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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005767
|DRA_sample_Accession=CAGE@SAMD00005767
|accession_numbers=CAGE;DRX008133;DRR009005;DRZ000430;DRZ001815
|accession_numbers=CAGE;DRX008133;DRR009005;DRZ000430;DRZ001815;DRZ011780;DRZ013165
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
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|fonse_treatment_closure=FF:0000343,FF:0011101,FF:11873-125C1
|fonse_treatment_closure=FF:0000343,FF:0011101,FF:11873-125C1
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg38.nobarcode.ctss.bed.gz
|id=FF:11873-125C1
|id=FF:11873-125C1
|is_a=EFO:0002091;;FF:0011101
|is_a=EFO:0002091;;FF:0011101
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|library_id=CNhs13484
|library_id=CNhs13484
|library_id_phase_based=2:CNhs13484
|library_id_phase_based=2:CNhs13484
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11873
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11873
|name=CD14+ monocytes - mock treated, donor2
|name=CD14+ monocytes - mock treated, donor2
|namespace=
|namespace=
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 91: Line 101:
|top_motifs=SREBF1,2:2.78189864305;SPI1:2.29522402875;SPIB:2.29332145778;NFE2L2:2.18818280531;PAX2:2.02258058698;NFE2:1.94422878;NANOG{mouse}:1.89483906338;DMAP1_NCOR{1,2}_SMARC:1.89091840787;ETS1,2:1.88303061279;EP300:1.85979363308;FOXP3:1.71351036481;BACH2:1.70524982709;SPZ1:1.59927012756;FOSL2:1.58968747532;CEBPA,B_DDIT3:1.47912563733;HMX1:1.46771423741;FOXD3:1.44935029897;FOS_FOS{B,L1}_JUN{B,D}:1.39446435121;NR1H4:1.36814125279;PDX1:1.36154370516;SMAD1..7,9:1.30591280132;TLX2:1.29997777128;ELF1,2,4:1.29795677775;FOXN1:1.26886376264;ESR1:1.24331110961;HLF:1.1933039528;RUNX1..3:1.17520354783;HES1:1.15310648377;ATF5_CREB3:1.12820115403;NFIL3:1.10995005946;NFE2L1:1.10157449882;ATF4:1.09617538898;TFCP2:0.99568699561;GLI1..3:0.97461215425;ESRRA:0.973511296725;IRF1,2:0.957454933995;RXRA_VDR{dimer}:0.876179171791;PPARG:0.857177406923;MAFB:0.773780808546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.768114534984;HIF1A:0.76182412897;NFKB1_REL_RELA:0.75935029106;ATF6:0.728049886952;FOX{D1,D2}:0.644815741392;CREB1:0.642135439336;TGIF1:0.6182888733;FOX{F1,F2,J1}:0.612088753091;IRF7:0.605655420198;JUN:0.449245059618;NANOG:0.375159606326;FOXO1,3,4:0.370039779172;RFX2..5_RFXANK_RFXAP:0.362972580881;HBP1_HMGB_SSRP1_UBTF:0.34305198996;ZBTB16:0.342521323505;NFIX:0.33591679457;HMGA1,2:0.326233362551;PRDM1:0.304388696422;ZNF148:0.275537256885;AHR_ARNT_ARNT2:0.262671364922;BPTF:0.250535266047;HSF1,2:0.249666223549;IKZF2:0.223527578857;CDX1,2,4:0.185948847825;ALX4:0.185244831788;GATA4:0.129184436669;PITX1..3:0.112275353843;MYB:0.112042865635;STAT2,4,6:0.0951265761878;ATF2:0.073482276229;MYFfamily:0.0684718823837;HNF4A_NR2F1,2:0.00396715450118;FOXP1:-0.0354916939138;EGR1..3:-0.0593948358401;OCT4_SOX2{dimer}:-0.0613876389356;POU1F1:-0.090411253842;STAT1,3:-0.149877113449;ZBTB6:-0.1529987667;NR6A1:-0.181568432728;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.19078010958;PATZ1:-0.193860527193;NKX3-2:-0.198924639883;TOPORS:-0.220368671686;NKX6-1,2:-0.240460786933;NKX2-2,8:-0.242631955843;PAX4:-0.25652717383;TFAP4:-0.274487045657;PAX3,7:-0.304307746906;REST:-0.307193280091;MZF1:-0.315389428085;RXR{A,B,G}:-0.32049439479;RREB1:-0.323872503789;VSX1,2:-0.326553798112;TBP:-0.338169975566;POU5F1:-0.339262032279;EVI1:-0.357372128182;ZNF238:-0.36444613403;ALX1:-0.407949848041;CUX2:-0.426144962777;MED-1{core}:-0.426812328324;GATA6:-0.435828079958;TFAP2{A,C}:-0.438194853769;EN1,2:-0.463778067171;SRF:-0.499209602442;PRRX1,2:-0.499661967625;XBP1:-0.504233411533;HOX{A6,A7,B6,B7}:-0.517399112086;NHLH1,2:-0.520069204712;FOXM1:-0.56197199346;AIRE:-0.566696533384;HNF1A:-0.567381150159;ZIC1..3:-0.581299679847;LMO2:-0.585348873969;GCM1,2:-0.585857112749;PAX1,9:-0.623393871601;RBPJ:-0.632067930419;TBX4,5:-0.657018317712;HOX{A5,B5}:-0.666912090832;STAT5{A,B}:-0.668755756689;EBF1:-0.675212013999;PAX8:-0.681487788261;SOX2:-0.683604397956;TFAP2B:-0.686240702669;MEF2{A,B,C,D}:-0.691446782038;HOX{A4,D4}:-0.70644856542;TAL1_TCF{3,4,12}:-0.723456369156;MYOD1:-0.730186027269;ZNF423:-0.739984993926;GZF1:-0.788889244122;SOX5:-0.796308603762;MTE{core}:-0.80470239984;ZFP161:-0.827380996627;MTF1:-0.830284187396;TLX1..3_NFIC{dimer}:-0.859601866792;NKX2-3_NKX2-5:-0.865554042824;GTF2A1,2:-0.871548610044;NKX3-1:-0.875429559681;KLF4:-0.879303481503;AR:-0.899798374649;CRX:-0.900628611503;HAND1,2:-0.926734154618;ZEB1:-0.936290220199;UFEwm:-0.951162320723;NFATC1..3:-0.960580730894;FOXA2:-0.965866899993;TP53:-0.984006125039;HOXA9_MEIS1:-0.984192624946;PAX5:-0.99257966114;NR5A1,2:-0.998989486484;MYBL2:-1.00158519699;ELK1,4_GABP{A,B1}:-1.00994979459;MAZ:-1.01003094541;POU2F1..3:-1.0297605812;TFDP1:-1.03104863591;RORA:-1.03225150073;TEF:-1.0653956833;GTF2I:-1.06963331666;PAX6:-1.07763832466;IKZF1:-1.09908565583;XCPE1{core}:-1.14602327501;SP1:-1.15114050895;ONECUT1,2:-1.15718221969;RFX1:-1.18779429357;POU6F1:-1.1879861826;SNAI1..3:-1.21776647728;TEAD1:-1.22761411247;T:-1.26861843782;FOXQ1:-1.27255803254;YY1:-1.28175412126;BREu{core}:-1.2899404555;SOX{8,9,10}:-1.32420620027;HIC1:-1.3262106696;FOXL1:-1.34146106668;ARID5B:-1.34643797081;DBP:-1.3527455384;ZNF384:-1.42476296469;E2F1..5:-1.44563501454;NR3C1:-1.52575464466;CDC5L:-1.58903577401;LHX3,4:-1.60193976783;GFI1B:-1.70857399852;NKX2-1,4:-1.71819117281;bHLH_family:-1.78359160034;FOX{I1,J2}:-1.87473398412;NRF1:-1.87796469643;SOX17:-2.08275220254;PBX1:-2.08731233295;POU3F1..4:-2.10967091076;NFY{A,B,C}:-2.14145119405;ZNF143:-2.30042593616;LEF1_TCF7_TCF7L1,2:-2.3366347032;GFI1:-2.38090067199;ADNP_IRX_SIX_ZHX:-2.3838380903
|top_motifs=SREBF1,2:2.78189864305;SPI1:2.29522402875;SPIB:2.29332145778;NFE2L2:2.18818280531;PAX2:2.02258058698;NFE2:1.94422878;NANOG{mouse}:1.89483906338;DMAP1_NCOR{1,2}_SMARC:1.89091840787;ETS1,2:1.88303061279;EP300:1.85979363308;FOXP3:1.71351036481;BACH2:1.70524982709;SPZ1:1.59927012756;FOSL2:1.58968747532;CEBPA,B_DDIT3:1.47912563733;HMX1:1.46771423741;FOXD3:1.44935029897;FOS_FOS{B,L1}_JUN{B,D}:1.39446435121;NR1H4:1.36814125279;PDX1:1.36154370516;SMAD1..7,9:1.30591280132;TLX2:1.29997777128;ELF1,2,4:1.29795677775;FOXN1:1.26886376264;ESR1:1.24331110961;HLF:1.1933039528;RUNX1..3:1.17520354783;HES1:1.15310648377;ATF5_CREB3:1.12820115403;NFIL3:1.10995005946;NFE2L1:1.10157449882;ATF4:1.09617538898;TFCP2:0.99568699561;GLI1..3:0.97461215425;ESRRA:0.973511296725;IRF1,2:0.957454933995;RXRA_VDR{dimer}:0.876179171791;PPARG:0.857177406923;MAFB:0.773780808546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.768114534984;HIF1A:0.76182412897;NFKB1_REL_RELA:0.75935029106;ATF6:0.728049886952;FOX{D1,D2}:0.644815741392;CREB1:0.642135439336;TGIF1:0.6182888733;FOX{F1,F2,J1}:0.612088753091;IRF7:0.605655420198;JUN:0.449245059618;NANOG:0.375159606326;FOXO1,3,4:0.370039779172;RFX2..5_RFXANK_RFXAP:0.362972580881;HBP1_HMGB_SSRP1_UBTF:0.34305198996;ZBTB16:0.342521323505;NFIX:0.33591679457;HMGA1,2:0.326233362551;PRDM1:0.304388696422;ZNF148:0.275537256885;AHR_ARNT_ARNT2:0.262671364922;BPTF:0.250535266047;HSF1,2:0.249666223549;IKZF2:0.223527578857;CDX1,2,4:0.185948847825;ALX4:0.185244831788;GATA4:0.129184436669;PITX1..3:0.112275353843;MYB:0.112042865635;STAT2,4,6:0.0951265761878;ATF2:0.073482276229;MYFfamily:0.0684718823837;HNF4A_NR2F1,2:0.00396715450118;FOXP1:-0.0354916939138;EGR1..3:-0.0593948358401;OCT4_SOX2{dimer}:-0.0613876389356;POU1F1:-0.090411253842;STAT1,3:-0.149877113449;ZBTB6:-0.1529987667;NR6A1:-0.181568432728;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.19078010958;PATZ1:-0.193860527193;NKX3-2:-0.198924639883;TOPORS:-0.220368671686;NKX6-1,2:-0.240460786933;NKX2-2,8:-0.242631955843;PAX4:-0.25652717383;TFAP4:-0.274487045657;PAX3,7:-0.304307746906;REST:-0.307193280091;MZF1:-0.315389428085;RXR{A,B,G}:-0.32049439479;RREB1:-0.323872503789;VSX1,2:-0.326553798112;TBP:-0.338169975566;POU5F1:-0.339262032279;EVI1:-0.357372128182;ZNF238:-0.36444613403;ALX1:-0.407949848041;CUX2:-0.426144962777;MED-1{core}:-0.426812328324;GATA6:-0.435828079958;TFAP2{A,C}:-0.438194853769;EN1,2:-0.463778067171;SRF:-0.499209602442;PRRX1,2:-0.499661967625;XBP1:-0.504233411533;HOX{A6,A7,B6,B7}:-0.517399112086;NHLH1,2:-0.520069204712;FOXM1:-0.56197199346;AIRE:-0.566696533384;HNF1A:-0.567381150159;ZIC1..3:-0.581299679847;LMO2:-0.585348873969;GCM1,2:-0.585857112749;PAX1,9:-0.623393871601;RBPJ:-0.632067930419;TBX4,5:-0.657018317712;HOX{A5,B5}:-0.666912090832;STAT5{A,B}:-0.668755756689;EBF1:-0.675212013999;PAX8:-0.681487788261;SOX2:-0.683604397956;TFAP2B:-0.686240702669;MEF2{A,B,C,D}:-0.691446782038;HOX{A4,D4}:-0.70644856542;TAL1_TCF{3,4,12}:-0.723456369156;MYOD1:-0.730186027269;ZNF423:-0.739984993926;GZF1:-0.788889244122;SOX5:-0.796308603762;MTE{core}:-0.80470239984;ZFP161:-0.827380996627;MTF1:-0.830284187396;TLX1..3_NFIC{dimer}:-0.859601866792;NKX2-3_NKX2-5:-0.865554042824;GTF2A1,2:-0.871548610044;NKX3-1:-0.875429559681;KLF4:-0.879303481503;AR:-0.899798374649;CRX:-0.900628611503;HAND1,2:-0.926734154618;ZEB1:-0.936290220199;UFEwm:-0.951162320723;NFATC1..3:-0.960580730894;FOXA2:-0.965866899993;TP53:-0.984006125039;HOXA9_MEIS1:-0.984192624946;PAX5:-0.99257966114;NR5A1,2:-0.998989486484;MYBL2:-1.00158519699;ELK1,4_GABP{A,B1}:-1.00994979459;MAZ:-1.01003094541;POU2F1..3:-1.0297605812;TFDP1:-1.03104863591;RORA:-1.03225150073;TEF:-1.0653956833;GTF2I:-1.06963331666;PAX6:-1.07763832466;IKZF1:-1.09908565583;XCPE1{core}:-1.14602327501;SP1:-1.15114050895;ONECUT1,2:-1.15718221969;RFX1:-1.18779429357;POU6F1:-1.1879861826;SNAI1..3:-1.21776647728;TEAD1:-1.22761411247;T:-1.26861843782;FOXQ1:-1.27255803254;YY1:-1.28175412126;BREu{core}:-1.2899404555;SOX{8,9,10}:-1.32420620027;HIC1:-1.3262106696;FOXL1:-1.34146106668;ARID5B:-1.34643797081;DBP:-1.3527455384;ZNF384:-1.42476296469;E2F1..5:-1.44563501454;NR3C1:-1.52575464466;CDC5L:-1.58903577401;LHX3,4:-1.60193976783;GFI1B:-1.70857399852;NKX2-1,4:-1.71819117281;bHLH_family:-1.78359160034;FOX{I1,J2}:-1.87473398412;NRF1:-1.87796469643;SOX17:-2.08275220254;PBX1:-2.08731233295;POU3F1..4:-2.10967091076;NFY{A,B,C}:-2.14145119405;ZNF143:-2.30042593616;LEF1_TCF7_TCF7L1,2:-2.3366347032;GFI1:-2.38090067199;ADNP_IRX_SIX_ZHX:-2.3838380903
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11873-125C1;search_select_hide=table117:FF:11873-125C1
}}
}}

Latest revision as of 18:25, 4 June 2020

Name:CD14+ monocytes - mock treated, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13484
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age51
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD4-4
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005767
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13484 CAGE DRX008133 DRR009005
Accession ID Hg19

Library idBAMCTSS
CNhs13484 DRZ000430 DRZ001815
Accession ID Hg38

Library idBAMCTSS
CNhs13484 DRZ011780 DRZ013165
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.139
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.329
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.49
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.119
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.139
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.743
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.139
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.139
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.139
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.383
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.36
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0307
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.824
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.139
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.139
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.139
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.244
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.766
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.244
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.894
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.585
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.329
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.824
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.291
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.457
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.4
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.329
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.173
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.461
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.139
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.892
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.244
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.583
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.069
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.139
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.4
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.881
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.244
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.139
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.244
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13484

Jaspar motifP-value
MA0002.21.13982e-6
MA0003.10.297
MA0004.10.382
MA0006.10.799
MA0007.10.804
MA0009.10.254
MA0014.10.955
MA0017.10.0104
MA0018.20.439
MA0019.10.638
MA0024.18.41664e-4
MA0025.10.0304
MA0027.10.784
MA0028.10.164
MA0029.10.425
MA0030.10.563
MA0031.10.957
MA0035.20.537
MA0038.10.0195
MA0039.20.693
MA0040.10.338
MA0041.10.561
MA0042.10.822
MA0043.10.0189
MA0046.10.147
MA0047.20.45
MA0048.10.844
MA0050.13.35974e-4
MA0051.10.138
MA0052.10.911
MA0055.10.297
MA0057.10.727
MA0058.10.162
MA0059.10.489
MA0060.11.05446e-11
MA0061.10.00221
MA0062.20.315
MA0065.20.0194
MA0066.10.0802
MA0067.17.81356e-4
MA0068.10.194
MA0069.10.722
MA0070.10.05
MA0071.10.202
MA0072.10.738
MA0073.10.3
MA0074.10.212
MA0076.10.156
MA0077.10.183
MA0078.10.548
MA0079.20.789
MA0080.21.21096e-16
MA0081.13.78659e-4
MA0083.10.723
MA0084.10.779
MA0087.10.928
MA0088.10.496
MA0090.10.12
MA0091.10.372
MA0092.10.224
MA0093.10.378
MA0099.23.01452e-33
MA0100.10.671
MA0101.10.0505
MA0102.25.46054e-5
MA0103.10.714
MA0104.20.951
MA0105.15.03304e-6
MA0106.10.735
MA0107.10.0193
MA0108.20.0018
MA0111.10.308
MA0112.25.43569e-5
MA0113.10.991
MA0114.10.18
MA0115.10.616
MA0116.12.34896e-4
MA0117.10.319
MA0119.10.422
MA0122.10.629
MA0124.10.359
MA0125.10.392
MA0131.10.371
MA0135.10.292
MA0136.19.20282e-16
MA0137.20.772
MA0138.20.77
MA0139.10.78
MA0140.10.497
MA0141.10.0644
MA0142.10.57
MA0143.10.49
MA0144.10.238
MA0145.10.164
MA0146.10.0568
MA0147.10.984
MA0148.10.978
MA0149.10.196
MA0150.17.75027e-13
MA0152.10.279
MA0153.10.00583
MA0154.10.00205
MA0155.10.737
MA0156.11.77919e-8
MA0157.10.548
MA0159.10.0113
MA0160.10.0237
MA0162.10.966
MA0163.13.97054e-6
MA0164.10.747
MA0258.10.00248
MA0259.10.466



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13484

Novel motifP-value
10.123
100.0241
1000.604
1010.611
1020.338
1030.244
1040.727
1050.335
1066.73142e-4
1070.14
1080.999
1090.22
110.2
1100.295
1110.0536
1120.192
1130.604
1140.0161
1150.236
1160.792
1170.0659
1180.189
1190.191
120.378
1200.921
1210.519
1220.51
1230.0585
1240.816
1250.83
1260.253
1270.252
1280.0206
1290.412
130.271
1300.133
1310.376
1320.0748
1330.94
1340.56
1350.219
1360.819
1370.00391
1380.174
1390.037
140.387
1400.119
1410.441
1420.964
1430.027
1440.834
1450.545
1460.62
1470.26
1480.0155
1490.598
150.157
1500.51
1510.281
1520.0821
1530.363
1540.383
1550.27
1560.88
1570.48
1580.0815
1590.739
160.326
1600.473
1610.596
1620.364
1630.605
1640.175
1650.141
1660.504
1670.308
1680.466
1690.00913
170.16
180.173
190.257
20.823
200.447
210.208
220.155
230.0568
240.243
250.334
260.045
270.618
280.416
290.386
30.0713
300.701
310.674
320.831
330.625
340.309
350.201
360.256
370.0675
380.299
390.728
40.723
400.306
410.0134
420.37
430.0509
440.694
450.61
460.124
470.584
480.484
490.116
50.207
500.976
510.317
520.259
530.244
540.274
550.202
560.631
570.769
580.0781
590.0892
60.587
600.0385
610.423
620.0268
630.465
640.421
650.199
660.345
670.426
680.773
690.638
70.252
700.0162
710.0355
720.246
730.0894
740.0425
750.0802
760.285
770.371
780.0865
790.0912
80.361
800.237
810.399
820.0839
830.145
840.663
850.00833
860.0356
870.365
880.409
890.31
90.332
900.0722
910.349
920.144
930.143
940.033
950.405
960.543
970.999
980.142
990.159



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13484


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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