FF:11872-125B9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005981 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008157;DRR009029;DRZ000454;DRZ001839;DRZ011804;DRZ013189 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000631,FF:0011444 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.55!3564.34!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.08!1191.07!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.65!447.43!SPI1;;chr10:35484053..35484076,+!p1@CREM!2.58!912.07!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.53!675.32!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!2.50!311.85!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.31!204.94!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.18!151.23!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.17!147.06!OLIG1;;chr6:106534192..106534224,+!p1@PRDM1!2.09!331.66!PRDM1;;chr7:128577972..128578047,+!p1@IRF5!2.09!188.26!IRF5;;chr11:64764435..64764449,-!p1@BATF2!2.08!163.22!BATF2;;chr20:39317868..39317884,-!p1@MAFB!2.07!1293.80!MAFB;;chr6:36355431..36355466,-!p1@ETV7!2.02!103.78!ETV7;;chr21:36260295..36260310,-!p3@RUNX1!1.98!150.19!RUNX1;;chr17:45810594..45810608,+!p1@TBX21!1.95!87.61!TBX21;;chr5:131826457..131826514,-!p1@IRF1!1.94!3141.93!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.94!85.52!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.93!83.44!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.91!1393.92!FOSB;;chr10:35484090..35484104,+!p6@CREM!1.90!78.74!CREM;;chr16:31885093..31885165,+!p1@ZNF267!1.84!983.00!ZNF267;;chr19:33793430..33793447,-!p1@CEBPA!1.84!273.26!CEBPA;;chr6:106534230..106534254,+!p2@PRDM1!1.84!165.83!PRDM1;;chr1:25256756..25256774,-!p1@RUNX3!1.81!116.81!RUNX3;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.58!ZNF365;;chr2:68592394..68592405,+!p2@PLEK!1.80!61.53!PLEK;;chr1:221052776..221052799,+!p1@HLX!1.78!103.78!HLX;;chr16:79634624..79634642,-!p1@MAF!1.77!217.46!MAF;;chr19:50432132..50432217,+!p2@ATF5!1.75!65.19!ATF5;;chr12:72056800..72056834,+!p1@THAP2!1.73!69.88!THAP2;;chr2:97202480..97202499,+!p1@ARID5A!1.72!488.11!ARID5A;;chr2:70142232..70142251,+!p1@MXD1!1.72!273.78!MXD1;;chr11:615942..615957,-!p1@IRF7!1.71!454.73!IRF7;;chr9:102584159..102584174,+!p2@NR4A3!1.71!87.61!NR4A3;;chr11:47400032..47400043,-!p5@SPI1!1.71!50.58!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!1.69!55.80!ZNF438;;chr8:22550982..22550999,-!p1@EGR3!1.68!126.72!EGR3;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!46.93!ZNF385A;;chr1:221052733..221052749,+!p2@HLX!1.67!59.45!HLX;;chr12:72056749..72056767,+!p6@THAP2!1.67!50.58!THAP2;;chr6:391743..391759,+!p1@IRF4!1.66!44.33!IRF4;;chr2:157189180..157189290,-!p1@NR4A2!1.65!215.89!NR4A2;;chr11:65430554..65430579,-!p3@RELA!1.65!107.43!RELA;;chr19:45251395..45251432,+!p8@BCL3!1.64!42.76!BCL3;;chr1:158985493..158985535,+!p4@IFI16!1.63!62.06!IFI16;;chr22:38597987..38598021,+!p2@MAFF!1.61!230.50!MAFF;;chr1:212782094..212782109,+!p1@ATF3!1.60!1002.29!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.60!495.93!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.60!126.20!BACH1;;chr6:106535598..106535637,+!p7@PRDM1!1.60!38.59!PRDM1;;chr3:12329397..12329433,+!p2@PPARG!1.59!84.48!PPARG;;chr2:145275162..145275202,-!p2@ZEB2!1.58!208.07!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.57!438.05!BACH1;;chr14:75988771..75988826,+!p1@BATF!1.56!46.41!BATF;;chr21:36421535..36421610,-!p2@RUNX1!1.55!119.42!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.54!33.90!IKZF1;;chr14:75988831..75988847,+!p2@BATF!1.54!33.37!BATF;;chr2:231084639..231084654,-!p2@SP110!1.53!53.71!SP110;;chr10:35484804..35484902,+!p2@CREM!1.51!116.81!CREM;;chr14:35872453..35872485,-!p2@NFKBIA!1.51!75.09!NFKBIA;;chr16:79634595..79634620,-!p2@MAF!1.51!55.80!MAF;;chr12:72056773..72056796,+!p3@THAP2!1.51!40.68!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.51!35.98!RARA;;chr11:65430535..65430549,-!p4@RELA!1.49!34.94!RELA;;chrX:153305787..153305807,-!p3@MECP2!1.49!30.25!MECP2;;chr10:51572408..51572454,+!p3@NCOA4!1.48!165.31!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!1.48!88.13!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!1.47!2786.80!CEBPB;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.68!OLIG2;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.47!ELF4;;chr9:102584128..102584144,+!p3@NR4A3!1.46!52.67!NR4A3;;chr10:31288370..31288393,-!p3@ZNF438!1.46!28.16!ZNF438;;chr19:19496539..19496576,+!p8@GATAD2A!1.44!45.37!GATAD2A;;chr4:185395590..185395627,-!p3@IRF2!1.44!32.85!IRF2;;chr21:36260343..36260402,-!p6@RUNX1!1.43!40.68!RUNX1;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.29!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!1.43!26.07!SP140;;chr11:47400045..47400060,-!p6@SPI1!1.43!26.07!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.42!154.36!ELF1;;chr6:15246200..15246214,+!p2@JARID2!1.42!68.31!JARID2;;chr18:3449720..3449749,+!p2@TGIF1!1.42!53.19!TGIF1;;chr12:48298765..48298783,-!p2@VDR!1.42!52.15!VDR;;chr9:110252035..110252057,-!p1@KLF4!1.41!380.16!KLF4;;chr3:39195139..39195150,-!p3@CSRNP1!1.40!30.77!CSRNP1;;chr11:47399920..47399931,-!p7@SPI1!1.40!23.99!SPI1;;chr11:615570..615721,-!p2@IRF7!1.39!45.37!IRF7;;chr2:191885737..191885750,-!p4@STAT1!1.38!22.95!STAT1;;chr4:185395633..185395651,-!p2@IRF2!1.37!35.46!IRF2;;chr1:25256439..25256476,-!p3@RUNX3!1.37!22.42!RUNX3;;chr19:36391434..36391450,-!p1@NFKBID!1.36!42.76!NFKBID;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!274.30!ZBTB43;;chr2:61108695..61108753,+!p1@REL!1.35!141.84!REL;;chr12:52445218..52445237,+!p1@NR4A1!1.34!257.09!NR4A1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.12!ETV6;;chr20:48599506..48599526,+!p1@SNAI1!1.33!127.76!SNAI1;;chr9:102584262..102584276,+!p1@NR4A3!1.33!45.37!NR4A3;;chr20:48809000..48809053,+!p12@CEBPB!1.33!27.12!CEBPB;;chr19:54058073..54058088,+!p1@ZNF331!1.33!20.34!ZNF331;;chr22:38598086..38598105,+!p1@MAFF!1.31!199.21!MAFF;;chr3:187463179..187463201,-!p2@BCL6!1.31!78.22!BCL6;;chr19:45250948..45250998,+!p3@BCL3!1.31!48.50!BCL3;;chr16:79634581..79634592,-!p4@MAF!1.31!19.29!MAF;;chr7:150946376..150946389,-!p6@SMARCD3!1.30!18.77!SMARCD3;;chr14:35873947..35873965,-!p1@NFKBIA!1.29!1123.27!NFKBIA;;chr4:106068026..106068084,+!p1@TET2!1.29!163.22!TET2;;chr18:3449586..3449617,+!p8@TGIF1!1.29!29.20!TGIF1;;chr4:103422499..103422632,+!p1@NFKB1!1.27!359.82!NFKB1;;chr10:104155480..104155534,+!p2@NFKB2!1.27!111.08!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!1.27!107.43!CSRNP1;;chr2:70167296..70167306,+!p3@MXD1!1.27!27.12!MXD1;;chr19:54041669..54041697,+!p2@ZNF331!1.27!17.73!ZNF331;;chr10:51572339..51572376,+!p4@NCOA4!1.26!38.07!NCOA4;;chr21:30672734..30672748,+!p11@BACH1!1.26!17.21!BACH1;;chr21:36260980..36261011,-!p1@RUNX1!1.25!466.73!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!1.25!155.40!IFI16;;chr21:30672433..30672464,+!p6@BACH1!1.25!16.69!BACH1;;chr2:231090433..231090469,+!p1@SP140!1.25!16.69!SP140;;chr9:4300050..4300118,-!p1@GLIS3!1.24!103.78!GLIS3;;chr7:149470641..149470694,-!p1@ZNF467!1.24!73.01!ZNF467;;chr2:28618532..28618610,+!p4@FOSL2!1.24!28.16!FOSL2;;chr3:12330560..12330579,+!p1@PPARG!1.24!18.77!PPARG;;chr9:110250697..110250738,-!p2@KLF4!1.23!18.77!KLF4;;chr10:3827371..3827386,-!p2@KLF6!1.22!129.85!KLF6;;chr22:38598057..38598071,+!p3@MAFF!1.22!36.50!MAFF;;chr17:38497715..38497734,+!p8@RARA!1.22!15.64!RARA;;chr12:48298785..48298828,-!p1@VDR!1.21!79.79!VDR;;chr14:35872962..35873025,-!p3@NFKBIA!1.21!38.59!NFKBIA;;chr8:116681123..116681143,-!p4@TRPS1!1.21!29.20!TRPS1;;chr12:56415246..56415286,+!p2@IKZF4!1.21!15.12!IKZF4;;chr18:3449618..3449634,+!p13@TGIF1!1.20!18.25!TGIF1;;chr2:70314240..70314256,+!p4@PCBP1!1.19!29.72!PCBP1;;chr2:185463247..185463263,+!p1@ZNF804A!1.19!25.55!ZNF804A;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!138.19!NFKBIE;;chr6:126240380..126240430,+!p2@NCOA7!1.18!36.50!NCOA7;;chr18:3449527..3449582,+!p6@TGIF1!1.18!27.12!TGIF1;;chr3:150126101..150126118,+!p6@TSC22D2!1.18!22.95!TSC22D2;;chrX:129244430..129244442,-!p5@ELF4!1.18!14.08!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.17!83.96!NFKB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.17!75.09!LRRFIP1;;chr7:28725740..28725778,+!p1@CREB5!1.16!118.90!CREB5;;chr16:89787973..89788001,+!p3@ZNF276!1.16!25.55!ZNF276;;chr6:126240463..126240489,+!p6@NCOA7!1.16!15.12!NCOA7;;chr1:212738742..212738755,+!p2@ATF3!1.16!13.56!ATF3;;chr3:126191157..126191171,-!p4@ZXDC!1.16!13.56!ZXDC;;chr14:75745523..75745537,+!p1@FOS!1.15!1558.19!FOS;;chr20:48807456..48807475,+!p3@CEBPB!1.15!25.55!CEBPB;;chr11:65430038..65430053,-!p12@RELA!1.15!13.04!RELA;;chr2:28615716..28615733,+!p1@FOSL2!1.14!600.75!FOSL2;;chr1:935467..935484,-!p1@HES4!1.14!56.84!HES4;;chr16:3285119..3285133,-!p2@ZNF200!1.14!25.55!ZNF200;;chr5:142782823..142782854,-!p3@NR3C1!1.14!18.25!NR3C1;;chr2:231084820..231084836,-!p5@SP110!1.14!14.60!SP110;;chr17:38474489..38474548,+!p1@RARA!1.13!395.28!RARA;;chr14:74226747..74226779,-!p3@C14orf43!1.13!68.84!C14orf43;;chr10:64575812..64575824,-!p4@EGR2!1.13!12.52!EGR2;;chr13:41593392..41593403,-!p7@ELF1!1.13!12.52!ELF1;;chr7:17338266..17338282,+!p1@AHR!1.12!132.46!AHR;;chr19:45252008..45252024,+!p2@BCL3!1.12!40.15!BCL3;;chr18:3448455..3448480,+!p5@TGIF1!1.12!22.42!TGIF1;;chr6:15246217..15246228,+!p3@JARID2!1.12!21.38!JARID2;;chr20:48807615..48807644,+!p6@CEBPB!1.12!20.34!CEBPB;;chr1:221052994..221053008,+!p6@HLX!1.12!14.60!HLX;;chr21:40177845..40177863,+!p1@ETS2!1.11!708.17!ETS2;;chr21:36260463..36260480,-!p9@RUNX1!1.11!16.17!RUNX1;;chr1:158985686..158985719,+!p15@IFI16!1.11!11.99!IFI16;;chr21:36260325..36260341,-!p14@RUNX1!1.11!11.99!RUNX1;;chr4:106066712..106066728,+!p8@TET2!1.11!11.99!TET2;;chr2:231084659..231084721,-!p1@SP110!1.10!268.04!SP110;;chr2:238600998..238601013,+!p5@LRRFIP1!1.10!11.47!LRRFIP1;;chr2:68615063..68615089,+!p4@PLEK!1.10!11.47!PLEK;;chr3:187455680..187455700,-!p4@BCL6!1.10!11.47!BCL6;;chr1:158979922..158979933,+!p13@IFI16!1.10!11.47!IFI16;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.82!ZEB2;;chr16:3285144..3285191,-!p1@ZNF200!1.08!54.23!ZNF200;;chr1:221054853..221054873,+!p9@HLX!1.08!10.95!HLX;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!10.95!CREB3L2;;chr2:145271342..145271377,-!p5@ZEB2!1.08!10.95!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.07!134.02!ZC3H12A;;chr2:208394817..208394834,+!p3@CREB1!1.07!43.28!CREB1;;chr10:35416142..35416169,+!p3@CREM!1.07!28.68!CREM;;chr2:145275228..145275241,-!p11@ZEB2!1.07!13.04!ZEB2;;chr10:104155455..104155479,+!p1@NFKB2!1.06!152.79!NFKB2;;chr1:157108130..157108173,-!p1@ETV3!1.06!77.18!ETV3;;chr6:35310395..35310410,+!p2@PPARD!1.06!41.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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.55!3564.34!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.08!1191.07!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.65!447.43!SPI1;;chr10:35484053..35484076,+!p1@CREM!2.58!912.07!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.53!675.32!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!2.50!311.85!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.31!204.94!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.18!151.23!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.17!147.06!OLIG1;;chr6:106534192..106534224,+!p1@PRDM1!2.09!331.66!PRDM1;;chr7:128577972..128578047,+!p1@IRF5!2.09!188.26!IRF5;;chr11:64764435..64764449,-!p1@BATF2!2.08!163.22!BATF2;;chr20:39317868..39317884,-!p1@MAFB!2.07!1293.80!MAFB;;chr6:36355431..36355466,-!p1@ETV7!2.02!103.78!ETV7;;chr21:36260295..36260310,-!p3@RUNX1!1.98!150.19!RUNX1;;chr17:45810594..45810608,+!p1@TBX21!1.95!87.61!TBX21;;chr5:131826457..131826514,-!p1@IRF1!1.94!3141.93!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.94!85.52!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.93!83.44!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.91!1393.92!FOSB;;chr10:35484090..35484104,+!p6@CREM!1.90!78.74!CREM;;chr16:31885093..31885165,+!p1@ZNF267!1.84!983.00!ZNF267;;chr19:33793430..33793447,-!p1@CEBPA!1.84!273.26!CEBPA;;chr6:106534230..106534254,+!p2@PRDM1!1.84!165.83!PRDM1;;chr1:25256756..25256774,-!p1@RUNX3!1.81!116.81!RUNX3;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.58!ZNF365;;chr2:68592394..68592405,+!p2@PLEK!1.80!61.53!PLEK;;chr1:221052776..221052799,+!p1@HLX!1.78!103.78!HLX;;chr16:79634624..79634642,-!p1@MAF!1.77!217.46!MAF;;chr19:50432132..50432217,+!p2@ATF5!1.75!65.19!ATF5;;chr12:72056800..72056834,+!p1@THAP2!1.73!69.88!THAP2;;chr2:97202480..97202499,+!p1@ARID5A!1.72!488.11!ARID5A;;chr2:70142232..70142251,+!p1@MXD1!1.72!273.78!MXD1;;chr11:615942..615957,-!p1@IRF7!1.71!454.73!IRF7;;chr9:102584159..102584174,+!p2@NR4A3!1.71!87.61!NR4A3;;chr11:47400032..47400043,-!p5@SPI1!1.71!50.58!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!1.69!55.80!ZNF438;;chr8:22550982..22550999,-!p1@EGR3!1.68!126.72!EGR3;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!46.93!ZNF385A;;chr1:221052733..221052749,+!p2@HLX!1.67!59.45!HLX;;chr12:72056749..72056767,+!p6@THAP2!1.67!50.58!THAP2;;chr6:391743..391759,+!p1@IRF4!1.66!44.33!IRF4;;chr2:157189180..157189290,-!p1@NR4A2!1.65!215.89!NR4A2;;chr11:65430554..65430579,-!p3@RELA!1.65!107.43!RELA;;chr19:45251395..45251432,+!p8@BCL3!1.64!42.76!BCL3;;chr1:158985493..158985535,+!p4@IFI16!1.63!62.06!IFI16;;chr22:38597987..38598021,+!p2@MAFF!1.61!230.50!MAFF;;chr1:212782094..212782109,+!p1@ATF3!1.60!1002.29!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.60!495.93!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.60!126.20!BACH1;;chr6:106535598..106535637,+!p7@PRDM1!1.60!38.59!PRDM1;;chr3:12329397..12329433,+!p2@PPARG!1.59!84.48!PPARG;;chr2:145275162..145275202,-!p2@ZEB2!1.58!208.07!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.57!438.05!BACH1;;chr14:75988771..75988826,+!p1@BATF!1.56!46.41!BATF;;chr21:36421535..36421610,-!p2@RUNX1!1.55!119.42!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.54!33.90!IKZF1;;chr14:75988831..75988847,+!p2@BATF!1.54!33.37!BATF;;chr2:231084639..231084654,-!p2@SP110!1.53!53.71!SP110;;chr10:35484804..35484902,+!p2@CREM!1.51!116.81!CREM;;chr14:35872453..35872485,-!p2@NFKBIA!1.51!75.09!NFKBIA;;chr16:79634595..79634620,-!p2@MAF!1.51!55.80!MAF;;chr12:72056773..72056796,+!p3@THAP2!1.51!40.68!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.51!35.98!RARA;;chr11:65430535..65430549,-!p4@RELA!1.49!34.94!RELA;;chrX:153305787..153305807,-!p3@MECP2!1.49!30.25!MECP2;;chr10:51572408..51572454,+!p3@NCOA4!1.48!165.31!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!1.48!88.13!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!1.47!2786.80!CEBPB;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.68!OLIG2;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.47!ELF4;;chr9:102584128..102584144,+!p3@NR4A3!1.46!52.67!NR4A3;;chr10:31288370..31288393,-!p3@ZNF438!1.46!28.16!ZNF438;;chr19:19496539..19496576,+!p8@GATAD2A!1.44!45.37!GATAD2A;;chr4:185395590..185395627,-!p3@IRF2!1.44!32.85!IRF2;;chr21:36260343..36260402,-!p6@RUNX1!1.43!40.68!RUNX1;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.29!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!1.43!26.07!SP140;;chr11:47400045..47400060,-!p6@SPI1!1.43!26.07!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.42!154.36!ELF1;;chr6:15246200..15246214,+!p2@JARID2!1.42!68.31!JARID2;;chr18:3449720..3449749,+!p2@TGIF1!1.42!53.19!TGIF1;;chr12:48298765..48298783,-!p2@VDR!1.42!52.15!VDR;;chr9:110252035..110252057,-!p1@KLF4!1.41!380.16!KLF4;;chr3:39195139..39195150,-!p3@CSRNP1!1.40!30.77!CSRNP1;;chr11:47399920..47399931,-!p7@SPI1!1.40!23.99!SPI1;;chr11:615570..615721,-!p2@IRF7!1.39!45.37!IRF7;;chr2:191885737..191885750,-!p4@STAT1!1.38!22.95!STAT1;;chr4:185395633..185395651,-!p2@IRF2!1.37!35.46!IRF2;;chr1:25256439..25256476,-!p3@RUNX3!1.37!22.42!RUNX3;;chr19:36391434..36391450,-!p1@NFKBID!1.36!42.76!NFKBID;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!274.30!ZBTB43;;chr2:61108695..61108753,+!p1@REL!1.35!141.84!REL;;chr12:52445218..52445237,+!p1@NR4A1!1.34!257.09!NR4A1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.12!ETV6;;chr20:48599506..48599526,+!p1@SNAI1!1.33!127.76!SNAI1;;chr9:102584262..102584276,+!p1@NR4A3!1.33!45.37!NR4A3;;chr20:48809000..48809053,+!p12@CEBPB!1.33!27.12!CEBPB;;chr19:54058073..54058088,+!p1@ZNF331!1.33!20.34!ZNF331;;chr22:38598086..38598105,+!p1@MAFF!1.31!199.21!MAFF;;chr3:187463179..187463201,-!p2@BCL6!1.31!78.22!BCL6;;chr19:45250948..45250998,+!p3@BCL3!1.31!48.50!BCL3;;chr16:79634581..79634592,-!p4@MAF!1.31!19.29!MAF;;chr7:150946376..150946389,-!p6@SMARCD3!1.30!18.77!SMARCD3;;chr14:35873947..35873965,-!p1@NFKBIA!1.29!1123.27!NFKBIA;;chr4:106068026..106068084,+!p1@TET2!1.29!163.22!TET2;;chr18:3449586..3449617,+!p8@TGIF1!1.29!29.20!TGIF1;;chr4:103422499..103422632,+!p1@NFKB1!1.27!359.82!NFKB1;;chr10:104155480..104155534,+!p2@NFKB2!1.27!111.08!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!1.27!107.43!CSRNP1;;chr2:70167296..70167306,+!p3@MXD1!1.27!27.12!MXD1;;chr19:54041669..54041697,+!p2@ZNF331!1.27!17.73!ZNF331;;chr10:51572339..51572376,+!p4@NCOA4!1.26!38.07!NCOA4;;chr21:30672734..30672748,+!p11@BACH1!1.26!17.21!BACH1;;chr21:36260980..36261011,-!p1@RUNX1!1.25!466.73!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!1.25!155.40!IFI16;;chr21:30672433..30672464,+!p6@BACH1!1.25!16.69!BACH1;;chr2:231090433..231090469,+!p1@SP140!1.25!16.69!SP140;;chr9:4300050..4300118,-!p1@GLIS3!1.24!103.78!GLIS3;;chr7:149470641..149470694,-!p1@ZNF467!1.24!73.01!ZNF467;;chr2:28618532..28618610,+!p4@FOSL2!1.24!28.16!FOSL2;;chr3:12330560..12330579,+!p1@PPARG!1.24!18.77!PPARG;;chr9:110250697..110250738,-!p2@KLF4!1.23!18.77!KLF4;;chr10:3827371..3827386,-!p2@KLF6!1.22!129.85!KLF6;;chr22:38598057..38598071,+!p3@MAFF!1.22!36.50!MAFF;;chr17:38497715..38497734,+!p8@RARA!1.22!15.64!RARA;;chr12:48298785..48298828,-!p1@VDR!1.21!79.79!VDR;;chr14:35872962..35873025,-!p3@NFKBIA!1.21!38.59!NFKBIA;;chr8:116681123..116681143,-!p4@TRPS1!1.21!29.20!TRPS1;;chr12:56415246..56415286,+!p2@IKZF4!1.21!15.12!IKZF4;;chr18:3449618..3449634,+!p13@TGIF1!1.20!18.25!TGIF1;;chr2:70314240..70314256,+!p4@PCBP1!1.19!29.72!PCBP1;;chr2:185463247..185463263,+!p1@ZNF804A!1.19!25.55!ZNF804A;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!138.19!NFKBIE;;chr6:126240380..126240430,+!p2@NCOA7!1.18!36.50!NCOA7;;chr18:3449527..3449582,+!p6@TGIF1!1.18!27.12!TGIF1;;chr3:150126101..150126118,+!p6@TSC22D2!1.18!22.95!TSC22D2;;chrX:129244430..129244442,-!p5@ELF4!1.18!14.08!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.17!83.96!NFKB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.17!75.09!LRRFIP1;;chr7:28725740..28725778,+!p1@CREB5!1.16!118.90!CREB5;;chr16:89787973..89788001,+!p3@ZNF276!1.16!25.55!ZNF276;;chr6:126240463..126240489,+!p6@NCOA7!1.16!15.12!NCOA7;;chr1:212738742..212738755,+!p2@ATF3!1.16!13.56!ATF3;;chr3:126191157..126191171,-!p4@ZXDC!1.16!13.56!ZXDC;;chr14:75745523..75745537,+!p1@FOS!1.15!1558.19!FOS;;chr20:48807456..48807475,+!p3@CEBPB!1.15!25.55!CEBPB;;chr11:65430038..65430053,-!p12@RELA!1.15!13.04!RELA;;chr2:28615716..28615733,+!p1@FOSL2!1.14!600.75!FOSL2;;chr1:935467..935484,-!p1@HES4!1.14!56.84!HES4;;chr16:3285119..3285133,-!p2@ZNF200!1.14!25.55!ZNF200;;chr5:142782823..142782854,-!p3@NR3C1!1.14!18.25!NR3C1;;chr2:231084820..231084836,-!p5@SP110!1.14!14.60!SP110;;chr17:38474489..38474548,+!p1@RARA!1.13!395.28!RARA;;chr14:74226747..74226779,-!p3@C14orf43!1.13!68.84!C14orf43;;chr10:64575812..64575824,-!p4@EGR2!1.13!12.52!EGR2;;chr13:41593392..41593403,-!p7@ELF1!1.13!12.52!ELF1;;chr7:17338266..17338282,+!p1@AHR!1.12!132.46!AHR;;chr19:45252008..45252024,+!p2@BCL3!1.12!40.15!BCL3;;chr18:3448455..3448480,+!p5@TGIF1!1.12!22.42!TGIF1;;chr6:15246217..15246228,+!p3@JARID2!1.12!21.38!JARID2;;chr20:48807615..48807644,+!p6@CEBPB!1.12!20.34!CEBPB;;chr1:221052994..221053008,+!p6@HLX!1.12!14.60!HLX;;chr21:40177845..40177863,+!p1@ETS2!1.11!708.17!ETS2;;chr21:36260463..36260480,-!p9@RUNX1!1.11!16.17!RUNX1;;chr1:158985686..158985719,+!p15@IFI16!1.11!11.99!IFI16;;chr21:36260325..36260341,-!p14@RUNX1!1.11!11.99!RUNX1;;chr4:106066712..106066728,+!p8@TET2!1.11!11.99!TET2;;chr2:231084659..231084721,-!p1@SP110!1.10!268.04!SP110;;chr2:238600998..238601013,+!p5@LRRFIP1!1.10!11.47!LRRFIP1;;chr2:68615063..68615089,+!p4@PLEK!1.10!11.47!PLEK;;chr3:187455680..187455700,-!p4@BCL6!1.10!11.47!BCL6;;chr1:158979922..158979933,+!p13@IFI16!1.10!11.47!IFI16;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.82!ZEB2;;chr16:3285144..3285191,-!p1@ZNF200!1.08!54.23!ZNF200;;chr1:221054853..221054873,+!p9@HLX!1.08!10.95!HLX;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!10.95!CREB3L2;;chr2:145271342..145271377,-!p5@ZEB2!1.08!10.95!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.07!134.02!ZC3H12A;;chr2:208394817..208394834,+!p3@CREB1!1.07!43.28!CREB1;;chr10:35416142..35416169,+!p3@CREM!1.07!28.68!CREM;;chr2:145275228..145275241,-!p11@ZEB2!1.07!13.04!ZEB2;;chr10:104155455..104155479,+!p1@NFKB2!1.06!152.79!NFKB2;;chr1:157108130..157108173,-!p1@ETV3!1.06!77.18!ETV3;;chr6:35310395..35310410,+!p2@PPARD!1.06!41.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11872-125B9 | |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11872-125B9 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11872-125B9 | |id=FF:11872-125B9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011444 | ||
|is_obsolete= | |||
|library_id=CNhs13483 | |||
|library_id_phase_based=2:CNhs13483 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11872 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11872 | |||
|name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2 | |name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2 | ||
|namespace= | |namespace= | ||
Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13483,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13483,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 79: | ||
|rna_weight_ug=2.767455 | |rna_weight_ug=2.767455 | ||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 77: | Line 100: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=STAT5{A,B}:5.12668448578;STAT2,4,6:5.03089260174;FOSL2:4.35330268841;NFE2:4.13587006393;NFE2L2:3.97044467941;IRF7:3.88216735301;BACH2:3.79385448957;FOS_FOS{B,L1}_JUN{B,D}:3.68954908866;CEBPA,B_DDIT3:3.65082218866;STAT1,3:3.63491530742;IRF1,2:3.48788532449;PAX2:3.29444876047;SREBF1,2:3.23344360894;FOXP3:2.8994923943;SPIB:2.83128537095;HLF:2.82119223775;EP300:2.68986224218;SPI1:2.58160095642;NFE2L1:2.52860649275;ATF4:2.45463286651;ATF5_CREB3:2.45165759864;ETS1,2:2.36346500426;DMAP1_NCOR{1,2}_SMARC:2.33660139343;ZBTB16:2.26837197234;ATF6:2.22837056231;NR1H4:2.12577640531;NANOG{mouse}:2.08186889786;NFIL3:2.06869016154;FOXN1:2.06861133661;NFKB1_REL_RELA:1.79006153193;CREB1:1.76535031658;RUNX1..3:1.74508394576;HSF1,2:1.47855772079;TGIF1:1.40856811394;MAFB:1.29031364784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2606442459;BPTF:1.24505782279;JUN:1.21831284565;ELF1,2,4:1.15230445072;FOXD3:1.13912146131;ALX4:1.12218186949;PDX1:1.12031323798;PITX1..3:1.11107397678;CDX1,2,4:1.07765365543;PAX8:1.07160746652;ATF2:0.9910452418;PAX3,7:0.847075602315;HIF1A:0.835466443252;NFATC1..3:0.821466804411;PAX4:0.797434560957;HMGA1,2:0.777929458913;TLX2:0.677333480341;FOXP1:0.651101752959;ESRRA:0.579693231845;HBP1_HMGB_SSRP1_UBTF:0.57091417527;IKZF2:0.506790634257;NKX6-1,2:0.458215435238;SRF:0.421289881899;HMX1:0.419651337906;NR6A1:0.398340617483;GLI1..3:0.351891202323;XBP1:0.280600748722;GATA4:0.261480362833;SMAD1..7,9:0.243715164772;RFX2..5_RFXANK_RFXAP:0.188497340558;AHR_ARNT_ARNT2:0.159298558501;HOX{A6,A7,B6,B7}:0.112234129361;HES1:0.105491649113;PRDM1:0.0822452255267;PPARG:0.0633856732171;FOXM1:0.0500906322778;ESR1:0.0331181296572;NANOG:0.00153848505765;FOXO1,3,4:-0.0134042499449;HOX{A5,B5}:-0.0898213355183;OCT4_SOX2{dimer}:-0.163367040004;FOX{D1,D2}:-0.173285623469;RXRA_VDR{dimer}:-0.183523824702;TBP:-0.184560764647;TFCP2:-0.189284414088;FOXL1:-0.203166070783;NKX3-1:-0.248654715694;EN1,2:-0.253523965796;MYB:-0.257064720997;NKX3-2:-0.276373976464;RREB1:-0.296802932587;EGR1..3:-0.306828697872;ALX1:-0.340712723433;MEF2{A,B,C,D}:-0.425192470982;RBPJ:-0.449585812445;POU1F1:-0.487722152729;POU2F1..3:-0.557511552512;HOXA9_MEIS1:-0.566312264761;RXR{A,B,G}:-0.691360253237;POU5F1:-0.698324874337;MZF1:-0.703405132348;FOX{F1,F2,J1}:-0.712361755655;TFAP4:-0.732205739743;SPZ1:-0.76546576034;TOPORS:-0.799738241691;PAX1,9:-0.833390718504;T:-0.84904816571;REST:-0.857118518586;AIRE:-0.868855166708;HNF4A_NR2F1,2:-0.871183699088;IKZF1:-0.873003064988;DBP:-0.897578840758;VSX1,2:-0.906223033922;ZNF384:-0.945011471813;MYFfamily:-1.00273752237;POU6F1:-1.01709568311;GZF1:-1.02786299085;SOX2:-1.04924576787;NHLH1,2:-1.09736491452;MED-1{core}:-1.10108705858;NKX2-2,8:-1.12302078828;PAX6:-1.13852625057;HNF1A:-1.15137503476;PRRX1,2:-1.17059312582;ZNF238:-1.17962305522;CUX2:-1.19127184369;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.2286112904;GATA6:-1.24913383098;TEF:-1.25211526109;MYBL2:-1.31867271189;RORA:-1.336407544;MTE{core}:-1.34399193791;TFAP2B:-1.38433734524;NKX2-3_NKX2-5:-1.40420945834;ZBTB6:-1.41058005389;ZFP161:-1.46063890475;PATZ1:-1.48942899278;UFEwm:-1.50612572237;NKX2-1,4:-1.51180519922;TAL1_TCF{3,4,12}:-1.5213021723;EVI1:-1.528880108;MTF1:-1.53159483942;ZEB1:-1.56479077072;BREu{core}:-1.57289241142;GCM1,2:-1.57705868003;TEAD1:-1.57805002556;RFX1:-1.59136458035;MYOD1:-1.61796159247;XCPE1{core}:-1.64007440977;SP1:-1.64273274375;TFAP2{A,C}:-1.6614132917;ADNP_IRX_SIX_ZHX:-1.70956599049;GTF2A1,2:-1.71468151743;NR3C1:-1.71480015695;SOX5:-1.73416802447;MAZ:-1.74766102475;FOXA2:-1.75510185931;TP53:-1.77576688739;E2F1..5:-1.78407463462;SOX{8,9,10}:-1.7904142238;TLX1..3_NFIC{dimer}:-1.83192928968;KLF4:-1.8381477702;GTF2I:-1.8493496706;SNAI1..3:-1.91775042518;ZIC1..3:-1.97403977245;ZNF148:-1.98160710731;HOX{A4,D4}:-1.98738921054;TFDP1:-1.99803967906;ONECUT1,2:-2.04279279928;HAND1,2:-2.05974530821;bHLH_family:-2.08396051588;HIC1:-2.09975967271;GFI1B:-2.14037461048;CRX:-2.17578353558;LMO2:-2.20902119273;EBF1:-2.21032297014;NFY{A,B,C}:-2.28284406139;TBX4,5:-2.29700576208;ELK1,4_GABP{A,B1}:-2.31832110651;POU3F1..4:-2.33147520338;NFIX:-2.33606849779;FOX{I1,J2}:-2.3406598515;ZNF423:-2.4442591629;PBX1:-2.50949805721;CDC5L:-2.52386838421;SOX17:-2.56505132643;FOXQ1:-2.59948962023;NR5A1,2:-2.71595325871;NRF1:-2.87442802939;GFI1:-2.93728341334;YY1:-2.97542797272;AR:-3.06800352126;PAX5:-3.13341234337;ARID5B:-3.25121076633;LHX3,4:-3.39587309478;ZNF143:-3.5859174552;LEF1_TCF7_TCF7L1,2:-3.69292127005 | |top_motifs=STAT5{A,B}:5.12668448578;STAT2,4,6:5.03089260174;FOSL2:4.35330268841;NFE2:4.13587006393;NFE2L2:3.97044467941;IRF7:3.88216735301;BACH2:3.79385448957;FOS_FOS{B,L1}_JUN{B,D}:3.68954908866;CEBPA,B_DDIT3:3.65082218866;STAT1,3:3.63491530742;IRF1,2:3.48788532449;PAX2:3.29444876047;SREBF1,2:3.23344360894;FOXP3:2.8994923943;SPIB:2.83128537095;HLF:2.82119223775;EP300:2.68986224218;SPI1:2.58160095642;NFE2L1:2.52860649275;ATF4:2.45463286651;ATF5_CREB3:2.45165759864;ETS1,2:2.36346500426;DMAP1_NCOR{1,2}_SMARC:2.33660139343;ZBTB16:2.26837197234;ATF6:2.22837056231;NR1H4:2.12577640531;NANOG{mouse}:2.08186889786;NFIL3:2.06869016154;FOXN1:2.06861133661;NFKB1_REL_RELA:1.79006153193;CREB1:1.76535031658;RUNX1..3:1.74508394576;HSF1,2:1.47855772079;TGIF1:1.40856811394;MAFB:1.29031364784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2606442459;BPTF:1.24505782279;JUN:1.21831284565;ELF1,2,4:1.15230445072;FOXD3:1.13912146131;ALX4:1.12218186949;PDX1:1.12031323798;PITX1..3:1.11107397678;CDX1,2,4:1.07765365543;PAX8:1.07160746652;ATF2:0.9910452418;PAX3,7:0.847075602315;HIF1A:0.835466443252;NFATC1..3:0.821466804411;PAX4:0.797434560957;HMGA1,2:0.777929458913;TLX2:0.677333480341;FOXP1:0.651101752959;ESRRA:0.579693231845;HBP1_HMGB_SSRP1_UBTF:0.57091417527;IKZF2:0.506790634257;NKX6-1,2:0.458215435238;SRF:0.421289881899;HMX1:0.419651337906;NR6A1:0.398340617483;GLI1..3:0.351891202323;XBP1:0.280600748722;GATA4:0.261480362833;SMAD1..7,9:0.243715164772;RFX2..5_RFXANK_RFXAP:0.188497340558;AHR_ARNT_ARNT2:0.159298558501;HOX{A6,A7,B6,B7}:0.112234129361;HES1:0.105491649113;PRDM1:0.0822452255267;PPARG:0.0633856732171;FOXM1:0.0500906322778;ESR1:0.0331181296572;NANOG:0.00153848505765;FOXO1,3,4:-0.0134042499449;HOX{A5,B5}:-0.0898213355183;OCT4_SOX2{dimer}:-0.163367040004;FOX{D1,D2}:-0.173285623469;RXRA_VDR{dimer}:-0.183523824702;TBP:-0.184560764647;TFCP2:-0.189284414088;FOXL1:-0.203166070783;NKX3-1:-0.248654715694;EN1,2:-0.253523965796;MYB:-0.257064720997;NKX3-2:-0.276373976464;RREB1:-0.296802932587;EGR1..3:-0.306828697872;ALX1:-0.340712723433;MEF2{A,B,C,D}:-0.425192470982;RBPJ:-0.449585812445;POU1F1:-0.487722152729;POU2F1..3:-0.557511552512;HOXA9_MEIS1:-0.566312264761;RXR{A,B,G}:-0.691360253237;POU5F1:-0.698324874337;MZF1:-0.703405132348;FOX{F1,F2,J1}:-0.712361755655;TFAP4:-0.732205739743;SPZ1:-0.76546576034;TOPORS:-0.799738241691;PAX1,9:-0.833390718504;T:-0.84904816571;REST:-0.857118518586;AIRE:-0.868855166708;HNF4A_NR2F1,2:-0.871183699088;IKZF1:-0.873003064988;DBP:-0.897578840758;VSX1,2:-0.906223033922;ZNF384:-0.945011471813;MYFfamily:-1.00273752237;POU6F1:-1.01709568311;GZF1:-1.02786299085;SOX2:-1.04924576787;NHLH1,2:-1.09736491452;MED-1{core}:-1.10108705858;NKX2-2,8:-1.12302078828;PAX6:-1.13852625057;HNF1A:-1.15137503476;PRRX1,2:-1.17059312582;ZNF238:-1.17962305522;CUX2:-1.19127184369;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.2286112904;GATA6:-1.24913383098;TEF:-1.25211526109;MYBL2:-1.31867271189;RORA:-1.336407544;MTE{core}:-1.34399193791;TFAP2B:-1.38433734524;NKX2-3_NKX2-5:-1.40420945834;ZBTB6:-1.41058005389;ZFP161:-1.46063890475;PATZ1:-1.48942899278;UFEwm:-1.50612572237;NKX2-1,4:-1.51180519922;TAL1_TCF{3,4,12}:-1.5213021723;EVI1:-1.528880108;MTF1:-1.53159483942;ZEB1:-1.56479077072;BREu{core}:-1.57289241142;GCM1,2:-1.57705868003;TEAD1:-1.57805002556;RFX1:-1.59136458035;MYOD1:-1.61796159247;XCPE1{core}:-1.64007440977;SP1:-1.64273274375;TFAP2{A,C}:-1.6614132917;ADNP_IRX_SIX_ZHX:-1.70956599049;GTF2A1,2:-1.71468151743;NR3C1:-1.71480015695;SOX5:-1.73416802447;MAZ:-1.74766102475;FOXA2:-1.75510185931;TP53:-1.77576688739;E2F1..5:-1.78407463462;SOX{8,9,10}:-1.7904142238;TLX1..3_NFIC{dimer}:-1.83192928968;KLF4:-1.8381477702;GTF2I:-1.8493496706;SNAI1..3:-1.91775042518;ZIC1..3:-1.97403977245;ZNF148:-1.98160710731;HOX{A4,D4}:-1.98738921054;TFDP1:-1.99803967906;ONECUT1,2:-2.04279279928;HAND1,2:-2.05974530821;bHLH_family:-2.08396051588;HIC1:-2.09975967271;GFI1B:-2.14037461048;CRX:-2.17578353558;LMO2:-2.20902119273;EBF1:-2.21032297014;NFY{A,B,C}:-2.28284406139;TBX4,5:-2.29700576208;ELK1,4_GABP{A,B1}:-2.31832110651;POU3F1..4:-2.33147520338;NFIX:-2.33606849779;FOX{I1,J2}:-2.3406598515;ZNF423:-2.4442591629;PBX1:-2.50949805721;CDC5L:-2.52386838421;SOX17:-2.56505132643;FOXQ1:-2.59948962023;NR5A1,2:-2.71595325871;NRF1:-2.87442802939;GFI1:-2.93728341334;YY1:-2.97542797272;AR:-3.06800352126;PAX5:-3.13341234337;ARID5B:-3.25121076633;LHX3,4:-3.39587309478;ZNF143:-3.5859174552;LEF1_TCF7_TCF7L1,2:-3.69292127005 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11872-125B9;search_select_hide=table117:FF:11872-125B9 | |||
}} | }} |
Latest revision as of 18:25, 4 June 2020
Name: | CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13483 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13483
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13483
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0749 |
10 | 10 | 0.018 |
100 | 100 | 0.916 |
101 | 101 | 0.836 |
102 | 102 | 0.767 |
103 | 103 | 0.378 |
104 | 104 | 0.609 |
105 | 105 | 0.217 |
106 | 106 | 6.8682e-4 |
107 | 107 | 0.211 |
108 | 108 | 0.94 |
109 | 109 | 0.303 |
11 | 11 | 0.156 |
110 | 110 | 0.134 |
111 | 111 | 0.023 |
112 | 112 | 0.322 |
113 | 113 | 0.43 |
114 | 114 | 0.0118 |
115 | 115 | 0.306 |
116 | 116 | 0.844 |
117 | 117 | 0.0644 |
118 | 118 | 0.166 |
119 | 119 | 0.118 |
12 | 12 | 0.376 |
120 | 120 | 0.708 |
121 | 121 | 0.468 |
122 | 122 | 0.801 |
123 | 123 | 0.0351 |
124 | 124 | 0.749 |
125 | 125 | 0.369 |
126 | 126 | 0.343 |
127 | 127 | 0.436 |
128 | 128 | 0.032 |
129 | 129 | 0.537 |
13 | 13 | 0.106 |
130 | 130 | 0.0767 |
131 | 131 | 0.573 |
132 | 132 | 0.0685 |
133 | 133 | 0.648 |
134 | 134 | 0.612 |
135 | 135 | 0.81 |
136 | 136 | 0.602 |
137 | 137 | 0.0149 |
138 | 138 | 0.153 |
139 | 139 | 0.0309 |
14 | 14 | 0.433 |
140 | 140 | 0.168 |
141 | 141 | 0.288 |
142 | 142 | 0.0968 |
143 | 143 | 0.0477 |
144 | 144 | 0.682 |
145 | 145 | 0.285 |
146 | 146 | 0.577 |
147 | 147 | 0.503 |
148 | 148 | 0.00931 |
149 | 149 | 0.939 |
15 | 15 | 0.169 |
150 | 150 | 0.433 |
151 | 151 | 0.361 |
152 | 152 | 0.232 |
153 | 153 | 0.778 |
154 | 154 | 0.319 |
155 | 155 | 0.732 |
156 | 156 | 0.484 |
157 | 157 | 0.395 |
158 | 158 | 0.0118 |
159 | 159 | 0.667 |
16 | 16 | 0.353 |
160 | 160 | 0.301 |
161 | 161 | 0.403 |
162 | 162 | 0.299 |
163 | 163 | 0.121 |
164 | 164 | 0.0747 |
165 | 165 | 0.147 |
166 | 166 | 0.702 |
167 | 167 | 0.083 |
168 | 168 | 0.381 |
169 | 169 | 0.00817 |
17 | 17 | 0.211 |
18 | 18 | 0.177 |
19 | 19 | 0.383 |
2 | 2 | 0.642 |
20 | 20 | 0.247 |
21 | 21 | 0.421 |
22 | 22 | 0.333 |
23 | 23 | 0.0444 |
24 | 24 | 0.345 |
25 | 25 | 0.394 |
26 | 26 | 0.0566 |
27 | 27 | 0.676 |
28 | 28 | 0.516 |
29 | 29 | 0.233 |
3 | 3 | 0.0959 |
30 | 30 | 0.439 |
31 | 31 | 0.849 |
32 | 32 | 0.813 |
33 | 33 | 0.316 |
34 | 34 | 0.71 |
35 | 35 | 0.17 |
36 | 36 | 0.0742 |
37 | 37 | 0.0775 |
38 | 38 | 0.388 |
39 | 39 | 0.844 |
4 | 4 | 0.944 |
40 | 40 | 0.251 |
41 | 41 | 0.0257 |
42 | 42 | 0.372 |
43 | 43 | 0.0429 |
44 | 44 | 0.993 |
45 | 45 | 0.929 |
46 | 46 | 0.151 |
47 | 47 | 0.502 |
48 | 48 | 0.462 |
49 | 49 | 0.123 |
5 | 5 | 0.276 |
50 | 50 | 0.931 |
51 | 51 | 0.445 |
52 | 52 | 0.394 |
53 | 53 | 0.39 |
54 | 54 | 0.368 |
55 | 55 | 0.41 |
56 | 56 | 0.701 |
57 | 57 | 0.665 |
58 | 58 | 0.122 |
59 | 59 | 0.35 |
6 | 6 | 0.711 |
60 | 60 | 0.0488 |
61 | 61 | 0.621 |
62 | 62 | 0.0637 |
63 | 63 | 0.5 |
64 | 64 | 0.411 |
65 | 65 | 0.23 |
66 | 66 | 0.224 |
67 | 67 | 0.576 |
68 | 68 | 0.927 |
69 | 69 | 0.578 |
7 | 7 | 0.278 |
70 | 70 | 0.0251 |
71 | 71 | 0.0377 |
72 | 72 | 0.211 |
73 | 73 | 0.203 |
74 | 74 | 0.15 |
75 | 75 | 0.124 |
76 | 76 | 0.174 |
77 | 77 | 0.596 |
78 | 78 | 0.108 |
79 | 79 | 0.296 |
8 | 8 | 0.39 |
80 | 80 | 0.493 |
81 | 81 | 0.302 |
82 | 82 | 0.205 |
83 | 83 | 0.0759 |
84 | 84 | 0.364 |
85 | 85 | 0.0195 |
86 | 86 | 0.0568 |
87 | 87 | 0.728 |
88 | 88 | 0.659 |
89 | 89 | 0.368 |
9 | 9 | 0.514 |
90 | 90 | 0.0745 |
91 | 91 | 0.221 |
92 | 92 | 0.211 |
93 | 93 | 0.502 |
94 | 94 | 0.0557 |
95 | 95 | 0.513 |
96 | 96 | 0.46 |
97 | 97 | 0.771 |
98 | 98 | 0.104 |
99 | 99 | 0.0594 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13483
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011444 CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000631 (trehalose dimycolate (TDM) treatment sample)
0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)