97!38.58!E2F3;;chr17:38498594..38498661,+!p2@RARA!0.97!28.59!RARA;;chr12:96588368..96588394,+!p3@ELK3!0.97!23.01!ELK3;;chr8:116681150..116681164,-!p5@TRPS1!0.97!16.73!TRPS1;;chr19:12902289..12902307,+!p1@JUNB!0.96!1903.59!JUNB;;chr9:137217986..137218049,+!p3@RXRA!0.96!23.94!RXRA;;chr17:79885537..79885554,-!p2@MAFG!0.96!16.04!MAFG;;chr5:88179195..88179224,-!p3@MEF2C!0.96!13.25!MEF2C;;chr5:142782823..142782854,-!p3@NR3C1!0.96!11.85!NR3C1;;chr19:45254508..45254528,+!p12@BCL3!0.96!8.83!BCL3;;chr9:102584278..102584285,+!p5@NR4A3!0.96!8.14!NR4A3;;chr3:5020939..5020952,+!p2@BHLHE40!0.95!25.57!BHLHE40;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.69!RFX3;;chr8:116681123..116681143,-!p4@TRPS1!0.95!15.81!TRPS1;;chr3:150126101..150126118,+!p6@TSC22D2!0.95!13.25!TSC22D2;;chr3:12392932..12392962,+!p8@PPARG!0.95!7.90!PPARG;;chr21:36260980..36261011,-!p1@RUNX1!0.94!232.89!RUNX1;;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000630,FF:0011102,FF:11869-125B6
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11869-125B6
 |is_a=EFO:0002091;;FF:0011102
 |is_obsolete=
+|library_id=CNhs13474
+|library_id_phase_based=2:CNhs13474
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11869
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11869
 |name=CD14+ monocytes - treated with B-glucan, donor1
 |namespace=
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13474,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 58: / Line 79: @@
 |rna_weight_ug=3.408615
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 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=NFE2L2:3.61166284728;NFE2:3.55104605596;CEBPA,B_DDIT3:3.40857250745;FOSL2:3.40709924997;BACH2:3.3017291014;FOS_FOS{B,L1}_JUN{B,D}:3.26888706741;SREBF1,2:3.19420498304;PAX2:3.17780067225;HLF:2.96531498198;SPIB:2.95486144479;SPI1:2.90705465126;NFE2L1:2.59025226645;ETS1,2:2.4068483029;NFKB1_REL_RELA:2.39216337574;EP300:2.36302804963;NFIL3:2.27954134901;NANOG{mouse}:2.27210607923;FOXP3:2.24142162368;DMAP1_NCOR{1,2}_SMARC:2.20395921315;ATF5_CREB3:2.13027638746;ATF4:2.04252961487;NR1H4:2.00196566377;FOXN1:1.93241994929;RXRA_VDR{dimer}:1.84556019065;RUNX1..3:1.76707608618;CREB1:1.63780376838;IRF1,2:1.5320736887;ATF6:1.50379210989;ELF1,2,4:1.33450629597;HMX1:1.31100552373;JUN:1.30977403314;MAFB:1.28643074997;PDX1:1.21002632295;TGIF1:1.13524989388;FOXD3:1.124219642;STAT2,4,6:1.08285832148;PPARG:1.06129465816;HMGA1,2:1.03056980438;PAX3,7:0.998401433916;IRF7:0.996765426132;BPTF:0.944664445439;ALX4:0.917199936237;PITX1..3:0.896884813662;HIF1A:0.837887252296;TFCP2:0.821042421757;ALX1:0.73136742442;HSF1,2:0.727124854331;GLI1..3:0.724448029159;ATF2:0.671488032631;ZBTB16:0.664503685516;NFATC1..3:0.589634605891;HES1:0.548245619042;HOX{A5,B5}:0.526691422911;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519491934968;PAX8:0.509346423661;SMAD1..7,9:0.505376628025;HBP1_HMGB_SSRP1_UBTF:0.488919450891;ESR1:0.486798083613;CDX1,2,4:0.466592486954;ESRRA:0.464271014953;PAX1,9:0.428592868649;NR6A1:0.401401840655;XBP1:0.339959786669;NANOG:0.326620100725;EN1,2:0.253324517817;FOXO1,3,4:0.24862925849;GATA4:0.237906091387;TLX2:0.219187824053;SPZ1:0.218161940163;SRF:0.105956073187;MYB:0.103259189521;IKZF2:0.102918483796;PRDM1:0.102058865291;FOXM1:-0.00190186591304;FOXP1:-0.0324758902498;T:-0.0414813439201;RFX2..5_RFXANK_RFXAP:-0.0574820930814;FOX{D1,D2}:-0.0780638832302;TBP:-0.11718054424;AHR_ARNT_ARNT2:-0.158326063852;PAX4:-0.160275326485;DBP:-0.162078992935;FOXL1:-0.233049337615;HOXA9_MEIS1:-0.257829378694;MEF2{A,B,C,D}:-0.257996054461;NKX2-2,8:-0.306943014314;STAT5{A,B}:-0.313844463341;FOX{F1,F2,J1}:-0.31412976248;POU2F1..3:-0.330701333592;IKZF1:-0.352316832465;POU5F1:-0.394229539298;MZF1:-0.431203610423;OCT4_SOX2{dimer}:-0.437136566013;NFIX:-0.469722765633;TFAP4:-0.507119331724;EGR1..3:-0.521979497945;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.584794748406;TBX4,5:-0.585428783849;NKX3-1:-0.700558535369;RREB1:-0.706774783453;HNF4A_NR2F1,2:-0.721283512584;REST:-0.744140378108;MYFfamily:-0.780345708591;RXR{A,B,G}:-0.786298993411;NKX3-2:-0.80898577301;ZNF148:-0.852241138074;HNF1A:-0.856364690651;PAX6:-0.873526826051;VSX1,2:-0.874356213925;POU6F1:-0.876790227365;PATZ1:-0.879238077041;ZNF238:-0.886535768297;ZBTB6:-0.905790612311;TAL1_TCF{3,4,12}:-0.911029782722;SOX2:-0.955014699398;GZF1:-1.00035617283;NHLH1,2:-1.04594620284;MED-1{core}:-1.06906520564;MTE{core}:-1.10608345533;PRRX1,2:-1.12423027442;TFAP2{A,C}:-1.14470764251;GTF2A1,2:-1.1574068127;ZIC1..3:-1.1891720721;GATA6:-1.19115444561;NKX6-1,2:-1.1985081874;STAT1,3:-1.21202225984;ZFP161:-1.21900986693;MYOD1:-1.26067921393;TEF:-1.2688009253;CUX2:-1.30327716411;GCM1,2:-1.320386283;TLX1..3_NFIC{dimer}:-1.36427603105;RFX1:-1.38706517703;UFEwm:-1.38819980441;TOPORS:-1.38944873748;MTF1:-1.39854978357;SOX5:-1.40467833191;XCPE1{core}:-1.41780896499;FOXA2:-1.43595114705;RBPJ:-1.45068366206;TFAP2B:-1.46422459567;SP1:-1.46828606297;NR3C1:-1.47894641476;TEAD1:-1.4798095954;TFDP1:-1.51053064238;TP53:-1.51116108276;ONECUT1,2:-1.52080382856;AIRE:-1.52258867188;EBF1:-1.52913652078;SOX{8,9,10}:-1.53205399507;ZEB1:-1.54729889048;ZNF384:-1.54847997971;E2F1..5:-1.56323009308;KLF4:-1.56458766563;GTF2I:-1.57030226706;ZNF423:-1.57072865057;MAZ:-1.57705200378;CRX:-1.58865636449;ARID5B:-1.59062872419;POU3F1..4:-1.59572232044;RORA:-1.62751802108;NKX2-1,4:-1.63411047257;HOX{A4,D4}:-1.64707570367;EVI1:-1.71743249275;ELK1,4_GABP{A,B1}:-1.74300240721;SNAI1..3:-1.78915629408;HOX{A6,A7,B6,B7}:-1.79926235533;HIC1:-1.8030398169;BREu{core}:-1.83239204245;ADNP_IRX_SIX_ZHX:-1.8615717442;NKX2-3_NKX2-5:-1.87534940053;CDC5L:-1.9603260806;LMO2:-2.01830929016;MYBL2:-2.06874930295;FOX{I1,J2}:-2.0843753093;PAX5:-2.10908980943;AR:-2.17842156428;POU1F1:-2.26311869721;SOX17:-2.27511709747;NR5A1,2:-2.29375348657;bHLH_family:-2.29669033371;GFI1B:-2.31755028792;FOXQ1:-2.36686121165;NFY{A,B,C}:-2.48001614935;YY1:-2.48197780544;PBX1:-2.48821924873;LHX3,4:-2.64153840148;HAND1,2:-2.71457709503;GFI1:-2.7360234283;NRF1:-2.78062441828;ZNF143:-3.21365850472;LEF1_TCF7_TCF7L1,2:-3.43315726121
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11869-125B6;search_select_hide=table117:FF:11869-125B6
 }}

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FF:11869-125B6: Difference between revisions

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Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0